AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032380.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032380.01.T01 MTR_6g039820 78.488 344 23 2 5 298 1 343 0.0 537
MsG0680032380.01.T01 MTR_1g097850 60.058 343 72 4 5 297 1 328 3.20e-142 404
MsG0680032380.01.T01 MTR_1g097850 68.302 265 69 2 5 269 1 250 2.45e-132 376
MsG0680032380.01.T01 MTR_3g013430 51.297 347 117 3 2 298 109 453 3.90e-118 348
MsG0680032380.01.T01 MTR_8g041330 47.720 329 120 3 20 298 36 362 2.14e-102 305
MsG0680032380.01.T01 MTR_6g040230 60.145 276 39 6 90 298 225 496 2.34e-96 293
MsG0680032380.01.T01 MTR_2g054370 33.778 225 137 4 33 252 59 276 8.68e-33 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032380.01.T01 AT1G74320 52.744 328 103 4 21 298 20 345 2.47e-116 339
MsG0680032380.01.T01 AT4G09760 48.986 345 122 7 5 298 1 342 5.76e-114 333
MsG0680032380.01.T01 AT4G09760 48.986 345 122 7 5 298 1 342 5.76e-114 333
MsG0680032380.01.T01 AT1G71697 47.826 345 127 5 5 297 1 344 5.03e-111 325
MsG0680032380.01.T01 AT4G09760 55.556 225 97 3 5 228 1 223 4.60e-90 269
MsG0680032380.01.T01 AT4G09760 54.286 210 93 3 5 213 1 208 3.30e-81 244
MsG0680032380.01.T01 AT2G26830 36.667 210 127 2 39 243 58 266 7.01e-38 138

Find 63 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCCTTTCATTTGGATTT+TGG 0.109294 6:+39715060 MsG0680032380.01.T01:three_prime_UTR
GTTAAAGAAGCCTACTTTAT+TGG 0.134694 6:+39714887 MsG0680032380.01.T01:CDS
CAAAAGGATATAAAGAATTT+TGG 0.157757 6:+39713197 MsG0680032380.01.T01:CDS
ATAAAGTAGGCTTCTTTAAC+TGG 0.261588 6:-39714884 None:intergenic
GGACAGGGTCCGCGCCTTCT+TGG 0.279099 6:+39711246 MsG0680032380.01.T01:CDS
GCAGCTGTGGCTGTAGATTT+AGG 0.289983 6:+39711024 MsG0680032380.01.T01:CDS
GCTATCAACGAAGATATTTC+AGG 0.295078 6:-39712987 None:intergenic
TGTCACAATGATCTACAATA+TGG 0.312751 6:+39713293 MsG0680032380.01.T01:CDS
CTTTGTAATCCCCTTTCATT+TGG 0.314612 6:+39715053 MsG0680032380.01.T01:three_prime_UTR
TGGTCATGTTAGAAGGGTTT+TGG 0.318564 6:+39711143 MsG0680032380.01.T01:CDS
TCGACATACACTCAAATGTT+TGG 0.349159 6:-39711218 None:intergenic
GTTGAGGTGAATCCCTTAAA+AGG 0.360377 6:+39711072 MsG0680032380.01.T01:CDS
ATCGCAAGGTCAAATGCAAC+TGG 0.367200 6:-39713520 None:intergenic
AAAAGGTGCAATGACAAATC+AGG 0.389457 6:+39711089 MsG0680032380.01.T01:CDS
CTTCTTGGTCGGTTCACTAC+TGG 0.399364 6:+39711261 MsG0680032380.01.T01:CDS
AAAGTGATGGTCATGTTAGA+AGG 0.403264 6:+39711136 MsG0680032380.01.T01:CDS
TCGGATGAAAATCAAGAGAT+TGG 0.408637 6:+39713266 MsG0680032380.01.T01:CDS
GATCATTTCTTTCTGTGAAA+TGG 0.429694 6:+39713540 MsG0680032380.01.T01:CDS
GTGCAAAGAAGGCTCAGATT+TGG 0.434338 6:+39713048 MsG0680032380.01.T01:CDS
TCAAGAACATGAGGCGTGTC+GGG 0.434343 6:-39713576 None:intergenic
TATGCTGCGGGCATTGTTAT+CGG 0.436276 6:+39713247 MsG0680032380.01.T01:CDS
ATCCCAAAATCCAAATGAAA+GGG 0.450829 6:-39715063 None:intergenic
AGACATTTGAATTGTTGAAA+GGG 0.457193 6:+39710968 MsG0680032380.01.T01:CDS
AAGACATTTGAATTGTTGAA+AGG 0.469355 6:+39710967 MsG0680032380.01.T01:CDS
TCATATGCCTGGTGCAAAGA+AGG 0.476216 6:+39713037 MsG0680032380.01.T01:CDS
ATCTGAGCCTTCTTTGCACC+AGG 0.486876 6:-39713044 None:intergenic
TAAAAGTTTATGCTCGCAAA+AGG 0.492692 6:+39713181 MsG0680032380.01.T01:CDS
TTTCACAATCTTCATATGCC+TGG 0.492944 6:+39713026 MsG0680032380.01.T01:CDS
TTGAAGAGTTCATTCATGCC+CGG 0.504881 6:+39711289 MsG0680032380.01.T01:CDS
AGCAATTATGCCAATAAAGT+AGG 0.516378 6:-39714897 None:intergenic
CTCAGATTTGGCAGAGAATG+AGG 0.517306 6:+39713060 MsG0680032380.01.T01:CDS
AATCCCAAAATCCAAATGAA+AGG 0.521684 6:-39715064 None:intergenic
TTTGAGTGTATGTCGAAGAA+TGG 0.526924 6:+39711225 MsG0680032380.01.T01:CDS
TACAATTGACTTTGACTACA+AGG 0.531304 6:+39714833 MsG0680032380.01.T01:CDS
GTCAAGAACATGAGGCGTGT+CGG 0.538683 6:-39713577 None:intergenic
AGGGTCCGCGCCTTCTTGGT+CGG 0.538855 6:+39711250 MsG0680032380.01.T01:CDS
TGAAGAGTTCATTCATGCCC+GGG 0.542011 6:+39711290 MsG0680032380.01.T01:CDS
TATCCACATGCAGAAAGTGA+TGG 0.548317 6:+39710939 None:intergenic
GTGTATGTCGAAGAATGGAC+AGG 0.552928 6:+39711230 MsG0680032380.01.T01:CDS
ACAATATGGTAACATCATGA+TGG 0.554878 6:+39713307 MsG0680032380.01.T01:CDS
CATTTCTTTCTGTGAAATGG+CGG 0.555566 6:+39713543 MsG0680032380.01.T01:CDS
ATTATATGGCGAAGGAGTTG+AGG 0.566600 6:+39711170 MsG0680032380.01.T01:CDS
AAGTGATGGTCATGTTAGAA+GGG 0.567355 6:+39711137 MsG0680032380.01.T01:CDS
CTATCAACGAAGATATTTCA+GGG 0.568554 6:-39712986 None:intergenic
ACAAGGAGTTCTCAAGGCAG+AGG 0.574763 6:+39714850 MsG0680032380.01.T01:CDS
TGTTGAGTTAAGTATGCTGC+GGG 0.578967 6:+39713235 MsG0680032380.01.T01:CDS
TTGGTTCGATTATATGGCGA+AGG 0.583342 6:+39711162 MsG0680032380.01.T01:CDS
CACAGAAAGAAATGATCGCA+AGG 0.591180 6:-39713534 None:intergenic
TTGACTACAAGGAGTTCTCA+AGG 0.595449 6:+39714844 MsG0680032380.01.T01:CDS
ACGAAGATATTTCAGGGTCG+CGG 0.603740 6:-39712980 None:intergenic
AAGATATTTCAGGGTCGCGG+AGG 0.609947 6:-39712977 None:intergenic
CTTGACTACAGTAAATATCC+CGG 0.613111 6:+39713594 MsG0680032380.01.T01:CDS
AATGAAAGTTCTTGCAGCTG+TGG 0.613557 6:+39711011 MsG0680032380.01.T01:CDS
TCCCAAAATCCAAATGAAAG+GGG 0.623632 6:-39715062 None:intergenic
AGAACATGAGGCGTGTCGGG+TGG 0.631959 6:-39713573 None:intergenic
CAGTAGTGAACCGACCAAGA+AGG 0.632842 6:-39711260 None:intergenic
AATTGGCCGACGAAAAGTGA+TGG 0.634847 6:+39711123 MsG0680032380.01.T01:CDS
TCGCAAGGTCAAATGCAACT+GGG 0.649429 6:-39713519 None:intergenic
TGATGATGTGAGTACTGTTG+AGG 0.658386 6:+39711056 MsG0680032380.01.T01:CDS
TTACTGTAGTCAAGAACATG+AGG 0.665640 6:-39713585 None:intergenic
ATGTTGAGTTAAGTATGCTG+CGG 0.669916 6:+39713234 MsG0680032380.01.T01:CDS
GTGAACCGACCAAGAAGGCG+CGG 0.686133 6:-39711255 None:intergenic
TGTATGTCGAAGAATGGACA+GGG 0.690528 6:+39711231 MsG0680032380.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTATATACAAATAAA+AGG + Chr6:39712160-39712179 MsG0680032380.01.T01:intron 10.0%
!! AAATAAACTATAACAATTGT+AGG - Chr6:39712701-39712720 None:intergenic 15.0%
!! AATAAACTATAACAATTGTA+GGG - Chr6:39712700-39712719 None:intergenic 15.0%
!! ATTGAAAATAAATGTAATTG+AGG - Chr6:39713647-39713666 None:intergenic 15.0%
!! CTAACAATAAAATTTATTGT+CGG - Chr6:39713802-39713821 None:intergenic 15.0%
!! CTATGAAATAAAATAAAGAA+TGG - Chr6:39712087-39712106 None:intergenic 15.0%
!! TAAAAATAAATTCAAAGTTG+TGG + Chr6:39712802-39712821 MsG0680032380.01.T01:intron 15.0%
!! TTAATTCTAATAATAAAGTG+TGG + Chr6:39711680-39711699 MsG0680032380.01.T01:intron 15.0%
!!! TAAAATTATAAGTTGATATG+TGG - Chr6:39714674-39714693 None:intergenic 15.0%
!!! TCTTTATTTTATTTCATAGA+TGG + Chr6:39712088-39712107 MsG0680032380.01.T01:intron 15.0%
!! AAGTGAACTAAAAGTTAATA+AGG + Chr6:39713968-39713987 MsG0680032380.01.T01:intron 20.0%
!! ATATAACTAAAAATGTGTGA+TGG + Chr6:39714995-39715014 MsG0680032380.01.T01:three_prime_UTR 20.0%
!! TAAAATACAATAAAGCAAAG+TGG - Chr6:39711956-39711975 None:intergenic 20.0%
!! TGAAACAACTATTAGAAAAA+TGG - Chr6:39713887-39713906 None:intergenic 20.0%
!! TGAGTAAATCATTAACAAAT+TGG + Chr6:39711715-39711734 MsG0680032380.01.T01:intron 20.0%
!! TTATATCAACATTATTAACC+AGG - Chr6:39712505-39712524 None:intergenic 20.0%
!!! ACATTTTCAATTTGAAGTAT+CGG + Chr6:39712885-39712904 MsG0680032380.01.T01:intron 20.0%
!!! AGATTTTTATTTTATCAGCA+TGG - Chr6:39711511-39711530 None:intergenic 20.0%
!!! ATTTTTCTTCTTCTTGTTTT+TGG + Chr6:39712929-39712948 MsG0680032380.01.T01:intron 20.0%
!!! CAAAAGGATATAAAGAATTT+TGG + Chr6:39713197-39713216 MsG0680032380.01.T01:CDS 20.0%
!!! TAATTCCATTAGTAATGTTT+TGG + Chr6:39711599-39711618 MsG0680032380.01.T01:intron 20.0%
! AAGACATTTGAATTGTTGAA+AGG + Chr6:39710967-39710986 MsG0680032380.01.T01:CDS 25.0%
! ACTAAATCACATAAAGCAAA+AGG - Chr6:39711885-39711904 None:intergenic 25.0%
! ACTGTCATGATTTGATATAA+AGG - Chr6:39712728-39712747 None:intergenic 25.0%
! AGACATTTGAATTGTTGAAA+GGG + Chr6:39710968-39710987 MsG0680032380.01.T01:CDS 25.0%
! CTAAATCACATAAAGCAAAA+GGG - Chr6:39711884-39711903 None:intergenic 25.0%
! TAGAGAAAAAAATCCAAATC+AGG - Chr6:39713829-39713848 None:intergenic 25.0%
! TGTGTAGTATTAGAATGAAT+GGG - Chr6:39714550-39714569 None:intergenic 25.0%
! TTCATATGTCTCTTCAATTT+CGG + Chr6:39713994-39714013 MsG0680032380.01.T01:intron 25.0%
! TTGTGTAGTATTAGAATGAA+TGG - Chr6:39714551-39714570 None:intergenic 25.0%
! TTTCTACTTATCAATGATAC+AGG + Chr6:39713474-39713493 MsG0680032380.01.T01:intron 25.0%
!! AAACTACCTTTGACTTATTA+AGG - Chr6:39711343-39711362 None:intergenic 25.0%
!! AAGTATTTTCTATTACAGAG+AGG - Chr6:39712310-39712329 None:intergenic 25.0%
!! AGCATAAACTTTTCTTATAC+CGG - Chr6:39711439-39711458 None:intergenic 25.0%
!! CAGATGATTGTTAGTTTATT+TGG + Chr6:39711558-39711577 MsG0680032380.01.T01:intron 25.0%
!! TATGCTTTGCATATTTTACT+AGG + Chr6:39713141-39713160 MsG0680032380.01.T01:intron 25.0%
!! TCTTGTGTTTTTCTATTCAT+TGG + Chr6:39711528-39711547 MsG0680032380.01.T01:intron 25.0%
!! TTGCATATTTTACTAGGAAA+TGG + Chr6:39713147-39713166 MsG0680032380.01.T01:intron 25.0%
!!! ATAGTTTGCTTGATTTTATG+TGG + Chr6:39713848-39713867 MsG0680032380.01.T01:intron 25.0%
!!! CCTTGAATTATTTTGAGATT+CGG + Chr6:39714645-39714664 MsG0680032380.01.T01:intron 25.0%
!!! GCTTTTTCTTTTCACTTTTA+TGG + Chr6:39714387-39714406 MsG0680032380.01.T01:intron 25.0%
!!! GTGAAACATCATTTTAATTC+CGG + Chr6:39711404-39711423 MsG0680032380.01.T01:intron 25.0%
!!! TTGAGACATAAACTTGTTAA+TGG + Chr6:39713692-39713711 MsG0680032380.01.T01:intron 25.0%
AAATGGAGTTCAAATATCCT+CGG + Chr6:39714131-39714150 MsG0680032380.01.T01:intron 30.0%
AATCCCAAAATCCAAATGAA+AGG - Chr6:39715067-39715086 None:intergenic 30.0%
ACAATATGGTAACATCATGA+TGG + Chr6:39713307-39713326 MsG0680032380.01.T01:CDS 30.0%
ACACATACATAATTGCGAAA+AGG + Chr6:39712365-39712384 MsG0680032380.01.T01:intron 30.0%
ACGAAGTTGACAAAAAGAAA+TGG - Chr6:39714591-39714610 None:intergenic 30.0%
ACTTATGTGCTTGAAATTTG+AGG - Chr6:39713952-39713971 None:intergenic 30.0%
AGCAATTATGCCAATAAAGT+AGG - Chr6:39714900-39714919 None:intergenic 30.0%
AGTTTCTGTCTATCAATATG+AGG - Chr6:39712270-39712289 None:intergenic 30.0%
ATAAAGTAGGCTTCTTTAAC+TGG - Chr6:39714887-39714906 None:intergenic 30.0%
ATCCCAAAATCCAAATGAAA+GGG - Chr6:39715066-39715085 None:intergenic 30.0%
CAATAGTGTTTGGTATTGTT+TGG - Chr6:39712235-39712254 None:intergenic 30.0%
CCAAACCAAAACATTACTAA+TGG - Chr6:39711607-39711626 None:intergenic 30.0%
CCGAATCTCAAAATAATTCA+AGG - Chr6:39714648-39714667 None:intergenic 30.0%
CTATCAACGAAGATATTTCA+GGG - Chr6:39712989-39713008 None:intergenic 30.0%
CTTATGTGCTTGAAATTTGA+GGG - Chr6:39713951-39713970 None:intergenic 30.0%
GATCATTTCTTTCTGTGAAA+TGG + Chr6:39713540-39713559 MsG0680032380.01.T01:CDS 30.0%
GATCTATTGTCATGTTATCA+TGG - Chr6:39712627-39712646 None:intergenic 30.0%
GTTAAAGAAGCCTACTTTAT+TGG + Chr6:39714887-39714906 MsG0680032380.01.T01:CDS 30.0%
TAAAAGTTTATGCTCGCAAA+AGG + Chr6:39713181-39713200 MsG0680032380.01.T01:CDS 30.0%
TAGAAAGAGACAAAGAAAAC+AGG + Chr6:39712674-39712693 MsG0680032380.01.T01:intron 30.0%
TATTGTTAGAGATCCTGATT+TGG + Chr6:39713813-39713832 MsG0680032380.01.T01:intron 30.0%
TGTATGAGCAATTCATTTAC+CGG - Chr6:39713616-39713635 None:intergenic 30.0%
TGTCACAATGATCTACAATA+TGG + Chr6:39713293-39713312 MsG0680032380.01.T01:CDS 30.0%
TGTGTTCCTTAATAAGTCAA+AGG + Chr6:39711334-39711353 MsG0680032380.01.T01:intron 30.0%
TTACTCTTGAGTAACTGAAA+AGG - Chr6:39712785-39712804 None:intergenic 30.0%
TTCAAAATAGATACACAGCA+GGG - Chr6:39714520-39714539 None:intergenic 30.0%
! AATGACAAATCAGGTTTTTG+AGG + Chr6:39711098-39711117 MsG0680032380.01.T01:CDS 30.0%
! AGAACCAAAGAAAAGCTTTT+TGG - Chr6:39711908-39711927 None:intergenic 30.0%
! ATTTGTCATTGCACCTTTTA+AGG - Chr6:39711088-39711107 None:intergenic 30.0%
! TAAAGAGTGCATAAACATCT+TGG - Chr6:39714201-39714220 None:intergenic 30.0%
! TACAATTGACTTTGACTACA+AGG + Chr6:39714833-39714852 MsG0680032380.01.T01:CDS 30.0%
! TAGTCCAAAAAGCTTTTCTT+TGG + Chr6:39711901-39711920 MsG0680032380.01.T01:intron 30.0%
! TATACATACTTGAGTTCTGA+AGG + Chr6:39713749-39713768 MsG0680032380.01.T01:intron 30.0%
! TATTTTCTATTACAGAGAGG+AGG - Chr6:39712307-39712326 None:intergenic 30.0%
! TCTTGCAAACCATCTATTTT+GGG + Chr6:39714340-39714359 MsG0680032380.01.T01:intron 30.0%
! TTTAATTGTAACTTGTACGC+AGG + Chr6:39714260-39714279 MsG0680032380.01.T01:intron 30.0%
! TTTGTCATTGCACCTTTTAA+GGG - Chr6:39711087-39711106 None:intergenic 30.0%
!! GAAAAATGCTTAGCTTTGAA+AGG + Chr6:39712043-39712062 MsG0680032380.01.T01:intron 30.0%
!!! CCATTAGTAATGTTTTGGTT+TGG + Chr6:39711604-39711623 MsG0680032380.01.T01:intron 30.0%
!!! GGATATAAAGAATTTTGGCT+TGG + Chr6:39713202-39713221 MsG0680032380.01.T01:CDS 30.0%
AAAGTGATGGTCATGTTAGA+AGG + Chr6:39711136-39711155 MsG0680032380.01.T01:CDS 35.0%
AAGTGATGGTCATGTTAGAA+GGG + Chr6:39711137-39711156 MsG0680032380.01.T01:CDS 35.0%
ACTGAAAAGGAACATGAACT+TGG - Chr6:39712772-39712791 None:intergenic 35.0%
AGTTCAAATATCCTCGGAAA+CGG + Chr6:39714137-39714156 MsG0680032380.01.T01:intron 35.0%
ATGATGTTAATCACATACCC+GGG - Chr6:39711310-39711329 None:intergenic 35.0%
ATGTTGAGTTAAGTATGCTG+CGG + Chr6:39713234-39713253 MsG0680032380.01.T01:CDS 35.0%
CAGTGATGATTACATTAGAG+TGG + Chr6:39711803-39711822 MsG0680032380.01.T01:intron 35.0%
CATTTCTTTCTGTGAAATGG+CGG + Chr6:39713543-39713562 MsG0680032380.01.T01:CDS 35.0%
CTCAAAATAATTCAAGGCTC+AGG - Chr6:39714642-39714661 None:intergenic 35.0%
CTTGACTACAGTAAATATCC+CGG + Chr6:39713594-39713613 MsG0680032380.01.T01:CDS 35.0%
CTTTGTAATCCCCTTTCATT+TGG + Chr6:39715053-39715072 MsG0680032380.01.T01:three_prime_UTR 35.0%
GACCTTGTAACTTCAACAAA+TGG + Chr6:39714114-39714133 MsG0680032380.01.T01:intron 35.0%
GATGATGTTAATCACATACC+CGG - Chr6:39711311-39711330 None:intergenic 35.0%
GCTATCAACGAAGATATTTC+AGG - Chr6:39712990-39713009 None:intergenic 35.0%
GTATGAGCAATTCATTTACC+GGG - Chr6:39713615-39713634 None:intergenic 35.0%
GTTCAAAATAGATACACAGC+AGG - Chr6:39714521-39714540 None:intergenic 35.0%
TCCCAAAATCCAAATGAAAG+GGG - Chr6:39715065-39715084 None:intergenic 35.0%
TCGACATACACTCAAATGTT+TGG - Chr6:39711221-39711240 None:intergenic 35.0%
TCGGATGAAAATCAAGAGAT+TGG + Chr6:39713266-39713285 MsG0680032380.01.T01:CDS 35.0%
TTAATTCCGGTACAAGATTC+CGG + Chr6:39711417-39711436 MsG0680032380.01.T01:intron 35.0%
TTACATTAGAGTGGTTTCTG+TGG + Chr6:39711812-39711831 MsG0680032380.01.T01:intron 35.0%
TTACTGTAGTCAAGAACATG+AGG - Chr6:39713588-39713607 None:intergenic 35.0%
TTCCACAACTCAATAGTGTT+TGG - Chr6:39712245-39712264 None:intergenic 35.0%
TTTCACAATCTTCATATGCC+TGG + Chr6:39713026-39713045 MsG0680032380.01.T01:CDS 35.0%
TTTGAGTGTATGTCGAAGAA+TGG + Chr6:39711225-39711244 MsG0680032380.01.T01:CDS 35.0%
! AAAAGGTGCAATGACAAATC+AGG + Chr6:39711089-39711108 MsG0680032380.01.T01:CDS 35.0%
! AAACACTATTGAGTTGTGGA+AGG + Chr6:39712244-39712263 MsG0680032380.01.T01:intron 35.0%
! AGTTGAGGTTTTCTTCGATA+GGG + Chr6:39711185-39711204 MsG0680032380.01.T01:CDS 35.0%
! ATCCCCTTTCATTTGGATTT+TGG + Chr6:39715060-39715079 MsG0680032380.01.T01:three_prime_UTR 35.0%
! CTCCATTTGTTGAAGTTACA+AGG - Chr6:39714119-39714138 None:intergenic 35.0%
! CTCTTGCAAACCATCTATTT+TGG + Chr6:39714339-39714358 MsG0680032380.01.T01:intron 35.0%
! CTTGCAAACCATCTATTTTG+GGG + Chr6:39714341-39714360 MsG0680032380.01.T01:intron 35.0%
! TACCAAACACTATTGAGTTG+TGG + Chr6:39712240-39712259 MsG0680032380.01.T01:intron 35.0%
! TCCCCTTTCATTTGGATTTT+GGG + Chr6:39715061-39715080 MsG0680032380.01.T01:three_prime_UTR 35.0%
! TTGATTGGGCATAAGCTTTT+GGG - Chr6:39712474-39712493 None:intergenic 35.0%
!!! AGGGTTTTGGTTCGATTATA+TGG + Chr6:39711156-39711175 MsG0680032380.01.T01:CDS 35.0%
!!! ATCAGGTTTTTGAGGTGAAT+TGG + Chr6:39711106-39711125 MsG0680032380.01.T01:CDS 35.0%
!!! TGGATTTTGGGATTGAGTTA+AGG + Chr6:39715073-39715092 MsG0680032380.01.T01:three_prime_UTR 35.0%
AACCAGGAGAAAGACTTGAT+TGG - Chr6:39712489-39712508 None:intergenic 40.0%
AATGAAAGTTCTTGCAGCTG+TGG + Chr6:39711011-39711030 MsG0680032380.01.T01:CDS 40.0%
ACCAGGAGAAAGACTTGATT+GGG - Chr6:39712488-39712507 None:intergenic 40.0%
ATGAGATTACCTCCGATAGA+AGG + Chr6:39711481-39711500 MsG0680032380.01.T01:intron 40.0%
ATTAGAGTGGTTTCTGTGGA+TGG + Chr6:39711816-39711835 MsG0680032380.01.T01:intron 40.0%
ATTATATGGCGAAGGAGTTG+AGG + Chr6:39711170-39711189 MsG0680032380.01.T01:CDS 40.0%
CACAGAAAGAAATGATCGCA+AGG - Chr6:39713537-39713556 None:intergenic 40.0%
CATAACTCTGCAACACACAA+AGG - Chr6:39714809-39714828 None:intergenic 40.0%
CTTATACCGGAATCTTGTAC+CGG - Chr6:39711426-39711445 None:intergenic 40.0%
CTTGAAATTTGAGGGTGACA+GGG - Chr6:39713943-39713962 None:intergenic 40.0%
GAATAGACGAATGCTAGCTA+AGG - Chr6:39714057-39714076 None:intergenic 40.0%
GCGTGAATTTGTCAGTGAAA+TGG - Chr6:39713780-39713799 None:intergenic 40.0%
GTCAGCTAAATGCATGTGTT+CGG + Chr6:39714430-39714449 MsG0680032380.01.T01:intron 40.0%
GTTGAGGTGAATCCCTTAAA+AGG + Chr6:39711072-39711091 MsG0680032380.01.T01:CDS 40.0%
TAATGGTCAACCAGATCTTG+AGG + Chr6:39713709-39713728 MsG0680032380.01.T01:intron 40.0%
TGTATGTCGAAGAATGGACA+GGG + Chr6:39711231-39711250 MsG0680032380.01.T01:CDS 40.0%
TGTTGAGTTAAGTATGCTGC+GGG + Chr6:39713235-39713254 MsG0680032380.01.T01:CDS 40.0%
TTAGAGTGGTTTCTGTGGAT+GGG + Chr6:39711817-39711836 MsG0680032380.01.T01:intron 40.0%
TTGAAGAGTTCATTCATGCC+CGG + Chr6:39711289-39711308 MsG0680032380.01.T01:CDS 40.0%
TTGACTACAAGGAGTTCTCA+AGG + Chr6:39714844-39714863 MsG0680032380.01.T01:CDS 40.0%
! CTTGATTGGGCATAAGCTTT+TGG - Chr6:39712475-39712494 None:intergenic 40.0%
! GAGTTGAGGTTTTCTTCGAT+AGG + Chr6:39711184-39711203 MsG0680032380.01.T01:CDS 40.0%
! TGATGATGTGAGTACTGTTG+AGG + Chr6:39711056-39711075 MsG0680032380.01.T01:CDS 40.0%
! TGGTCATGTTAGAAGGGTTT+TGG + Chr6:39711143-39711162 MsG0680032380.01.T01:CDS 40.0%
! TTGGTTCGATTATATGGCGA+AGG + Chr6:39711162-39711181 MsG0680032380.01.T01:CDS 40.0%
!! ACATGACCATCACTTTTCGT+CGG - Chr6:39711132-39711151 None:intergenic 40.0%
!!! TGGTTTGGTTTTTCGATGTG+TGG + Chr6:39711619-39711638 MsG0680032380.01.T01:intron 40.0%
AAAGCCAAGTGATGCTGAAG+TGG + Chr6:39714286-39714305 MsG0680032380.01.T01:intron 45.0%
AATTGGCCGACGAAAAGTGA+TGG + Chr6:39711123-39711142 MsG0680032380.01.T01:CDS 45.0%
ACGAAGATATTTCAGGGTCG+CGG - Chr6:39712983-39713002 None:intergenic 45.0%
AGACGAATGCTAGCTAAGGA+AGG - Chr6:39714053-39714072 None:intergenic 45.0%
ATCGCAAGGTCAAATGCAAC+TGG - Chr6:39713523-39713542 None:intergenic 45.0%
CTCAGATTTGGCAGAGAATG+AGG + Chr6:39713060-39713079 MsG0680032380.01.T01:CDS 45.0%
GCTTGAAATTTGAGGGTGAC+AGG - Chr6:39713944-39713963 None:intergenic 45.0%
GGATCAGTTAGCGAATCTTG+TGG + Chr6:39714307-39714326 MsG0680032380.01.T01:intron 45.0%
GTGCAAAGAAGGCTCAGATT+TGG + Chr6:39713048-39713067 MsG0680032380.01.T01:CDS 45.0%
GTGTATGTCGAAGAATGGAC+AGG + Chr6:39711230-39711249 MsG0680032380.01.T01:CDS 45.0%
TCATATGCCTGGTGCAAAGA+AGG + Chr6:39713037-39713056 MsG0680032380.01.T01:CDS 45.0%
TCCTCGGAAACGGTTGAAAA+TGG + Chr6:39714147-39714166 MsG0680032380.01.T01:intron 45.0%
TCGCAAGGTCAAATGCAACT+GGG - Chr6:39713522-39713541 None:intergenic 45.0%
TGAAGAGTTCATTCATGCCC+GGG + Chr6:39711290-39711309 MsG0680032380.01.T01:CDS 45.0%
TGATCCACTTCAGCATCACT+TGG - Chr6:39714293-39714312 None:intergenic 45.0%
! AAGCTTTTGGGCACATGACT+TGG - Chr6:39712462-39712481 None:intergenic 45.0%
! AGCTTTTGGGCACATGACTT+GGG - Chr6:39712461-39712480 None:intergenic 45.0%
! TATGCTGCGGGCATTGTTAT+CGG + Chr6:39713247-39713266 MsG0680032380.01.T01:CDS 45.0%
!! GCTTAGCTTTGAAAGGCTTC+TGG + Chr6:39712050-39712069 MsG0680032380.01.T01:intron 45.0%
!!! ACCATCTATTTTGGGGCTTG+TGG + Chr6:39714348-39714367 MsG0680032380.01.T01:intron 45.0%
!!! CATCTATTTTGGGGCTTGTG+GGG + Chr6:39714350-39714369 MsG0680032380.01.T01:intron 45.0%
!!! CCATCTATTTTGGGGCTTGT+GGG + Chr6:39714349-39714368 MsG0680032380.01.T01:intron 45.0%
!!! AAAAAATAGAAAATATATTT+TGG + Chr6:39711741-39711760 MsG0680032380.01.T01:intron 5.0%
AAGATATTTCAGGGTCGCGG+AGG - Chr6:39712980-39712999 None:intergenic 50.0%
ACAAGGAGTTCTCAAGGCAG+AGG + Chr6:39714850-39714869 MsG0680032380.01.T01:CDS 50.0%
ATCTGAGCCTTCTTTGCACC+AGG - Chr6:39713047-39713066 None:intergenic 50.0%
CAGCATGGATCGCCTTCTAT+CGG - Chr6:39711496-39711515 None:intergenic 50.0%
CAGTAGTGAACCGACCAAGA+AGG - Chr6:39711263-39711282 None:intergenic 50.0%
CCCACAAGCCCCAAAATAGA+TGG - Chr6:39714352-39714371 None:intergenic 50.0%
GCAGCTGTGGCTGTAGATTT+AGG + Chr6:39711024-39711043 MsG0680032380.01.T01:CDS 50.0%
GCCCAATCAAGTCTTTCTCC+TGG + Chr6:39712484-39712503 MsG0680032380.01.T01:intron 50.0%
GTCAAGAACATGAGGCGTGT+CGG - Chr6:39713580-39713599 None:intergenic 50.0%
TCAAGAACATGAGGCGTGTC+GGG - Chr6:39713579-39713598 None:intergenic 50.0%
! CTTCTTGGTCGGTTCACTAC+TGG + Chr6:39711261-39711280 MsG0680032380.01.T01:CDS 50.0%
! GTCTAGAGTCTGACAACGAC+TGG - Chr6:39712865-39712884 None:intergenic 50.0%
!! GCCATTTTCAACCGTTTCCG+AGG - Chr6:39714151-39714170 None:intergenic 50.0%
CATGGATCGCCTTCTATCGG+AGG - Chr6:39711493-39711512 None:intergenic 55.0%
CTTCGACGCTCCTCAAGATC+TGG - Chr6:39713722-39713741 None:intergenic 55.0%
!! CAGATCTTGAGGAGCGTCGA+AGG + Chr6:39713720-39713739 MsG0680032380.01.T01:intron 55.0%
AGAACATGAGGCGTGTCGGG+TGG - Chr6:39713576-39713595 None:intergenic 60.0%
GTGAACCGACCAAGAAGGCG+CGG - Chr6:39711258-39711277 None:intergenic 60.0%
AGGGTCCGCGCCTTCTTGGT+CGG + Chr6:39711250-39711269 MsG0680032380.01.T01:CDS 65.0%
GGACAGGGTCCGCGCCTTCT+TGG + Chr6:39711246-39711265 MsG0680032380.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 39710946 39715132 39710946 ID=MsG0680032380.01;Name=MsG0680032380.01
Chr6 mRNA 39710946 39715132 39710946 ID=MsG0680032380.01.T01;Parent=MsG0680032380.01;Name=MsG0680032380.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.75|0.8|1|1|1|5|218|298
Chr6 exon 39710946 39711311 39710946 ID=MsG0680032380.01.T01:exon:21605;Parent=MsG0680032380.01.T01
Chr6 exon 39712960 39713081 39712960 ID=MsG0680032380.01.T01:exon:21606;Parent=MsG0680032380.01.T01
Chr6 exon 39713163 39713358 39713163 ID=MsG0680032380.01.T01:exon:21607;Parent=MsG0680032380.01.T01
Chr6 exon 39713496 39713615 39713496 ID=MsG0680032380.01.T01:exon:21608;Parent=MsG0680032380.01.T01
Chr6 exon 39714822 39715132 39714822 ID=MsG0680032380.01.T01:exon:21609;Parent=MsG0680032380.01.T01
Chr6 CDS 39710946 39711311 39710946 ID=MsG0680032380.01.T01:cds;Parent=MsG0680032380.01.T01
Chr6 CDS 39712960 39713081 39712960 ID=MsG0680032380.01.T01:cds;Parent=MsG0680032380.01.T01
Chr6 CDS 39713163 39713358 39713163 ID=MsG0680032380.01.T01:cds;Parent=MsG0680032380.01.T01
Chr6 CDS 39713496 39713615 39713496 ID=MsG0680032380.01.T01:cds;Parent=MsG0680032380.01.T01
Chr6 CDS 39714822 39714914 39714822 ID=MsG0680032380.01.T01:cds;Parent=MsG0680032380.01.T01
Chr6 three_prime_UTR 39714915 39715132 39714915 ID=MsG0680032380.01.T01:three_prime_utr;Parent=MsG0680032380.01.T01
Gene Sequence

>MsG0680032380.01.T01

ATGCAGAAAGTGATGGCTTTAAAGACATTTGAATTGTTGAAAGGGTGTGAAACTCATGAAGAGATAATGAAAGTTCTTGCAGCTGTGGCTGTAGATTTAGGTGATGTAATTGATGATGTGAGTACTGTTGAGGTGAATCCCTTAAAAGGTGCAATGACAAATCAGGTTTTTGAGGTGAATTGGCCGACGAAAAGTGATGGTCATGTTAGAAGGGTTTTGGTTCGATTATATGGCGAAGGAGTTGAGGTTTTCTTCGATAGGGATGATGAAATCCAAACATTTGAGTGTATGTCGAAGAATGGACAGGGTCCGCGCCTTCTTGGTCGGTTCACTACTGGTCGAGTTGAAGAGTTCATTCATGCCCGGACACTTTCAGCTTCTGACCTCCGCGACCCTGAAATATCTTCGTTGATAGCATCGAAGATGAAAGAATTTCACAATCTTCATATGCCTGGTGCAAAGAAGGCTCAGATTTGGCAGAGAATGAGGAAATGGCTTAATCATGCTAAAAGTTTATGCTCGCAAAAGGATATAAAGAATTTTGGCTTGGAGAATCTAGATGTTGAGTTAAGTATGCTGCGGGCATTGTTATCGGATGAAAATCAAGAGATTGGTTTTTGTCACAATGATCTACAATATGGTAACATCATGATGGATGAAGAAACAAGATCAATCACTTTAATTGACTACGAGTACTCGAGTTACAACCCAGTTGCATTTGACCTTGCGATCATTTCTTTCTGTGAAATGGCGGCAAATTACCACCCGACACGCCTCATGTTCTTGACTACAGTAAATATCCCGAGTTATGTCAATACAATTGACTTTGACTACAAGGAGTTCTCAAGGCAGAGGTTTAAGCAATACCAGTTAAAGAAGCCTACTTTATTGGCATAA
Protein sequence

>MsG0680032380.01.T01

MQKVMALKTFELLKGCETHEEIMKVLAAVAVDLGDVIDDVSTVEVNPLKGAMTNQVFEVNWPTKSDGHVRRVLVRLYGEGVEVFFDRDDEIQTFECMSKNGQGPRLLGRFTTGRVEEFIHARTLSASDLRDPEISSLIASKMKEFHNLHMPGAKKAQIWQRMRKWLNHAKSLCSQKDIKNFGLENLDVELSMLRALLSDENQEIGFCHNDLQYGNIMMDEETRSITLIDYEYSSYNPVAFDLAIISFCEMAANYHPTRLMFLTTVNIPSYVNTIDFDYKEFSRQRFKQYQLKKPTLLA*