Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023674.01.T01 | XP_013447177.1 | 76.712 | 219 | 13 | 1 | 1 | 219 | 1 | 181 | 3.06E-110 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048557.01 | MsG0480023674.01 | 0.811691 | 6.168180e-51 | 3.843515e-48 |
| MsG0080048754.01 | MsG0480023674.01 | 0.838523 | 2.734877e-57 | 3.672437e-54 |
| MsG0080048800.01 | MsG0480023674.01 | 0.834253 | 3.335452e-56 | 3.936509e-53 |
| MsG0180000567.01 | MsG0480023674.01 | -0.845691 | 3.466992e-59 | 5.825717e-56 |
| MsG0180003409.01 | MsG0480023674.01 | -0.804202 | 2.418696e-49 | 1.239511e-46 |
| MsG0180003898.01 | MsG0480023674.01 | -0.800518 | 1.387860e-48 | 6.475404e-46 |
| MsG0180004300.01 | MsG0480023674.01 | -0.812197 | 4.784768e-51 | 3.022634e-48 |
| MsG0180005817.01 | MsG0480023674.01 | 0.821988 | 3.011902e-53 | 2.488707e-50 |
| MsG0180006226.01 | MsG0480023674.01 | 0.819525 | 1.109611e-52 | 8.559771e-50 |
| MsG0280010695.01 | MsG0480023674.01 | 0.821747 | 3.426240e-53 | 2.811599e-50 |
| MsG0280010868.01 | MsG0480023674.01 | -0.807220 | 5.622194e-50 | 3.113813e-47 |
| MsG0280011299.01 | MsG0480023674.01 | 0.835856 | 1.314994e-56 | 1.628285e-53 |
| MsG0380013953.01 | MsG0480023674.01 | 0.806604 | 7.588201e-50 | 4.136100e-47 |
| MsG0380013957.01 | MsG0480023674.01 | 0.802839 | 4.636402e-49 | 2.294599e-46 |
| MsG0380013967.01 | MsG0480023674.01 | 0.801157 | 1.027945e-48 | 4.874562e-46 |
| MsG0380014006.01 | MsG0480023674.01 | 0.811152 | 8.076454e-51 | 4.961761e-48 |
| MsG0380014161.01 | MsG0480023674.01 | -0.818189 | 2.232228e-52 | 1.659455e-49 |
| MsG0480018788.01 | MsG0480023674.01 | 0.804037 | 2.617630e-49 | 1.335862e-46 |
| MsG0480019836.01 | MsG0480023674.01 | 0.803639 | 3.166488e-49 | 1.599482e-46 |
| MsG0480019975.01 | MsG0480023674.01 | 0.821437 | 4.040308e-53 | 3.286874e-50 |
| MsG0480021912.01 | MsG0480023674.01 | 0.806914 | 6.526516e-50 | 3.585998e-47 |
| MsG0480022301.01 | MsG0480023674.01 | -0.825793 | 3.861447e-54 | 3.555611e-51 |
| MsG0480022480.01 | MsG0480023674.01 | -0.827185 | 1.798937e-54 | 1.723972e-51 |
| MsG0480022530.01 | MsG0480023674.01 | -0.813786 | 2.145568e-51 | 1.414420e-48 |
| MsG0480022971.01 | MsG0480023674.01 | -0.814501 | 1.492061e-51 | 1.002920e-48 |
| MsG0480023674.01 | MsG0580024478.01 | -0.815044 | 1.131107e-51 | 7.714689e-49 |
| MsG0480023674.01 | MsG0580024999.01 | -0.817759 | 2.790884e-52 | 2.050522e-49 |
| MsG0480023674.01 | MsG0580026606.01 | -0.803428 | 3.503092e-49 | 1.759913e-46 |
| MsG0480023674.01 | MsG0580027626.01 | -0.802318 | 5.938208e-49 | 2.900167e-46 |
| MsG0480023674.01 | MsG0580028307.01 | -0.835039 | 2.116172e-56 | 2.556804e-53 |
| MsG0480023674.01 | MsG0680034395.01 | -0.804502 | 2.094751e-49 | 1.081786e-46 |
| MsG0480023674.01 | MsG0680034676.01 | 0.805132 | 1.547333e-49 | 8.122190e-47 |
| MsG0480023674.01 | MsG0780037109.01 | -0.808022 | 3.797962e-50 | 2.147922e-47 |
| MsG0480023674.01 | MsG0780038837.01 | -0.822247 | 2.623902e-53 | 2.184259e-50 |
| MsG0480023674.01 | MsG0780038857.01 | -0.833769 | 4.408012e-56 | 5.127188e-53 |
| MsG0480023674.01 | MsG0780038945.01 | -0.807565 | 4.750368e-50 | 2.654518e-47 |
| MsG0480023674.01 | MsG0780039450.01 | -0.800914 | 1.152540e-48 | 5.431962e-46 |
| MsG0480023674.01 | MsG0780039462.01 | 0.868758 | 5.144912e-66 | 1.883121e-62 |
| MsG0480023674.01 | MsG0780039622.01 | 0.802011 | 6.868748e-49 | 3.328169e-46 |
| MsG0480023674.01 | MsG0780040723.01 | -0.811300 | 7.502424e-51 | 4.626906e-48 |
| MsG0480023674.01 | MsG0780041014.01 | 0.846570 | 1.998535e-59 | 3.454520e-56 |
| MsG0480023674.01 | MsG0780041637.01 | 0.849763 | 2.623918e-60 | 5.027173e-57 |
| MsG0480023674.01 | MsG0880042957.01 | -0.808238 | 3.416870e-50 | 1.943496e-47 |
| MsG0480023674.01 | MsG0880043921.01 | -0.807221 | 5.618741e-50 | 3.111997e-47 |
| MsG0480023674.01 | MsG0880046099.01 | 0.817490 | 3.210545e-52 | 2.341454e-49 |
| MsG0480023674.01 | MsG0880046167.01 | 0.824704 | 6.988477e-54 | 6.238383e-51 |
| MsG0480023674.01 | MsG0880046251.01 | 0.863438 | 2.488773e-64 | 7.543991e-61 |
| MsG0480023674.01 | MsG0880046331.01 | 0.822206 | 2.681209e-53 | 2.229351e-50 |
| MsG0480023674.01 | MsG0880046779.01 | -0.819468 | 1.143337e-52 | 8.806074e-50 |
| MsG0480023674.01 | MsG0880047012.01 | -0.856537 | 3.009799e-62 | 7.208158e-59 |
| MsG0380015455.01 | MsG0480023674.01 | -0.825791 | 3.866766e-54 | 3.560243e-51 |
| MsG0380016018.01 | MsG0480023674.01 | -0.800031 | 1.743993e-48 | 8.036930e-46 |
| MsG0380016273.01 | MsG0480023674.01 | -0.804005 | 2.658994e-49 | 1.355838e-46 |
| MsG0380016367.01 | MsG0480023674.01 | 0.832079 | 1.159790e-55 | 1.282649e-52 |
| MsG0380017135.01 | MsG0480023674.01 | 0.869091 | 4.014686e-66 | 1.487548e-62 |
| MsG0380017935.01 | MsG0480023674.01 | 0.828471 | 8.827738e-55 | 8.782786e-52 |
| MsG0380018058.01 | MsG0480023674.01 | 0.818891 | 1.546718e-52 | 1.172444e-49 |
| MsG0480018333.01 | MsG0480023674.01 | -0.806882 | 6.627336e-50 | 3.638412e-47 |
| MsG0480018390.01 | MsG0480023674.01 | 0.832839 | 7.519370e-56 | 8.505190e-53 |
| MsG0280007071.01 | MsG0480023674.01 | -0.806263 | 8.955945e-50 | 4.839573e-47 |
| MsG0280007089.01 | MsG0480023674.01 | -0.827094 | 1.891131e-54 | 1.807445e-51 |
| MsG0280007133.01 | MsG0480023674.01 | 0.825049 | 5.793853e-54 | 5.223145e-51 |
| MsG0280008856.01 | MsG0480023674.01 | -0.805301 | 1.426419e-49 | 7.519810e-47 |
| MsG0280008863.01 | MsG0480023674.01 | 0.800482 | 1.411850e-48 | 6.581132e-46 |
| MsG0280008912.01 | MsG0480023674.01 | 0.800661 | 1.298161e-48 | 6.078921e-46 |
| MsG0280010173.01 | MsG0480023674.01 | -0.826942 | 2.056698e-54 | 1.956994e-51 |
| MsG0280010275.01 | MsG0480023674.01 | 0.806280 | 8.879669e-50 | 4.800313e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023674.01.T01 | MTR_8g099345 | 76.712 | 219 | 13 | 1 | 1 | 219 | 1 | 181 | 3.71e-114 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023674.01.T01 | AT1G64355 | 58.382 | 173 | 27 | 4 | 32 | 200 | 43 | 174 | 1.71e-57 | 181 |
| MsG0480023674.01.T01 | AT1G64355 | 69.792 | 96 | 22 | 3 | 32 | 123 | 43 | 135 | 1.12e-36 | 126 |
| MsG0480023674.01.T01 | AT1G64355 | 68.182 | 88 | 21 | 3 | 32 | 115 | 43 | 127 | 4.55e-31 | 111 |
Find 57 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTAATTTATCATTAAT+TGG | 0.227652 | 4:+88444203 | MsG0480023674.01.T01:three_prime_UTR |
| TCGGATGTGCCTCCAAATTT+TGG | 0.228216 | 4:+88444113 | MsG0480023674.01.T01:three_prime_UTR |
| ACAGTTCCAGCTGGAATTTA+TGG | 0.258898 | 4:+88443586 | MsG0480023674.01.T01:intron |
| TGATCATTGCACATCAAAAT+TGG | 0.269030 | 4:-88444236 | None:intergenic |
| GGTGAGGTTAGGAGAAGTTT+TGG | 0.272109 | 4:-88443424 | None:intergenic |
| TTGAAGGGTTGATAAGTTTA+GGG | 0.291880 | 4:-88443194 | None:intergenic |
| GTTGAAGGGTTGATAAGTTT+AGG | 0.306773 | 4:-88443195 | None:intergenic |
| CACTAACTTGTTCATTGTGT+TGG | 0.314311 | 4:+88443955 | MsG0480023674.01.T01:CDS |
| TTAAATGAAAATCACGTTGC+AGG | 0.357937 | 4:-88443224 | None:intergenic |
| ACTAACTTGTTCATTGTGTT+GGG | 0.374119 | 4:+88443956 | MsG0480023674.01.T01:CDS |
| TTGACAGCTAAGGTGCATTA+TGG | 0.386555 | 4:+88443875 | MsG0480023674.01.T01:intron |
| TGCCCCTGGGTGTTGATCCA+TGG | 0.395407 | 4:+88443310 | MsG0480023674.01.T01:CDS |
| AATCAGAAAAGCTGGAAATT+CGG | 0.416724 | 4:+88443991 | MsG0480023674.01.T01:CDS |
| TCTCCTAACCTCACCCTCTT+CGG | 0.418605 | 4:+88443432 | MsG0480023674.01.T01:CDS |
| AAACCGAAGAGGGTGAGGTT+AGG | 0.440423 | 4:-88443435 | None:intergenic |
| GATCGTGTGTGGATTGCCCC+TGG | 0.440978 | 4:+88443296 | MsG0480023674.01.T01:CDS |
| TCTAATGTGGATTGGTTACA+TGG | 0.443829 | 4:+88443908 | MsG0480023674.01.T01:CDS |
| CTTCTTTGTCTAATGTGGAT+TGG | 0.447286 | 4:+88443900 | MsG0480023674.01.T01:CDS |
| ATGTGGATTGGTTACATGGT+GGG | 0.450371 | 4:+88443912 | MsG0480023674.01.T01:CDS |
| AACCGAACTGGACATTAAAC+CGG | 0.454280 | 4:+88443669 | MsG0480023674.01.T01:CDS |
| TGCCGGTTTAATGTCCAGTT+CGG | 0.454901 | 4:-88443671 | None:intergenic |
| TCGAAGGAGGAGAAGAAACC+TGG | 0.458784 | 4:+88444028 | MsG0480023674.01.T01:CDS |
| TGGAACTTCTTTGTCTAATG+TGG | 0.464776 | 4:+88443895 | MsG0480023674.01.T01:CDS |
| AGAGAGGGAATCAGAAAAGC+TGG | 0.466045 | 4:+88443983 | MsG0480023674.01.T01:CDS |
| GCCCCTGGGTGTTGATCCAT+GGG | 0.473465 | 4:+88443311 | MsG0480023674.01.T01:CDS |
| CGTTGCAGGAAGGTCGTTGA+AGG | 0.474175 | 4:-88443210 | None:intergenic |
| TGGAGGCACATCCGAGTCAA+TGG | 0.486922 | 4:-88444105 | None:intergenic |
| ATTGTGTTGGGTTTGAGAGA+GGG | 0.496509 | 4:+88443968 | MsG0480023674.01.T01:CDS |
| AGCGATGCTCTGTGAATCAA+TGG | 0.506212 | 4:-88443340 | None:intergenic |
| TGTAATTTGTTCCATTGACT+CGG | 0.518063 | 4:+88444094 | MsG0480023674.01.T01:three_prime_UTR |
| GGAGAAGAAACCTGGGATGA+AGG | 0.519084 | 4:+88444036 | MsG0480023674.01.T01:CDS |
| GACTCACCATAAATTCCAGC+TGG | 0.525068 | 4:-88443592 | None:intergenic |
| CATTGTGTTGGGTTTGAGAG+AGG | 0.529587 | 4:+88443967 | MsG0480023674.01.T01:CDS |
| GTGCCCATGGATCAACACCC+AGG | 0.532974 | 4:-88443314 | None:intergenic |
| AAGTACAAGAAACCAATGTA+AGG | 0.534146 | 4:-88443390 | None:intergenic |
| CAAGTTAGTGAGAGTGAGAA+GGG | 0.535305 | 4:-88443942 | None:intergenic |
| TGTGGATTGGTTACATGGTG+GGG | 0.539691 | 4:+88443913 | MsG0480023674.01.T01:CDS |
| AGTAGAAACCGAAGAGGGTG+AGG | 0.547358 | 4:-88443440 | None:intergenic |
| ATGCTGCTGTTGAACCATGC+CGG | 0.548883 | 4:-88443688 | None:intergenic |
| TGCCCATGGATCAACACCCA+GGG | 0.560771 | 4:-88443313 | None:intergenic |
| AGCAACTAGACCTTCATCCC+AGG | 0.562545 | 4:-88444046 | None:intergenic |
| AAATCACAGCCAAAATTTGG+AGG | 0.572411 | 4:-88444122 | None:intergenic |
| ATCGTGTGTGGATTGCCCCT+GGG | 0.578639 | 4:+88443297 | MsG0480023674.01.T01:CDS |
| GGAACAAATTACAATAACAC+TGG | 0.586606 | 4:-88444084 | None:intergenic |
| AATGTGGATTGGTTACATGG+TGG | 0.588190 | 4:+88443911 | MsG0480023674.01.T01:CDS |
| ATGAAAATCACGTTGCAGGA+AGG | 0.588711 | 4:-88443220 | None:intergenic |
| GATTTACAGAGAGATACAAC+AGG | 0.591539 | 4:-88443171 | None:intergenic |
| ACAAGTTAGTGAGAGTGAGA+AGG | 0.592216 | 4:-88443943 | None:intergenic |
| AACTGGACATTAAACCGGCA+TGG | 0.599583 | 4:+88443674 | MsG0480023674.01.T01:CDS |
| AAATTACAATAACACTGGCA+TGG | 0.603957 | 4:-88444079 | None:intergenic |
| TGAAGGGTTGATAAGTTTAG+GGG | 0.614651 | 4:-88443193 | None:intergenic |
| CGAAGGAGGAGAAGAAACCT+GGG | 0.616213 | 4:+88444029 | MsG0480023674.01.T01:CDS |
| GTTGCAGGAAGGTCGTTGAA+GGG | 0.617837 | 4:-88443209 | None:intergenic |
| AAGAGAACAGTGATCGTGTG+TGG | 0.618841 | 4:+88443285 | MsG0480023674.01.T01:CDS |
| GAATCAATGGAAGGTGCCCA+TGG | 0.621299 | 4:-88443327 | None:intergenic |
| GCCCATGGATCAACACCCAG+GGG | 0.698475 | 4:-88443312 | None:intergenic |
| ATGCTCTGTGAATCAATGGA+AGG | 0.701730 | 4:-88443336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAATAAAA+AGG | - | Chr4:88443563-88443582 | None:intergenic | 0.0% |
| !! | ATAAATAAATAAAAAGGAAA+AGG | - | Chr4:88443557-88443576 | None:intergenic | 10.0% |
| !! | TAATTTAATCATTTCAAATG+TGG | - | Chr4:88443835-88443854 | None:intergenic | 15.0% |
| !! | TTGTGTAATTTATCATTAAT+TGG | + | Chr4:88444203-88444222 | MsG0480023674.01.T01:three_prime_UTR | 15.0% |
| !!! | AAAAAAATTAATTTGCAGAA+TGG | + | Chr4:88443125-88443144 | MsG0480023674.01.T01:exon | 15.0% |
| !!! | CTCTAATTGAACTTTATTTT+CGG | - | Chr4:88443629-88443648 | None:intergenic | 20.0% |
| ! | AAAAAATCACAGCCAAAATT+TGG | - | Chr4:88444128-88444147 | None:intergenic | 25.0% |
| ! | AAGAAAAGAAAACTAACTTG+TGG | - | Chr4:88443487-88443506 | None:intergenic | 25.0% |
| ! | ATTACTTATGTTTAGTTGTG+TGG | + | Chr4:88443851-88443870 | MsG0480023674.01.T01:intron | 25.0% |
| ! | TTGATTTATTATGATTCAGC+TGG | + | Chr4:88443764-88443783 | MsG0480023674.01.T01:intron | 25.0% |
| ! | TTTAATTGTTCTGTTTGGTT+CGG | + | Chr4:88443787-88443806 | MsG0480023674.01.T01:intron | 25.0% |
| !!! | TTTTCTTTGTTTCCTTACAT+TGG | + | Chr4:88443378-88443397 | MsG0480023674.01.T01:CDS | 25.0% |
| AAATTACAATAACACTGGCA+TGG | - | Chr4:88444082-88444101 | None:intergenic | 30.0% | |
| AAGTACAAGAAACCAATGTA+AGG | - | Chr4:88443393-88443412 | None:intergenic | 30.0% | |
| AATCAGAAAAGCTGGAAATT+CGG | + | Chr4:88443991-88444010 | MsG0480023674.01.T01:CDS | 30.0% | |
| CAACGATTAAGTTATTCGAA+CGG | - | Chr4:88443731-88443750 | None:intergenic | 30.0% | |
| GGAACAAATTACAATAACAC+TGG | - | Chr4:88444087-88444106 | None:intergenic | 30.0% | |
| TTAAATGAAAATCACGTTGC+AGG | - | Chr4:88443227-88443246 | None:intergenic | 30.0% | |
| !! | ACTAACTTGTTCATTGTGTT+GGG | + | Chr4:88443956-88443975 | MsG0480023674.01.T01:CDS | 30.0% |
| !! | TGTAATTTGTTCCATTGACT+CGG | + | Chr4:88444094-88444113 | MsG0480023674.01.T01:three_prime_UTR | 30.0% |
| !! | TTGAAGGGTTGATAAGTTTA+GGG | - | Chr4:88443197-88443216 | None:intergenic | 30.0% |
| !!! | CAATGTTTTAAAAACCGAAC+TGG | + | Chr4:88443657-88443676 | MsG0480023674.01.T01:CDS | 30.0% |
| !!! | GGTTCGGTTTTTAGAATATT+GGG | + | Chr4:88443803-88443822 | MsG0480023674.01.T01:intron | 30.0% |
| !!! | TGGTTCGGTTTTTAGAATAT+TGG | + | Chr4:88443802-88443821 | MsG0480023674.01.T01:intron | 30.0% |
| AAATCACAGCCAAAATTTGG+AGG | - | Chr4:88444125-88444144 | None:intergenic | 35.0% | |
| CAAAAAGTAGAAACCGAAGA+GGG | - | Chr4:88443448-88443467 | None:intergenic | 35.0% | |
| CTTCTTTGTCTAATGTGGAT+TGG | + | Chr4:88443900-88443919 | MsG0480023674.01.T01:CDS | 35.0% | |
| GATTTACAGAGAGATACAAC+AGG | - | Chr4:88443174-88443193 | None:intergenic | 35.0% | |
| TGGAAATTCGGAGAAAAACA+CGG | + | Chr4:88444003-88444022 | MsG0480023674.01.T01:CDS | 35.0% | |
| TGGAACTTCTTTGTCTAATG+TGG | + | Chr4:88443895-88443914 | MsG0480023674.01.T01:CDS | 35.0% | |
| ! | GCTGGTTTAATTGTTCTGTT+TGG | + | Chr4:88443782-88443801 | MsG0480023674.01.T01:intron | 35.0% |
| !! | CACTAACTTGTTCATTGTGT+TGG | + | Chr4:88443955-88443974 | MsG0480023674.01.T01:CDS | 35.0% |
| !! | GTTGAAGGGTTGATAAGTTT+AGG | - | Chr4:88443198-88443217 | None:intergenic | 35.0% |
| !! | TACTTTTTGCTCGCTTTTGT+TGG | + | Chr4:88443459-88443478 | MsG0480023674.01.T01:CDS | 35.0% |
| !! | TCTAATGTGGATTGGTTACA+TGG | + | Chr4:88443908-88443927 | MsG0480023674.01.T01:CDS | 35.0% |
| !! | TGAAGGGTTGATAAGTTTAG+GGG | - | Chr4:88443196-88443215 | None:intergenic | 35.0% |
| !!! | GTTAGGAGAAGTTTTGGATT+TGG | - | Chr4:88443421-88443440 | None:intergenic | 35.0% |
| !!! | TTATTTTGAACAGTTCCAGC+TGG | + | Chr4:88443577-88443596 | MsG0480023674.01.T01:intron | 35.0% |
| AACCGAACTGGACATTAAAC+CGG | + | Chr4:88443669-88443688 | MsG0480023674.01.T01:CDS | 40.0% | |
| ACAAGTTAGTGAGAGTGAGA+AGG | - | Chr4:88443946-88443965 | None:intergenic | 40.0% | |
| ACAGTTCCAGCTGGAATTTA+TGG | + | Chr4:88443586-88443605 | MsG0480023674.01.T01:intron | 40.0% | |
| ATGAAAATCACGTTGCAGGA+AGG | - | Chr4:88443223-88443242 | None:intergenic | 40.0% | |
| ATGCTCTGTGAATCAATGGA+AGG | - | Chr4:88443339-88443358 | None:intergenic | 40.0% | |
| ATTGTGTTGGGTTTGAGAGA+GGG | + | Chr4:88443968-88443987 | MsG0480023674.01.T01:CDS | 40.0% | |
| CAAGTTAGTGAGAGTGAGAA+GGG | - | Chr4:88443945-88443964 | None:intergenic | 40.0% | |
| GCAAAAAGTAGAAACCGAAG+AGG | - | Chr4:88443449-88443468 | None:intergenic | 40.0% | |
| TTGACAGCTAAGGTGCATTA+TGG | + | Chr4:88443875-88443894 | MsG0480023674.01.T01:intron | 40.0% | |
| !! | AATGTGGATTGGTTACATGG+TGG | + | Chr4:88443911-88443930 | MsG0480023674.01.T01:CDS | 40.0% |
| !! | ATGTGGATTGGTTACATGGT+GGG | + | Chr4:88443912-88443931 | MsG0480023674.01.T01:CDS | 40.0% |
| AACTGGACATTAAACCGGCA+TGG | + | Chr4:88443674-88443693 | MsG0480023674.01.T01:CDS | 45.0% | |
| AAGAGAACAGTGATCGTGTG+TGG | + | Chr4:88443285-88443304 | MsG0480023674.01.T01:CDS | 45.0% | |
| AGAGAGGGAATCAGAAAAGC+TGG | + | Chr4:88443983-88444002 | MsG0480023674.01.T01:CDS | 45.0% | |
| AGCGATGCTCTGTGAATCAA+TGG | - | Chr4:88443343-88443362 | None:intergenic | 45.0% | |
| CATTGTGTTGGGTTTGAGAG+AGG | + | Chr4:88443967-88443986 | MsG0480023674.01.T01:CDS | 45.0% | |
| GAAAAACACGGAATCGAAGG+AGG | + | Chr4:88444015-88444034 | MsG0480023674.01.T01:CDS | 45.0% | |
| GACTCACCATAAATTCCAGC+TGG | - | Chr4:88443595-88443614 | None:intergenic | 45.0% | |
| GCAGCATACAGAATGACAGT+TGG | + | Chr4:88443704-88443723 | MsG0480023674.01.T01:intron | 45.0% | |
| GGAGAAAAACACGGAATCGA+AGG | + | Chr4:88444012-88444031 | MsG0480023674.01.T01:CDS | 45.0% | |
| ! | GGTGAGGTTAGGAGAAGTTT+TGG | - | Chr4:88443427-88443446 | None:intergenic | 45.0% |
| ! | TCGGATGTGCCTCCAAATTT+TGG | + | Chr4:88444113-88444132 | MsG0480023674.01.T01:three_prime_UTR | 45.0% |
| !! | TGCCGGTTTAATGTCCAGTT+CGG | - | Chr4:88443674-88443693 | None:intergenic | 45.0% |
| !! | TGTGGATTGGTTACATGGTG+GGG | + | Chr4:88443913-88443932 | MsG0480023674.01.T01:CDS | 45.0% |
| AAACCGAAGAGGGTGAGGTT+AGG | - | Chr4:88443438-88443457 | None:intergenic | 50.0% | |
| AGCAACTAGACCTTCATCCC+AGG | - | Chr4:88444049-88444068 | None:intergenic | 50.0% | |
| AGTAGAAACCGAAGAGGGTG+AGG | - | Chr4:88443443-88443462 | None:intergenic | 50.0% | |
| ATGCTGCTGTTGAACCATGC+CGG | - | Chr4:88443691-88443710 | None:intergenic | 50.0% | |
| CGAAGGAGGAGAAGAAACCT+GGG | + | Chr4:88444029-88444048 | MsG0480023674.01.T01:CDS | 50.0% | |
| GGAGAAGAAACCTGGGATGA+AGG | + | Chr4:88444036-88444055 | MsG0480023674.01.T01:CDS | 50.0% | |
| GTTGCAGGAAGGTCGTTGAA+GGG | - | Chr4:88443212-88443231 | None:intergenic | 50.0% | |
| GTTGTGTGGCTTGACAGCTA+AGG | + | Chr4:88443865-88443884 | MsG0480023674.01.T01:intron | 50.0% | |
| TCGAAGGAGGAGAAGAAACC+TGG | + | Chr4:88444028-88444047 | MsG0480023674.01.T01:CDS | 50.0% | |
| TCTCCTAACCTCACCCTCTT+CGG | + | Chr4:88443432-88443451 | MsG0480023674.01.T01:CDS | 50.0% | |
| !! | GAATCAATGGAAGGTGCCCA+TGG | - | Chr4:88443330-88443349 | None:intergenic | 50.0% |
| CGTTGCAGGAAGGTCGTTGA+AGG | - | Chr4:88443213-88443232 | None:intergenic | 55.0% | |
| TGCCCATGGATCAACACCCA+GGG | - | Chr4:88443316-88443335 | None:intergenic | 55.0% | |
| ! | ATCGTGTGTGGATTGCCCCT+GGG | + | Chr4:88443297-88443316 | MsG0480023674.01.T01:CDS | 55.0% |
| ! | TGGAGGCACATCCGAGTCAA+TGG | - | Chr4:88444108-88444127 | None:intergenic | 55.0% |
| GCCCATGGATCAACACCCAG+GGG | - | Chr4:88443315-88443334 | None:intergenic | 60.0% | |
| GTGCCCATGGATCAACACCC+AGG | - | Chr4:88443317-88443336 | None:intergenic | 60.0% | |
| ! | GATCGTGTGTGGATTGCCCC+TGG | + | Chr4:88443296-88443315 | MsG0480023674.01.T01:CDS | 60.0% |
| !! | GCCCCTGGGTGTTGATCCAT+GGG | + | Chr4:88443311-88443330 | MsG0480023674.01.T01:CDS | 60.0% |
| !! | TGCCCCTGGGTGTTGATCCA+TGG | + | Chr4:88443310-88443329 | MsG0480023674.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 88443118 | 88444249 | 88443118 | ID=MsG0480023674.01;Name=MsG0480023674.01 |
| Chr4 | mRNA | 88443118 | 88444249 | 88443118 | ID=MsG0480023674.01.T01;Parent=MsG0480023674.01;Name=MsG0480023674.01.T01;_AED=0.50;_eAED=0.56;_QI=26|0.5|0.66|1|1|1|3|186|219 |
| Chr4 | exon | 88443118 | 88443489 | 88443118 | ID=MsG0480023674.01.T01:exon:12359;Parent=MsG0480023674.01.T01 |
| Chr4 | exon | 88443590 | 88443721 | 88443590 | ID=MsG0480023674.01.T01:exon:12360;Parent=MsG0480023674.01.T01 |
| Chr4 | exon | 88443882 | 88444249 | 88443882 | ID=MsG0480023674.01.T01:exon:12361;Parent=MsG0480023674.01.T01 |
| Chr4 | five_prime_UTR | 88443118 | 88443143 | 88443118 | ID=MsG0480023674.01.T01:five_prime_utr;Parent=MsG0480023674.01.T01 |
| Chr4 | CDS | 88443144 | 88443489 | 88443144 | ID=MsG0480023674.01.T01:cds;Parent=MsG0480023674.01.T01 |
| Chr4 | CDS | 88443590 | 88443721 | 88443590 | ID=MsG0480023674.01.T01:cds;Parent=MsG0480023674.01.T01 |
| Chr4 | CDS | 88443882 | 88444063 | 88443882 | ID=MsG0480023674.01.T01:cds;Parent=MsG0480023674.01.T01 |
| Chr4 | three_prime_UTR | 88444064 | 88444249 | 88444064 | ID=MsG0480023674.01.T01:three_prime_utr;Parent=MsG0480023674.01.T01 |
| Gene Sequence |
| Protein sequence |
