AlfalfaGEDB | MsG0480020674.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020674.01

KEGG: K23288
GO: -
PFAM: PF10474 PF10475

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020674.01.T01	XP_013455908.1	81.401	1199	60	10	1	1114	1	1121	0	1725

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020674.01.T01	Q96JG6	23.404	1034	593	29	122	1094	43	938	1.83E-45	181

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020674.01.T01	A0A072UJM4	81.401	1199	60	10	1	1114	1	1121	0.0	1725

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048952.01	MsG0480020674.01	0.842866	1.989924e-58	3.057567e-55
MsG0080049014.01	MsG0480020674.01	0.820478	6.714648e-53	5.318783e-50
MsG0080049058.01	MsG0480020674.01	0.830280	3.209354e-55	3.365843e-52
MsG0180001471.01	MsG0480020674.01	0.811597	6.466924e-51	4.019625e-48
MsG0180002071.01	MsG0480020674.01	0.809410	1.918378e-50	1.125551e-47
MsG0180003948.01	MsG0480020674.01	0.826070	3.318479e-54	3.079640e-51
MsG0180004005.01	MsG0480020674.01	0.831402	1.704107e-55	1.847193e-52
MsG0180004789.01	MsG0480020674.01	0.819021	1.445177e-52	1.099428e-49
MsG0180005050.01	MsG0480020674.01	0.803952	2.727181e-49	1.388760e-46
MsG0180005614.01	MsG0480020674.01	0.829631	4.621124e-55	4.756275e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020674.01.T01	MTR_4g056510	81.401	1199	60	10	1	1114	1	1121	0.0	1725

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020674.01.T01	AT2G27900	57.378	1213	325	27	1	1114	1	1120	0.0	1164
MsG0480020674.01.T01	AT2G27900	57.378	1213	325	27	1	1114	1	1120	0.0	1164

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Find 272 sgRNAs with CRISPR-Local

Find 1249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGACTTGCTCATGG+AGG	0.685375	4:+45875446	MsG0480020674.01.T01:CDS
AAAAGATTGAGTGAGTAAGT+AGG	0.514105	4:+45876760	MsG0480020674.01.T01:exon
AAAATGTCAACCTCAAAAGA+AGG	0.546370	4:+45870968	MsG0480020674.01.T01:CDS
AAACCAGGCTTACTACCTTC+CGG	0.463140	4:+45876496	MsG0480020674.01.T01:intron
AAAGAGGACGCAAGAATCTG+TGG	0.628182	4:+45869828	MsG0480020674.01.T01:CDS
AAATGGGAAGTAAAAGAACT+TGG	0.483454	4:+45874213	MsG0480020674.01.T01:CDS
AACAATTCTATGTCCAGTTC+CGG	0.428800	4:+45869620	MsG0480020674.01.T01:CDS
AACCACTTCAATTCCACAGA+AGG	0.544135	4:-45869969	None:intergenic
AACCTTGTTGCCTCTATGAA+AGG	0.511836	4:+45876705	MsG0480020674.01.T01:CDS
AACCTTTCATAGAGGCAACA+AGG	0.603015	4:-45876707	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATATGGGAAAGAGGAA+AGG	-	Chr4:45872602-45872621	None:intergenic	30.0%
AAAAGATTGAGTGAGTAAGT+AGG	+	Chr4:45876760-45876779	MsG0480020674.01.T01:exon	30.0%
AAAATATGGGAAAGAGGAAA+GGG	-	Chr4:45872601-45872620	None:intergenic	30.0%
AAAATGTCAACCTCAAAAGA+AGG	+	Chr4:45870968-45870987	MsG0480020674.01.T01:CDS	30.0%
AAACTAGAGCTAAGATGTTA+GGG	-	Chr4:45869267-45869286	None:intergenic	30.0%
AAAGACCAGATAGAAAAGTA+AGG	+	Chr4:45867194-45867213	MsG0480020674.01.T01:intron	30.0%
AAATGGGAAGTAAAAGAACT+TGG	+	Chr4:45874213-45874232	MsG0480020674.01.T01:CDS	30.0%
AACATAAGTACAATACATGC+AGG	-	Chr4:45865428-45865447	None:intergenic	30.0%
AACTATGTCAATTCATCGAT+AGG	-	Chr4:45872123-45872142	None:intergenic	30.0%
AAGAAACAAAAGAACAAGTG+TGG	-	Chr4:45876030-45876049	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	45858686	45877022	45858686	ID=MsG0480020674.01;Name=MsG0480020674.01
Chr4	mRNA	45858686	45877022	45858686	ID=MsG0480020674.01.T01;Parent=MsG0480020674.01;Name=MsG0480020674.01.T01;_AED=0.42;_eAED=0.45;_QI=263\|0.63\|0.78\|1\|1\|1\|23\|249\|1114
Chr4	exon	45858686	45859194	45858686	ID=MsG0480020674.01.T01:exon:6922;Parent=MsG0480020674.01.T01
Chr4	exon	45861471	45861638	45861471	ID=MsG0480020674.01.T01:exon:6923;Parent=MsG0480020674.01.T01
Chr4	exon	45862497	45862571	45862497	ID=MsG0480020674.01.T01:exon:6924;Parent=MsG0480020674.01.T01
Chr4	exon	45864011	45864089	45864011	ID=MsG0480020674.01.T01:exon:6925;Parent=MsG0480020674.01.T01
Chr4	exon	45864529	45864602	45864529	ID=MsG0480020674.01.T01:exon:6926;Parent=MsG0480020674.01.T01
Chr4	exon	45864681	45864770	45864681	ID=MsG0480020674.01.T01:exon:6927;Parent=MsG0480020674.01.T01
Chr4	exon	45865268	45865354	45865268	ID=MsG0480020674.01.T01:exon:6928;Parent=MsG0480020674.01.T01
Chr4	exon	45865530	45865613	45865530	ID=MsG0480020674.01.T01:exon:6929;Parent=MsG0480020674.01.T01
Chr4	exon	45866017	45866136	45866017	ID=MsG0480020674.01.T01:exon:6930;Parent=MsG0480020674.01.T01
Chr4	exon	45869527	45870060	45869527	ID=MsG0480020674.01.T01:exon:6931;Parent=MsG0480020674.01.T01
Chr4	exon	45870493	45870570	45870493	ID=MsG0480020674.01.T01:exon:6932;Parent=MsG0480020674.01.T01
Chr4	exon	45870731	45871278	45870731	ID=MsG0480020674.01.T01:exon:6933;Parent=MsG0480020674.01.T01
Chr4	exon	45871384	45871452	45871384	ID=MsG0480020674.01.T01:exon:6934;Parent=MsG0480020674.01.T01
Chr4	exon	45871563	45871678	45871563	ID=MsG0480020674.01.T01:exon:6935;Parent=MsG0480020674.01.T01
Chr4	exon	45871766	45871938	45871766	ID=MsG0480020674.01.T01:exon:6936;Parent=MsG0480020674.01.T01
Chr4	exon	45872740	45872865	45872740	ID=MsG0480020674.01.T01:exon:6937;Parent=MsG0480020674.01.T01
Chr4	exon	45873437	45873507	45873437	ID=MsG0480020674.01.T01:exon:6938;Parent=MsG0480020674.01.T01
Chr4	exon	45874188	45874250	45874188	ID=MsG0480020674.01.T01:exon:6939;Parent=MsG0480020674.01.T01
Chr4	exon	45875409	45875481	45875409	ID=MsG0480020674.01.T01:exon:6940;Parent=MsG0480020674.01.T01
Chr4	exon	45875693	45875812	45875693	ID=MsG0480020674.01.T01:exon:6941;Parent=MsG0480020674.01.T01
Chr4	exon	45876210	45876407	45876210	ID=MsG0480020674.01.T01:exon:6942;Parent=MsG0480020674.01.T01
Chr4	exon	45876503	45876553	45876503	ID=MsG0480020674.01.T01:exon:6943;Parent=MsG0480020674.01.T01
Chr4	exon	45876672	45877022	45876672	ID=MsG0480020674.01.T01:exon:6944;Parent=MsG0480020674.01.T01
Chr4	five_prime_UTR	45858686	45858948	45858686	ID=MsG0480020674.01.T01:five_prime_utr;Parent=MsG0480020674.01.T01
Chr4	CDS	45858949	45859194	45858949	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45861471	45861638	45861471	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45862497	45862571	45862497	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45864011	45864089	45864011	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45864529	45864602	45864529	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45864681	45864770	45864681	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45865268	45865354	45865268	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45865530	45865613	45865530	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45866017	45866136	45866017	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45869527	45870060	45869527	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45870493	45870570	45870493	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45870731	45871278	45870731	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45871384	45871452	45871384	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45871563	45871678	45871563	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45871766	45871938	45871766	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45872740	45872865	45872740	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45873437	45873507	45873437	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45874188	45874250	45874188	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45875409	45875481	45875409	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45875693	45875812	45875693	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45876210	45876407	45876210	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45876503	45876553	45876503	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	CDS	45876672	45876773	45876672	ID=MsG0480020674.01.T01:cds;Parent=MsG0480020674.01.T01
Chr4	three_prime_UTR	45876774	45877022	45876774	ID=MsG0480020674.01.T01:three_prime_utr;Parent=MsG0480020674.01.T01

Gene Sequence

>MsG0480020674.01.T01

ATGCAGCCGAATTTATTTCCATTCGGAAGCGCGTTGAGTAATAATCCGTTTATATTGAACGAAGGAGGAGGAGGAGAAGGAGGAGAAGGTGGAATCGATAGTTCTAGGGTCTTGGTTTTGCTTCCTTTCTTCTTGCTCTCTCAAGGAGGAGCAATGGATTTATCTAAAGTTGGTGAGAAAATCTTCAGTTCTGTTAAGTCTGCTAGATCGCTTGGTTTACTTCCTTCTCTTCCTGATCGCCCCGAGGTTCCAGCTCGAGCTGTTGCTGCAGCTGCTGTAGCTCGTGCTCTTGCAGGGTTACCTCCTCATCAGAGGTATAGTCTTTCATCAAGTTCAGAAGAGCTGAGTTCAATATATGGAAGCAGACCTAATGATCCTGCAGTGGAGGAACTGGAGGATGAATTCTATGAAGAGGATTTTGATCCAATTAGGCATGTTTTGGAGCACGTTCCTTCTGAAGAAAATGAGCTAGCATATTTTGAAAAGCAGGCTACCCTTAGAATAACACAACTGGACAAAGTAGCAGAGCATTTGTCTCGCCATGTTATGGAGCATCATGAAGTAATGGTGAAGGGGATGAATTTGGTCAGGGAGTTGGAGAAAGACTTGAGAATTGCAAATGTCATCTGTATGGTGAGCATCAATGGAAGAAGGCACCTGACATCTTCTATGAATGAGGTTTCAAGGGATTTGATTGTGAATTCTTATTCAAAAAAGAAGCAAGCACTAGTGGCATTTCAAGTCCTATCGGAGTATTTGCAACTCTTAGAGAGTTTCCCAGAGCTTTCTGCAATGCAAGAGATGAGCCGTGGTGTGGAGGTTTGGCTGGGAAGAACTTTGCAGAAATTGGATGCTCTTTTATTGGATGTATGCCAGGAATTTAAGGAATATGACTATCTGACAGTAATTGATGCGTATGCATTGATAGGGGATACCAGTGGTCTTGCTGAAAAGATACAAAGTTTCTTCATGCAAGAAGTCATATCAGAGACACACTCCGTGCTAAAGACTATTGTGCATGAGGATTCAGCACCACAGACATCTGATAAGTGCAATGAAGACAGTTCTTGTAGTTTAGGCGAGGCTCGGGAAGTTGATTCAGTTGCAACAGCCTGCAACAATTCTATGTCCAGTTCCGGGGATGTGATACATGACTCATCTTCAACAATCAGCGCACCGACCGAAACTACCGGTTCACCACTATGCAGTGATTTTCATGATCCAGTGAATGAGGCTAGAGAGGAGGAAAGTTCACCATCAAGCATCGATTCCCCATGGTACCATCTTCGGAAAGAAGCTACAACATTTGTTTCTCAGACCCTTCAAAGAGGACGCAAGAATCTGTGGCATCTTACTGCAAGTCGTGTCTCAGTGTTGCTTTCTTCTGCTGCAGCTTGTTCTGCTAGCATTCATCTATTCTTGAAAAATTATGAAGATCTGAGTGTATTCATTTTGACTGGTGAAGCCTTCTGTGGAATTGAAGTGGTTGAATTCAGGCAGAAATTGAAGGTTGTTTGTGAAAACTATTTCATAGCATTTCATCGACAAAACGTGCATGTCCATAATCCCGGAAGCTTCTGGGCTATTACTGTGTGGAATACTAAGAATTTTGATTTGATGAAACTATTACATAATGCACTAAAAATGGTTTTGGAGAAGGAAACTTGGTTAAAATTACCTCCAGAGACTGTTCAAATTATCAGTTTTGCTGGACTTATTGGTGATGGAGCACCATTGATTTCTTTATCTGTCAGTAAATCAATGAATATCAATGCAATCCATTCCAATAATAAATCAGTGAACATGGTTCACACTGGTGCGAGGAAGAGTGGGTTCTCTCATTGGATTAAAAATGGAAATCCTTTTCTGCAAAAAATGTCAACCTCAAAAGAAGGCCATGGTATTCCCCAACCTAACGGGTCAAGTTATGGTGAATATGATGGAGGCTCAGTCAACAACTATCATGATGATAGAGTCTCCCCTAGAAAGAATGACTCCAGTCAATTGAATGGTGCCAATTCTGTTTTAGAAGATGAAAATGAAGATCTTCTTGCTGACTTTATTGATGAAGACAGTCAACTTCCAAGCCGAAGTTCTAAACCCCATCATTCAAGATCTCACTCTTCACATGGTAATGATGAAGAGAGTACAGCACAAACTGGATCGTCACTATGTCTTTTAAGGTCTATGGACAAATATGCAAGGCTTATGCAGAAATTAGAAGTAGTAAATGTTGAGTTCTTTAAGGTAGGGGAATATGCCAGTTGTTTGAAATTTTTTTCTATTTTATATATGAAACATTTGGTCAGCAGAATACTAATTCAAGTGGAAAAAGCTCAGTTAACTCTCTTAATTGTAAGTGGCATAGATCGCTTGAGGACAGCCTTATCTAGAATAAACCAAGATTGCGAGGAGTGGCTTAAGCCGCCCCACTCATCTTCACCAACATCAAGTTCATCATTTGTACATGCAGAGTTGACACCTACAAATCCTCCAAATATGAATTTTGGTCACCCCTCGGGGACTGCTTTTAGTCTTAAGGAAAGATGTGTGGCTGTTGACACAATATCTCTCGTTGCTCGAATACTAAATAGATCCAAAGCTCACCTCCAATCAATGCTCTTGCAAAGTAATTCAACTGTACTTGAGGATTTCTATGTTCATCTGGTGGATGCTGTACCAGATCTTACAGAGCATGTCCATCACACAACAGTAAGACTACTGCTGCACATTAATGGGTATGTTGATCGTGTTGCCAATTGTAAATGGGAAGTAAAAGAACTTGGAATGGAGCATAATGGGTATGTTGATTTGCTGCTGGGGGAGTTTAAGCACTTTAAAACACGACTTGCTCATGGAGGAATTCGTAAGGAGACTCAAGACACATTGTTGGACTATGGGCTTGACATTGTTGCGGAAACTCTTGTGGAAGGACTTTCACGGGTGAAGAGATGTAACGATGAAGGACGGGCTCTAATGTCATTGGATCTGCAGGTTTTGATAAATGGACTAAAGCATTTTGCTTCGTTGAATGTCAAGTCCAAGCTACAAATGGTTGAAGCTTTCATTAAGGTAAGGAACTATGGACATGGGAACACATTCCTACTACACTGTTTGCAAATACGGATGAGTACTGGTTACATAGTAGAAATAGTTTGGGTGTTGATGCCTGACCAGTTCTATAAATTGGGGGCTTACTACCTTCCGGAGACAGAATATGTGCACTGGGCACGTGGGCACCCGGAATACAGTAAAAGCCAGGTTGTAGGATTGGTCAACCTTGTTGCCTCTATGAAAGGTTGGAAGAGGAAAACCAGGTTGGAAGTACTGGAAAAGATTGAGTGA

Protein sequence

>MsG0480020674.01.T01

MQPNLFPFGSALSNNPFILNEGGGGEGGEGGIDSSRVLVLLPFFLLSQGGAMDLSKVGEKIFSSVKSARSLGLLPSLPDRPEVPARAVAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPNDPAVEELEDEFYEEDFDPIRHVLEHVPSEENELAYFEKQATLRITQLDKVAEHLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMVSINGRRHLTSSMNEVSRDLIVNSYSKKKQALVAFQVLSEYLQLLESFPELSAMQEMSRGVEVWLGRTLQKLDALLLDVCQEFKEYDYLTVIDAYALIGDTSGLAEKIQSFFMQEVISETHSVLKTIVHEDSAPQTSDKCNEDSSCSLGEAREVDSVATACNNSMSSSGDVIHDSSSTISAPTETTGSPLCSDFHDPVNEAREEESSPSSIDSPWYHLRKEATTFVSQTLQRGRKNLWHLTASRVSVLLSSAAACSASIHLFLKNYEDLSVFILTGEAFCGIEVVEFRQKLKVVCENYFIAFHRQNVHVHNPGSFWAITVWNTKNFDLMKLLHNALKMVLEKETWLKLPPETVQIISFAGLIGDGAPLISLSVSKSMNINAIHSNNKSVNMVHTGARKSGFSHWIKNGNPFLQKMSTSKEGHGIPQPNGSSYGEYDGGSVNNYHDDRVSPRKNDSSQLNGANSVLEDENEDLLADFIDEDSQLPSRSSKPHHSRSHSSHGNDEESTAQTGSSLCLLRSMDKYARLMQKLEVVNVEFFKVGEYASCLKFFSILYMKHLVSRILIQVEKAQLTLLIVSGIDRLRTALSRINQDCEEWLKPPHSSSPTSSSSFVHAELTPTNPPNMNFGHPSGTAFSLKERCVAVDTISLVARILNRSKAHLQSMLLQSNSTVLEDFYVHLVDAVPDLTEHVHHTTVRLLLHINGYVDRVANCKWEVKELGMEHNGYVDLLLGEFKHFKTRLAHGGIRKETQDTLLDYGLDIVAETLVEGLSRVKRCNDEGRALMSLDLQVLINGLKHFASLNVKSKLQMVEAFIKVRNYGHGNTFLLHCLQIRMSTGYIVEIVWVLMPDQFYKLGAYYLPETEYVHWARGHPEYSKSQVVGLVNLVASMKGWKRKTRLEVLEKIE*