AlfalfaGEDB | MsG0480018126.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018126.01

KEGG: K19986
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018126.01.T01	XP_003604146.2	98.795	166	2	0	43	208	599	764	1.28E-111	346

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018126.01.T01	Q9LTB0	73.333	180	44	2	30	207	574	751	1.17E-79	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018126.01.T01	G7JVK6	98.795	166	2	0	43	208	599	764	6.12e-112	346

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0480018126.01	0.827349	1.643589e-54	1.582811e-51
MsG0080048058.01	MsG0480018126.01	0.809908	1.499761e-50	8.915682e-48
MsG0080048964.01	MsG0480018126.01	0.831277	1.828807e-55	1.975017e-52
MsG0080049059.01	MsG0480018126.01	0.824082	9.787157e-54	8.581498e-51
MsG0180000001.01	MsG0480018126.01	0.827565	1.458558e-54	1.413198e-51
MsG0180000197.01	MsG0480018126.01	0.815407	9.394428e-52	6.471352e-49
MsG0180000235.01	MsG0480018126.01	0.854490	1.189054e-61	2.660075e-58
MsG0180000293.01	MsG0480018126.01	0.880044	7.586870e-70	4.211863e-66
MsG0180000585.01	MsG0480018126.01	0.816695	4.843769e-52	3.456311e-49
MsG0180000799.01	MsG0480018126.01	0.833869	4.162586e-56	4.856461e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018126.01.T01	MTR_4g005930	98.795	166	2	0	43	208	599	764	1.55e-115	346
MsG0480018126.01.T01	MTR_6g045363	60.784	153	58	1	44	196	611	761	5.97e-58	194
MsG0480018126.01.T01	MTR_1g111120	57.432	148	63	0	44	191	607	754	1.83e-54	185
MsG0480018126.01.T01	MTR_4g083940	45.736	129	70	0	46	174	583	711	8.13e-30	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018126.01.T01	AT5G49830	73.333	180	44	2	30	207	574	751	1.19e-80	255
MsG0480018126.01.T01	AT5G49830	73.333	180	44	2	30	207	605	782	2.09e-80	255
MsG0480018126.01.T01	AT5G49830	73.333	180	44	2	30	207	636	813	6.79e-80	254
MsG0480018126.01.T01	AT1G10385	64.780	159	54	2	44	201	596	753	3.61e-65	214
MsG0480018126.01.T01	AT1G10180	44.186	129	72	0	46	174	572	700	4.29e-30	117

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Find 50 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAGGAAATAAACG+GGG	0.769107	4:+501184	MsG0480018126.01.T01:CDS
AAAATGAAAGGGGTGCCAAG+GGG	0.724461	4:-501396	None:intergenic
AAACATATCTGCTGCTATAT+TGG	0.247414	4:-499562	None:intergenic
AAACGCAAGGCCAAATTTAA+CGG	0.377248	4:-501481	None:intergenic
AAATTGTCTACCTAGGGACA+TGG	0.595534	4:-499225	None:intergenic
AACGCAAGGCCAAATTTAAC+GGG	0.465874	4:-501480	None:intergenic
AAGATTAAGTGGAAAACCAA+AGG	0.598349	4:+501172	MsG0480018126.01.T01:CDS
AATGAAATTAACGCAATAAT+CGG	0.412365	4:-501339	None:intergenic
AATTGCAAAACATACCTATA+TGG	0.350814	4:-500978	None:intergenic
AATTGTCTACCTAGGGACAT+GGG	0.616392	4:-499224	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAAAGGAAATAAACG+GGG	+	Chr4:501184-501203	MsG0480018126.01.T01:CDS	30.0%
AAACATATCTGCTGCTATAT+TGG	-	Chr4:499565-499584	None:intergenic	30.0%
AAATGCAGATAGAATGTTGA+TGG	-	Chr4:501023-501042	None:intergenic	30.0%
AAGATTAAGTGGAAAACCAA+AGG	+	Chr4:501172-501191	MsG0480018126.01.T01:CDS	30.0%
AGACTGTTATGTTATTATCC+AGG	+	Chr4:499512-499531	MsG0480018126.01.T01:intron	30.0%
AGTTGAAGCATAAACAGAAA+AGG	-	Chr4:499474-499493	None:intergenic	30.0%
ATTGGACTGTACTAATTTAC+AGG	-	Chr4:501301-501320	None:intergenic	30.0%
CATCCTTTCAAAAACACTTT+AGG	+	Chr4:500588-500607	MsG0480018126.01.T01:intron	30.0%
CCAAACTAAACCAAAGTTTA+AGG	+	Chr4:500041-500060	MsG0480018126.01.T01:intron	30.0%
CCAATCTATCATGAAATTAC+TGG	+	Chr4:501316-501335	MsG0480018126.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	499119	501556	499119	ID=MsG0480018126.01;Name=MsG0480018126.01
Chr4	mRNA	499119	501556	499119	ID=MsG0480018126.01.T01;Parent=MsG0480018126.01;Name=MsG0480018126.01.T01;_AED=0.47;_eAED=0.54;_QI=0\|0.66\|0.5\|1\|0.66\|0.5\|4\|273\|208
Chr4	exon	499119	499236	499119	ID=MsG0480018126.01.T01:exon:618;Parent=MsG0480018126.01.T01
Chr4	exon	499514	499722	499514	ID=MsG0480018126.01.T01:exon:619;Parent=MsG0480018126.01.T01
Chr4	exon	500849	500985	500849	ID=MsG0480018126.01.T01:exon:620;Parent=MsG0480018126.01.T01
Chr4	exon	501121	501556	501121	ID=MsG0480018126.01.T01:exon:621;Parent=MsG0480018126.01.T01
Chr4	CDS	499119	499236	499119	ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4	CDS	499514	499722	499514	ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4	CDS	500849	500985	500849	ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4	CDS	501121	501283	501121	ID=MsG0480018126.01.T01:cds;Parent=MsG0480018126.01.T01
Chr4	three_prime_UTR	501284	501556	501284	ID=MsG0480018126.01.T01:three_prime_utr;Parent=MsG0480018126.01.T01

Gene Sequence

>MsG0480018126.01.T01

ATGCTTTTTGTTGAGTTTTACATGCCGGGTGCATATCTATCTCCTGGTTTTTATGGAGTGGAATATAGCCTTGATAAAATGCAGAGTTTAAACATTGAAGCTCCTCCCATGTCCCTAGACTGTTATGTTATTATCCAGGAGCTTTTCATAAAACTGAACAGAATGGCCAATATAGCAGCAGATATGTTTGTAGGGAGGGAACGATTTGCTACGTTGCTCTTGATGAGACTTACAGAAACTGTTATTTTGTGGATTTCAGAAGATCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCTCTTGGTCTACAACAGTTTTATTTGGATATGAAGTTTGTTGTGTGTTTTGCCTCCAACGGTCGGTATTTGTCAAGGAATTTGCAAAGAATTGTGAATGAAATTATCAGGAAGGCAATGTCAGCATTTTCTGCAACAGGGATGGATCCATATAGTGATCTGCCTGAAGATGAATGGTTTAATGAAATATGTCAAGATGCTATGGAAAGATTAAGTGGAAAACCAAAGGAAATAAACGGGGAGAGAGAACTTAGTAGCCCTACTGCATCTGTCTCTGCACAATCAATTTCATCTGTCAGATCTCATAATAGTTCATAA

Protein sequence

>MsG0480018126.01.T01

MLFVEFYMPGAYLSPGFYGVEYSLDKMQSLNIEAPPMSLDCYVIIQELFIKLNRMANIAADMFVGRERFATLLLMRLTETVILWISEDQSFWDDIEEGPRPLGPLGLQQFYLDMKFVVCFASNGRYLSRNLQRIVNEIIRKAMSAFSATGMDPYSDLPEDEWFNEICQDAMERLSGKPKEINGERELSSPTASVSAQSISSVRSHNSS*