AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016249.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016249.01.T01 MTR_3g086360 82.919 322 17 3 1 286 24 343 0.0 530
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016249.01.T01 AT3G26115 49.231 325 116 6 1 286 39 353 4.55e-103 306
MsG0380016249.01.T01 AT3G26115 49.231 325 116 6 1 286 39 353 1.19e-102 306
MsG0380016249.01.T01 AT3G26115 52.364 275 84 4 50 286 5 270 1.88e-94 283
MsG0380016249.01.T01 AT3G26115 52.364 275 84 4 50 286 5 270 1.88e-94 283
MsG0380016249.01.T01 AT3G26115 57.965 226 84 3 63 286 12 228 4.59e-89 267

Find 63 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATAACTTGATGAATTT+TGG 0.104931 3:-80972562 None:intergenic
TTGAACACAAATCCAGATTT+TGG 0.179164 3:+80972618 MsG0380016249.01.T01:CDS
ACTCTAACATCTTACTTTCT+TGG 0.184277 3:-80975371 None:intergenic
GCTTCCATTTGCATAAAATT+TGG 0.188543 3:-80973875 None:intergenic
TTATAGCCAGTCAAGATTTC+AGG 0.282652 3:-80973683 None:intergenic
CTGTTGGCGTAAACATTTCT+TGG 0.300656 3:-80973743 None:intergenic
TTGTTGCACCCGCTGATTAA+TGG 0.301555 3:+80972699 MsG0380016249.01.T01:CDS
TAGGACAGAACCATTGTTTC+CGG 0.305021 3:-80973801 None:intergenic
TTCTTTGTATAGGTATTATT+CGG 0.317658 3:+80974923 MsG0380016249.01.T01:intron
CAAGAAATGTTTACGCCAAC+AGG 0.321119 3:+80973744 MsG0380016249.01.T01:CDS
GGACTTGCAGCGCTTTGCTT+AGG 0.327745 3:+80975042 MsG0380016249.01.T01:CDS
AACTTGATGTCTACAATATA+CGG 0.331391 3:+80973704 MsG0380016249.01.T01:CDS
ACATTGCCATTACCAAAATC+TGG 0.350689 3:-80972630 None:intergenic
GTGAAGTTTGTTGTGGATGC+TGG 0.420790 3:+80974994 MsG0380016249.01.T01:CDS
GACTTGCAGCGCTTTGCTTA+GGG 0.429180 3:+80975043 MsG0380016249.01.T01:CDS
AATTGATGGGTACCGAAAAC+AGG 0.432157 3:+80975244 MsG0380016249.01.T01:CDS
GGTGATTCTGTTGCTCTACT+AGG 0.439298 3:+80973953 MsG0380016249.01.T01:CDS
TGGTAATGGCAATGTTGAAA+TGG 0.439359 3:+80972638 MsG0380016249.01.T01:CDS
TTTGTTGTGGATGCTGGTAC+TGG 0.444120 3:+80975000 MsG0380016249.01.T01:CDS
CTTTAGCATTTCTTCCCTGT+TGG 0.450134 3:-80973759 None:intergenic
CACGATGTAAACAAAGATGA+TGG 0.462326 3:+80975320 MsG0380016249.01.T01:CDS
TTGTCGCAGAATCATTTACT+TGG 0.469233 3:+80974958 MsG0380016249.01.T01:CDS
TGCTTCTGTGCAGACTCCCA+TGG 0.469456 3:+80975192 MsG0380016249.01.T01:intron
TATTATTCATAAACATGGAC+TGG 0.472415 3:+80972578 MsG0380016249.01.T01:CDS
AGATGATGGGATTGTGCATT+GGG 0.478318 3:+80975334 MsG0380016249.01.T01:CDS
CTTTATTACCATTAATCAGC+GGG 0.489787 3:-80972707 None:intergenic
ATCATTTACTTGGGAAACAA+AGG 0.490526 3:+80974968 MsG0380016249.01.T01:CDS
ATGCTGGCTGATAAAATTGA+TGG 0.508131 3:+80975230 MsG0380016249.01.T01:CDS
GAAACAATGGTTCTGTCCTA+TGG 0.515150 3:+80973804 MsG0380016249.01.T01:CDS
TAACATCTTACTTTCTTGGA+TGG 0.520358 3:-80975367 None:intergenic
CAAGTTATTATTCATAAACA+TGG 0.523823 3:+80972573 MsG0380016249.01.T01:CDS
GGCACAACAGCAGTTGGTAT+AGG 0.525800 3:+80975021 MsG0380016249.01.T01:CDS
TTAATTGTCAATGAAGGGGC+TGG 0.526047 3:+80973932 MsG0380016249.01.T01:CDS
AGCTATGCCGAGTCAGTGGC+CGG 0.538289 3:+80973782 MsG0380016249.01.T01:CDS
TCATTTACTTGGGAAACAAA+GGG 0.538446 3:+80974969 MsG0380016249.01.T01:CDS
GAATGATATCACTGAACCAT+AGG 0.540099 3:-80973820 None:intergenic
ATTGTTTCCGGCCACTGACT+CGG 0.547238 3:-80973789 None:intergenic
GCTTCTGTGCAGACTCCCAT+GGG 0.548103 3:+80975193 MsG0380016249.01.T01:intron
TGTCGCAGAATCATTTACTT+GGG 0.550672 3:+80974959 MsG0380016249.01.T01:CDS
GAGCAGCCTGAAATCTTGAC+TGG 0.552886 3:+80973677 MsG0380016249.01.T01:CDS
ATGACTGCATATACCTCCCA+TGG 0.564868 3:-80975209 None:intergenic
AAGATGATGGGATTGTGCAT+TGG 0.569877 3:+80975333 MsG0380016249.01.T01:CDS
GGAGGTATATGCAGTCATGC+TGG 0.575564 3:+80975214 MsG0380016249.01.T01:CDS
GAGTCAGTGGCCGGAAACAA+TGG 0.576023 3:+80973791 MsG0380016249.01.T01:CDS
ATTATTCATAAACATGGACT+GGG 0.578163 3:+80972579 MsG0380016249.01.T01:CDS
ACGATGTAAACAAAGATGAT+GGG 0.599833 3:+80975321 MsG0380016249.01.T01:CDS
CATCATCTTTGTTTACATCG+TGG 0.609610 3:-80975319 None:intergenic
AAGGGCTGTGAAGTTTGTTG+TGG 0.613607 3:+80974987 MsG0380016249.01.T01:CDS
AAAGAGCTATGCCGAGTCAG+TGG 0.614125 3:+80973778 MsG0380016249.01.T01:CDS
GCTGTTCTGTGTGCTGAGAG+AGG 0.614335 3:+80973626 MsG0380016249.01.T01:intron
GCTTTATTACCATTAATCAG+CGG 0.623719 3:-80972708 None:intergenic
TGCTGGCTGATAAAATTGAT+GGG 0.627219 3:+80975231 MsG0380016249.01.T01:CDS
AATGGAAGCTAGTCAAAGTG+AGG 0.628363 3:+80973889 MsG0380016249.01.T01:CDS
GGTACTGGCACAACAGCAGT+TGG 0.628373 3:+80975015 MsG0380016249.01.T01:CDS
AAGAAATGTTTACGCCAACA+GGG 0.631071 3:+80973745 MsG0380016249.01.T01:CDS
TCTGTGCAGACTCCCATGGG+AGG 0.637900 3:+80975196 MsG0380016249.01.T01:intron
TGATGGGATTGTGCATTGGG+TGG 0.645841 3:+80975337 MsG0380016249.01.T01:CDS
ATGTTGAAATGGATAAACAA+AGG 0.652119 3:+80972649 MsG0380016249.01.T01:CDS
AAAAGTTACTCAACAGAACG+TGG 0.653642 3:+80972520 MsG0380016249.01.T01:CDS
ATTCATAAACATGGACTGGG+AGG 0.659040 3:+80972582 MsG0380016249.01.T01:CDS
TGACTGCATATACCTCCCAT+GGG 0.661084 3:-80975208 None:intergenic
ATGGAAGCTAGTCAAAGTGA+GGG 0.664903 3:+80973890 MsG0380016249.01.T01:CDS
ATGTCACATTTGCTTCTACG+AGG 0.668149 3:+80973653 MsG0380016249.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATAATATCTTTAATATA+TGG - Chr3:80974193-80974212 None:intergenic 10.0%
!! TCTTATTATATACTATTAAT+GGG + Chr3:80973017-80973036 MsG0380016249.01.T01:intron 10.0%
!! TTCTTATTATATACTATTAA+TGG + Chr3:80973016-80973035 MsG0380016249.01.T01:intron 10.0%
!!! GAACAATAAATTAATATTTT+TGG + Chr3:80974225-80974244 MsG0380016249.01.T01:intron 10.0%
!!! TACTATTCTTTATATTTTAT+TGG + Chr3:80972837-80972856 MsG0380016249.01.T01:intron 10.0%
!!! TTTTATTTAATTCTACAAAT+TGG + Chr3:80974841-80974860 MsG0380016249.01.T01:intron 10.0%
!! GAAAATTTAATATATAAGTG+AGG + Chr3:80974129-80974148 MsG0380016249.01.T01:intron 15.0%
!! GATTATCATTTATTAAGAAT+AGG + Chr3:80974733-80974752 MsG0380016249.01.T01:intron 15.0%
!! TAATAAGATTTAGTTAAGAA+CGG - Chr3:80974378-80974397 None:intergenic 15.0%
!! TATTAAAGATATTATTGAAC+AGG + Chr3:80974195-80974214 MsG0380016249.01.T01:intron 15.0%
!! TTCTTAATAAATGATAATCA+AGG - Chr3:80974732-80974751 None:intergenic 15.0%
!! TTGATATATATTGTTGTAAT+TGG + Chr3:80974602-80974621 MsG0380016249.01.T01:intron 15.0%
!!! AAAATGTTATTTCTTTGTAT+AGG + Chr3:80974913-80974932 MsG0380016249.01.T01:intron 15.0%
!!! AATAATAACTTGATGAATTT+TGG - Chr3:80972565-80972584 None:intergenic 15.0%
!!! AGTAAATTTTGCAATTAATA+AGG - Chr3:80973128-80973147 None:intergenic 15.0%
!!! TAATACTACTTTTCATATAA+TGG + Chr3:80973587-80973606 MsG0380016249.01.T01:intron 15.0%
!! AAAAACTGAGTTAACTTTAA+CGG + Chr3:80973082-80973101 MsG0380016249.01.T01:intron 20.0%
!! AAATACAGATAACTTTATCT+AGG - Chr3:80974105-80974124 None:intergenic 20.0%
!! AATCCTAAAATCAATTTCAT+TGG - Chr3:80973400-80973419 None:intergenic 20.0%
!! ATAAATGATAATCAAGGAAA+AGG - Chr3:80974726-80974745 None:intergenic 20.0%
!! ATATATTGTTGTAATTGGAA+TGG + Chr3:80974607-80974626 MsG0380016249.01.T01:intron 20.0%
!! ATCCTAAAATCAATTTCATT+GGG - Chr3:80973399-80973418 None:intergenic 20.0%
!! ATTATAAATATCTCAGATTG+TGG + Chr3:80973255-80973274 MsG0380016249.01.T01:intron 20.0%
!! CAAGTTATTATTCATAAACA+TGG + Chr3:80972573-80972592 MsG0380016249.01.T01:CDS 20.0%
!! GTGTGTAATTAATAATTATG+AGG + Chr3:80974688-80974707 MsG0380016249.01.T01:intron 20.0%
!! TATGATAAGGAACAAATTAA+AGG - Chr3:80973355-80973374 None:intergenic 20.0%
!! TCATTTATTAAGAATAGGAT+AGG + Chr3:80974738-80974757 MsG0380016249.01.T01:intron 20.0%
!! TGAAATTCAGTTAACTTTAA+TGG + Chr3:80974867-80974886 MsG0380016249.01.T01:intron 20.0%
!! TTATAAATATCTCAGATTGT+GGG + Chr3:80973256-80973275 MsG0380016249.01.T01:intron 20.0%
!! TTATTAATTACACACTATCA+TGG - Chr3:80974683-80974702 None:intergenic 20.0%
!! TTCTTTGTATAGGTATTATT+CGG + Chr3:80974923-80974942 MsG0380016249.01.T01:intron 20.0%
!!! AAGATTTTAATTGTCAATGA+AGG + Chr3:80973926-80973945 MsG0380016249.01.T01:CDS 20.0%
!!! AGATTTTAATTGTCAATGAA+GGG + Chr3:80973927-80973946 MsG0380016249.01.T01:CDS 20.0%
!!! GAATTAAAGGCTTAATTTTT+GGG - Chr3:80972920-80972939 None:intergenic 20.0%
!!! GTTTTTAACCATATTAGAAA+AGG + Chr3:80975140-80975159 MsG0380016249.01.T01:intron 20.0%
!!! TCATATATCCTTTTCTAATA+TGG - Chr3:80975151-80975170 None:intergenic 20.0%
!!! TGAATTAAAGGCTTAATTTT+TGG - Chr3:80972921-80972940 None:intergenic 20.0%
! AAAACAACAAAGCATATCTT+TGG + Chr3:80973997-80974016 MsG0380016249.01.T01:intron 25.0%
! AAAACTAAACATTGTTGTGA+AGG - Chr3:80972798-80972817 None:intergenic 25.0%
! AAAACTGAGTTAACTTTAAC+GGG + Chr3:80973083-80973102 MsG0380016249.01.T01:intron 25.0%
! AAACAACAAAGCATATCTTT+GGG + Chr3:80973998-80974017 MsG0380016249.01.T01:intron 25.0%
! AACTTGATGTCTACAATATA+CGG + Chr3:80973704-80973723 MsG0380016249.01.T01:CDS 25.0%
! AATAAAGCAAGAAAATTGGA+TGG + Chr3:80972723-80972742 MsG0380016249.01.T01:intron 25.0%
! ACTTTATAATCATGAAGCAA+GGG - Chr3:80972756-80972775 None:intergenic 25.0%
! AGGTAAAAATCTAGATATGA+GGG + Chr3:80974038-80974057 MsG0380016249.01.T01:intron 25.0%
! ATGTTGAAATGGATAAACAA+AGG + Chr3:80972649-80972668 MsG0380016249.01.T01:CDS 25.0%
! ATTATTCATAAACATGGACT+GGG + Chr3:80972579-80972598 MsG0380016249.01.T01:CDS 25.0%
! TAACTGATTGATAAGTTTCT+AGG - Chr3:80974802-80974821 None:intergenic 25.0%
! TAGGTAAAAATCTAGATATG+AGG + Chr3:80974037-80974056 MsG0380016249.01.T01:intron 25.0%
! TATTATTCATAAACATGGAC+TGG + Chr3:80972578-80972597 MsG0380016249.01.T01:CDS 25.0%
! TGGTAATAAAGCAAGAAAAT+TGG + Chr3:80972719-80972738 MsG0380016249.01.T01:intron 25.0%
! TTAACTTTAATGGTTTGATG+TGG + Chr3:80974877-80974896 MsG0380016249.01.T01:intron 25.0%
!! CAATTAAAATCTTTTGACGA+TGG - Chr3:80973919-80973938 None:intergenic 25.0%
!! CTTGACTGATAATGAATTAA+AGG - Chr3:80972933-80972952 None:intergenic 25.0%
!! TAATTTTATTGCTAAACCAG+TGG - Chr3:80973063-80973082 None:intergenic 25.0%
!! TGTTGAATGTTATTTGATCT+TGG - Chr3:80973424-80973443 None:intergenic 25.0%
!! TGTTTGGTTCATATTGATAA+TGG - Chr3:80974158-80974177 None:intergenic 25.0%
!! TTCTCCAAATTTTATGCAAA+TGG + Chr3:80973871-80973890 MsG0380016249.01.T01:CDS 25.0%
!!! ACAGTAGTTTTAAGAAGAAA+AGG - Chr3:80974582-80974601 None:intergenic 25.0%
!!! GATTTTAATTGTCAATGAAG+GGG + Chr3:80973928-80973947 MsG0380016249.01.T01:CDS 25.0%
ACGATGTAAACAAAGATGAT+GGG + Chr3:80975321-80975340 MsG0380016249.01.T01:CDS 30.0%
ATCATTTACTTGGGAAACAA+AGG + Chr3:80974968-80974987 MsG0380016249.01.T01:CDS 30.0%
ATGGTATGAAATGAGATGTT+TGG - Chr3:80974174-80974193 None:intergenic 30.0%
ATGTAAGGTTCTTGAAAGTA+AGG - Chr3:80974551-80974570 None:intergenic 30.0%
ATTATCAGTCAAGACTCAAA+AGG + Chr3:80972940-80972959 MsG0380016249.01.T01:intron 30.0%
CTAAAATCAATTTCATTGGG+TGG - Chr3:80973396-80973415 None:intergenic 30.0%
CTTTATTACCATTAATCAGC+GGG - Chr3:80972710-80972729 None:intergenic 30.0%
GACTTTATAATCATGAAGCA+AGG - Chr3:80972757-80972776 None:intergenic 30.0%
GCTTCCATTTGCATAAAATT+TGG - Chr3:80973878-80973897 None:intergenic 30.0%
TCATTTACTTGGGAAACAAA+GGG + Chr3:80974969-80974988 MsG0380016249.01.T01:CDS 30.0%
TGATTATAAAGTCACTGATG+TGG + Chr3:80972764-80972783 MsG0380016249.01.T01:intron 30.0%
TTACTGCTACTATTCATGTT+GGG + Chr3:80975118-80975137 MsG0380016249.01.T01:intron 30.0%
TTATCAGTCAAGACTCAAAA+GGG + Chr3:80972941-80972960 MsG0380016249.01.T01:intron 30.0%
TTTACTGCTACTATTCATGT+TGG + Chr3:80975117-80975136 MsG0380016249.01.T01:intron 30.0%
! AAAGGGTTTTCAGTAAAATC+AGG + Chr3:80972958-80972977 MsG0380016249.01.T01:intron 30.0%
! AAATCACTAGGAGTATGATA+AGG - Chr3:80973368-80973387 None:intergenic 30.0%
! ACAAAGGAAAAGCTTTTATG+TGG + Chr3:80972665-80972684 MsG0380016249.01.T01:CDS 30.0%
! ATTCAACAACGACATTTTCT+AGG + Chr3:80973436-80973455 MsG0380016249.01.T01:intron 30.0%
! ATTGATAAGTTTCTAGGTAC+AGG - Chr3:80974796-80974815 None:intergenic 30.0%
! GCTTTATTACCATTAATCAG+CGG - Chr3:80972711-80972730 None:intergenic 30.0%
! GGTAGTAATTTTCTGAGTTA+TGG + Chr3:80973500-80973519 MsG0380016249.01.T01:intron 30.0%
! TTCGACAAGAGTATATATGT+TGG + Chr3:80974768-80974787 MsG0380016249.01.T01:intron 30.0%
! TTGAACACAAATCCAGATTT+TGG + Chr3:80972618-80972637 MsG0380016249.01.T01:CDS 30.0%
! TTTTGGTATTAATAACCCTC+CGG + Chr3:80974242-80974261 MsG0380016249.01.T01:intron 30.0%
!! ACAAATCCAGATTTTGGTAA+TGG + Chr3:80972624-80972643 MsG0380016249.01.T01:CDS 30.0%
!! CACCCAATGAAATTGATTTT+AGG + Chr3:80973394-80973413 MsG0380016249.01.T01:intron 30.0%
!!! ACTTGATGAATTTTGGTTTC+AGG - Chr3:80972558-80972577 None:intergenic 30.0%
!!! CTTGATGAATTTTGGTTTCA+GGG - Chr3:80972557-80972576 None:intergenic 30.0%
AAAAGTTACTCAACAGAACG+TGG + Chr3:80972520-80972539 MsG0380016249.01.T01:CDS 35.0%
AACCAAGATTCTTGCTCAAA+AGG - Chr3:80972987-80973006 None:intergenic 35.0%
AAGAAATGTTTACGCCAACA+GGG + Chr3:80973745-80973764 MsG0380016249.01.T01:CDS 35.0%
ACATTGCCATTACCAAAATC+TGG - Chr3:80972633-80972652 None:intergenic 35.0%
CACGATGTAAACAAAGATGA+TGG + Chr3:80975320-80975339 MsG0380016249.01.T01:CDS 35.0%
GAATGATATCACTGAACCAT+AGG - Chr3:80973823-80973842 None:intergenic 35.0%
GACTAAAGATTGTTTCAGTC+AGG + Chr3:80974325-80974344 MsG0380016249.01.T01:intron 35.0%
GATACCACTTCAGTTGTTTA+TGG - Chr3:80973168-80973187 None:intergenic 35.0%
GGGAACAAGTATATGAAATC+TGG - Chr3:80972900-80972919 None:intergenic 35.0%
TGTCGCAGAATCATTTACTT+GGG + Chr3:80974959-80974978 MsG0380016249.01.T01:CDS 35.0%
TTATAGCCAGTCAAGATTTC+AGG - Chr3:80973686-80973705 None:intergenic 35.0%
TTGTCGCAGAATCATTTACT+TGG + Chr3:80974958-80974977 MsG0380016249.01.T01:CDS 35.0%
TTGTTTCCTGCAGTCATAAA+GGG + Chr3:80973305-80973324 MsG0380016249.01.T01:intron 35.0%
TTTGCCATAAACAACTGAAG+TGG + Chr3:80973161-80973180 MsG0380016249.01.T01:intron 35.0%
! ATGCTGGCTGATAAAATTGA+TGG + Chr3:80975230-80975249 MsG0380016249.01.T01:CDS 35.0%
! CATCATCTTTGTTTACATCG+TGG - Chr3:80975322-80975341 None:intergenic 35.0%
! CTTCAAAGCTCAAGTTGTAA+AGG + Chr3:80973225-80973244 MsG0380016249.01.T01:intron 35.0%
! GAAAAGGTTGTGATGATGTA+AGG - Chr3:80974566-80974585 None:intergenic 35.0%
! GGGAACATTTTCTCTTTACT+AGG + Chr3:80974018-80974037 MsG0380016249.01.T01:intron 35.0%
! TGCTGGCTGATAAAATTGAT+GGG + Chr3:80975231-80975250 MsG0380016249.01.T01:CDS 35.0%
! TTCCTTTTGAGCAAGAATCT+TGG + Chr3:80972982-80973001 MsG0380016249.01.T01:intron 35.0%
!! TAGTTAAGAACGGATTGTTC+AGG - Chr3:80974368-80974387 None:intergenic 35.0%
!! TGGTAATGGCAATGTTGAAA+TGG + Chr3:80972638-80972657 MsG0380016249.01.T01:CDS 35.0%
AATGGAAGCTAGTCAAAGTG+AGG + Chr3:80973889-80973908 MsG0380016249.01.T01:CDS 40.0%
ACCAAATTCCAGATTACCAG+GGG - Chr3:80974284-80974303 None:intergenic 40.0%
ATGGAAGCTAGTCAAAGTGA+GGG + Chr3:80973890-80973909 MsG0380016249.01.T01:CDS 40.0%
ATGTCACATTTGCTTCTACG+AGG + Chr3:80973653-80973672 MsG0380016249.01.T01:CDS 40.0%
CAAGAAATGTTTACGCCAAC+AGG + Chr3:80973744-80973763 MsG0380016249.01.T01:CDS 40.0%
CTGTTGCTCTACTAGGTAAT+GGG + Chr3:80973960-80973979 MsG0380016249.01.T01:intron 40.0%
CTGTTGGCGTAAACATTTCT+TGG - Chr3:80973746-80973765 None:intergenic 40.0%
CTTTAATGGTTTGATGTGGC+AGG + Chr3:80974881-80974900 MsG0380016249.01.T01:intron 40.0%
CTTTAGCATTTCTTCCCTGT+TGG - Chr3:80973762-80973781 None:intergenic 40.0%
GACCAAATTCCAGATTACCA+GGG - Chr3:80974285-80974304 None:intergenic 40.0%
TAGGACAGAACCATTGTTTC+CGG - Chr3:80973804-80973823 None:intergenic 40.0%
TCAATTTGCAACCAAGCGAT+TGG - Chr3:80974412-80974431 None:intergenic 40.0%
TCTGTTGCTCTACTAGGTAA+TGG + Chr3:80973959-80973978 MsG0380016249.01.T01:intron 40.0%
TGTTTCCTGCAGTCATAAAG+GGG + Chr3:80973306-80973325 MsG0380016249.01.T01:intron 40.0%
TTAATTGTCAATGAAGGGGC+TGG + Chr3:80973932-80973951 MsG0380016249.01.T01:CDS 40.0%
TTTCAGTCAGGATTTGAACC+CGG + Chr3:80974337-80974356 MsG0380016249.01.T01:intron 40.0%
! ATTTTCTAGGTTACCTGTGG+AGG + Chr3:80973449-80973468 MsG0380016249.01.T01:intron 40.0%
! CTGGTAATCTGGAATTTGGT+CGG + Chr3:80974284-80974303 MsG0380016249.01.T01:intron 40.0%
! GAAACAATGGTTCTGTCCTA+TGG + Chr3:80973804-80973823 MsG0380016249.01.T01:CDS 40.0%
! GACATTTTCTAGGTTACCTG+TGG + Chr3:80973446-80973465 MsG0380016249.01.T01:intron 40.0%
! GTTGTTTCCTGCAGTCATAA+AGG + Chr3:80973304-80973323 MsG0380016249.01.T01:intron 40.0%
! TCAAGCGCTTTTCCTGTTTT+CGG - Chr3:80975259-80975278 None:intergenic 40.0%
! TGGTAATCTGGAATTTGGTC+GGG + Chr3:80974285-80974304 MsG0380016249.01.T01:intron 40.0%
!! AAGATGATGGGATTGTGCAT+TGG + Chr3:80975333-80975352 MsG0380016249.01.T01:CDS 40.0%
!! AATTGATGGGTACCGAAAAC+AGG + Chr3:80975244-80975263 MsG0380016249.01.T01:CDS 40.0%
!! AGATGATGGGATTGTGCATT+GGG + Chr3:80975334-80975353 MsG0380016249.01.T01:CDS 40.0%
!! ATTCATAAACATGGACTGGG+AGG + Chr3:80972582-80972601 MsG0380016249.01.T01:CDS 40.0%
ACTACCAATAGCAGCTGTGT+GGG - Chr3:80973486-80973505 None:intergenic 45.0%
AGGGCTTGATCAAGTGATAG+TGG + Chr3:80974057-80974076 MsG0380016249.01.T01:intron 45.0%
ATGACTGCATATACCTCCCA+TGG - Chr3:80975212-80975231 None:intergenic 45.0%
CGACCAAATTCCAGATTACC+AGG - Chr3:80974286-80974305 None:intergenic 45.0%
GCTAATTCCTGTTTGTCCAC+TGG + Chr3:80973044-80973063 MsG0380016249.01.T01:intron 45.0%
GGTGATTCTGTTGCTCTACT+AGG + Chr3:80973953-80973972 MsG0380016249.01.T01:CDS 45.0%
GTGGACAAACAGGAATTAGC+AGG - Chr3:80973044-80973063 None:intergenic 45.0%
TACTACCAATAGCAGCTGTG+TGG - Chr3:80973487-80973506 None:intergenic 45.0%
TGACTGCATATACCTCCCAT+GGG - Chr3:80975211-80975230 None:intergenic 45.0%
TGCTAAACCAGTGGACAAAC+AGG - Chr3:80973054-80973073 None:intergenic 45.0%
TGGGTGGTCGAAAAATCACT+AGG - Chr3:80973380-80973399 None:intergenic 45.0%
! ACGGATTGTTCAGGAGAAAC+CGG - Chr3:80974359-80974378 None:intergenic 45.0%
! TTGTTGCACCCGCTGATTAA+TGG + Chr3:80972699-80972718 MsG0380016249.01.T01:CDS 45.0%
! TTTGTTGTGGATGCTGGTAC+TGG + Chr3:80975000-80975019 MsG0380016249.01.T01:CDS 45.0%
!! AAGGGCTGTGAAGTTTGTTG+TGG + Chr3:80974987-80975006 MsG0380016249.01.T01:CDS 45.0%
!! GTGAAGTTTGTTGTGGATGC+TGG + Chr3:80974994-80975013 MsG0380016249.01.T01:CDS 45.0%
AAAGAGCTATGCCGAGTCAG+TGG + Chr3:80973778-80973797 MsG0380016249.01.T01:CDS 50.0%
ACCAAGCGATTGGACTCAAG+TGG - Chr3:80974402-80974421 None:intergenic 50.0%
ACCACTTGAGTCCAATCGCT+TGG + Chr3:80974398-80974417 MsG0380016249.01.T01:intron 50.0%
CCTGCAGTCATAAAGGGGAA+GGG + Chr3:80973311-80973330 MsG0380016249.01.T01:intron 50.0%
CGGATTGTTCAGGAGAAACC+GGG - Chr3:80974358-80974377 None:intergenic 50.0%
CTGCAGTCATAAAGGGGAAG+GGG + Chr3:80973312-80973331 MsG0380016249.01.T01:intron 50.0%
GACTTGCAGCGCTTTGCTTA+GGG + Chr3:80975043-80975062 MsG0380016249.01.T01:CDS 50.0%
GAGCAGCCTGAAATCTTGAC+TGG + Chr3:80973677-80973696 MsG0380016249.01.T01:CDS 50.0%
TCCTGCAGTCATAAAGGGGA+AGG + Chr3:80973310-80973329 MsG0380016249.01.T01:intron 50.0%
TGATGGGATTGTGCATTGGG+TGG + Chr3:80975337-80975356 MsG0380016249.01.T01:CDS 50.0%
TGCAGTCATAAAGGGGAAGG+GGG + Chr3:80973313-80973332 MsG0380016249.01.T01:intron 50.0%
! ATCTGGAATTTGGTCGGGAG+AGG + Chr3:80974290-80974309 MsG0380016249.01.T01:intron 50.0%
! ATTGTTTCCGGCCACTGACT+CGG - Chr3:80973792-80973811 None:intergenic 50.0%
! GCCCCTGGTAATCTGGAATT+TGG + Chr3:80974280-80974299 MsG0380016249.01.T01:intron 50.0%
! GGAGGTATATGCAGTCATGC+TGG + Chr3:80975214-80975233 MsG0380016249.01.T01:CDS 50.0%
! GGCACAACAGCAGTTGGTAT+AGG + Chr3:80975021-80975040 MsG0380016249.01.T01:CDS 50.0%
AATAACCCTCCGGTTCCCAG+TGG + Chr3:80974252-80974271 MsG0380016249.01.T01:intron 55.0%
AGTGCCCACACAGCTGCTAT+TGG + Chr3:80973479-80973498 MsG0380016249.01.T01:intron 55.0%
CCCTTCCCCTTTATGACTGC+AGG - Chr3:80973314-80973333 None:intergenic 55.0%
GAGTCAGTGGCCGGAAACAA+TGG + Chr3:80973791-80973810 MsG0380016249.01.T01:CDS 55.0%
GCTGTTCTGTGTGCTGAGAG+AGG + Chr3:80973626-80973645 MsG0380016249.01.T01:intron 55.0%
GCTTCTGTGCAGACTCCCAT+GGG + Chr3:80975193-80975212 MsG0380016249.01.T01:intron 55.0%
GGAAAGAGCCCCTGGTAATC+TGG + Chr3:80974273-80974292 MsG0380016249.01.T01:intron 55.0%
GGACTTGCAGCGCTTTGCTT+AGG + Chr3:80975042-80975061 MsG0380016249.01.T01:CDS 55.0%
TACCAGGGGCTCTTTCCACT+GGG - Chr3:80974270-80974289 None:intergenic 55.0%
TCTTTCCACTGGGAACCGGA+GGG - Chr3:80974260-80974279 None:intergenic 55.0%
TGCAGCGCTTTGCTTAGGGT+GGG + Chr3:80975047-80975066 MsG0380016249.01.T01:intron 55.0%
TGCTTCTGTGCAGACTCCCA+TGG + Chr3:80975192-80975211 MsG0380016249.01.T01:intron 55.0%
TTACCAGGGGCTCTTTCCAC+TGG - Chr3:80974271-80974290 None:intergenic 55.0%
TTGCAGCGCTTTGCTTAGGG+TGG + Chr3:80975046-80975065 MsG0380016249.01.T01:intron 55.0%
!! GGTACTGGCACAACAGCAGT+TGG + Chr3:80975015-80975034 MsG0380016249.01.T01:CDS 55.0%
AGCTATGCCGAGTCAGTGGC+CGG + Chr3:80973782-80973801 MsG0380016249.01.T01:CDS 60.0%
CTCTTTCCACTGGGAACCGG+AGG - Chr3:80974261-80974280 None:intergenic 60.0%
GGCACTCTGACAACCTCCAC+AGG - Chr3:80973465-80973484 None:intergenic 60.0%
GGGCTCTTTCCACTGGGAAC+CGG - Chr3:80974264-80974283 None:intergenic 60.0%
TCTGTGCAGACTCCCATGGG+AGG + Chr3:80975196-80975215 MsG0380016249.01.T01:intron 60.0%
TTCCCAGTGGAAAGAGCCCC+TGG + Chr3:80974265-80974284 MsG0380016249.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80972516 80975382 80972516 ID=MsG0380016249.01;Name=MsG0380016249.01
Chr3 mRNA 80972516 80975382 80972516 ID=MsG0380016249.01.T01;Parent=MsG0380016249.01;Name=MsG0380016249.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|4|0|286
Chr3 exon 80972516 80972720 80972516 ID=MsG0380016249.01.T01:exon:10557;Parent=MsG0380016249.01.T01
Chr3 exon 80973627 80973974 80973627 ID=MsG0380016249.01.T01:exon:10558;Parent=MsG0380016249.01.T01
Chr3 exon 80974935 80975064 80974935 ID=MsG0380016249.01.T01:exon:10559;Parent=MsG0380016249.01.T01
Chr3 exon 80975205 80975382 80975205 ID=MsG0380016249.01.T01:exon:10560;Parent=MsG0380016249.01.T01
Chr3 CDS 80972516 80972720 80972516 ID=MsG0380016249.01.T01:cds;Parent=MsG0380016249.01.T01
Chr3 CDS 80973627 80973974 80973627 ID=MsG0380016249.01.T01:cds;Parent=MsG0380016249.01.T01
Chr3 CDS 80974935 80975064 80974935 ID=MsG0380016249.01.T01:cds;Parent=MsG0380016249.01.T01
Chr3 CDS 80975205 80975382 80975205 ID=MsG0380016249.01.T01:cds;Parent=MsG0380016249.01.T01
Gene Sequence

>MsG0380016249.01.T01

ATGGAAAAGTTACTCAACAGAACGTGGACATTGTCAAACCCTGAAACCAAAATTCATCAAGTTATTATTCATAAACATGGACTGGGAGGTTGTAATTTTCTATTGAACACAAATCCAGATTTTGGTAATGGCAATGTTGAAATGGATAAACAAAGGAAAAGCTTTTATGTGGTGCGCGATGATTTGTTGCACCCGCTGATTAATGCTGTTCTGTGTGCTGAGAGAGGAATTATGTCACATTTGCTTCTACGAGGAGAGCAGCCTGAAATCTTGACTGGCTATAACTTGATGTCTACAATATACGGAAATGTCACATATGTTCCAAGAAATGTTTACGCCAACAGGGAAGAAATGCTAAAGAGCTATGCCGAGTCAGTGGCCGGAAACAATGGTTCTGTCCTATGGTTCAGTGATATCATTCAAGCTTCTTTAACAAACGAATTGTCTACTTCTCCAAATTTTATGCAAATGGAAGCTAGTCAAAGTGAGGGAAACCATCGTCAAAAGATTTTAATTGTCAATGAAGGGGCTGGTGATTCTGTTGCTCTACTAGGTATTATTCGGTTAGTGCAATACTTGTCGCAGAATCATTTACTTGGGAAACAAAGGGCTGTGAAGTTTGTTGTGGATGCTGGTACTGGCACAACAGCAGTTGGTATAGGACTTGCAGCGCTTTGCTTAGGACTCCCATGGGAGGTATATGCAGTCATGCTGGCTGATAAAATTGATGGGTACCGAAAACAGGAAAAGCGCTTGATTTCTGAATTCAATAAGCATTTTAATGTTGAGTTTATTGACCACGATGTAAACAAAGATGATGGGATTGTGCATTGGGTGGAACGTGACCATCCAAGAAAGTAA
Protein sequence

>MsG0380016249.01.T01

MEKLLNRTWTLSNPETKIHQVIIHKHGLGGCNFLLNTNPDFGNGNVEMDKQRKSFYVVRDDLLHPLINAVLCAERGIMSHLLLRGEQPEILTGYNLMSTIYGNVTYVPRNVYANREEMLKSYAESVAGNNGSVLWFSDIIQASLTNELSTSPNFMQMEASQSEGNHRQKILIVNEGAGDSVALLGIIRLVQYLSQNHLLGKQRAVKFVVDAGTGTTAVGIGLAALCLGLPWEVYAVMLADKIDGYRKQEKRLISEFNKHFNVEFIDHDVNKDDGIVHWVERDHPRK*