Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024722.01.T01 | XP_003611556.1 | 97.978 | 445 | 9 | 0 | 1 | 445 | 1 | 445 | 0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024722.01.T01 | Q564G7 | 63.409 | 440 | 144 | 4 | 15 | 444 | 1 | 433 | 0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024722.01.T01 | G7K2G3 | 97.978 | 445 | 9 | 0 | 1 | 445 | 1 | 445 | 0.0 | 915 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048996.01 | MsG0580024722.01 | 0.829990 | 3.778603e-55 | 3.929839e-52 |
| MsG0080049140.01 | MsG0580024722.01 | 0.820520 | 6.567391e-53 | 5.208011e-50 |
| MsG0180000111.01 | MsG0580024722.01 | 0.840391 | 8.945332e-58 | 1.272400e-54 |
| MsG0180000314.01 | MsG0580024722.01 | 0.802844 | 4.626401e-49 | 2.289932e-46 |
| MsG0180002421.01 | MsG0580024722.01 | 0.841601 | 4.304587e-58 | 6.357584e-55 |
| MsG0180003427.01 | MsG0580024722.01 | 0.839043 | 2.006265e-57 | 2.737079e-54 |
| MsG0180003485.01 | MsG0580024722.01 | 0.809212 | 2.115316e-50 | 1.234544e-47 |
| MsG0180006000.01 | MsG0580024722.01 | 0.834237 | 3.367134e-56 | 3.971660e-53 |
| MsG0280006311.01 | MsG0580024722.01 | 0.814423 | 1.552591e-51 | 1.041385e-48 |
| MsG0280010779.01 | MsG0580024722.01 | 0.849267 | 3.607319e-60 | 6.801365e-57 |
| MsG0280010977.01 | MsG0580024722.01 | 0.856897 | 2.358121e-62 | 5.714474e-59 |
| MsG0380012788.01 | MsG0580024722.01 | 0.815282 | 1.001458e-51 | 6.875105e-49 |
| MsG0380012808.01 | MsG0580024722.01 | 0.801138 | 1.037132e-48 | 4.915846e-46 |
| MsG0380014594.01 | MsG0580024722.01 | 0.821863 | 3.219337e-53 | 2.650875e-50 |
| MsG0480018517.01 | MsG0580024722.01 | 0.861832 | 7.775190e-64 | 2.229180e-60 |
| MsG0480019635.01 | MsG0580024722.01 | 0.820197 | 7.789751e-53 | 6.122924e-50 |
| MsG0480019699.01 | MsG0580024722.01 | 0.849327 | 3.471388e-60 | 6.558118e-57 |
| MsG0480020699.01 | MsG0580024722.01 | 0.811563 | 6.577935e-51 | 4.085171e-48 |
| MsG0480020847.01 | MsG0580024722.01 | 0.860506 | 1.969371e-63 | 5.395885e-60 |
| MsG0480020965.01 | MsG0580024722.01 | 0.875523 | 2.881973e-68 | 1.349695e-64 |
| MsG0480021013.01 | MsG0580024722.01 | 0.876584 | 1.242830e-68 | 6.057440e-65 |
| MsG0480021203.01 | MsG0580024722.01 | 0.804345 | 2.258637e-49 | 1.161787e-46 |
| MsG0480021450.01 | MsG0580024722.01 | 0.806112 | 9.636037e-50 | 5.186864e-47 |
| MsG0480022313.01 | MsG0580024722.01 | 0.801866 | 7.355909e-49 | 3.551293e-46 |
| MsG0480022331.01 | MsG0580024722.01 | 0.864993 | 8.152369e-65 | 2.610885e-61 |
| MsG0480022998.01 | MsG0580024722.01 | 0.800581 | 1.347598e-48 | 6.297674e-46 |
| MsG0480023296.01 | MsG0580024722.01 | 0.820145 | 8.004101e-53 | 6.282627e-50 |
| MsG0480023672.01 | MsG0580024722.01 | 0.808625 | 2.824510e-50 | 1.622812e-47 |
| MsG0580024109.01 | MsG0580024722.01 | 0.805471 | 1.313489e-49 | 6.954959e-47 |
| MsG0580024489.01 | MsG0580024722.01 | 0.804068 | 2.579756e-49 | 1.317607e-46 |
| MsG0580024722.01 | MsG0580024758.01 | 0.818979 | 1.477258e-52 | 1.122582e-49 |
| MsG0580024722.01 | MsG0580025645.01 | 0.809711 | 1.652952e-50 | 9.776035e-48 |
| MsG0580024722.01 | MsG0580025766.01 | 0.820155 | 7.964414e-53 | 6.252876e-50 |
| MsG0580024722.01 | MsG0580025775.01 | 0.804781 | 1.832106e-49 | 9.530747e-47 |
| MsG0580024722.01 | MsG0580026186.01 | 0.829246 | 5.732301e-55 | 5.834399e-52 |
| MsG0580024722.01 | MsG0580028756.01 | 0.809133 | 2.199555e-50 | 1.281008e-47 |
| MsG0580024722.01 | MsG0580028923.01 | 0.810840 | 9.435441e-51 | 5.749183e-48 |
| MsG0580024722.01 | MsG0580029298.01 | 0.858531 | 7.728206e-63 | 1.978477e-59 |
| MsG0580024722.01 | MsG0680034618.01 | 0.834137 | 3.566160e-56 | 4.193533e-53 |
| MsG0580024722.01 | MsG0780036752.01 | 0.810746 | 9.886377e-51 | 6.008816e-48 |
| MsG0580024722.01 | MsG0780038332.01 | 0.825307 | 5.034283e-54 | 4.571598e-51 |
| MsG0580024722.01 | MsG0780039861.01 | 0.803186 | 3.931531e-49 | 1.962930e-46 |
| MsG0580024722.01 | MsG0780039878.01 | 0.814602 | 1.417393e-51 | 9.552803e-49 |
| MsG0580024722.01 | MsG0780040307.01 | 0.833733 | 4.502009e-56 | 5.230347e-53 |
| MsG0580024722.01 | MsG0780040828.01 | 0.826112 | 3.243824e-54 | 3.013942e-51 |
| MsG0580024722.01 | MsG0780041063.01 | 0.876293 | 1.566368e-68 | 7.553004e-65 |
| MsG0580024722.01 | MsG0780041735.01 | 0.821101 | 4.829550e-53 | 3.892587e-50 |
| MsG0580024722.01 | MsG0880042773.01 | 0.823862 | 1.101852e-53 | 9.602357e-51 |
| MsG0580024722.01 | MsG0880042791.01 | 0.808157 | 3.555138e-50 | 2.017844e-47 |
| MsG0580024722.01 | MsG0880042813.01 | 0.847893 | 8.668507e-60 | 1.563220e-56 |
| MsG0580024722.01 | MsG0880042845.01 | 0.822864 | 1.885839e-53 | 1.597713e-50 |
| MsG0580024722.01 | MsG0880043637.01 | 0.831291 | 1.814518e-55 | 1.960355e-52 |
| MsG0580024722.01 | MsG0880045890.01 | 0.813687 | 2.256240e-51 | 1.483429e-48 |
| MsG0580024722.01 | MsG0880046208.01 | 0.801852 | 7.403071e-49 | 3.572816e-46 |
| MsG0580024722.01 | MsG0880046646.01 | 0.809026 | 2.319384e-50 | 1.346818e-47 |
| MsG0580024722.01 | MsG0880047226.01 | 0.801968 | 7.010938e-49 | 3.393233e-46 |
| MsG0380015548.01 | MsG0580024722.01 | 0.846816 | 1.712381e-59 | 2.983639e-56 |
| MsG0380016140.01 | MsG0580024722.01 | 0.809093 | 2.243764e-50 | 1.305304e-47 |
| MsG0380016703.01 | MsG0580024722.01 | 0.874445 | 6.718107e-68 | 3.025326e-64 |
| MsG0380017159.01 | MsG0580024722.01 | 0.818731 | 1.681669e-52 | 1.269000e-49 |
| MsG0380017164.01 | MsG0580024722.01 | 0.828041 | 1.120882e-54 | 1.101363e-51 |
| MsG0480018397.01 | MsG0580024722.01 | 0.835451 | 1.665697e-56 | 2.037649e-53 |
| MsG0280006487.01 | MsG0580024722.01 | 0.807177 | 5.740848e-50 | 3.175935e-47 |
| MsG0280006540.01 | MsG0580024722.01 | 0.830691 | 2.546099e-55 | 2.702660e-52 |
| MsG0280007359.01 | MsG0580024722.01 | 0.831729 | 1.415313e-55 | 1.549401e-52 |
| MsG0280009752.01 | MsG0580024722.01 | 0.807281 | 5.455928e-50 | 3.026603e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024722.01.T01 | MTR_5g015260 | 97.978 | 445 | 9 | 0 | 1 | 445 | 1 | 445 | 0.0 | 915 |
| MsG0580024722.01.T01 | MTR_4g097240 | 64.055 | 434 | 143 | 4 | 21 | 446 | 8 | 436 | 0.0 | 588 |
| MsG0580024722.01.T01 | MTR_4g097230 | 56.911 | 369 | 150 | 2 | 81 | 446 | 60 | 422 | 1.61e-162 | 465 |
| MsG0580024722.01.T01 | MTR_4g108940 | 46.571 | 350 | 147 | 7 | 85 | 431 | 100 | 412 | 2.79e-110 | 333 |
| MsG0580024722.01.T01 | MTR_4g119880 | 44.262 | 366 | 160 | 7 | 90 | 446 | 107 | 437 | 3.86e-110 | 332 |
| MsG0580024722.01.T01 | MTR_7g108675 | 44.540 | 348 | 155 | 6 | 95 | 439 | 124 | 436 | 3.25e-108 | 328 |
| MsG0580024722.01.T01 | MTR_3g037340 | 40.189 | 423 | 204 | 10 | 19 | 431 | 34 | 417 | 1.15e-105 | 321 |
| MsG0580024722.01.T01 | MTR_8g058553 | 45.399 | 326 | 140 | 6 | 95 | 417 | 124 | 414 | 3.38e-101 | 312 |
| MsG0580024722.01.T01 | MTR_4g108950 | 46.154 | 78 | 39 | 3 | 350 | 426 | 8 | 83 | 4.86e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024722.01.T01 | AT2G22900 | 62.361 | 449 | 164 | 4 | 1 | 446 | 1 | 447 | 0.0 | 573 |
| MsG0580024722.01.T01 | AT4G37690 | 59.908 | 434 | 168 | 3 | 15 | 446 | 1 | 430 | 0.0 | 551 |
| MsG0580024722.01.T01 | AT5G07720 | 40.000 | 435 | 215 | 7 | 6 | 431 | 24 | 421 | 1.32e-114 | 344 |
| MsG0580024722.01.T01 | AT3G62720 | 46.957 | 345 | 145 | 6 | 95 | 436 | 117 | 426 | 1.53e-111 | 336 |
| MsG0580024722.01.T01 | AT3G62720 | 46.957 | 345 | 145 | 6 | 95 | 436 | 117 | 426 | 1.53e-111 | 336 |
| MsG0580024722.01.T01 | AT1G18690 | 43.236 | 377 | 175 | 6 | 57 | 431 | 141 | 480 | 4.35e-110 | 334 |
| MsG0580024722.01.T01 | AT1G18690 | 43.236 | 377 | 175 | 6 | 57 | 431 | 141 | 480 | 4.35e-110 | 334 |
| MsG0580024722.01.T01 | AT1G18690 | 43.236 | 377 | 175 | 6 | 57 | 431 | 141 | 480 | 4.35e-110 | 334 |
| MsG0580024722.01.T01 | AT1G18690 | 43.236 | 377 | 175 | 6 | 57 | 431 | 141 | 480 | 4.35e-110 | 334 |
| MsG0580024722.01.T01 | AT1G74380 | 45.058 | 344 | 152 | 5 | 90 | 431 | 114 | 422 | 1.40e-109 | 331 |
| MsG0580024722.01.T01 | AT4G02500 | 43.626 | 353 | 161 | 4 | 90 | 439 | 113 | 430 | 4.31e-108 | 328 |
| MsG0580024722.01.T01 | AT4G38310 | 69.231 | 117 | 35 | 1 | 78 | 193 | 1 | 117 | 3.90e-55 | 179 |
Find 111 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAGTTATTCGTAAATT+TGG | 0.144278 | 5:-8837854 | MsG0580024722.01.T01:CDS |
| TCCTAAGATGTTTGCTTATT+GGG | 0.175052 | 5:-8838590 | MsG0580024722.01.T01:CDS |
| CACCAGATCCACTCTGCTTC+TGG | 0.193415 | 5:+8838529 | None:intergenic |
| TTCATCCCAGTCGTCTATTT+TGG | 0.194915 | 5:+8838810 | None:intergenic |
| ATCCTAAGATGTTTGCTTAT+TGG | 0.207679 | 5:-8838591 | MsG0580024722.01.T01:CDS |
| TATAGAAGAAGATTTGTTTC+TGG | 0.226424 | 5:+8839047 | None:intergenic |
| TCTGATGGCTTTCTCTTCCT+TGG | 0.293026 | 5:-8839018 | MsG0580024722.01.T01:CDS |
| TTACCCCATTCTTCATAATC+TGG | 0.308324 | 5:+8838298 | None:intergenic |
| GTCATGGTATACTCCATTTC+AGG | 0.314443 | 5:+8838835 | None:intergenic |
| ATAGAAGAAGATTTGTTTCT+GGG | 0.318466 | 5:+8839048 | None:intergenic |
| ATGGAGGCTTGGGCTGGAAT+GGG | 0.324947 | 5:-8838331 | MsG0580024722.01.T01:CDS |
| TTAAGGTAAGGTTGTCGTTT+GGG | 0.329411 | 5:+8838938 | None:intergenic |
| CATGGAGGCTTGGGCTGGAA+TGG | 0.334539 | 5:-8838332 | MsG0580024722.01.T01:CDS |
| GCCCAATAAGCAAACATCTT+AGG | 0.336434 | 5:+8838589 | None:intergenic |
| AATATTACTTCGAGGGGTAT+TGG | 0.338476 | 5:-8838156 | MsG0580024722.01.T01:CDS |
| GTGGATTACTCTCGTATTCA+TGG | 0.344402 | 5:-8838646 | MsG0580024722.01.T01:CDS |
| TCAATGGTCATTAGATTTCA+TGG | 0.346153 | 5:-8838350 | MsG0580024722.01.T01:CDS |
| CAGGATCATCGTAGAATGTT+TGG | 0.347067 | 5:+8838854 | None:intergenic |
| AACAACAAATGGTCACCTAT+TGG | 0.350530 | 5:+8838688 | None:intergenic |
| TCTTCATAATCTGGGCTTTG+TGG | 0.354799 | 5:+8838307 | None:intergenic |
| GATCATAACCTTGTTGTTCA+TGG | 0.356395 | 5:-8838445 | MsG0580024722.01.T01:CDS |
| ATCATTGCAGCTTTCACAAC+AGG | 0.362566 | 5:+8838559 | None:intergenic |
| ATTAGATTTCATGGAGGCTT+GGG | 0.362925 | 5:-8838341 | MsG0580024722.01.T01:CDS |
| GTAAGGTTGTCGTTTGGGAT+GGG | 0.369829 | 5:+8838943 | None:intergenic |
| ATATTACTTCGAGGGGTATT+GGG | 0.374107 | 5:-8838155 | MsG0580024722.01.T01:CDS |
| CATAAAGATATTGGGGATAA+TGG | 0.377226 | 5:-8837824 | MsG0580024722.01.T01:CDS |
| CATTAGATTTCATGGAGGCT+TGG | 0.381012 | 5:-8838342 | MsG0580024722.01.T01:CDS |
| ACCAGATCCACTCTGCTTCT+GGG | 0.383710 | 5:+8838530 | None:intergenic |
| GGTAAGGTTGTCGTTTGGGA+TGG | 0.385202 | 5:+8838942 | None:intergenic |
| GAAGATTTGTTTCTGGGAAT+GGG | 0.385239 | 5:+8839054 | None:intergenic |
| TATTTGAAAGATGCTGGTTA+TGG | 0.388530 | 5:-8838007 | MsG0580024722.01.T01:CDS |
| AGAAGATTTGTTTCTGGGAA+TGG | 0.391546 | 5:+8839053 | None:intergenic |
| TACCCCATTCTTCATAATCT+GGG | 0.392557 | 5:+8838299 | None:intergenic |
| TGAAGAATCTTAACAACAAA+TGG | 0.394171 | 5:+8838677 | None:intergenic |
| CTGGTTATGGTAAAGGAAGT+TGG | 0.399264 | 5:-8837994 | MsG0580024722.01.T01:CDS |
| TGTACACTGCTGATGCTTGT+TGG | 0.406742 | 5:-8837910 | MsG0580024722.01.T01:CDS |
| GAAGAGTATTTGAAAGATGC+TGG | 0.407850 | 5:-8838013 | MsG0580024722.01.T01:CDS |
| TAAGGTTGTCGTTTGGGATG+GGG | 0.409821 | 5:+8838944 | None:intergenic |
| CTTCATAATCTGGGCTTTGT+GGG | 0.412052 | 5:+8838308 | None:intergenic |
| TCTTCTATATTTCTCTCTGA+TGG | 0.418803 | 5:-8839033 | MsG0580024722.01.T01:CDS |
| GATGGCTTTCTCTTCCTTGG+AGG | 0.422150 | 5:-8839015 | MsG0580024722.01.T01:CDS |
| ACCCAGAAGCAGAGTGGATC+TGG | 0.422459 | 5:-8838531 | MsG0580024722.01.T01:CDS |
| CATGAGAAACGGAGCTGGAC+CGG | 0.428443 | 5:-8838406 | MsG0580024722.01.T01:CDS |
| TTTAAGGTAAGGTTGTCGTT+TGG | 0.432980 | 5:+8838937 | None:intergenic |
| TGGGATGGGGTTTGTGAAGG+AGG | 0.435746 | 5:+8838957 | None:intergenic |
| AGCAAAGGAAAGAGTGTTGA+TGG | 0.438346 | 5:-8838743 | MsG0580024722.01.T01:CDS |
| ACGCTGGTGTGTTCTTGATC+AGG | 0.441615 | 5:-8838378 | MsG0580024722.01.T01:CDS |
| ATAACCTTGTTGTTCATGGC+TGG | 0.442241 | 5:-8838441 | MsG0580024722.01.T01:CDS |
| AAAGATGCTGGTTATGGTAA+AGG | 0.444724 | 5:-8838001 | MsG0580024722.01.T01:CDS |
| GATTTCATGGAGGCTTGGGC+TGG | 0.447837 | 5:-8838337 | MsG0580024722.01.T01:CDS |
| AAGCCCAGATTATGAAGAAT+GGG | 0.454167 | 5:-8838302 | MsG0580024722.01.T01:CDS |
| ATTCTACGATGATCCTGAAA+TGG | 0.454311 | 5:-8838848 | MsG0580024722.01.T01:CDS |
| GGTGGATCAAAGCGCAGATC+GGG | 0.455974 | 5:+8838880 | None:intergenic |
| ACTGCTGATGCTTGTTGGAA+TGG | 0.456658 | 5:-8837905 | MsG0580024722.01.T01:CDS |
| TTTCTCGATCGCGATCAGAT+AGG | 0.459063 | 5:+8838213 | None:intergenic |
| CCTGTAAAATGTGTAACAAA+TGG | 0.462913 | 5:+8837965 | None:intergenic |
| CTGCTGATGCTTGTTGGAAT+GGG | 0.463785 | 5:-8837904 | MsG0580024722.01.T01:CDS |
| GTTTGGGATGGGGTTTGTGA+AGG | 0.466525 | 5:+8838954 | None:intergenic |
| CGGTCCAGCTCCGTTTCTCA+TGG | 0.469309 | 5:+8838407 | None:intergenic |
| CATCATCCGTCTTTCTCTGC+AGG | 0.478033 | 5:-8838766 | MsG0580024722.01.T01:CDS |
| TCTCCGTGCAAGAATCCAAT+AGG | 0.480437 | 5:-8838703 | MsG0580024722.01.T01:CDS |
| GCCTGTCTGATCGTCTGACT+CGG | 0.492017 | 5:+8838240 | None:intergenic |
| GAAAGAGTGTTGATGGTCAC+TGG | 0.495025 | 5:-8838736 | MsG0580024722.01.T01:CDS |
| TCATTATACTTCCCACTACA+AGG | 0.496339 | 5:+8837935 | None:intergenic |
| GCATGACGCCTTCTTAACTT+AGG | 0.496571 | 5:+8838070 | None:intergenic |
| CTCACTTGATCCATGAGAAA+CGG | 0.497365 | 5:-8838417 | MsG0580024722.01.T01:CDS |
| AAAGCCCAGATTATGAAGAA+TGG | 0.499353 | 5:-8838303 | MsG0580024722.01.T01:CDS |
| ATTTGTCTTTAAAAGTTGAC+CGG | 0.502606 | 5:+8838269 | None:intergenic |
| AAGAATGGGGTAAGACTCTC+CGG | 0.506398 | 5:-8838288 | MsG0580024722.01.T01:CDS |
| ATTGGATTCTTGCACGGAGA+AGG | 0.509563 | 5:+8838706 | None:intergenic |
| GCTTCCTCTCAAACGTTACA+AGG | 0.512911 | 5:-8838467 | MsG0580024722.01.T01:CDS |
| TCGTAGAATGTTTGGTCTGG+TGG | 0.513684 | 5:+8838862 | None:intergenic |
| AGATGCATTGTTCACCGACA+TGG | 0.516301 | 5:-8838497 | MsG0580024722.01.T01:CDS |
| GCTGACAAGATTTATCTAGA+AGG | 0.520122 | 5:-8838181 | MsG0580024722.01.T01:CDS |
| CATTCTTGAGGATAATCAAA+AGG | 0.522976 | 5:+8837788 | None:intergenic |
| CCCGAGTCAGACGATCAGAC+AGG | 0.525329 | 5:-8838241 | MsG0580024722.01.T01:CDS |
| TCATCGTAGAATGTTTGGTC+TGG | 0.529616 | 5:+8838859 | None:intergenic |
| TGACCACCAAAATAGACGAC+TGG | 0.534163 | 5:-8838816 | MsG0580024722.01.T01:CDS |
| GTCTTTCTCTGCAGGAGCAA+AGG | 0.536163 | 5:-8838758 | MsG0580024722.01.T01:CDS |
| GAGAAAGTGAGTGAAGCTTA+TGG | 0.543266 | 5:-8838046 | MsG0580024722.01.T01:CDS |
| TCTTGATCAGGAACTGTCAA+TGG | 0.548000 | 5:-8838366 | MsG0580024722.01.T01:CDS |
| ATGAGAAACGGAGCTGGACC+GGG | 0.551182 | 5:-8838405 | MsG0580024722.01.T01:CDS |
| TTTGCTCCTGCAGAGAAAGA+CGG | 0.551182 | 5:+8838760 | None:intergenic |
| TGTTGTGAAAGCTGCAATGA+TGG | 0.556012 | 5:-8838557 | MsG0580024722.01.T01:CDS |
| TGGTGGATCAAAGCGCAGAT+CGG | 0.556690 | 5:+8838879 | None:intergenic |
| ACAGGTTGTCAACCTTGTAG+TGG | 0.558357 | 5:-8837947 | MsG0580024722.01.T01:CDS |
| TGATCCATGAGAAACGGAGC+TGG | 0.564919 | 5:-8838411 | MsG0580024722.01.T01:CDS |
| AAGTTGAGCCTAAGTTAAGA+AGG | 0.567104 | 5:-8838078 | MsG0580024722.01.T01:CDS |
| CCTGTCTGATCGTCTGACTC+GGG | 0.569637 | 5:+8838241 | None:intergenic |
| CAGGTTGTCAACCTTGTAGT+GGG | 0.588604 | 5:-8837946 | MsG0580024722.01.T01:CDS |
| ATGAAGCATAATCATTCTTG+AGG | 0.588958 | 5:+8837776 | None:intergenic |
| GAGCTGAAAATGCTCCTCCA+AGG | 0.589197 | 5:+8839001 | None:intergenic |
| GAAGGCGAATATTACTTCGA+GGG | 0.591672 | 5:-8838163 | MsG0580024722.01.T01:CDS |
| AGCTGGACCGGGTTAAACGC+TGG | 0.598150 | 5:-8838394 | MsG0580024722.01.T01:CDS |
| AGAAGGCGAATATTACTTCG+AGG | 0.599202 | 5:-8838164 | MsG0580024722.01.T01:CDS |
| TGATCCTTGTAACGTTTGAG+AGG | 0.599914 | 5:+8838463 | None:intergenic |
| TCACCTATTGGATTCTTGCA+CGG | 0.608907 | 5:+8838700 | None:intergenic |
| GACCACCAAAATAGACGACT+GGG | 0.610284 | 5:-8838815 | MsG0580024722.01.T01:CDS |
| CAGAAGCAGAGTGGATCTGG+TGG | 0.624600 | 5:-8838528 | MsG0580024722.01.T01:CDS |
| TCATTGCAGCTTTCACAACA+GGG | 0.636937 | 5:+8838560 | None:intergenic |
| CGTTTCTCATGGATCAAGTG+AGG | 0.643998 | 5:+8838418 | None:intergenic |
| GAACACACCAGCGTTTAACC+CGG | 0.646255 | 5:+8838387 | None:intergenic |
| AAGGCGAATATTACTTCGAG+GGG | 0.647787 | 5:-8838162 | MsG0580024722.01.T01:CDS |
| AGGAAGCTTGAAATCCATGT+CGG | 0.666037 | 5:+8838483 | None:intergenic |
| GGGATGAAAAGCGTGAGGAG+TGG | 0.666595 | 5:-8838795 | MsG0580024722.01.T01:CDS |
| AGAAGCAGAGTGGATCTGGT+GGG | 0.667841 | 5:-8838527 | MsG0580024722.01.T01:CDS |
| AGCCCAGATTATGAAGAATG+GGG | 0.678392 | 5:-8838301 | MsG0580024722.01.T01:CDS |
| CGACTGGGATGAAAAGCGTG+AGG | 0.682004 | 5:-8838800 | MsG0580024722.01.T01:CDS |
| GAGGCCAGCCATGAACAACA+AGG | 0.700083 | 5:+8838437 | None:intergenic |
| TGGCACACCCAGAAGCAGAG+TGG | 0.701722 | 5:-8838537 | MsG0580024722.01.T01:CDS |
| ATGGTCATTAGATTTCATGG+AGG | 0.731958 | 5:-8838347 | MsG0580024722.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTCTTCAAAAATAAAG+TGG | - | Chr5:8838227-8838246 | MsG0580024722.01.T01:CDS | 20.0% |
| !! | AATCAAGTTATTCGTAAATT+TGG | - | Chr5:8839038-8839057 | MsG0580024722.01.T01:CDS | 20.0% |
| ! | TGAAGAATCTTAACAACAAA+TGG | + | Chr5:8838218-8838237 | None:intergenic | 25.0% |
| !! | ATAGAAGAAGATTTGTTTCT+GGG | + | Chr5:8837847-8837866 | None:intergenic | 25.0% |
| !! | ATTTGTCTTTAAAAGTTGAC+CGG | + | Chr5:8838626-8838645 | None:intergenic | 25.0% |
| !! | GTTTTGTGCATAAAGATATT+GGG | - | Chr5:8839060-8839079 | MsG0580024722.01.T01:CDS | 25.0% |
| !! | TATAGAAGAAGATTTGTTTC+TGG | + | Chr5:8837848-8837867 | None:intergenic | 25.0% |
| !! | TTTTGTGCATAAAGATATTG+GGG | - | Chr5:8839061-8839080 | MsG0580024722.01.T01:CDS | 25.0% |
| ATCCTAAGATGTTTGCTTAT+TGG | - | Chr5:8838301-8838320 | MsG0580024722.01.T01:CDS | 30.0% | |
| CATAAAGATATTGGGGATAA+TGG | - | Chr5:8839068-8839087 | MsG0580024722.01.T01:CDS | 30.0% | |
| CATTCTTGAGGATAATCAAA+AGG | + | Chr5:8839107-8839126 | None:intergenic | 30.0% | |
| CCTGTAAAATGTGTAACAAA+TGG | + | Chr5:8838930-8838949 | None:intergenic | 30.0% | |
| TCAATGGTCATTAGATTTCA+TGG | - | Chr5:8838542-8838561 | MsG0580024722.01.T01:CDS | 30.0% | |
| TCCTAAGATGTTTGCTTATT+GGG | - | Chr5:8838302-8838321 | MsG0580024722.01.T01:CDS | 30.0% | |
| TCTTCTATATTTCTCTCTGA+TGG | - | Chr5:8837859-8837878 | MsG0580024722.01.T01:CDS | 30.0% | |
| ! | TATTTGAAAGATGCTGGTTA+TGG | - | Chr5:8838885-8838904 | MsG0580024722.01.T01:CDS | 30.0% |
| ! | TTCAGCTCTTTTACTTGTTT+GGG | - | Chr5:8837906-8837925 | MsG0580024722.01.T01:CDS | 30.0% |
| ! | TTTCAGCTCTTTTACTTGTT+TGG | - | Chr5:8837905-8837924 | MsG0580024722.01.T01:CDS | 30.0% |
| !! | CCATTTGTTACACATTTTAC+AGG | - | Chr5:8838927-8838946 | MsG0580024722.01.T01:CDS | 30.0% |
| !! | GGTTTTGTGCATAAAGATAT+TGG | - | Chr5:8839059-8839078 | MsG0580024722.01.T01:CDS | 30.0% |
| !!! | GTTGTTTTTGTGAGGTTTTA+AGG | + | Chr5:8837974-8837993 | None:intergenic | 30.0% |
| !!! | TTTTGTGAGGTTTTAAGGTA+AGG | + | Chr5:8837969-8837988 | None:intergenic | 30.0% |
| AAAGCCCAGATTATGAAGAA+TGG | - | Chr5:8838589-8838608 | MsG0580024722.01.T01:CDS | 35.0% | |
| AACAACAAATGGTCACCTAT+TGG | + | Chr5:8838207-8838226 | None:intergenic | 35.0% | |
| AAGCCCAGATTATGAAGAAT+GGG | - | Chr5:8838590-8838609 | MsG0580024722.01.T01:CDS | 35.0% | |
| AAGTTGAGCCTAAGTTAAGA+AGG | - | Chr5:8838814-8838833 | MsG0580024722.01.T01:CDS | 35.0% | |
| ATGGTCATTAGATTTCATGG+AGG | - | Chr5:8838545-8838564 | MsG0580024722.01.T01:CDS | 35.0% | |
| ATTAGATTTCATGGAGGCTT+GGG | - | Chr5:8838551-8838570 | MsG0580024722.01.T01:CDS | 35.0% | |
| ATTCTACGATGATCCTGAAA+TGG | - | Chr5:8838044-8838063 | MsG0580024722.01.T01:CDS | 35.0% | |
| GCTGACAAGATTTATCTAGA+AGG | - | Chr5:8838711-8838730 | MsG0580024722.01.T01:CDS | 35.0% | |
| TACCCCATTCTTCATAATCT+GGG | + | Chr5:8838596-8838615 | None:intergenic | 35.0% | |
| TCATTATACTTCCCACTACA+AGG | + | Chr5:8838960-8838979 | None:intergenic | 35.0% | |
| TTACCCCATTCTTCATAATC+TGG | + | Chr5:8838597-8838616 | None:intergenic | 35.0% | |
| ! | AAAGATGCTGGTTATGGTAA+AGG | - | Chr5:8838891-8838910 | MsG0580024722.01.T01:CDS | 35.0% |
| ! | AATATTACTTCGAGGGGTAT+TGG | - | Chr5:8838736-8838755 | MsG0580024722.01.T01:CDS | 35.0% |
| ! | TCAGCTCTTTTACTTGTTTG+GGG | - | Chr5:8837907-8837926 | MsG0580024722.01.T01:CDS | 35.0% |
| ! | TTAAGGTAAGGTTGTCGTTT+GGG | + | Chr5:8837957-8837976 | None:intergenic | 35.0% |
| ! | TTTAAGGTAAGGTTGTCGTT+TGG | + | Chr5:8837958-8837977 | None:intergenic | 35.0% |
| !! | AGAAGATTTGTTTCTGGGAA+TGG | + | Chr5:8837842-8837861 | None:intergenic | 35.0% |
| !! | ATATTACTTCGAGGGGTATT+GGG | - | Chr5:8838737-8838756 | MsG0580024722.01.T01:CDS | 35.0% |
| !! | GAAGAGTATTTGAAAGATGC+TGG | - | Chr5:8838879-8838898 | MsG0580024722.01.T01:CDS | 35.0% |
| !! | GAAGATTTGTTTCTGGGAAT+GGG | + | Chr5:8837841-8837860 | None:intergenic | 35.0% |
| !! | GATCATAACCTTGTTGTTCA+TGG | - | Chr5:8838447-8838466 | MsG0580024722.01.T01:CDS | 35.0% |
| !!! | GAAACAACGTTGTTTTTGTG+AGG | + | Chr5:8837982-8838001 | None:intergenic | 35.0% |
| AAGGCGAATATTACTTCGAG+GGG | - | Chr5:8838730-8838749 | MsG0580024722.01.T01:CDS | 40.0% | |
| AGAAGGCGAATATTACTTCG+AGG | - | Chr5:8838728-8838747 | MsG0580024722.01.T01:CDS | 40.0% | |
| AGCCCAGATTATGAAGAATG+GGG | - | Chr5:8838591-8838610 | MsG0580024722.01.T01:CDS | 40.0% | |
| AGGAAGCTTGAAATCCATGT+CGG | + | Chr5:8838412-8838431 | None:intergenic | 40.0% | |
| ATCATTGCAGCTTTCACAAC+AGG | + | Chr5:8838336-8838355 | None:intergenic | 40.0% | |
| CAGGATCATCGTAGAATGTT+TGG | + | Chr5:8838041-8838060 | None:intergenic | 40.0% | |
| CATTAGATTTCATGGAGGCT+TGG | - | Chr5:8838550-8838569 | MsG0580024722.01.T01:CDS | 40.0% | |
| CGCGATCGAGAAAGAAAAAT+GGG | - | Chr5:8838689-8838708 | MsG0580024722.01.T01:CDS | 40.0% | |
| CTCACTTGATCCATGAGAAA+CGG | - | Chr5:8838475-8838494 | MsG0580024722.01.T01:CDS | 40.0% | |
| CTGGTTATGGTAAAGGAAGT+TGG | - | Chr5:8838898-8838917 | MsG0580024722.01.T01:CDS | 40.0% | |
| GAAGGCGAATATTACTTCGA+GGG | - | Chr5:8838729-8838748 | MsG0580024722.01.T01:CDS | 40.0% | |
| GAGAAAGTGAGTGAAGCTTA+TGG | - | Chr5:8838846-8838865 | MsG0580024722.01.T01:CDS | 40.0% | |
| GCCCAATAAGCAAACATCTT+AGG | + | Chr5:8838306-8838325 | None:intergenic | 40.0% | |
| GTCATGGTATACTCCATTTC+AGG | + | Chr5:8838060-8838079 | None:intergenic | 40.0% | |
| TCACCTATTGGATTCTTGCA+CGG | + | Chr5:8838195-8838214 | None:intergenic | 40.0% | |
| TCATCGTAGAATGTTTGGTC+TGG | + | Chr5:8838036-8838055 | None:intergenic | 40.0% | |
| TCATTGCAGCTTTCACAACA+GGG | + | Chr5:8838335-8838354 | None:intergenic | 40.0% | |
| TCGCGATCGAGAAAGAAAAA+TGG | - | Chr5:8838688-8838707 | MsG0580024722.01.T01:CDS | 40.0% | |
| TCTTCATAATCTGGGCTTTG+TGG | + | Chr5:8838588-8838607 | None:intergenic | 40.0% | |
| TCTTGATCAGGAACTGTCAA+TGG | - | Chr5:8838526-8838545 | MsG0580024722.01.T01:CDS | 40.0% | |
| TGATCCTTGTAACGTTTGAG+AGG | + | Chr5:8838432-8838451 | None:intergenic | 40.0% | |
| TGTTGTGAAAGCTGCAATGA+TGG | - | Chr5:8838335-8838354 | MsG0580024722.01.T01:CDS | 40.0% | |
| ! | CTTCATAATCTGGGCTTTGT+GGG | + | Chr5:8838587-8838606 | None:intergenic | 40.0% |
| ! | GTGGATTACTCTCGTATTCA+TGG | - | Chr5:8838246-8838265 | MsG0580024722.01.T01:CDS | 40.0% |
| ! | TTCATCCCAGTCGTCTATTT+TGG | + | Chr5:8838085-8838104 | None:intergenic | 40.0% |
| !! | AGCAAAGGAAAGAGTGTTGA+TGG | - | Chr5:8838149-8838168 | MsG0580024722.01.T01:CDS | 40.0% |
| !! | ATAACCTTGTTGTTCATGGC+TGG | - | Chr5:8838451-8838470 | MsG0580024722.01.T01:CDS | 40.0% |
| !! | CTCTCACTTTTCTTCCATCA+TGG | - | Chr5:8837810-8837829 | MsG0580024722.01.T01:CDS | 40.0% |
| AAGAATGGGGTAAGACTCTC+CGG | - | Chr5:8838604-8838623 | MsG0580024722.01.T01:CDS | 45.0% | |
| ACAGGTTGTCAACCTTGTAG+TGG | - | Chr5:8838945-8838964 | MsG0580024722.01.T01:CDS | 45.0% | |
| AGATGCATTGTTCACCGACA+TGG | - | Chr5:8838395-8838414 | MsG0580024722.01.T01:CDS | 45.0% | |
| ATTGGATTCTTGCACGGAGA+AGG | + | Chr5:8838189-8838208 | None:intergenic | 45.0% | |
| CAGGTTGTCAACCTTGTAGT+GGG | - | Chr5:8838946-8838965 | MsG0580024722.01.T01:CDS | 45.0% | |
| CGTTTCTCATGGATCAAGTG+AGG | + | Chr5:8838477-8838496 | None:intergenic | 45.0% | |
| GACCACCAAAATAGACGACT+GGG | - | Chr5:8838077-8838096 | MsG0580024722.01.T01:CDS | 45.0% | |
| GCATGACGCCTTCTTAACTT+AGG | + | Chr5:8838825-8838844 | None:intergenic | 45.0% | |
| GCTTCCTCTCAAACGTTACA+AGG | - | Chr5:8838425-8838444 | MsG0580024722.01.T01:CDS | 45.0% | |
| TCGTAGAATGTTTGGTCTGG+TGG | + | Chr5:8838033-8838052 | None:intergenic | 45.0% | |
| TCTCCGTGCAAGAATCCAAT+AGG | - | Chr5:8838189-8838208 | MsG0580024722.01.T01:CDS | 45.0% | |
| TCTGATGGCTTTCTCTTCCT+TGG | - | Chr5:8837874-8837893 | MsG0580024722.01.T01:CDS | 45.0% | |
| TGACCACCAAAATAGACGAC+TGG | - | Chr5:8838076-8838095 | MsG0580024722.01.T01:CDS | 45.0% | |
| TGTACACTGCTGATGCTTGT+TGG | - | Chr5:8838982-8839001 | MsG0580024722.01.T01:CDS | 45.0% | |
| TTTCTCGATCGCGATCAGAT+AGG | + | Chr5:8838682-8838701 | None:intergenic | 45.0% | |
| TTTGCTCCTGCAGAGAAAGA+CGG | + | Chr5:8838135-8838154 | None:intergenic | 45.0% | |
| ! | ACTGCTGATGCTTGTTGGAA+TGG | - | Chr5:8838987-8839006 | MsG0580024722.01.T01:CDS | 45.0% |
| ! | CTGCTGATGCTTGTTGGAAT+GGG | - | Chr5:8838988-8839007 | MsG0580024722.01.T01:CDS | 45.0% |
| ! | GTAAGGTTGTCGTTTGGGAT+GGG | + | Chr5:8837952-8837971 | None:intergenic | 45.0% |
| ! | TAAGGTTGTCGTTTGGGATG+GGG | + | Chr5:8837951-8837970 | None:intergenic | 45.0% |
| !! | ATCCCAGTCGTCTATTTTGG+TGG | + | Chr5:8838082-8838101 | None:intergenic | 45.0% |
| !! | GAAAGAGTGTTGATGGTCAC+TGG | - | Chr5:8838156-8838175 | MsG0580024722.01.T01:CDS | 45.0% |
| !!! | GTCGTCTATTTTGGTGGTCA+TGG | + | Chr5:8838076-8838095 | None:intergenic | 45.0% |
| ACCAGATCCACTCTGCTTCT+GGG | + | Chr5:8838365-8838384 | None:intergenic | 50.0% | |
| ACGCTGGTGTGTTCTTGATC+AGG | - | Chr5:8838514-8838533 | MsG0580024722.01.T01:CDS | 50.0% | |
| AGAAGCAGAGTGGATCTGGT+GGG | - | Chr5:8838365-8838384 | MsG0580024722.01.T01:CDS | 50.0% | |
| CATCATCCGTCTTTCTCTGC+AGG | - | Chr5:8838126-8838145 | MsG0580024722.01.T01:CDS | 50.0% | |
| GAACACACCAGCGTTTAACC+CGG | + | Chr5:8838508-8838527 | None:intergenic | 50.0% | |
| GAGCTGAAAATGCTCCTCCA+AGG | + | Chr5:8837894-8837913 | None:intergenic | 50.0% | |
| GATGGCTTTCTCTTCCTTGG+AGG | - | Chr5:8837877-8837896 | MsG0580024722.01.T01:CDS | 50.0% | |
| GTCTTTCTCTGCAGGAGCAA+AGG | - | Chr5:8838134-8838153 | MsG0580024722.01.T01:CDS | 50.0% | |
| TGATCCATGAGAAACGGAGC+TGG | - | Chr5:8838481-8838500 | MsG0580024722.01.T01:CDS | 50.0% | |
| ! | GGTAAGGTTGTCGTTTGGGA+TGG | + | Chr5:8837953-8837972 | None:intergenic | 50.0% |
| ! | GTTTGGGATGGGGTTTGTGA+AGG | + | Chr5:8837941-8837960 | None:intergenic | 50.0% |
| ! | TGGTGGATCAAAGCGCAGAT+CGG | + | Chr5:8838016-8838035 | None:intergenic | 50.0% |
| !! | GGGAATGGGTTTTGCCATGA+TGG | + | Chr5:8837827-8837846 | None:intergenic | 50.0% |
| ACCCAGAAGCAGAGTGGATC+TGG | - | Chr5:8838361-8838380 | MsG0580024722.01.T01:CDS | 55.0% | |
| ATGAGAAACGGAGCTGGACC+GGG | - | Chr5:8838487-8838506 | MsG0580024722.01.T01:CDS | 55.0% | |
| CACCAGATCCACTCTGCTTC+TGG | + | Chr5:8838366-8838385 | None:intergenic | 55.0% | |
| CAGAAGCAGAGTGGATCTGG+TGG | - | Chr5:8838364-8838383 | MsG0580024722.01.T01:CDS | 55.0% | |
| CATGAGAAACGGAGCTGGAC+CGG | - | Chr5:8838486-8838505 | MsG0580024722.01.T01:CDS | 55.0% | |
| CCTGTCTGATCGTCTGACTC+GGG | + | Chr5:8838654-8838673 | None:intergenic | 55.0% | |
| GAGGCCAGCCATGAACAACA+AGG | + | Chr5:8838458-8838477 | None:intergenic | 55.0% | |
| GATTTCATGGAGGCTTGGGC+TGG | - | Chr5:8838555-8838574 | MsG0580024722.01.T01:CDS | 55.0% | |
| GCCTGTCTGATCGTCTGACT+CGG | + | Chr5:8838655-8838674 | None:intergenic | 55.0% | |
| GGTGGATCAAAGCGCAGATC+GGG | + | Chr5:8838015-8838034 | None:intergenic | 55.0% | |
| TGGGATGGGGTTTGTGAAGG+AGG | + | Chr5:8837938-8837957 | None:intergenic | 55.0% | |
| ! | ATGGAGGCTTGGGCTGGAAT+GGG | - | Chr5:8838561-8838580 | MsG0580024722.01.T01:CDS | 55.0% |
| ! | CGACTGGGATGAAAAGCGTG+AGG | - | Chr5:8838092-8838111 | MsG0580024722.01.T01:CDS | 55.0% |
| ! | GGGATGAAAAGCGTGAGGAG+TGG | - | Chr5:8838097-8838116 | MsG0580024722.01.T01:CDS | 55.0% |
| AGCTGGACCGGGTTAAACGC+TGG | - | Chr5:8838498-8838517 | MsG0580024722.01.T01:CDS | 60.0% | |
| CCCGAGTCAGACGATCAGAC+AGG | - | Chr5:8838651-8838670 | MsG0580024722.01.T01:CDS | 60.0% | |
| CGGTCCAGCTCCGTTTCTCA+TGG | + | Chr5:8838488-8838507 | None:intergenic | 60.0% | |
| TGGCACACCCAGAAGCAGAG+TGG | - | Chr5:8838355-8838374 | MsG0580024722.01.T01:CDS | 60.0% | |
| ! | CATGGAGGCTTGGGCTGGAA+TGG | - | Chr5:8838560-8838579 | MsG0580024722.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 8837787 | 8839127 | 8837787 | ID=MsG0580024722.01;Name=MsG0580024722.01 |
| Chr5 | mRNA | 8837787 | 8839127 | 8837787 | ID=MsG0580024722.01.T01;Parent=MsG0580024722.01;Name=MsG0580024722.01.T01;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|446 |
| Chr5 | exon | 8837787 | 8839127 | 8837787 | ID=MsG0580024722.01.T01:exon:2839;Parent=MsG0580024722.01.T01 |
| Chr5 | CDS | 8837787 | 8839127 | 8837787 | ID=MsG0580024722.01.T01:cds;Parent=MsG0580024722.01.T01 |
| Gene Sequence |
| Protein sequence |
