AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041391.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041391.01.T01 MTR_7g109970 96.907 194 6 0 1 194 1 194 5.00e-137 381
MsG0780041391.01.T01 MTR_7g109970 94.330 194 6 1 1 194 1 189 9.83e-131 365
MsG0780041391.01.T01 MTR_7g109970 96.319 163 6 0 1 163 1 163 1.30e-113 321
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041391.01.T01 AT4G01900 64.737 190 64 2 2 188 3 192 7.34e-80 236

Find 63 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGGTTTGTTGAAAA+TGG 0.110086 7:-90398139 MsG0780041391.01.T01:intron
AAGCATTTCCGTTGCTTCTT+AGG 0.203611 7:+90399653 None:intergenic
AAAGATTAGCATTTGCAATT+TGG 0.268026 7:-90396678 MsG0780041391.01.T01:three_prime_UTR
GAGCAGGCTGAGAGGATGGC+TGG 0.291038 7:-90396732 MsG0780041391.01.T01:CDS
TGTCAAGGGGTTTGGTGCTC+AGG 0.292542 7:-90398091 MsG0780041391.01.T01:CDS
GGCAGTGATAAACAAAATTA+TGG 0.303869 7:-90397150 MsG0780041391.01.T01:CDS
ACTTTGTAAAACTTGGATTC+AGG 0.343647 7:+90399506 None:intergenic
ATGACGCTGAAGCTTGAAAA+AGG 0.344708 7:+90399715 None:intergenic
GGCTTCAACTTTGTAAAACT+TGG 0.345055 7:+90399499 None:intergenic
TTGAAGGGTTTGTTGAAAAT+GGG 0.351307 7:-90398138 MsG0780041391.01.T01:intron
GCGAAACCGAACGTGTTTAA+CGG 0.354519 7:-90399769 MsG0780041391.01.T01:CDS
ATTAGAGCTCAAAACCTTCC+TGG 0.371130 7:-90399616 MsG0780041391.01.T01:intron
ATTATGGAGACGGCAAGAAC+TGG 0.371236 7:-90397134 MsG0780041391.01.T01:CDS
AGCGTCATTCGCAAGCATTT+CGG 0.374401 7:-90399700 MsG0780041391.01.T01:CDS
ATTCTTATTACATCAGATAC+AGG 0.377029 7:+90396870 None:intergenic
ATCATTGTTATCAATTCTAC+AGG 0.382470 7:+90396637 None:intergenic
TTGTGAGAAGTAAGAAGAAA+TGG 0.384017 7:-90399800 MsG0780041391.01.T01:exon
GTATCTGATGTCAAGGGGTT+TGG 0.410939 7:-90398099 MsG0780041391.01.T01:CDS
GCAGGCTGAGAGGATGGCTG+GGG 0.412639 7:-90396730 MsG0780041391.01.T01:CDS
TTCAAACCGTTAAACACGTT+CGG 0.425531 7:+90399763 None:intergenic
CTCAGGTGAGCGTGGGGAGC+AGG 0.426072 7:-90396748 MsG0780041391.01.T01:intron
AAGAAGCAACGGAAATGCTT+TGG 0.436503 7:-90399650 MsG0780041391.01.T01:CDS
ACGGCAAGAACTGGGGAGAT+TGG 0.438088 7:-90397125 MsG0780041391.01.T01:CDS
GTCAAGGGGTTTGGTGCTCA+GGG 0.446794 7:-90398090 MsG0780041391.01.T01:CDS
GGGTGGCTCAAAAGAGAGGC+AGG 0.447663 7:-90398070 MsG0780041391.01.T01:CDS
ACAAAGTTGAAGCCATTCTC+AGG 0.467569 7:-90399490 MsG0780041391.01.T01:intron
GAGAATCCCTCAGGTTTCTT+CGG 0.476128 7:-90399363 MsG0780041391.01.T01:intron
CAAAGTTAAAATGGAAATAG+TGG 0.476633 7:-90397596 MsG0780041391.01.T01:CDS
AGCAGGCTGAGAGGATGGCT+GGG 0.478955 7:-90396731 MsG0780041391.01.T01:CDS
CTAGCGAGCTAGTGAGAGTT+CGG 0.509005 7:-90399837 MsG0780041391.01.T01:five_prime_UTR
TTATGGAGACGGCAAGAACT+GGG 0.538464 7:-90397133 MsG0780041391.01.T01:CDS
TGGGGAGCAGGCTGAGAGGA+TGG 0.538555 7:-90396736 MsG0780041391.01.T01:CDS
CAGGCCATGGAGAATCCCTC+AGG 0.546227 7:-90399372 MsG0780041391.01.T01:CDS
TTGTTGAAAATGGGAATTCG+TGG 0.546383 7:-90398129 MsG0780041391.01.T01:CDS
TGTCACTGTATCTGATGTCA+AGG 0.549422 7:-90398106 MsG0780041391.01.T01:CDS
TACGAATTCTCAGGTGAGCG+TGG 0.552687 7:-90396756 MsG0780041391.01.T01:intron
GTCACTGTATCTGATGTCAA+GGG 0.559409 7:-90398105 MsG0780041391.01.T01:CDS
CAGGCTGAGAGGATGGCTGG+GGG 0.559678 7:-90396729 MsG0780041391.01.T01:CDS
ACGAATTCTCAGGTGAGCGT+GGG 0.562826 7:-90396755 MsG0780041391.01.T01:intron
GATAAACAAAATTATGGAGA+CGG 0.573347 7:-90397144 MsG0780041391.01.T01:CDS
AGAGTGTTATAACCTGAGAA+TGG 0.584237 7:+90399478 None:intergenic
AAGGGGTTTGGTGCTCAGGG+TGG 0.584971 7:-90398087 MsG0780041391.01.T01:CDS
TCATTGTTATCAATTCTACA+GGG 0.585106 7:+90396638 None:intergenic
CTCAGGGTGGCTCAAAAGAG+AGG 0.595032 7:-90398074 MsG0780041391.01.T01:CDS
AGAACTGGGGAGATTGGTGA+TGG 0.606984 7:-90397119 MsG0780041391.01.T01:CDS
GGTGGCTCAAAAGAGAGGCA+GGG 0.611036 7:-90398069 MsG0780041391.01.T01:CDS
GAAACCTGAGGGATTCTCCA+TGG 0.612179 7:+90399368 None:intergenic
AATAGTGGTGAGAAAAGACC+AGG 0.614772 7:-90397581 MsG0780041391.01.T01:intron
GAAAGGAAATCGAACCAGGA+AGG 0.619778 7:+90399602 None:intergenic
CGAATTCTCAGGTGAGCGTG+GGG 0.630631 7:-90396754 MsG0780041391.01.T01:intron
TCACTGTATCTGATGTCAAG+GGG 0.633367 7:-90398104 MsG0780041391.01.T01:CDS
TTCTTATTACATCAGATACA+GGG 0.641858 7:+90396871 None:intergenic
AATGTGGTCCTAAGAAGCAA+CGG 0.643539 7:-90399661 MsG0780041391.01.T01:CDS
GATGTAATAAGAATCCGCAC+AGG 0.649812 7:-90396861 MsG0780041391.01.T01:intron
AGCGTGGGGAGCAGGCTGAG+AGG 0.654625 7:-90396740 MsG0780041391.01.T01:CDS
TATGGAGACGGCAAGAACTG+GGG 0.666410 7:-90397132 MsG0780041391.01.T01:CDS
CATTGTTATCAATTCTACAG+GGG 0.667981 7:+90396639 None:intergenic
GGCTCAAAAGAGAGGCAGGG+AGG 0.670235 7:-90398066 MsG0780041391.01.T01:intron
GTATTACCGAAGAAACCTGA+GGG 0.672298 7:+90399357 None:intergenic
GGAGCAAATGGTTACCTGTG+CGG 0.676931 7:+90396847 None:intergenic
TGTATTACCGAAGAAACCTG+AGG 0.679907 7:+90399356 None:intergenic
AGATTCTTCTCATCGCAATG+TGG 0.698371 7:-90399677 MsG0780041391.01.T01:CDS
TACAGGGGAAAAGAGAACAG+AGG 0.739593 7:+90396654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAGTTAATAAATTAATTAT+TGG - Chr7:90397320-90397339 MsG0780041391.01.T01:intron 10.0%
!! TTTCATAATAAAATAGTTTA+AGG - Chr7:90399365-90399384 MsG0780041391.01.T01:CDS 10.0%
!!! TTTTTATTGTAAAATTTGAA+GGG - Chr7:90398211-90398230 MsG0780041391.01.T01:intron 10.0%
!!! TTTTTTATTGTAAAATTTGA+AGG - Chr7:90398210-90398229 MsG0780041391.01.T01:intron 10.0%
!! AGATTCTAATAAAAAATATC+AGG + Chr7:90399346-90399365 None:intergenic 15.0%
!! ATAATAAAATAGTTTAAGGA+GGG - Chr7:90399369-90399388 MsG0780041391.01.T01:CDS 15.0%
!! TCAGTCAATAAATTAATTAT+TGG - Chr7:90397292-90397311 MsG0780041391.01.T01:intron 15.0%
!!! AGTTTTATCATTAATAGAAT+GGG - Chr7:90398032-90398051 MsG0780041391.01.T01:intron 15.0%
!!! ATGTTAATTGTTTAGAATAT+TGG + Chr7:90398869-90398888 None:intergenic 15.0%
!!! ATTTTGTTTGTAATTAAAAG+TGG + Chr7:90399144-90399163 None:intergenic 15.0%
!!! TAGTTTTATCATTAATAGAA+TGG - Chr7:90398031-90398050 MsG0780041391.01.T01:intron 15.0%
!!! TGTTAATTGTTTAGAATATT+GGG + Chr7:90398868-90398887 None:intergenic 15.0%
!! AAAGTTACAAACATAAAACA+CGG + Chr7:90398574-90398593 None:intergenic 20.0%
!! AATAGTTTAGTGATGAAATA+TGG + Chr7:90398445-90398464 None:intergenic 20.0%
!! CATAATAAAATAGTTTAAGG+AGG - Chr7:90399368-90399387 MsG0780041391.01.T01:CDS 20.0%
!! TAAAACTACTAAACTCAATT+TGG - Chr7:90399428-90399447 MsG0780041391.01.T01:intron 20.0%
!! TAACTGTTATGTTAATTAGT+TGG - Chr7:90397353-90397372 MsG0780041391.01.T01:intron 20.0%
!!! AAATTTTGCAGAGTAATAAT+CGG + Chr7:90396487-90396506 None:intergenic 20.0%
!!! AATTACATTTTTCCTTCATT+TGG - Chr7:90398622-90398641 MsG0780041391.01.T01:intron 20.0%
!!! ATTACATTTTTCCTTCATTT+GGG - Chr7:90398623-90398642 MsG0780041391.01.T01:intron 20.0%
!!! TATATATCATGCATTTTTTC+AGG - Chr7:90399187-90399206 MsG0780041391.01.T01:intron 20.0%
!!! TCTTGTTATTTTCACTAAAT+CGG - Chr7:90397084-90397103 MsG0780041391.01.T01:intron 20.0%
! AAAGATTAGCATTTGCAATT+TGG - Chr7:90399686-90399705 MsG0780041391.01.T01:CDS 25.0%
! AAATTCAGTATATTAGCAGA+AGG + Chr7:90398193-90398212 None:intergenic 25.0%
! ACAAATTCATGTTAAGAGTT+TGG - Chr7:90398385-90398404 MsG0780041391.01.T01:intron 25.0%
! ATATAGATGAACATAGCAAT+AGG + Chr7:90396787-90396806 None:intergenic 25.0%
! ATCATTGTTATCAATTCTAC+AGG + Chr7:90399730-90399749 None:intergenic 25.0%
! ATTCTTATTACATCAGATAC+AGG + Chr7:90399497-90399516 None:intergenic 25.0%
! ATTTGTCTTAGAAGTTAACA+AGG + Chr7:90398371-90398390 None:intergenic 25.0%
! CAAAGTTAAAATGGAAATAG+TGG - Chr7:90398768-90398787 MsG0780041391.01.T01:intron 25.0%
! GATAAACAAAATTATGGAGA+CGG - Chr7:90399220-90399239 MsG0780041391.01.T01:intron 25.0%
! GCAAATTCAGTTAACTATTA+TGG - Chr7:90397168-90397187 MsG0780041391.01.T01:intron 25.0%
! GTTAGTATTTATAGCCATAA+GGG - Chr7:90397515-90397534 MsG0780041391.01.T01:intron 25.0%
! TAACTAACACTGTTAATCTA+AGG + Chr7:90397259-90397278 None:intergenic 25.0%
! TCATTGTTATCAATTCTACA+GGG + Chr7:90399729-90399748 None:intergenic 25.0%
! TGGAAATAAATTATACGTCA+TGG - Chr7:90399299-90399318 MsG0780041391.01.T01:intron 25.0%
! TTAGTATTTATAGCCATAAG+GGG - Chr7:90397516-90397535 MsG0780041391.01.T01:intron 25.0%
! TTCTTATTACATCAGATACA+GGG + Chr7:90399496-90399515 None:intergenic 25.0%
! TTTGTCTTAGAAGTTAACAA+GGG + Chr7:90398370-90398389 None:intergenic 25.0%
!! CATATATGTATTTTTCATCC+AGG - Chr7:90398157-90398176 MsG0780041391.01.T01:intron 25.0%
!! CTAAATTCTGTTAGTGTTTT+TGG - Chr7:90397202-90397221 MsG0780041391.01.T01:intron 25.0%
!! CTATTGAAAATGAAACCTTT+TGG + Chr7:90397935-90397954 None:intergenic 25.0%
!! TATTGCTACAAATACTTTTG+TGG - Chr7:90397985-90398004 MsG0780041391.01.T01:intron 25.0%
!! TTTTGTTGCCAAAGTTAAAA+TGG - Chr7:90398759-90398778 MsG0780041391.01.T01:intron 25.0%
!!! AAAGAGCAAGTGTTTTTTTA+AGG + Chr7:90398496-90398515 None:intergenic 25.0%
!!! AGTTTTAAATACGAATTCTC+AGG - Chr7:90399599-90399618 MsG0780041391.01.T01:intron 25.0%
!!! CACTATTTCCATTTTAACTT+TGG + Chr7:90398770-90398789 None:intergenic 25.0%
!!! TATGTTTTTAGAGAATTCAC+TGG + Chr7:90399541-90399560 None:intergenic 25.0%
!!! TCTTTTTTTCTACTTCCAAA+AGG - Chr7:90397917-90397936 MsG0780041391.01.T01:intron 25.0%
AAATGTTAGCGCACAAATTT+AGG - Chr7:90398527-90398546 MsG0780041391.01.T01:intron 30.0%
AAGTACAAACTCAAAAGTCA+TGG + Chr7:90398082-90398101 None:intergenic 30.0%
AATTCATGTTAAGAGTTTGG+AGG - Chr7:90398388-90398407 MsG0780041391.01.T01:intron 30.0%
ACTTTGTAAAACTTGGATTC+AGG + Chr7:90396861-90396880 None:intergenic 30.0%
CATTGTTATCAATTCTACAG+GGG + Chr7:90399728-90399747 None:intergenic 30.0%
GGCAGTGATAAACAAAATTA+TGG - Chr7:90399214-90399233 MsG0780041391.01.T01:intron 30.0%
GGTTAGTATTTATAGCCATA+AGG - Chr7:90397514-90397533 MsG0780041391.01.T01:intron 30.0%
GTCGTATTGTTCTTAATGAA+GGG - Chr7:90397837-90397856 MsG0780041391.01.T01:intron 30.0%
TAGTATTTATAGCCATAAGG+GGG - Chr7:90397517-90397536 MsG0780041391.01.T01:intron 30.0%
TATGATAAGACCATTACCAT+TGG - Chr7:90398977-90398996 MsG0780041391.01.T01:intron 30.0%
TTATTTCCAGCAAAAGATGT+TGG + Chr7:90399288-90399307 None:intergenic 30.0%
TTCTTGACATTGTTTACAAG+TGG - Chr7:90397132-90397151 MsG0780041391.01.T01:CDS 30.0%
TTGTGAGAAGTAAGAAGAAA+TGG - Chr7:90396564-90396583 MsG0780041391.01.T01:three_prime_UTR 30.0%
! AATAGAGCACTAAATTTGGT+CGG + Chr7:90398345-90398364 None:intergenic 30.0%
! ACGAAAAATGCTGACTAAAT+TGG + Chr7:90399880-90399899 None:intergenic 30.0%
! TGATGGCAAAATTTTCTGTA+AGG - Chr7:90399262-90399281 MsG0780041391.01.T01:intron 30.0%
! TTCAATAGATTTTCAGCAGT+TGG - Chr7:90397947-90397966 MsG0780041391.01.T01:intron 30.0%
! TTTCTTGTTTGAACATGAAC+AGG - Chr7:90396973-90396992 MsG0780041391.01.T01:intron 30.0%
!! AATAATTGGTTTGGTCAATG+CGG - Chr7:90398132-90398151 MsG0780041391.01.T01:CDS 30.0%
!! ATTTTTCCTTCATTTGGGAT+TGG - Chr7:90398628-90398647 MsG0780041391.01.T01:intron 30.0%
!! GTAAAGCACAAACTTTTTCT+TGG - Chr7:90398953-90398972 MsG0780041391.01.T01:intron 30.0%
!! TTGAAGGGTTTGTTGAAAAT+GGG - Chr7:90398226-90398245 MsG0780041391.01.T01:intron 30.0%
!! TTTGAAGGGTTTGTTGAAAA+TGG - Chr7:90398225-90398244 MsG0780041391.01.T01:intron 30.0%
!!! AAGGTTTTGAGCTCTAATTT+TGG + Chr7:90396746-90396765 None:intergenic 30.0%
!!! AGGTTTTGAGCTCTAATTTT+GGG + Chr7:90396745-90396764 None:intergenic 30.0%
!!! GTTTTTTTGGCTAGATCTAT+TGG - Chr7:90398925-90398944 MsG0780041391.01.T01:intron 30.0%
AAACAATGTCAAGAAACCAC+AGG + Chr7:90397127-90397146 None:intergenic 35.0%
ACCAATTATTCGAGAGGTAA+AGG + Chr7:90398122-90398141 None:intergenic 35.0%
ACCTTTACCTCTCGAATAAT+TGG - Chr7:90398118-90398137 MsG0780041391.01.T01:CDS 35.0%
ACTAGGATAGGATAACTATC+AGG - Chr7:90397572-90397591 MsG0780041391.01.T01:intron 35.0%
ATGACAATGTCAGTTGTCAA+TGG - Chr7:90398887-90398906 MsG0780041391.01.T01:intron 35.0%
CAGACTAGGTTAATCTGTTA+AGG - Chr7:90397462-90397481 MsG0780041391.01.T01:intron 35.0%
CTAGGATAGGATAACTATCA+GGG - Chr7:90397573-90397592 MsG0780041391.01.T01:intron 35.0%
GATGAACATAGCAATAGGAA+AGG + Chr7:90396782-90396801 None:intergenic 35.0%
GGCTTCAACTTTGTAAAACT+TGG + Chr7:90396868-90396887 None:intergenic 35.0%
GGTCGTATTGTTCTTAATGA+AGG - Chr7:90397836-90397855 MsG0780041391.01.T01:intron 35.0%
TACAAACCAATCCCAAATGA+AGG + Chr7:90398637-90398656 None:intergenic 35.0%
TACCTCTCGAATAATTGGTT+TGG - Chr7:90398123-90398142 MsG0780041391.01.T01:CDS 35.0%
TCATTAAGAACAATACGACC+TGG + Chr7:90397836-90397855 None:intergenic 35.0%
TGAATGGAATCAATTTGGAC+CGG + Chr7:90397888-90397907 None:intergenic 35.0%
TGAGTACGATTTATCAGACT+AGG - Chr7:90397448-90397467 MsG0780041391.01.T01:intron 35.0%
TTCAAACCGTTAAACACGTT+CGG + Chr7:90396604-90396623 None:intergenic 35.0%
TTGACATTGTTTACAAGTGG+TGG - Chr7:90397135-90397154 MsG0780041391.01.T01:CDS 35.0%
TTGGATAAACCCTCTATTCT+AGG - Chr7:90397540-90397559 MsG0780041391.01.T01:intron 35.0%
TTGTTGAAAATGGGAATTCG+TGG - Chr7:90398235-90398254 MsG0780041391.01.T01:intron 35.0%
! AATGGGTTCATTACCCTATT+GGG - Chr7:90398049-90398068 MsG0780041391.01.T01:intron 35.0%
! AGAGTGTTATAACCTGAGAA+TGG + Chr7:90396889-90396908 None:intergenic 35.0%
! ATGTCAGTTGTCAATGGATT+TGG - Chr7:90398893-90398912 MsG0780041391.01.T01:intron 35.0%
! GGTGAATAGAGCACTAAATT+TGG + Chr7:90398349-90398368 None:intergenic 35.0%
! TGACATTTGGTAGTAATCAC+TGG - Chr7:90398811-90398830 MsG0780041391.01.T01:intron 35.0%
! TGTCAGTTGTCAATGGATTT+GGG - Chr7:90398894-90398913 MsG0780041391.01.T01:intron 35.0%
!! TGCTTCTAGAATATGCTCAT+TGG - Chr7:90397604-90397623 MsG0780041391.01.T01:CDS 35.0%
!! TTGGGATTGGTTTGTATACT+TGG - Chr7:90398641-90398660 MsG0780041391.01.T01:intron 35.0%
!!! TCATGCATTTTTTCAGGTTG+AGG - Chr7:90399193-90399212 MsG0780041391.01.T01:intron 35.0%
!!! TTGGGTCTTCTCAGTTTTTT+TGG - Chr7:90398912-90398931 MsG0780041391.01.T01:intron 35.0%
AAAAAGAGAGAGACGCTGAA+TGG + Chr7:90397904-90397923 None:intergenic 40.0%
AACGTAGGAACCAATGGTAA+TGG + Chr7:90398990-90399009 None:intergenic 40.0%
AACTAAGCGCCTAGAATAGA+GGG + Chr7:90397552-90397571 None:intergenic 40.0%
AAGAAGCAACGGAAATGCTT+TGG - Chr7:90396714-90396733 MsG0780041391.01.T01:CDS 40.0%
AAGCATTTCCGTTGCTTCTT+AGG + Chr7:90396714-90396733 None:intergenic 40.0%
AATAGTGGTGAGAAAAGACC+AGG - Chr7:90398783-90398802 MsG0780041391.01.T01:intron 40.0%
AATGTGGTCCTAAGAAGCAA+CGG - Chr7:90396703-90396722 MsG0780041391.01.T01:exon 40.0%
ACAAAGTTGAAGCCATTCTC+AGG - Chr7:90396874-90396893 MsG0780041391.01.T01:CDS 40.0%
ACATAAAACACGGCTGAAGT+TGG + Chr7:90398564-90398583 None:intergenic 40.0%
AGAGAATTCACTGGAGCAAA+TGG + Chr7:90399532-90399551 None:intergenic 40.0%
AGATTCTTCTCATCGCAATG+TGG - Chr7:90396687-90396706 MsG0780041391.01.T01:exon 40.0%
AGTATATTAGCAGAAGGCCA+AGG + Chr7:90398187-90398206 None:intergenic 40.0%
ATAGGAAAGGAAATCGAACC+AGG + Chr7:90396769-90396788 None:intergenic 40.0%
ATGACGCTGAAGCTTGAAAA+AGG + Chr7:90396652-90396671 None:intergenic 40.0%
ATTAGAGCTCAAAACCTTCC+TGG - Chr7:90396748-90396767 MsG0780041391.01.T01:intron 40.0%
ATTCTAGGCGCTTAGTTACT+AGG - Chr7:90397555-90397574 MsG0780041391.01.T01:intron 40.0%
ATTTATAGCCATAAGGGGGT+TGG - Chr7:90397521-90397540 MsG0780041391.01.T01:intron 40.0%
CACCACTGAACTGAAGAAAA+CGG + Chr7:90399086-90399105 None:intergenic 40.0%
CATAAAACACGGCTGAAGTT+GGG + Chr7:90398563-90398582 None:intergenic 40.0%
GAAGAATACACCATCAGTGA+AGG + Chr7:90398713-90398732 None:intergenic 40.0%
GAATGGAATCAATTTGGACC+GGG + Chr7:90397887-90397906 None:intergenic 40.0%
GACCAAACCAATTATTCGAG+AGG + Chr7:90398128-90398147 None:intergenic 40.0%
GACGCTGAATGGAATCAATT+TGG + Chr7:90397893-90397912 None:intergenic 40.0%
GATGTAATAAGAATCCGCAC+AGG - Chr7:90399503-90399522 MsG0780041391.01.T01:CDS 40.0%
GTATATTAGCAGAAGGCCAA+GGG + Chr7:90398186-90398205 None:intergenic 40.0%
GTATTACCGAAGAAACCTGA+GGG + Chr7:90397010-90397029 None:intergenic 40.0%
GTCACTGTATCTGATGTCAA+GGG - Chr7:90398259-90398278 MsG0780041391.01.T01:intron 40.0%
GTCATCTATGAGTTCAGAAG+AGG + Chr7:90399018-90399037 None:intergenic 40.0%
TAACCTTGAGAGCTTTCTCA+AGG + Chr7:90397499-90397518 None:intergenic 40.0%
TAACTAAGCGCCTAGAATAG+AGG + Chr7:90397553-90397572 None:intergenic 40.0%
TCACTGTATCTGATGTCAAG+GGG - Chr7:90398260-90398279 MsG0780041391.01.T01:intron 40.0%
TGTATTACCGAAGAAACCTG+AGG + Chr7:90397011-90397030 None:intergenic 40.0%
TGTCACTGTATCTGATGTCA+AGG - Chr7:90398258-90398277 MsG0780041391.01.T01:intron 40.0%
! AACCGTTTTCTTCAGTTCAG+TGG - Chr7:90399081-90399100 MsG0780041391.01.T01:intron 40.0%
! ACTGATGGTGTATTCTTCAC+AGG - Chr7:90398715-90398734 MsG0780041391.01.T01:intron 40.0%
! CGAAGTGCTTTAGTCTAGAT+AGG - Chr7:90397772-90397791 MsG0780041391.01.T01:intron 40.0%
! GAATGGGTTCATTACCCTAT+TGG - Chr7:90398048-90398067 MsG0780041391.01.T01:intron 40.0%
! TATTCGAGAGGTAAAGGTAC+TGG + Chr7:90398116-90398135 None:intergenic 40.0%
!! ATTCGAGAGGTAAAGGTACT+GGG + Chr7:90398115-90398134 None:intergenic 40.0%
ACATCCTTGTCCTTCACTGA+TGG - Chr7:90398700-90398719 MsG0780041391.01.T01:intron 45.0%
ACCATAAGCGCCCTTCTAAA+GGG + Chr7:90397666-90397685 None:intergenic 45.0%
AGCGTCATTCGCAAGCATTT+CGG - Chr7:90396664-90396683 MsG0780041391.01.T01:three_prime_UTR 45.0%
AGCTAAGGCGACGTCTTTAT+AGG + Chr7:90397635-90397654 None:intergenic 45.0%
AGGACACAACGCCATTCATA+AGG + Chr7:90397698-90397717 None:intergenic 45.0%
AGGCGCTTAGTTACTAGGAT+AGG - Chr7:90397560-90397579 MsG0780041391.01.T01:intron 45.0%
ATGCCTTGAGAAAGCTCTCA+AGG - Chr7:90397493-90397512 MsG0780041391.01.T01:intron 45.0%
ATGGCGTTGTGTCCTTTATC+CGG - Chr7:90397703-90397722 MsG0780041391.01.T01:intron 45.0%
ATTATGGAGACGGCAAGAAC+TGG - Chr7:90399230-90399249 MsG0780041391.01.T01:intron 45.0%
CTACCAAATGTCAACACACC+TGG + Chr7:90398804-90398823 None:intergenic 45.0%
GAAAGGAAATCGAACCAGGA+AGG + Chr7:90396765-90396784 None:intergenic 45.0%
GAGAATCCCTCAGGTTTCTT+CGG - Chr7:90397001-90397020 MsG0780041391.01.T01:intron 45.0%
GCGAAACCGAACGTGTTTAA+CGG - Chr7:90396595-90396614 MsG0780041391.01.T01:three_prime_UTR 45.0%
GCTGAAAACGTAGGAACCAA+TGG + Chr7:90398996-90399015 None:intergenic 45.0%
GGACACAACGCCATTCATAA+GGG + Chr7:90397697-90397716 None:intergenic 45.0%
GTATCTGATGTCAAGGGGTT+TGG - Chr7:90398265-90398284 MsG0780041391.01.T01:intron 45.0%
GTCACTTGAGCCCTTATGAA+TGG - Chr7:90397684-90397703 MsG0780041391.01.T01:intron 45.0%
GTTTGAACATGAACAGGCCA+TGG - Chr7:90396979-90396998 MsG0780041391.01.T01:intron 45.0%
TACACCATCAGTGAAGGACA+AGG + Chr7:90398707-90398726 None:intergenic 45.0%
TACAGGGGAAAAGAGAACAG+AGG + Chr7:90399713-90399732 None:intergenic 45.0%
TCAGAAGAGGCTGAAAACGT+AGG + Chr7:90399005-90399024 None:intergenic 45.0%
TCATGGATCTCGTCCCAATA+GGG + Chr7:90398065-90398084 None:intergenic 45.0%
TGCATTGTCTTTGATGCCTG+TGG - Chr7:90397108-90397127 MsG0780041391.01.T01:CDS 45.0%
TTATGGAGACGGCAAGAACT+GGG - Chr7:90399231-90399250 MsG0780041391.01.T01:intron 45.0%
TTCACGTGTTTCCCTTGCTT+CGG - Chr7:90397804-90397823 MsG0780041391.01.T01:intron 45.0%
TTGAGAGCTTTCTCAAGGCA+TGG + Chr7:90397494-90397513 None:intergenic 45.0%
! AGACCAGGTGTGTTGACATT+TGG - Chr7:90398798-90398817 MsG0780041391.01.T01:intron 45.0%
! GTAAGGCCAACATCTTTTGC+TGG - Chr7:90399279-90399298 MsG0780041391.01.T01:intron 45.0%
! TTTTTCATCCAGGAAGCCCT+TGG - Chr7:90398167-90398186 MsG0780041391.01.T01:intron 45.0%
!! TTCGAGAGGTAAAGGTACTG+GGG + Chr7:90398114-90398133 None:intergenic 45.0%
!! AAAAAAAATATATATGAAAA+AGG + Chr7:90397038-90397057 None:intergenic 5.0%
AAAACACGGCTGAAGTTGGG+TGG + Chr7:90398560-90398579 None:intergenic 50.0%
ACGAATTCTCAGGTGAGCGT+GGG - Chr7:90399609-90399628 MsG0780041391.01.T01:intron 50.0%
AGAACAATACGACCTGGAGC+AGG + Chr7:90397830-90397849 None:intergenic 50.0%
AGAACTGGGGAGATTGGTGA+TGG - Chr7:90399245-90399264 MsG0780041391.01.T01:intron 50.0%
AGCGCACAAATTTAGGCCTG+TGG - Chr7:90398534-90398553 MsG0780041391.01.T01:intron 50.0%
CAATTTGGACCGGGAAAACC+CGG + Chr7:90397878-90397897 None:intergenic 50.0%
CTAGCGAGCTAGTGAGAGTT+CGG - Chr7:90396527-90396546 MsG0780041391.01.T01:three_prime_UTR 50.0%
GAAACCTGAGGGATTCTCCA+TGG + Chr7:90396999-90397018 None:intergenic 50.0%
GACCATAAGCGCCCTTCTAA+AGG + Chr7:90397667-90397686 None:intergenic 50.0%
GGAGCAAATGGTTACCTGTG+CGG + Chr7:90399520-90399539 None:intergenic 50.0%
GGGTTTATCCAACCCCCTTA+TGG + Chr7:90397532-90397551 None:intergenic 50.0%
GTCATGGATCTCGTCCCAAT+AGG + Chr7:90398066-90398085 None:intergenic 50.0%
TAAAGGGCCGAAGCAAGCTA+AGG + Chr7:90397650-90397669 None:intergenic 50.0%
TACGAATTCTCAGGTGAGCG+TGG - Chr7:90399608-90399627 MsG0780041391.01.T01:intron 50.0%
TATGGAGACGGCAAGAACTG+GGG - Chr7:90399232-90399251 MsG0780041391.01.T01:intron 50.0%
TGGCGTTGTGTCCTTTATCC+GGG - Chr7:90397704-90397723 MsG0780041391.01.T01:intron 50.0%
! CTTGCTTCGGCCCTTTAGAA+GGG - Chr7:90397653-90397672 MsG0780041391.01.T01:intron 50.0%
! GTCCTTTATCCGGGTTTTCC+CGG - Chr7:90397713-90397732 MsG0780041391.01.T01:intron 50.0%
AAGCACTTCGCCTTGTCCCA+AGG + Chr7:90397762-90397781 None:intergenic 55.0%
ACGGCAAGAACTGGGGAGAT+TGG - Chr7:90399239-90399258 MsG0780041391.01.T01:intron 55.0%
CACCGGGAAAACCCGGATAA+AGG + Chr7:90397718-90397737 None:intergenic 55.0%
CGAATTCTCAGGTGAGCGTG+GGG - Chr7:90399610-90399629 MsG0780041391.01.T01:intron 55.0%
CTCAGGGTGGCTCAAAAGAG+AGG - Chr7:90398290-90398309 MsG0780041391.01.T01:intron 55.0%
GAGAGGCAGGGAGGTAAGTA+CGG - Chr7:90398307-90398326 MsG0780041391.01.T01:intron 55.0%
GCTTGCTTCGGCCCTTTAGA+AGG - Chr7:90397652-90397671 MsG0780041391.01.T01:intron 55.0%
GGTGGCTCAAAAGAGAGGCA+GGG - Chr7:90398295-90398314 MsG0780041391.01.T01:intron 55.0%
TTGTCCCAAGGCTCGTGCTT+GGG + Chr7:90397750-90397769 None:intergenic 55.0%
!! GACGTCGCCTTAGCTTGCTT+CGG - Chr7:90397640-90397659 MsG0780041391.01.T01:intron 55.0%
!! GCCCTTTAGAAGGGCGCTTA+TGG - Chr7:90397662-90397681 MsG0780041391.01.T01:intron 55.0%
!! GTCAAGGGGTTTGGTGCTCA+GGG - Chr7:90398274-90398293 MsG0780041391.01.T01:intron 55.0%
!! TGTCAAGGGGTTTGGTGCTC+AGG - Chr7:90398273-90398292 MsG0780041391.01.T01:intron 55.0%
ACCGGGAAAACCCGGATACG+GGG + Chr7:90397870-90397889 None:intergenic 60.0%
AGCAGGCTGAGAGGATGGCT+GGG - Chr7:90399633-90399652 MsG0780041391.01.T01:CDS 60.0%
CAAGCACGAGCCTTGGGACA+AGG - Chr7:90397749-90397768 MsG0780041391.01.T01:intron 60.0%
CAGGCCATGGAGAATCCCTC+AGG - Chr7:90396992-90397011 MsG0780041391.01.T01:intron 60.0%
CTTGTCCCAAGGCTCGTGCT+TGG + Chr7:90397751-90397770 None:intergenic 60.0%
GACCGGGAAAACCCGGATAC+GGG + Chr7:90397871-90397890 None:intergenic 60.0%
GCTTGTGCACCGGGAAAACC+CGG + Chr7:90397725-90397744 None:intergenic 60.0%
GGACCGGGAAAACCCGGATA+CGG + Chr7:90397872-90397891 None:intergenic 60.0%
GGCTCAAAAGAGAGGCAGGG+AGG - Chr7:90398298-90398317 MsG0780041391.01.T01:intron 60.0%
GGGTGGCTCAAAAGAGAGGC+AGG - Chr7:90398294-90398313 MsG0780041391.01.T01:intron 60.0%
TGTCCCAAGGCTCGTGCTTG+GGG + Chr7:90397749-90397768 None:intergenic 60.0%
!! AAGGGGTTTGGTGCTCAGGG+TGG - Chr7:90398277-90398296 MsG0780041391.01.T01:intron 60.0%
ACCTGGAGCAGGCCGAAGCA+AGG + Chr7:90397819-90397838 None:intergenic 65.0%
CAGGCTGAGAGGATGGCTGG+GGG - Chr7:90399635-90399654 MsG0780041391.01.T01:CDS 65.0%
CCTGGAGCAGGCCGAAGCAA+GGG + Chr7:90397818-90397837 None:intergenic 65.0%
GAGCAGGCTGAGAGGATGGC+TGG - Chr7:90399632-90399651 MsG0780041391.01.T01:CDS 65.0%
GCAGAAGGCCAAGGGCTTCC+TGG + Chr7:90398178-90398197 None:intergenic 65.0%
GCAGGCTGAGAGGATGGCTG+GGG - Chr7:90399634-90399653 MsG0780041391.01.T01:CDS 65.0%
GGCTGAAGTTGGGTGGCCAC+AGG + Chr7:90398553-90398572 None:intergenic 65.0%
GTCCCAAGGCTCGTGCTTGG+GGG + Chr7:90397748-90397767 None:intergenic 65.0%
TCCCAAGGCTCGTGCTTGGG+GGG + Chr7:90397747-90397766 None:intergenic 65.0%
TGCTTGGGGGGCTTGTGCAC+CGG + Chr7:90397735-90397754 None:intergenic 65.0%
TGGGGAGCAGGCTGAGAGGA+TGG - Chr7:90399628-90399647 MsG0780041391.01.T01:CDS 65.0%
! GCCCCGTATCCGGGTTTTCC+CGG - Chr7:90397866-90397885 MsG0780041391.01.T01:intron 65.0%
!! AGGGCACTGAGCCCCGTATC+CGG - Chr7:90397856-90397875 MsG0780041391.01.T01:intron 65.0%
AGCCCCCCAAGCACGAGCCT+TGG - Chr7:90397742-90397761 MsG0780041391.01.T01:intron 70.0%
AGCGTGGGGAGCAGGCTGAG+AGG - Chr7:90399624-90399643 MsG0780041391.01.T01:CDS 70.0%
CCCTTGCTTCGGCCTGCTCC+AGG - Chr7:90397815-90397834 MsG0780041391.01.T01:intron 70.0%
CTCAGGTGAGCGTGGGGAGC+AGG - Chr7:90399616-90399635 MsG0780041391.01.T01:intron 70.0%
GCCCCCCAAGCACGAGCCTT+GGG - Chr7:90397743-90397762 MsG0780041391.01.T01:intron 70.0%
GCTTGGGGGGCTTGTGCACC+GGG + Chr7:90397734-90397753 None:intergenic 70.0%
!! GGGCACTGAGCCCCGTATCC+GGG - Chr7:90397857-90397876 MsG0780041391.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 90396482 90399904 90396482 ID=MsG0780041391.01;Name=MsG0780041391.01
Chr7 mRNA 90396482 90399904 90396482 ID=MsG0780041391.01.T01;Parent=MsG0780041391.01;Name=MsG0780041391.01.T01;_AED=0.49;_eAED=0.49;_QI=101|1|1|1|1|1|8|222|194
Chr7 exon 90396482 90396765 90396482 ID=MsG0780041391.01.T01:exon:12389;Parent=MsG0780041391.01.T01
Chr7 exon 90396862 90396897 90396862 ID=MsG0780041391.01.T01:exon:12388;Parent=MsG0780041391.01.T01
Chr7 exon 90397108 90397177 90397108 ID=MsG0780041391.01.T01:exon:12387;Parent=MsG0780041391.01.T01
Chr7 exon 90397582 90397649 90397582 ID=MsG0780041391.01.T01:exon:12386;Parent=MsG0780041391.01.T01
Chr7 exon 90398067 90398154 90398067 ID=MsG0780041391.01.T01:exon:12385;Parent=MsG0780041391.01.T01
Chr7 exon 90399364 90399391 90399364 ID=MsG0780041391.01.T01:exon:12384;Parent=MsG0780041391.01.T01
Chr7 exon 90399491 90399536 90399491 ID=MsG0780041391.01.T01:exon:12383;Parent=MsG0780041391.01.T01
Chr7 exon 90399617 90399904 90399617 ID=MsG0780041391.01.T01:exon:12382;Parent=MsG0780041391.01.T01
Chr7 five_prime_UTR 90399804 90399904 90399804 ID=MsG0780041391.01.T01:five_prime_utr;Parent=MsG0780041391.01.T01
Chr7 CDS 90399617 90399803 90399617 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 CDS 90399491 90399536 90399491 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 CDS 90399364 90399391 90399364 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 CDS 90398067 90398154 90398067 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 CDS 90397582 90397649 90397582 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 CDS 90397108 90397177 90397108 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 CDS 90396862 90396897 90396862 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 CDS 90396704 90396765 90396704 ID=MsG0780041391.01.T01:cds;Parent=MsG0780041391.01.T01
Chr7 three_prime_UTR 90396482 90396703 90396482 ID=MsG0780041391.01.T01:three_prime_utr;Parent=MsG0780041391.01.T01
Gene Sequence

>MsG0780041391.01.T01

ATGGCTTTGATTGCGAAACCGAACGTGTTTAACGGTTTGAATTTTCATATCAATGAAACTCAAATTCCTTTTTCAAGCTTCAGCGTCATTCGCAAGCATTTCGGAGATTCTTCTCATCGCAATGTGGTCCTAAGAAGCAACGGAAATGCTTTGGTTCTTCCCAAAATTAGAGCTCAAAACCTTCCTGACTATGTTCCTGAATCCAAGTTTTACAAAGTTGAAGCCATTCTCAGGCCATGGAGAATCCCTCAGGTTTCTTCGGGTTTGTTGAAAATGGGAATTCGTGGTGTCACTGTATCTGATGTCAAGGGGTTTGGTGCTCAGGGTGGCTCAAAAGAGAGGCAGGGAGGCTCTGAATTTTCTGAAGACAATTTTGTTGCCAAAGTTAAAATGGAAATAGTGGTGAGAAAAGACCAGGTTGAGGCAGTGATAAACAAAATTATGGAGACGGCAAGAACTGGGGAGATTGGTGATGGCAAAATTTTCTTGATCCCTGTATCTGATGTAATAAGAATCCGCACAGGTGAGCGTGGGGAGCAGGCTGAGAGGATGGCTGGGGGACTAACTGACGCGTTGTATGTTTGA

Protein sequence

>MsG0780041391.01.T01

MALIAKPNVFNGLNFHINETQIPFSSFSVIRKHFGDSSHRNVVLRSNGNALVLPKIRAQNLPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAERMAGGLTDALYV*