AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018126.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018126.01.T01 MTR_4g005930 98.795 166 2 0 43 208 599 764 1.55e-115 346
MsG0480018126.01.T01 MTR_6g045363 60.784 153 58 1 44 196 611 761 5.97e-58 194
MsG0480018126.01.T01 MTR_1g111120 57.432 148 63 0 44 191 607 754 1.83e-54 185
MsG0480018126.01.T01 MTR_4g083940 45.736 129 70 0 46 174 583 711 8.13e-30 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018126.01.T01 AT5G49830 73.333 180 44 2 30 207 574 751 1.19e-80 255
MsG0480018126.01.T01 AT5G49830 73.333 180 44 2 30 207 605 782 2.09e-80 255
MsG0480018126.01.T01 AT5G49830 73.333 180 44 2 30 207 636 813 6.79e-80 254
MsG0480018126.01.T01 AT1G10385 64.780 159 54 2 44 201 596 753 3.61e-65 214
MsG0480018126.01.T01 AT1G10180 44.186 129 72 0 46 174 572 700 4.29e-30 117

Find 50 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATATCTGCTGCTATAT+TGG 0.247414 4:-499562 None:intergenic
CTCTCCCCGTTTATTTCCTT+TGG 0.259208 4:-501188 None:intergenic
TTTCAGAAGATCAGAGCTTT+TGG 0.266073 4:+499649 MsG0480018126.01.T01:CDS
ATTGGACTGTACTAATTTAC+AGG 0.283078 4:-501298 None:intergenic
GAGGAAGGGCCAAGGCCTTT+AGG 0.330967 4:+499681 MsG0480018126.01.T01:CDS
CCAATCTATCATGAAATTAC+TGG 0.335302 4:+501316 MsG0480018126.01.T01:three_prime_UTR
TCATTAAACCATTCATCTTC+AGG 0.346274 4:-501128 None:intergenic
AATTGCAAAACATACCTATA+TGG 0.350814 4:-500978 None:intergenic
AAACGCAAGGCCAAATTTAA+CGG 0.377248 4:-501481 None:intergenic
GAATTGTGAATGAAATTATC+AGG 0.397966 4:+500919 MsG0480018126.01.T01:CDS
CCAGTAATTTCATGATAGAT+TGG 0.398861 4:-501316 None:intergenic
GATTATTGCGTTAATTTCAT+TGG 0.402660 4:+501341 MsG0480018126.01.T01:three_prime_UTR
AATGAAATTAACGCAATAAT+CGG 0.412365 4:-501339 None:intergenic
CCAAGGCCTTTAGGTCCTCT+TGG 0.424024 4:+499690 MsG0480018126.01.T01:CDS
GGAAAACCAAAGGAAATAAA+CGG 0.424170 4:+501182 MsG0480018126.01.T01:CDS
GAAAACCAAAGGAAATAAAC+GGG 0.435327 4:+501183 MsG0480018126.01.T01:CDS
AGGTCCTCTTGGTCTACAAC+AGG 0.457183 4:+499701 MsG0480018126.01.T01:CDS
TGAAATATGTCAAGATGCTA+TGG 0.457337 4:+501148 MsG0480018126.01.T01:CDS
AACGCAAGGCCAAATTTAAC+GGG 0.465874 4:-501480 None:intergenic
CCAAGAGGACCTAAAGGCCT+TGG 0.469828 4:-499690 None:intergenic
CAACAGGGATGGATCCATAT+AGG 0.475443 4:+500964 MsG0480018126.01.T01:CDS
ATAGCAGCAGATATGTTTGT+AGG 0.476239 4:+499567 MsG0480018126.01.T01:CDS
GATGCTATGGAAAGATTAAG+TGG 0.486477 4:+501161 MsG0480018126.01.T01:CDS
AGCAGATATGTTTGTAGGGA+GGG 0.495602 4:+499572 MsG0480018126.01.T01:CDS
AGACTGTTATGTTATTATCC+AGG 0.496398 4:+499512 MsG0480018126.01.T01:intron
CCGGGTGCATATCTATCTCC+TGG 0.508700 4:+499143 MsG0480018126.01.T01:CDS
TTTCATAAAACTGAACAGAA+TGG 0.516066 4:+499539 MsG0480018126.01.T01:CDS
TGACAAATACCGACCGTTGG+AGG 0.534564 4:-500883 None:intergenic
TAGCAGCAGATATGTTTGTA+GGG 0.544112 4:+499568 MsG0480018126.01.T01:CDS
GAAGCTCCTCCCATGTCCCT+AGG 0.559386 4:+499215 MsG0480018126.01.T01:CDS
TTGGACTGTACTAATTTACA+GGG 0.560286 4:-501297 None:intergenic
ATGATATTGAGGAAGGGCCA+AGG 0.574464 4:+499673 MsG0480018126.01.T01:CDS
TGTAGACCAAGAGGACCTAA+AGG 0.584749 4:-499696 None:intergenic
GTGCAGAGACAGATGCAGTA+GGG 0.590473 4:-501223 None:intergenic
AGCAAGCATTTACAAACGCA+AGG 0.592302 4:-501494 None:intergenic
TGTGAATGAAATTATCAGGA+AGG 0.593693 4:+500923 MsG0480018126.01.T01:CDS
AAATTGTCTACCTAGGGACA+TGG 0.595534 4:-499225 None:intergenic
AAGATTAAGTGGAAAACCAA+AGG 0.598349 4:+501172 MsG0480018126.01.T01:CDS
TTTGGGATGATATTGAGGAA+GGG 0.600436 4:+499667 MsG0480018126.01.T01:CDS
CCTTGACAAATACCGACCGT+TGG 0.602728 4:-500886 None:intergenic
TGTGCAGAGACAGATGCAGT+AGG 0.604544 4:-501224 None:intergenic
GTGATCTGCCTGAAGATGAA+TGG 0.612166 4:+501120 MsG0480018126.01.T01:intron
AATTGTCTACCTAGGGACAT+GGG 0.616392 4:-499224 None:intergenic
CAGCAGATATGTTTGTAGGG+AGG 0.620591 4:+499571 MsG0480018126.01.T01:CDS
CCAGGAGATAGATATGCACC+CGG 0.623144 4:-499143 None:intergenic
CCAACGGTCGGTATTTGTCA+AGG 0.628869 4:+500886 MsG0480018126.01.T01:CDS
CATACCTGTTGTAGACCAAG+AGG 0.660216 4:-499705 None:intergenic
AAAATGAAAGGGGTGCCAAG+GGG 0.724461 4:-501396 None:intergenic
TGTCTACCTAGGGACATGGG+AGG 0.725442 4:-499221 None:intergenic
AAAACCAAAGGAAATAAACG+GGG 0.769107 4:+501184 MsG0480018126.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAAAAATAATTTTAAA+TGG - Chr4:500408-500427 None:intergenic 0.0%
!! AACGTTAAAAAAAAATTATA+TGG - Chr4:500823-500842 None:intergenic 10.0%
!!! ATTTTTAAAACATTTAACTT+AGG - Chr4:499967-499986 None:intergenic 10.0%
!!! TTTTTAAAACATTTAACTTA+GGG - Chr4:499966-499985 None:intergenic 10.0%
!! AAATCAAACTAAAACATTTA+TGG - Chr4:499322-499341 None:intergenic 15.0%
!! TAAGTTATTAAGATATTCAA+AGG - Chr4:499370-499389 None:intergenic 15.0%
!! TTATTAACATTAGCTATAAT+GGG + Chr4:500295-500314 MsG0480018126.01.T01:intron 15.0%
!! TTGAATATCTTAATAACTTA+TGG + Chr4:499370-499389 MsG0480018126.01.T01:intron 15.0%
!!! CAAATTGGATAATTTTATTT+GGG + Chr4:499826-499845 MsG0480018126.01.T01:intron 15.0%
!!! TTGTCTTTATTCATTTTAAT+GGG + Chr4:501418-501437 MsG0480018126.01.T01:three_prime_UTR 15.0%
!!! TTTGTCTTTATTCATTTTAA+TGG + Chr4:501417-501436 MsG0480018126.01.T01:three_prime_UTR 15.0%
!! AAGAACTCAAGTTTATTATT+GGG - Chr4:500110-500129 None:intergenic 20.0%
!! AATAAAGACAAAAATGAAAG+GGG - Chr4:501409-501428 None:intergenic 20.0%
!! AATGAAATTAACGCAATAAT+CGG - Chr4:501342-501361 None:intergenic 20.0%
!! AGTATCAATTAAAGAAATCA+AGG - Chr4:500265-500284 None:intergenic 20.0%
!! ATTAAAACATGTAATTGAAG+AGG - Chr4:500224-500243 None:intergenic 20.0%
!! CTTATTAACATTAGCTATAA+TGG + Chr4:500294-500313 MsG0480018126.01.T01:intron 20.0%
!! GAATAAAGACAAAAATGAAA+GGG - Chr4:501410-501429 None:intergenic 20.0%
!! TGAATAAAGACAAAAATGAA+AGG - Chr4:501411-501430 None:intergenic 20.0%
!!! AAACAATTTTCAGTTAGTTT+TGG + Chr4:499754-499773 MsG0480018126.01.T01:intron 20.0%
!!! ACAAATTTTCTTATAAGTTG+TGG - Chr4:500672-500691 None:intergenic 20.0%
!!! ACAATTTTTTTACATCTTAG+TGG + Chr4:499241-499260 MsG0480018126.01.T01:intron 20.0%
!!! ATTATCCAATTTGCTTATAA+AGG - Chr4:499819-499838 None:intergenic 20.0%
!!! CAATTACATGTTTTAATCAA+AGG + Chr4:500227-500246 MsG0480018126.01.T01:intron 20.0%
!!! CAATTTTTTTACATCTTAGT+GGG + Chr4:499242-499261 MsG0480018126.01.T01:intron 20.0%
!!! GCAAATTGGATAATTTTATT+TGG + Chr4:499825-499844 MsG0480018126.01.T01:intron 20.0%
!!! TATTATTCTGTTTAAAACAC+TGG - Chr4:499922-499941 None:intergenic 20.0%
!!! TGTCTTTATTCATTTTAATG+GGG + Chr4:501419-501438 MsG0480018126.01.T01:three_prime_UTR 20.0%
! AATTGCAAAACATACCTATA+TGG - Chr4:500981-501000 None:intergenic 25.0%
! ATCCTTTCAAAAACACTTTA+GGG + Chr4:500589-500608 MsG0480018126.01.T01:intron 25.0%
! ATGCAATTGAAATTTGATCA+TGG + Chr4:499725-499744 MsG0480018126.01.T01:intron 25.0%
! CAAGAACTCAAGTTTATTAT+TGG - Chr4:500111-500130 None:intergenic 25.0%
! GAATTGTGAATGAAATTATC+AGG + Chr4:500919-500938 MsG0480018126.01.T01:CDS 25.0%
! GATTATTGCGTTAATTTCAT+TGG + Chr4:501341-501360 MsG0480018126.01.T01:three_prime_UTR 25.0%
! GTAAAAAAATTGTCTACCTA+GGG - Chr4:499234-499253 None:intergenic 25.0%
! TAATAACTTATGGAACATGT+TGG + Chr4:499380-499399 MsG0480018126.01.T01:intron 25.0%
! TATTTACATGCCTTAAACTT+TGG - Chr4:500054-500073 None:intergenic 25.0%
! TCAATTAAAGAAATCAAGGA+TGG - Chr4:500261-500280 None:intergenic 25.0%
! TGATTCCTTTATAAGCAAAT+TGG + Chr4:499811-499830 MsG0480018126.01.T01:intron 25.0%
! TGTAAAAAAATTGTCTACCT+AGG - Chr4:499235-499254 None:intergenic 25.0%
! TTTCATAAAACTGAACAGAA+TGG + Chr4:499539-499558 MsG0480018126.01.T01:CDS 25.0%
!! TTAAACTCTGCATTTTATCA+AGG - Chr4:499190-499209 None:intergenic 25.0%
!!! ATTTTTTGTCCCGTTAAATT+TGG + Chr4:501471-501490 MsG0480018126.01.T01:three_prime_UTR 25.0%
!!! GTCTTTATTCATTTTAATGG+GGG + Chr4:501420-501439 MsG0480018126.01.T01:three_prime_UTR 25.0%
!!! TTACAGAAACTGTTATTTTG+TGG + Chr4:499625-499644 MsG0480018126.01.T01:CDS 25.0%
!!! TTCTTTAGAATTTACTGATG+CGG + Chr4:500746-500765 MsG0480018126.01.T01:intron 25.0%
AAAACCAAAGGAAATAAACG+GGG + Chr4:501184-501203 MsG0480018126.01.T01:CDS 30.0%
AAACATATCTGCTGCTATAT+TGG - Chr4:499565-499584 None:intergenic 30.0%
AAATGCAGATAGAATGTTGA+TGG - Chr4:501023-501042 None:intergenic 30.0%
AAGATTAAGTGGAAAACCAA+AGG + Chr4:501172-501191 MsG0480018126.01.T01:CDS 30.0%
AGACTGTTATGTTATTATCC+AGG + Chr4:499512-499531 MsG0480018126.01.T01:intron 30.0%
AGTTGAAGCATAAACAGAAA+AGG - Chr4:499474-499493 None:intergenic 30.0%
ATTGGACTGTACTAATTTAC+AGG - Chr4:501301-501320 None:intergenic 30.0%
CATCCTTTCAAAAACACTTT+AGG + Chr4:500588-500607 MsG0480018126.01.T01:intron 30.0%
CCAAACTAAACCAAAGTTTA+AGG + Chr4:500041-500060 MsG0480018126.01.T01:intron 30.0%
CCAATCTATCATGAAATTAC+TGG + Chr4:501316-501335 MsG0480018126.01.T01:three_prime_UTR 30.0%
CCAGTAATTTCATGATAGAT+TGG - Chr4:501319-501338 None:intergenic 30.0%
GAAAACCAAAGGAAATAAAC+GGG + Chr4:501183-501202 MsG0480018126.01.T01:CDS 30.0%
GCATTTCACATGTATTTATC+TGG - Chr4:500454-500473 None:intergenic 30.0%
GGAAAACCAAAGGAAATAAA+CGG + Chr4:501182-501201 MsG0480018126.01.T01:CDS 30.0%
GGGCACATTTATTTACTTAT+TGG + Chr4:500609-500628 MsG0480018126.01.T01:intron 30.0%
GTTCAAAATGTTCTTTCAAG+TGG - Chr4:500784-500803 None:intergenic 30.0%
TAAACAAGATGTTTCGAAGT+TGG - Chr4:500366-500385 None:intergenic 30.0%
TAAATACATGTGAAATGCAC+AGG + Chr4:500456-500475 MsG0480018126.01.T01:intron 30.0%
TCATTAAACCATTCATCTTC+AGG - Chr4:501131-501150 None:intergenic 30.0%
TGAAATATGTCAAGATGCTA+TGG + Chr4:501148-501167 MsG0480018126.01.T01:CDS 30.0%
TGTGAATGAAATTATCAGGA+AGG + Chr4:500923-500942 MsG0480018126.01.T01:CDS 30.0%
TTGGACTGTACTAATTTACA+GGG - Chr4:501300-501319 None:intergenic 30.0%
TTTGGATACTTTGCATTCTT+CGG - Chr4:500026-500045 None:intergenic 30.0%
! AATACTAACCTTTTGGATTC+TGG + Chr4:500564-500583 MsG0480018126.01.T01:intron 30.0%
! CCTTAAACTTTGGTTTAGTT+TGG - Chr4:500044-500063 None:intergenic 30.0%
! GTCAATCAATACTAACCTTT+TGG + Chr4:500557-500576 MsG0480018126.01.T01:intron 30.0%
! TGTTTAAAACACTGGTTGTT+AGG - Chr4:499914-499933 None:intergenic 30.0%
! TTTTGTTGAGTTTTACATGC+CGG + Chr4:499124-499143 MsG0480018126.01.T01:CDS 30.0%
!! CTAAAGTGTTTTTGAAAGGA+TGG - Chr4:500590-500609 None:intergenic 30.0%
!! TATCTATCTCCTGGTTTTTA+TGG + Chr4:499152-499171 MsG0480018126.01.T01:CDS 30.0%
!! TTGTGGAGAATTTTCTGAAA+TGG - Chr4:500655-500674 None:intergenic 30.0%
!!! TAACGTTGTGCAGTTTTATT+TGG + Chr4:500836-500855 MsG0480018126.01.T01:intron 30.0%
!!! TGTGGAGAATTTTCTGAAAT+GGG - Chr4:500654-500673 None:intergenic 30.0%
AAACGCAAGGCCAAATTTAA+CGG - Chr4:501484-501503 None:intergenic 35.0%
AAGAAACTTAGCTGTGTATG+TGG - Chr4:500167-500186 None:intergenic 35.0%
ATAGCAGCAGATATGTTTGT+AGG + Chr4:499567-499586 MsG0480018126.01.T01:CDS 35.0%
CTGAAACACTGATACCTAAT+AGG + Chr4:499780-499799 MsG0480018126.01.T01:intron 35.0%
GAATCAATTCGTGTCCTATT+AGG - Chr4:499797-499816 None:intergenic 35.0%
GATGCTATGGAAAGATTAAG+TGG + Chr4:501161-501180 MsG0480018126.01.T01:CDS 35.0%
TAGCAGCAGATATGTTTGTA+GGG + Chr4:499568-499587 MsG0480018126.01.T01:CDS 35.0%
TATTCCACTCCATAAAAACC+AGG - Chr4:499164-499183 None:intergenic 35.0%
! TTCAGAAGATCAGAGCTTTT+GGG + Chr4:499650-499669 MsG0480018126.01.T01:CDS 35.0%
! TTTCAGAAGATCAGAGCTTT+TGG + Chr4:499649-499668 MsG0480018126.01.T01:CDS 35.0%
! TTTGGGATGATATTGAGGAA+GGG + Chr4:499667-499686 MsG0480018126.01.T01:CDS 35.0%
! TTTGTTGAGTTTTACATGCC+GGG + Chr4:499125-499144 MsG0480018126.01.T01:CDS 35.0%
!! AGAATGTTGATGGTGAAACA+TGG - Chr4:501013-501032 None:intergenic 35.0%
!! TCAGTTTTATGAAAAGCTCC+TGG - Chr4:499533-499552 None:intergenic 35.0%
!! TGCCCTAAAGTGTTTTTGAA+AGG - Chr4:500594-500613 None:intergenic 35.0%
!!! GAATTTTCTGAAATGGGTGT+TGG - Chr4:500648-500667 None:intergenic 35.0%
!!! TTTTACATCTTAGTGGGTTC+AGG + Chr4:499248-499267 MsG0480018126.01.T01:intron 35.0%
!!! TTTTGGGATGATATTGAGGA+AGG + Chr4:499666-499685 MsG0480018126.01.T01:CDS 35.0%
AAATTGTCTACCTAGGGACA+TGG - Chr4:499228-499247 None:intergenic 40.0%
AACGCAAGGCCAAATTTAAC+GGG - Chr4:501483-501502 None:intergenic 40.0%
AATTGTCTACCTAGGGACAT+GGG - Chr4:499227-499246 None:intergenic 40.0%
AGCAAGCATTTACAAACGCA+AGG - Chr4:501497-501516 None:intergenic 40.0%
AGCAGATATGTTTGTAGGGA+GGG + Chr4:499572-499591 MsG0480018126.01.T01:CDS 40.0%
TGGTTGTTAGGAACTTGGAT+AGG - Chr4:499902-499921 None:intergenic 40.0%
! AACACTGGTTGTTAGGAACT+TGG - Chr4:499907-499926 None:intergenic 40.0%
! ATGATGTTTTTCTCACCCCT+TGG + Chr4:501381-501400 MsG0480018126.01.T01:three_prime_UTR 40.0%
! ATGTCAGCATTTTCTGCAAC+AGG + Chr4:500948-500967 MsG0480018126.01.T01:CDS 40.0%
! ATTTGGGACGCATCTTTGTA+AGG + Chr4:499842-499861 MsG0480018126.01.T01:intron 40.0%
! GCATTTGCAGTTGTTTCCAT+TGG + Chr4:501037-501056 MsG0480018126.01.T01:intron 40.0%
! GTTGTTTCCATTGGAAGTTG+TGG + Chr4:501046-501065 MsG0480018126.01.T01:intron 40.0%
! TGTCAGCATTTTCTGCAACA+GGG + Chr4:500949-500968 MsG0480018126.01.T01:CDS 40.0%
!! AAAAATGAAAGGGGTGCCAA+GGG - Chr4:501400-501419 None:intergenic 40.0%
!! ATCTCCTGGTTTTTATGGAG+TGG + Chr4:499157-499176 MsG0480018126.01.T01:CDS 40.0%
!! CATCTTTGTAAGGCTAGTCT+TGG + Chr4:499852-499871 MsG0480018126.01.T01:intron 40.0%
!!! GAGCTTTTGGGATGATATTG+AGG + Chr4:499662-499681 MsG0480018126.01.T01:CDS 40.0%
AACTTGGATAGGTCAGTGCT+TGG - Chr4:499891-499910 None:intergenic 45.0%
AAGGATGGCCAGAATCCAAA+AGG - Chr4:500575-500594 None:intergenic 45.0%
ATGATATTGAGGAAGGGCCA+AGG + Chr4:499673-499692 MsG0480018126.01.T01:CDS 45.0%
CAACAGGGATGGATCCATAT+AGG + Chr4:500964-500983 MsG0480018126.01.T01:CDS 45.0%
CAGCAGATATGTTTGTAGGG+AGG + Chr4:499571-499590 MsG0480018126.01.T01:CDS 45.0%
CATACCTGTTGTAGACCAAG+AGG - Chr4:499708-499727 None:intergenic 45.0%
CTCTCCCCGTTTATTTCCTT+TGG - Chr4:501191-501210 None:intergenic 45.0%
GTGATCTGCCTGAAGATGAA+TGG + Chr4:501120-501139 MsG0480018126.01.T01:intron 45.0%
TGTAGACCAAGAGGACCTAA+AGG - Chr4:499699-499718 None:intergenic 45.0%
TTCAGAGCCACAACTTCCAA+TGG - Chr4:501056-501075 None:intergenic 45.0%
! AGCATTTTCTGCAACAGGGA+TGG + Chr4:500953-500972 MsG0480018126.01.T01:CDS 45.0%
! GTTGTGTGTTTTGCCTCCAA+CGG + Chr4:500870-500889 MsG0480018126.01.T01:CDS 45.0%
!! AAAATGAAAGGGGTGCCAAG+GGG - Chr4:501399-501418 None:intergenic 45.0%
!! CAAAAATGAAAGGGGTGCCA+AGG - Chr4:501401-501420 None:intergenic 45.0%
AGGTCCTCTTGGTCTACAAC+AGG + Chr4:499701-499720 MsG0480018126.01.T01:CDS 50.0%
CCAACGGTCGGTATTTGTCA+AGG + Chr4:500886-500905 MsG0480018126.01.T01:CDS 50.0%
CCAGGAGATAGATATGCACC+CGG - Chr4:499146-499165 None:intergenic 50.0%
CCTTGACAAATACCGACCGT+TGG - Chr4:500889-500908 None:intergenic 50.0%
GTGCAGAGACAGATGCAGTA+GGG - Chr4:501226-501245 None:intergenic 50.0%
TGACAAATACCGACCGTTGG+AGG - Chr4:500886-500905 None:intergenic 50.0%
TGTGCAGAGACAGATGCAGT+AGG - Chr4:501227-501246 None:intergenic 50.0%
! AGAAGCACATGCAGCGATGT+TGG - Chr4:500730-500749 None:intergenic 50.0%
! TGTGTTTTGCCTCCAACGGT+CGG + Chr4:500874-500893 MsG0480018126.01.T01:CDS 50.0%
!! CATCTTAGTGGGTTCAGGCT+TGG + Chr4:499253-499272 MsG0480018126.01.T01:intron 50.0%
CCAAGAGGACCTAAAGGCCT+TGG - Chr4:499693-499712 None:intergenic 55.0%
CCAAGGCCTTTAGGTCCTCT+TGG + Chr4:499690-499709 MsG0480018126.01.T01:CDS 55.0%
CCGGGTGCATATCTATCTCC+TGG + Chr4:499143-499162 MsG0480018126.01.T01:CDS 55.0%
TGTCTACCTAGGGACATGGG+AGG - Chr4:499224-499243 None:intergenic 55.0%
GAAGCTCCTCCCATGTCCCT+AGG + Chr4:499215-499234 MsG0480018126.01.T01:CDS 60.0%
GAGGAAGGGCCAAGGCCTTT+AGG + Chr4:499681-499700 MsG0480018126.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 499119 501556 499119 ID=MsG0480018126.01;Name=MsG0480018126.01
Chr4 mRNA 499119 501556 499119 ID=MsG0480018126.01.T01;Parent=MsG0480018126.01;Name=MsG0480018126.01.T01;_AED=0.47;_eAED=0.54;_QI=0|0.66|0.5|1|0.66|0.5|4|273|208
Chr4 exon 499119 499236 499119 ID=MsG0480018126.01.T01:exon:618;Parent=MsG0480018126.01.T01
Chr4 exon 499514 499722 499514 ID=MsG0480018126.01.T01:exon:619;Parent=MsG0480018126.01.T01
Chr4 exon 500849 500985 500849 ID=MsG0480018126.01.T01:exon:620;Parent=MsG0480018126.01.T01
Chr4 exon 501121 501556 501121 ID=MsG0480018126.01.T01:exon:621;Parent=MsG0480018126.01.T01
Chr4 CDS 499119 499236 499119 ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4 CDS 499514 499722 499514 ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4 CDS 500849 500985 500849 ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4 CDS 501121 501283 501121 ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4 three_prime_UTR 501284 501556 501284 ID=MsG0480018126.01.T01:three_prime_utr;Parent=MsG0480018126.01.T01
Gene Sequence

>MsG0480018126.01.T01

ATGCTTTTTGTTGAGTTTTACATGCCGGGTGCATATCTATCTCCTGGTTTTTATGGAGTGGAATATAGCCTTGATAAAATGCAGAGTTTAAACATTGAAGCTCCTCCCATGTCCCTAGACTGTTATGTTATTATCCAGGAGCTTTTCATAAAACTGAACAGAATGGCCAATATAGCAGCAGATATGTTTGTAGGGAGGGAACGATTTGCTACGTTGCTCTTGATGAGACTTACAGAAACTGTTATTTTGTGGATTTCAGAAGATCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCTCTTGGTCTACAACAGTTTTATTTGGATATGAAGTTTGTTGTGTGTTTTGCCTCCAACGGTCGGTATTTGTCAAGGAATTTGCAAAGAATTGTGAATGAAATTATCAGGAAGGCAATGTCAGCATTTTCTGCAACAGGGATGGATCCATATAGTGATCTGCCTGAAGATGAATGGTTTAATGAAATATGTCAAGATGCTATGGAAAGATTAAGTGGAAAACCAAAGGAAATAAACGGGGAGAGAGAACTTAGTAGCCCTACTGCATCTGTCTCTGCACAATCAATTTCATCTGTCAGATCTCATAATAGTTCATAA

Protein sequence

>MsG0480018126.01.T01

MLFVEFYMPGAYLSPGFYGVEYSLDKMQSLNIEAPPMSLDCYVIIQELFIKLNRMANIAADMFVGRERFATLLLMRLTETVILWISEDQSFWDDIEEGPRPLGPLGLQQFYLDMKFVVCFASNGRYLSRNLQRIVNEIIRKAMSAFSATGMDPYSDLPEDEWFNEICQDAMERLSGKPKEINGERELSSPTASVSAQSISSVRSHNSS*