AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032641.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032641.01.T01 MTR_6g045467 79.853 273 35 3 1 273 1 253 1.89e-142 418
MsG0680032641.01.T01 MTR_6g045467 58.306 307 78 7 251 541 138 410 2.64e-99 307
MsG0680032641.01.T01 MTR_6g045467 79.853 273 35 3 1 273 1 253 3.99e-142 419
MsG0680032641.01.T01 MTR_6g045467 57.807 301 77 7 253 537 140 406 1.22e-94 296
MsG0680032641.01.T01 MTR_6g045467 79.853 273 35 3 1 273 1 253 5.42e-142 418
MsG0680032641.01.T01 MTR_6g045467 57.807 301 77 7 253 537 140 406 1.88e-94 296
MsG0680032641.01.T01 MTR_4g117360 73.646 277 49 4 1 273 1 257 1.34e-131 393
MsG0680032641.01.T01 MTR_4g117360 81.921 177 32 0 361 537 250 426 1.56e-91 290
MsG0680032641.01.T01 MTR_7g010900 59.058 276 89 3 1 272 1 256 1.37e-97 305
MsG0680032641.01.T01 MTR_7g010900 66.111 180 56 1 361 540 250 424 1.86e-72 239
MsG0680032641.01.T01 MTR_6g045467 94.156 154 9 0 120 273 1 154 4.74e-96 297
MsG0680032641.01.T01 MTR_6g045467 57.807 301 77 7 253 537 41 307 1.88e-95 295
MsG0680032641.01.T01 MTR_6g045467 94.156 154 9 0 120 273 1 154 7.18e-96 296
MsG0680032641.01.T01 MTR_6g045467 57.807 301 77 7 253 537 41 307 3.30e-95 295
MsG0680032641.01.T01 MTR_6g045467 57.807 301 77 7 253 537 38 304 3.04e-95 295
MsG0680032641.01.T01 MTR_6g045467 93.377 151 10 0 123 273 1 151 5.81e-93 289
MsG0680032641.01.T01 MTR_7g094620 59.756 246 79 2 22 267 26 251 2.10e-89 283
MsG0680032641.01.T01 MTR_7g094620 53.684 190 70 6 361 537 250 434 1.75e-46 170
MsG0680032641.01.T01 MTR_4g092610 54.148 229 84 3 37 264 18 226 5.51e-73 239
MsG0680032641.01.T01 MTR_4g092610 43.979 191 88 3 360 537 227 411 4.26e-37 142
MsG0680032641.01.T01 MTR_2g010520 53.275 229 86 4 37 264 18 226 5.80e-70 226
MsG0680032641.01.T01 MTR_2g010520 52.838 229 87 3 37 264 18 226 1.44e-69 227
MsG0680032641.01.T01 MTR_2g010520 60.000 85 34 0 360 444 227 311 2.79e-28 115
MsG0680032641.01.T01 MTR_2g010520 52.838 229 87 3 37 264 18 226 1.21e-68 228
MsG0680032641.01.T01 MTR_2g010520 42.162 185 92 3 366 537 233 415 7.77e-30 122
MsG0680032641.01.T01 MTR_3g111830 47.280 239 104 5 27 264 9 226 8.02e-62 211
MsG0680032641.01.T01 MTR_3g111830 34.673 199 99 4 361 537 228 417 1.46e-24 107
MsG0680032641.01.T01 MTR_6g051860 42.623 244 118 4 31 273 81 303 1.06e-54 191
MsG0680032641.01.T01 MTR_6g051860 57.500 80 34 0 361 440 296 375 1.13e-25 110
MsG0680032641.01.T01 MTR_6g052300 41.532 248 123 4 27 273 15 241 1.38e-51 184
MsG0680032641.01.T01 MTR_6g052300 40.426 188 87 4 363 537 236 411 4.29e-30 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032641.01.T01 AT4G14240 68.651 252 59 3 22 273 26 257 1.18e-110 339
MsG0680032641.01.T01 AT4G14240 62.778 180 54 4 361 537 250 419 7.10e-53 187
MsG0680032641.01.T01 AT4G14240 66.667 252 55 2 22 273 26 248 1.11e-106 328
MsG0680032641.01.T01 AT4G14240 62.778 180 54 4 361 537 241 410 5.28e-53 187
MsG0680032641.01.T01 AT4G14230 65.625 256 68 2 18 273 21 256 1.31e-105 326
MsG0680032641.01.T01 AT4G14230 57.303 178 71 1 360 537 248 420 2.88e-53 189
MsG0680032641.01.T01 AT1G03270 62.846 253 74 2 13 265 15 247 4.59e-102 317
MsG0680032641.01.T01 AT1G03270 58.011 181 69 3 361 537 248 425 2.43e-47 172
MsG0680032641.01.T01 AT4G14240 81.457 151 28 0 123 273 3 153 1.12e-82 263
MsG0680032641.01.T01 AT4G14240 62.778 180 54 4 361 537 146 315 2.62e-53 186
MsG0680032641.01.T01 AT4G33700 50.000 238 98 3 28 264 9 226 2.33e-69 225
MsG0680032641.01.T01 AT4G33700 60.000 55 22 0 360 414 227 281 6.20e-15 75.9
MsG0680032641.01.T01 AT4G33700 50.000 238 98 3 28 264 9 226 5.99e-68 226
MsG0680032641.01.T01 AT4G33700 42.932 191 89 4 360 537 227 410 7.04e-33 130
MsG0680032641.01.T01 AT5G52790 48.347 242 104 4 24 264 6 227 2.22e-67 223
MsG0680032641.01.T01 AT5G52790 42.308 182 78 4 360 540 228 383 1.22e-31 126
MsG0680032641.01.T01 AT5G52790 48.347 242 104 4 24 264 6 227 2.22e-67 223
MsG0680032641.01.T01 AT5G52790 42.308 182 78 4 360 540 228 383 1.22e-31 126
MsG0680032641.01.T01 AT5G52790 48.347 242 104 4 24 264 6 227 5.84e-67 223
MsG0680032641.01.T01 AT5G52790 40.099 202 85 5 360 551 228 403 2.84e-31 126
MsG0680032641.01.T01 AT2G14520 49.153 236 99 3 30 264 11 226 1.09e-66 223
MsG0680032641.01.T01 AT2G14520 35.036 274 144 9 290 537 144 409 3.80e-30 123
MsG0680032641.01.T01 AT2G14520 49.153 236 99 3 30 264 11 226 1.09e-66 223
MsG0680032641.01.T01 AT2G14520 35.036 274 144 9 290 537 144 409 3.80e-30 123
MsG0680032641.01.T01 AT2G14520 49.153 236 99 3 30 264 11 226 1.25e-66 222
MsG0680032641.01.T01 AT2G14520 35.821 268 144 8 290 537 144 403 1.05e-31 127
MsG0680032641.01.T01 AT5G52790 50.424 236 93 6 31 264 14 227 2.04e-66 223
MsG0680032641.01.T01 AT5G52790 42.391 184 79 4 360 542 228 385 2.95e-31 127
MsG0680032641.01.T01 AT5G52790 50.638 235 94 5 31 264 14 227 3.17e-66 223
MsG0680032641.01.T01 AT5G52790 42.458 179 76 4 360 537 228 380 5.40e-30 124
MsG0680032641.01.T01 AT1G47330 48.760 242 103 5 24 264 5 226 1.75e-62 214
MsG0680032641.01.T01 AT1G47330 37.931 203 99 4 361 537 228 429 4.09e-30 124
MsG0680032641.01.T01 AT2G14520 60.140 143 56 1 123 264 1 143 1.29e-53 185
MsG0680032641.01.T01 AT2G14520 35.036 274 144 9 290 537 61 326 2.14e-30 122
MsG0680032641.01.T01 AT4G33700 59.441 143 57 1 123 264 1 143 9.15e-53 183
MsG0680032641.01.T01 AT4G33700 42.784 194 85 5 360 537 144 327 8.40e-33 129
MsG0680032641.01.T01 AT1G47330 57.343 143 60 1 123 264 3 145 9.95e-50 178
MsG0680032641.01.T01 AT1G47330 37.931 203 99 4 361 537 147 348 4.02e-30 123

Find 122 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCCCAGGAATATTAT+TGG 0.213736 6:+46601477 MsG0680032641.01.T01:CDS
CCATATGACTATTTCCCTTT+TGG 0.240744 6:-46601811 None:intergenic
CTGACAGGGGTCTCTGATTC+AGG 0.253158 6:-46601632 None:intergenic
TCAAAGAGTTAGGCAGGTTT+AGG 0.253729 6:-46599221 None:intergenic
GTCAAGCCTTCAAAGCTTAC+TGG 0.302358 6:+46601992 MsG0680032641.01.T01:CDS
AAAGCTCTTGTCTCCATTCA+TGG 0.311809 6:+46599760 MsG0680032641.01.T01:CDS
CAAAGAGTTAGGCAGGTTTA+GGG 0.340301 6:-46599220 None:intergenic
ACCAACGAAGGCATACCTTT+TGG 0.342222 6:+46597793 MsG0680032641.01.T01:CDS
CAGGTTCTGGATTGCGTACT+GGG 0.343310 6:+46599703 MsG0680032641.01.T01:intron
TCAGGTTCTGGATTGCGTAC+TGG 0.343532 6:+46599702 MsG0680032641.01.T01:intron
AAAATCCCAGGAATATTATT+GGG 0.347890 6:+46601478 MsG0680032641.01.T01:CDS
TAAAAGCCCAATAATATTCC+TGG 0.351419 6:-46601484 None:intergenic
TGCTCATGTGAGCACTTAGA+AGG 0.365360 6:-46601031 None:intergenic
GTAAAGAGTGATGACTTTGT+AGG 0.365446 6:-46601065 None:intergenic
TTATTGCCAGTAAGCTTTGA+AGG 0.366582 6:-46601998 None:intergenic
AATGGTCAACGCATTCAAAA+TGG 0.371245 6:-46597749 None:intergenic
AAAGAAAATGTTGATTCAAT+AGG 0.371631 6:-46600441 None:intergenic
TACTCCATTGCTACAAGAAC+TGG 0.375041 6:+46601937 MsG0680032641.01.T01:CDS
CTTGATTGAAGAGTTTATCT+AGG 0.383532 6:-46599290 None:intergenic
AAGAGTTTATCTAGGTATAG+AGG 0.389663 6:-46599282 None:intergenic
ATGTTACCCTCTTTCTTATC+CGG 0.389771 6:+46599562 MsG0680032641.01.T01:CDS
ATCTCAAATCAGGGAGGCAT+TGG 0.390658 6:+46601410 MsG0680032641.01.T01:intron
CCTTCTTACGAAAATATTCA+TGG 0.392818 6:+46602064 MsG0680032641.01.T01:CDS
AAAGAAACTATTGGGTTAAG+AGG 0.394857 6:-46597990 None:intergenic
CTCTTTGCCGGAGTCATGTC+CGG 0.396365 6:+46597862 MsG0680032641.01.T01:CDS
CAAGCAATTTGTAGTAGATA+TGG 0.402882 6:+46599488 MsG0680032641.01.T01:CDS
AGCAAGGTGGTTACTACTAA+TGG 0.406615 6:-46597767 None:intergenic
CCTAACTCTTTGACAGCCAT+TGG 0.410289 6:+46599231 MsG0680032641.01.T01:CDS
TTTAGATATGTGCATGCCCT+TGG 0.426790 6:+46602154 MsG0680032641.01.T01:CDS
TTTAGATGTTAATTCAAAGT+TGG 0.434582 6:+46600461 MsG0680032641.01.T01:CDS
GGAACGACGAGGCTTTATTT+AGG 0.438067 6:+46599725 MsG0680032641.01.T01:CDS
CACTACGTTCAAGAATTTCA+AGG 0.449665 6:-46597921 None:intergenic
ACTATTGGGTTAAGAGGAAG+AGG 0.454940 6:-46597984 None:intergenic
AATATTCATGGTGAAGTGAT+TGG 0.459543 6:+46602076 MsG0680032641.01.T01:CDS
TAGAGGAAGAGCCTGCATAT+TGG 0.465594 6:-46599265 None:intergenic
CCAAAAGGGAAATAGTCATA+TGG 0.467713 6:+46601811 MsG0680032641.01.T01:CDS
TTATACCTCCATGCCATGAA+TGG 0.470063 6:-46599773 None:intergenic
GTAGAATTTACCTTTCCAAC+CGG 0.473889 6:-46599581 None:intergenic
TACCCTCTTTCTTATCCGGT+TGG 0.476027 6:+46599566 MsG0680032641.01.T01:CDS
TAAAGAGTGATGACTTTGTA+GGG 0.476633 6:-46601064 None:intergenic
TATACTGAACGAGTTCCAAA+AGG 0.480137 6:+46601796 MsG0680032641.01.T01:CDS
CTTTCAAATGTCCAATATGC+AGG 0.481039 6:+46599254 MsG0680032641.01.T01:CDS
CGGATAGATACTGCACTGAC+AGG 0.486816 6:-46601647 None:intergenic
TCATCTAGTGGGTATTCATA+TGG 0.489386 6:-46600861 None:intergenic
CAGGAACTCGGCTGTGCCCA+CGG 0.490739 6:-46601446 None:intergenic
AGTGATTGGTATTATCACTT+TGG 0.495868 6:+46602090 MsG0680032641.01.T01:CDS
CCAATGGCTGTCAAAGAGTT+AGG 0.498242 6:-46599231 None:intergenic
CTGTCAGTGCAGTATCTATC+CGG 0.501210 6:+46601648 MsG0680032641.01.T01:CDS
GTCATGTCCGGTCTCACACT+TGG 0.509099 6:+46597874 MsG0680032641.01.T01:CDS
TGGCTGTCAAAGAGTTAGGC+AGG 0.511849 6:-46599227 None:intergenic
GTTGTGAAGACTACCGGAAA+AGG 0.512912 6:+46601839 MsG0680032641.01.T01:CDS
ATGTTAATTCAAAGTTGGAC+TGG 0.514990 6:+46600466 MsG0680032641.01.T01:CDS
TCTCAAATCAGGGAGGCATT+GGG 0.517004 6:+46601411 MsG0680032641.01.T01:intron
GAATCCAGTTCTTGTAGCAA+TGG 0.517698 6:-46601941 None:intergenic
CATGAGACCAAGTGTGAGAC+CGG 0.518128 6:-46597881 None:intergenic
TCCGACACCGACACGACAGC+GGG 0.520357 6:-46598200 None:intergenic
CTATCACAGGCACTCACCAC+TGG 0.525386 6:+46600957 MsG0680032641.01.T01:CDS
TTCTCTTCATCAATTAGTTG+CGG 0.525530 6:-46601872 None:intergenic
AGCACTTGATTTGACCGAAA+AGG 0.528383 6:+46599957 MsG0680032641.01.T01:CDS
AGGAACTCGGCTGTGCCCAC+GGG 0.532571 6:-46601445 None:intergenic
ACGCACAAGCCATGAAAAGT+TGG 0.534177 6:-46599525 None:intergenic
TCGTTCAGTATATCGTATAG+AGG 0.534507 6:-46601785 None:intergenic
AAAAGCCCAATAATATTCCT+GGG 0.537470 6:-46601483 None:intergenic
AAACACACCGTGGTATTCTC+CGG 0.544224 6:-46601667 None:intergenic
CACTTAGAAGGGATAATCCC+CGG 0.552433 6:-46601019 None:intergenic
CTGTCTATTCTCAAAATCCC+AGG 0.554478 6:+46601466 MsG0680032641.01.T01:CDS
TCTTTCTTATCCGGTTGGAA+AGG 0.558257 6:+46599571 MsG0680032641.01.T01:CDS
AGACATACACGTATGACGTA+TGG 0.559217 6:+46597724 None:intergenic
TGCCTTCGTTGGTGAGAGCA+AGG 0.559592 6:-46597783 None:intergenic
GTGGAACGGTGCTGTTCACA+AGG 0.562367 6:-46600839 None:intergenic
TCGTATAGAGGCATATCAGA+TGG 0.565213 6:-46601773 None:intergenic
TATCTACTACAAATTGCTTG+TGG 0.565273 6:-46599485 None:intergenic
AGCGGGACACGTCTAATTCG+AGG 0.566617 6:-46598183 None:intergenic
ATCCATGTTGCAGATCCAAA+AGG 0.568878 6:-46597808 None:intergenic
ATTGGACATTTGAAAGCCAA+TGG 0.570238 6:-46599247 None:intergenic
CTTGAAATTCTTGAACGTAG+TGG 0.572868 6:+46597922 MsG0680032641.01.T01:CDS
AGTAGATATGGTCTTGCTGT+AGG 0.575361 6:+46599500 MsG0680032641.01.T01:CDS
GACGTGTCCCGCTGTCGTGT+CGG 0.575758 6:+46598193 MsG0680032641.01.T01:CDS
TCCAAAAGGTATGCCTTCGT+TGG 0.579698 6:-46597794 None:intergenic
TTTCCAACCGGATAAGAAAG+AGG 0.579776 6:-46599569 None:intergenic
TTGGGAAAGATTCTTGCCCG+TGG 0.586262 6:+46601429 MsG0680032641.01.T01:CDS
GGTCGCAATGATCATGTAGC+GGG 0.587684 6:-46600793 None:intergenic
GGATAGATACTGCACTGACA+GGG 0.588476 6:-46601646 None:intergenic
GCTGCTGTTGTGAAGACTAC+CGG 0.588617 6:+46601833 MsG0680032641.01.T01:CDS
TGGGAAAGATTCTTGCCCGT+GGG 0.591293 6:+46601430 MsG0680032641.01.T01:CDS
GCTCATGTGAGCACTTAGAA+GGG 0.595117 6:-46601030 None:intergenic
ACTAGTTTGCAGAGTAGTGA+TGG 0.595827 6:+46602028 MsG0680032641.01.T01:CDS
ATACTGAACGAGTTCCAAAA+GGG 0.596540 6:+46601797 MsG0680032641.01.T01:CDS
GTGATGACTTTGTAGGGGCG+AGG 0.599614 6:-46601058 None:intergenic
AGTAGTGATGGCACATTAAG+CGG 0.599766 6:+46602040 MsG0680032641.01.T01:CDS
TCTTGTCTCCATTCATGGCA+TGG 0.603983 6:+46599765 MsG0680032641.01.T01:CDS
TGTGAGACCGGACATGACTC+CGG 0.604884 6:-46597869 None:intergenic
TCTAGTGGGTATTCATATGG+TGG 0.607994 6:-46600858 None:intergenic
CTACATGATCATTGCGACCA+TGG 0.614093 6:+46600797 MsG0680032641.01.T01:CDS
TGGTTGAAACGATCATCTAG+TGG 0.614262 6:-46600873 None:intergenic
CAACCATGGTAGAACTTGTG+AGG 0.615833 6:+46600890 MsG0680032641.01.T01:CDS
GCAACATGGATTGCTTACGC+TGG 0.623937 6:+46597820 MsG0680032641.01.T01:CDS
GTGAGACGGTACAGTTGACA+AGG 0.628306 6:-46600918 None:intergenic
GAACATGCTCAATCTATCAC+AGG 0.628872 6:+46600944 MsG0680032641.01.T01:CDS
TTCCAACCGGATAAGAAAGA+GGG 0.628963 6:-46599568 None:intergenic
TGGGTATTCATATGGTGGAA+CGG 0.629104 6:-46600853 None:intergenic
CTAGATGATCGTTTCAACCA+TGG 0.630004 6:+46600876 MsG0680032641.01.T01:CDS
CACCTTGCTCTCACCAACGA+AGG 0.637959 6:+46597781 MsG0680032641.01.T01:CDS
CGACCATGGTAGAACTTGTG+AGG 0.639182 6:+46600811 MsG0680032641.01.T01:CDS
GATGAGACAACAATTATCAG+TGG 0.641472 6:+46599934 MsG0680032641.01.T01:CDS
TGTCTCCATTCATGGCATGG+AGG 0.641880 6:+46599768 MsG0680032641.01.T01:CDS
TGAGCATGTTCGCAGTGAGA+CGG 0.649194 6:-46600932 None:intergenic
GGTTGAAACGATCATCTAGT+GGG 0.653260 6:-46600872 None:intergenic
TGGTCGCAATGATCATGTAG+CGG 0.654696 6:-46600794 None:intergenic
AGGTTCTGGATTGCGTACTG+GGG 0.664585 6:+46599704 MsG0680032641.01.T01:intron
GTCCGACACCGACACGACAG+CGG 0.669762 6:-46598201 None:intergenic
GATAGATACTGCACTGACAG+GGG 0.670187 6:-46601645 None:intergenic
ATGCCTCACAAGTTCTACCA+TGG 0.670318 6:-46600893 None:intergenic
TTTGAGAATAGACAGGAACT+CGG 0.672689 6:-46601458 None:intergenic
ATGCCTCACAAGTTCTACCA+TGG 0.672757 6:-46600814 None:intergenic
AAAGAGTGATGACTTTGTAG+GGG 0.686650 6:-46601063 None:intergenic
GAGGAACATGTTCGTACCAG+TGG 0.700834 6:-46600973 None:intergenic
CTTCGTTGGTGAGAGCAAGG+TGG 0.701135 6:-46597780 None:intergenic
TTGCGTACTGGGGAACGACG+AGG 0.706727 6:+46599714 MsG0680032641.01.T01:CDS
TATCTATCCGGAGAATACCA+CGG 0.709255 6:+46601660 MsG0680032641.01.T01:CDS
TGGAACGGTGCTGTTCACAA+GGG 0.726748 6:-46600838 None:intergenic
TGAGACGGTACAGTTGACAA+GGG 0.750902 6:-46600917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTAAAGAAACTATT+GGG - Chr6:46598001-46598020 None:intergenic 10.0%
!! AATAGTTTCTTTAATTATTT+AGG + Chr6:46598001-46598020 MsG0680032641.01.T01:intron 10.0%
!! ATATACCATTAAAAATAAAT+TGG - Chr6:46601741-46601760 None:intergenic 10.0%
!! TAAATAATTAAAGAAACTAT+TGG - Chr6:46598002-46598021 None:intergenic 10.0%
!! ATTAAGAAAACACAAAAATT+AGG - Chr6:46600020-46600039 None:intergenic 15.0%
!! TAATAGTATTATATGAAACA+CGG + Chr6:46598024-46598043 MsG0680032641.01.T01:intron 15.0%
!!! ATAAAAATCTTGTTTTGTAT+TGG - Chr6:46601144-46601163 None:intergenic 15.0%
!!! GTATTGTTTATAAGTTTTTA+AGG - Chr6:46598772-46598791 None:intergenic 15.0%
!!! TAAAAATCTTGTTTTGTATT+GGG - Chr6:46601143-46601162 None:intergenic 15.0%
!! AAAACATAGAAATTACTAGA+TGG - Chr6:46600386-46600405 None:intergenic 20.0%
!! AAATTTGTAGAAATTTGTAG+AGG - Chr6:46598946-46598965 None:intergenic 20.0%
!! AATTTGTAGAAATTTGTAGA+GGG - Chr6:46598945-46598964 None:intergenic 20.0%
!! ATCTAAAAAATTCAAACATC+CGG + Chr6:46601000-46601019 MsG0680032641.01.T01:CDS 20.0%
!! GAAAATTGTATCTTCATAAA+CGG + Chr6:46598730-46598749 MsG0680032641.01.T01:intron 20.0%
!! GACAAGTTATTATTATTAGT+TGG - Chr6:46599446-46599465 None:intergenic 20.0%
!! TTAACTAGTATCTTCTATTT+GGG + Chr6:46600114-46600133 MsG0680032641.01.T01:intron 20.0%
!! TTTAACTAGTATCTTCTATT+TGG + Chr6:46600113-46600132 MsG0680032641.01.T01:intron 20.0%
!! TTTAATGGTATATATTTGCA+GGG + Chr6:46601748-46601767 MsG0680032641.01.T01:intron 20.0%
!! TTTAGATGTTAATTCAAAGT+TGG + Chr6:46600461-46600480 MsG0680032641.01.T01:CDS 20.0%
!! TTTCAAATTATTTACTGTGT+CGG + Chr6:46598280-46598299 MsG0680032641.01.T01:intron 20.0%
!!! AAAGAAAATGTTGATTCAAT+AGG - Chr6:46600444-46600463 None:intergenic 20.0%
!!! CAACAATAAATATTTTCCAA+TGG - Chr6:46601272-46601291 None:intergenic 20.0%
!!! CAATTGATAGTATTAATACA+TGG - Chr6:46599003-46599022 None:intergenic 20.0%
!!! GATAAACATTGTTTTGTAAA+TGG - Chr6:46598919-46598938 None:intergenic 20.0%
!!! TTATGTTTTGTCATAGAAAT+AGG + Chr6:46598595-46598614 MsG0680032641.01.T01:intron 20.0%
!!! TTTTAATGGTATATATTTGC+AGG + Chr6:46601747-46601766 MsG0680032641.01.T01:intron 20.0%
!!! TTTTCAGGAAAATAAAATAG+TGG - Chr6:46601376-46601395 None:intergenic 20.0%
! AAAATCCCAGGAATATTATT+GGG + Chr6:46601478-46601497 MsG0680032641.01.T01:CDS 25.0%
! AAATTTATAAAAACACACCG+TGG - Chr6:46601680-46601699 None:intergenic 25.0%
! ATGCTCTTTATACAAACATA+TGG - Chr6:46600339-46600358 None:intergenic 25.0%
! CATAACAATAAGTCATAAAG+AGG - Chr6:46601213-46601232 None:intergenic 25.0%
! CATGTATTAAGAAAAGTTGT+TGG - Chr6:46599115-46599134 None:intergenic 25.0%
! TACTAGTTAAAACTCAAGAT+AGG - Chr6:46600104-46600123 None:intergenic 25.0%
! TCTAAAAAATTCAAACATCC+GGG + Chr6:46601001-46601020 MsG0680032641.01.T01:CDS 25.0%
! TTATAAATTTATTCTCGTCG+CGG + Chr6:46601690-46601709 MsG0680032641.01.T01:intron 25.0%
! TTCATTGTAATTACAAGTGT+CGG - Chr6:46598228-46598247 None:intergenic 25.0%
! TTGCATATATCTTACATGTA+GGG - Chr6:46601320-46601339 None:intergenic 25.0%
! TTTGATGCAAAGAAAAATGT+TGG + Chr6:46601896-46601915 MsG0680032641.01.T01:CDS 25.0%
! TTTGCATATATCTTACATGT+AGG - Chr6:46601321-46601340 None:intergenic 25.0%
!! AAAATAAGTCTTGTCAACTT+TGG + Chr6:46599818-46599837 MsG0680032641.01.T01:intron 25.0%
!! TACATTATCTCATTCCTTTT+AGG + Chr6:46601539-46601558 MsG0680032641.01.T01:intron 25.0%
!! TTGTTATTCTTCAGTATGTT+AGG + Chr6:46600510-46600529 MsG0680032641.01.T01:intron 25.0%
!!! AAATTTATGAAGCACTGATA+CGG - Chr6:46598323-46598342 None:intergenic 25.0%
!!! AATGGTCTTGTAATTAGAAT+TGG - Chr6:46598901-46598920 None:intergenic 25.0%
!!! ATTTAACCTGCTTGTTTTTT+AGG + Chr6:46599885-46599904 MsG0680032641.01.T01:intron 25.0%
!!! GTTACTTTCGTTCTTTTTTT+CGG + Chr6:46599333-46599352 MsG0680032641.01.T01:CDS 25.0%
!!! TTGAATTTTTTAGATGTGTG+AGG - Chr6:46600995-46601014 None:intergenic 25.0%
AAAAGCCCAATAATATTCCT+GGG - Chr6:46601486-46601505 None:intergenic 30.0%
AAAGAAACTATTGGGTTAAG+AGG - Chr6:46597993-46598012 None:intergenic 30.0%
AACCTGAAACAAATATTCGT+TGG - Chr6:46599689-46599708 None:intergenic 30.0%
AAGAGTTTATCTAGGTATAG+AGG - Chr6:46599285-46599304 None:intergenic 30.0%
AATAAGCTAACCCTAGTTTA+TGG + Chr6:46598837-46598856 MsG0680032641.01.T01:intron 30.0%
AATATTCATGGTGAAGTGAT+TGG + Chr6:46602076-46602095 MsG0680032641.01.T01:CDS 30.0%
AGAACTTCGTAAAATTGCTT+AGG - Chr6:46599419-46599438 None:intergenic 30.0%
AGAGGAAGAAAATGAAATCT+TGG - Chr6:46601195-46601214 None:intergenic 30.0%
AGTGATTGGTATTATCACTT+TGG + Chr6:46602090-46602109 MsG0680032641.01.T01:CDS 30.0%
ATATATGCAAAACATATGCG+TGG + Chr6:46601330-46601349 MsG0680032641.01.T01:intron 30.0%
ATATTTATCAATGTGCCATG+CGG + Chr6:46600193-46600212 MsG0680032641.01.T01:intron 30.0%
ATCCAACGAATATTTGTTTC+AGG + Chr6:46599684-46599703 MsG0680032641.01.T01:intron 30.0%
ATGATGTTGGAAATGGAATA+GGG + Chr6:46600154-46600173 MsG0680032641.01.T01:intron 30.0%
ATGCAAAGAAAAATGTTGGT+GGG + Chr6:46601900-46601919 MsG0680032641.01.T01:CDS 30.0%
ATGTTAATTCAAAGTTGGAC+TGG + Chr6:46600466-46600485 MsG0680032641.01.T01:CDS 30.0%
CAAAATCCCAGGAATATTAT+TGG + Chr6:46601477-46601496 MsG0680032641.01.T01:CDS 30.0%
CAAGCAATTTGTAGTAGATA+TGG + Chr6:46599488-46599507 MsG0680032641.01.T01:CDS 30.0%
CCTTCTTACGAAAATATTCA+TGG + Chr6:46602064-46602083 MsG0680032641.01.T01:CDS 30.0%
CTAAAAAATTCAAACATCCG+GGG + Chr6:46601002-46601021 MsG0680032641.01.T01:CDS 30.0%
CTATTCTCATATATAGACGA+TGG + Chr6:46599643-46599662 MsG0680032641.01.T01:intron 30.0%
CTTGATTGAAGAGTTTATCT+AGG - Chr6:46599293-46599312 None:intergenic 30.0%
GAAACAAATATTCGTTGGAT+AGG - Chr6:46599684-46599703 None:intergenic 30.0%
GTCTTGTAATTAGAATTGGA+GGG - Chr6:46598897-46598916 None:intergenic 30.0%
GTTAGATGTTCCGATAAAAA+GGG + Chr6:46599143-46599162 MsG0680032641.01.T01:intron 30.0%
TAAAAGCCCAATAATATTCC+TGG - Chr6:46601487-46601506 None:intergenic 30.0%
TAAAGAGTGATGACTTTGTA+GGG - Chr6:46601067-46601086 None:intergenic 30.0%
TATCTACTACAAATTGCTTG+TGG - Chr6:46599488-46599507 None:intergenic 30.0%
TGACGAAAAAAGAACCTAAA+AGG - Chr6:46601556-46601575 None:intergenic 30.0%
TGCATATATCTTACATGTAG+GGG - Chr6:46601319-46601338 None:intergenic 30.0%
TGTTAGATGTTCCGATAAAA+AGG + Chr6:46599142-46599161 MsG0680032641.01.T01:intron 30.0%
TTCTCTTCATCAATTAGTTG+CGG - Chr6:46601875-46601894 None:intergenic 30.0%
TTTCCAATGGTCTAGTAAAT+TGG - Chr6:46601259-46601278 None:intergenic 30.0%
! CCATGAATATTTTCGTAAGA+AGG - Chr6:46602067-46602086 None:intergenic 30.0%
!! TCTATGTAATGCTGTTTCTA+TGG + Chr6:46598407-46598426 MsG0680032641.01.T01:intron 30.0%
AAAGAGTGATGACTTTGTAG+GGG - Chr6:46601066-46601085 None:intergenic 35.0%
AATGGTCAACGCATTCAAAA+TGG - Chr6:46597752-46597771 None:intergenic 35.0%
ACAAGCACTTACCATAAACT+AGG - Chr6:46598851-46598870 None:intergenic 35.0%
ACACCAATTTACTAGACCAT+TGG + Chr6:46601253-46601272 MsG0680032641.01.T01:intron 35.0%
ATACATTCTCGTGCATACTT+GGG + Chr6:46600268-46600287 MsG0680032641.01.T01:intron 35.0%
ATACTGAACGAGTTCCAAAA+GGG + Chr6:46601797-46601816 MsG0680032641.01.T01:CDS 35.0%
ATAGTACAGATGTTGTTCCA+TGG + Chr6:46599607-46599626 MsG0680032641.01.T01:intron 35.0%
ATATATCTTACATGTAGGGG+TGG - Chr6:46601316-46601335 None:intergenic 35.0%
ATGTTACCCTCTTTCTTATC+CGG + Chr6:46599562-46599581 MsG0680032641.01.T01:CDS 35.0%
ATTGGACATTTGAAAGCCAA+TGG - Chr6:46599250-46599269 None:intergenic 35.0%
CAAGCACTTACCATAAACTA+GGG - Chr6:46598850-46598869 None:intergenic 35.0%
CACTACGTTCAAGAATTTCA+AGG - Chr6:46597924-46597943 None:intergenic 35.0%
CAGTGTAATTACAAGTGTGT+CGG - Chr6:46598090-46598109 None:intergenic 35.0%
CATGATGTTGGAAATGGAAT+AGG + Chr6:46600153-46600172 MsG0680032641.01.T01:intron 35.0%
CCAAAAGGGAAATAGTCATA+TGG + Chr6:46601811-46601830 MsG0680032641.01.T01:CDS 35.0%
CTATTCCATTTCCAACATCA+TGG - Chr6:46600155-46600174 None:intergenic 35.0%
CTTCCAACAAATGACTGAAT+TGG + Chr6:46600533-46600552 MsG0680032641.01.T01:intron 35.0%
CTTGAAATTCTTGAACGTAG+TGG + Chr6:46597922-46597941 MsG0680032641.01.T01:CDS 35.0%
CTTTCAAATGTCCAATATGC+AGG + Chr6:46599254-46599273 MsG0680032641.01.T01:CDS 35.0%
CTTTCTCAGAAAAAACAAGC+TGG + Chr6:46597949-46597968 MsG0680032641.01.T01:CDS 35.0%
GAAGTAAAGTAACAAGAAGC+TGG - Chr6:46598389-46598408 None:intergenic 35.0%
GATGAGACAACAATTATCAG+TGG + Chr6:46599934-46599953 MsG0680032641.01.T01:CDS 35.0%
GATGCAAAGAAAAATGTTGG+TGG + Chr6:46601899-46601918 MsG0680032641.01.T01:CDS 35.0%
GGTTCACAATTGATTGTGAA+AGG - Chr6:46599999-46600018 None:intergenic 35.0%
GTAAAGAGTGATGACTTTGT+AGG - Chr6:46601068-46601087 None:intergenic 35.0%
GTAGAATTTACCTTTCCAAC+CGG - Chr6:46599584-46599603 None:intergenic 35.0%
TATACTGAACGAGTTCCAAA+AGG + Chr6:46601796-46601815 MsG0680032641.01.T01:CDS 35.0%
TCGTTCAGTATATCGTATAG+AGG - Chr6:46601788-46601807 None:intergenic 35.0%
TGATAAGCGCTTATTCTCTA+AGG + Chr6:46598628-46598647 MsG0680032641.01.T01:intron 35.0%
TGCAAAGAAAAATGTTGGTG+GGG + Chr6:46601901-46601920 MsG0680032641.01.T01:CDS 35.0%
TTCACAAGCTCAAACCAAAT+GGG - Chr6:46598655-46598674 None:intergenic 35.0%
TTGCTATCTTTGTACTTCAC+TGG + Chr6:46599374-46599393 MsG0680032641.01.T01:intron 35.0%
TTTACCAAGAGCAATGACTT+GGG + Chr6:46601083-46601102 MsG0680032641.01.T01:intron 35.0%
TTTCACAAGCTCAAACCAAA+TGG - Chr6:46598656-46598675 None:intergenic 35.0%
TTTGAGAATAGACAGGAACT+CGG - Chr6:46601461-46601480 None:intergenic 35.0%
! AATTGCAGCACTTACCTTTT+CGG - Chr6:46599974-46599993 None:intergenic 35.0%
! CCATATGACTATTTCCCTTT+TGG - Chr6:46601814-46601833 None:intergenic 35.0%
! GGTCTTGTAATTAGAATTGG+AGG - Chr6:46598898-46598917 None:intergenic 35.0%
! TAGGCAGGATAAAAGTTTTC+AGG - Chr6:46601391-46601410 None:intergenic 35.0%
! TCATCTAGTGGGTATTCATA+TGG - Chr6:46600864-46600883 None:intergenic 35.0%
! TGTTTTCTTGTTCTCTTTGC+CGG + Chr6:46597850-46597869 MsG0680032641.01.T01:CDS 35.0%
! TTATTGCCAGTAAGCTTTGA+AGG - Chr6:46602001-46602020 None:intergenic 35.0%
! TTCGTTGGATAGGTAGTTTT+CGG - Chr6:46599674-46599693 None:intergenic 35.0%
!! ATGTAATGCTGTTTCTATGG+AGG + Chr6:46598410-46598429 MsG0680032641.01.T01:intron 35.0%
!! CGAATATTTGTTTCAGGTTC+TGG + Chr6:46599690-46599709 MsG0680032641.01.T01:intron 35.0%
!!! CTGGTGTTGTTTTTTAACCA+CGG - Chr6:46598370-46598389 None:intergenic 35.0%
!!! TGGTGTTGTTTTTTAACCAC+GGG - Chr6:46598369-46598388 None:intergenic 35.0%
!!! TTGTTTTTTAGGCTGGGAAA+GGG + Chr6:46599896-46599915 MsG0680032641.01.T01:intron 35.0%
!!! TTTCGTTCTTTTTTTCGGTG+AGG + Chr6:46599338-46599357 MsG0680032641.01.T01:CDS 35.0%
AAAGCTCTTGTCTCCATTCA+TGG + Chr6:46599760-46599779 MsG0680032641.01.T01:CDS 40.0%
ACATGATCACTGGAAGTGAA+CGG - Chr6:46600236-46600255 None:intergenic 40.0%
ACTATTGGGTTAAGAGGAAG+AGG - Chr6:46597987-46598006 None:intergenic 40.0%
AGCAAGGTGGTTACTACTAA+TGG - Chr6:46597770-46597789 None:intergenic 40.0%
AGCATCCATGATGTTGGAAA+TGG + Chr6:46600147-46600166 MsG0680032641.01.T01:intron 40.0%
AGTAGTGATGGCACATTAAG+CGG + Chr6:46602040-46602059 MsG0680032641.01.T01:CDS 40.0%
ATCCATGTTGCAGATCCAAA+AGG - Chr6:46597811-46597830 None:intergenic 40.0%
ATCCTGCCTATCTCAAATCA+GGG + Chr6:46601401-46601420 MsG0680032641.01.T01:intron 40.0%
ATGCCGCACAAATTCTATCA+TGG - Chr6:46600580-46600599 None:intergenic 40.0%
CAAAGAGTTAGGCAGGTTTA+GGG - Chr6:46599223-46599242 None:intergenic 40.0%
CATACATTCTCGTGCATACT+TGG + Chr6:46600267-46600286 MsG0680032641.01.T01:intron 40.0%
CGATCATGGTAGAATTTGTG+CGG + Chr6:46600653-46600672 MsG0680032641.01.T01:intron 40.0%
CGTCCATGATAGAATTTGTG+CGG + Chr6:46600574-46600593 MsG0680032641.01.T01:intron 40.0%
CTAGATGATCGTTTCAACCA+TGG + Chr6:46600876-46600895 MsG0680032641.01.T01:CDS 40.0%
CTGTCTATTCTCAAAATCCC+AGG + Chr6:46601466-46601485 MsG0680032641.01.T01:CDS 40.0%
CTTTACCAAGAGCAATGACT+TGG + Chr6:46601082-46601101 MsG0680032641.01.T01:intron 40.0%
GAACATGCTCAATCTATCAC+AGG + Chr6:46600944-46600963 MsG0680032641.01.T01:CDS 40.0%
GAATCCAGTTCTTGTAGCAA+TGG - Chr6:46601944-46601963 None:intergenic 40.0%
GAGCCAATTCAGTCATTTGT+TGG - Chr6:46600539-46600558 None:intergenic 40.0%
GCACGAGAATGTATGACTAA+CGG - Chr6:46600262-46600281 None:intergenic 40.0%
GGTTGAAACGATCATCTAGT+GGG - Chr6:46600875-46600894 None:intergenic 40.0%
TACTCCATTGCTACAAGAAC+TGG + Chr6:46601937-46601956 MsG0680032641.01.T01:CDS 40.0%
TATCCTGCCTATCTCAAATC+AGG + Chr6:46601400-46601419 MsG0680032641.01.T01:intron 40.0%
TATCTATCCGGAGAATACCA+CGG + Chr6:46601660-46601679 MsG0680032641.01.T01:CDS 40.0%
TCAAAGAGTTAGGCAGGTTT+AGG - Chr6:46599224-46599243 None:intergenic 40.0%
TCACAAGCTCAAACCAAATG+GGG - Chr6:46598654-46598673 None:intergenic 40.0%
TCTTTCTTATCCGGTTGGAA+AGG + Chr6:46599571-46599590 MsG0680032641.01.T01:CDS 40.0%
TGGTTGAAACGATCATCTAG+TGG - Chr6:46600876-46600895 None:intergenic 40.0%
TTACCAAGAGCAATGACTTG+GGG + Chr6:46601084-46601103 MsG0680032641.01.T01:intron 40.0%
TTATACCTCCATGCCATGAA+TGG - Chr6:46599776-46599795 None:intergenic 40.0%
TTCCAACCGGATAAGAAAGA+GGG - Chr6:46599571-46599590 None:intergenic 40.0%
TTCCGATAAAAAGGGACTGT+GGG + Chr6:46599151-46599170 MsG0680032641.01.T01:intron 40.0%
TTGGAAATGGAATAGGGAAC+TGG + Chr6:46600160-46600179 MsG0680032641.01.T01:intron 40.0%
TTTAGATATGTGCATGCCCT+TGG + Chr6:46602154-46602173 MsG0680032641.01.T01:CDS 40.0%
TTTCCAACCGGATAAGAAAG+AGG - Chr6:46599572-46599591 None:intergenic 40.0%
! ACTAGTTTGCAGAGTAGTGA+TGG + Chr6:46602028-46602047 MsG0680032641.01.T01:CDS 40.0%
! AGCACTTGATTTGACCGAAA+AGG + Chr6:46599957-46599976 MsG0680032641.01.T01:CDS 40.0%
! AGTAGATATGGTCTTGCTGT+AGG + Chr6:46599500-46599519 MsG0680032641.01.T01:CDS 40.0%
! CTTGGGTTCTCTCTATGTTT+TGG + Chr6:46600285-46600304 MsG0680032641.01.T01:intron 40.0%
! GTTGTTTCCCTCAAACTAGT+AGG + Chr6:46601288-46601307 MsG0680032641.01.T01:intron 40.0%
! TAACTTGTCGCTCTAATTGC+AGG + Chr6:46599457-46599476 MsG0680032641.01.T01:intron 40.0%
! TACCTTTTGGATCTGCAACA+TGG + Chr6:46597806-46597825 MsG0680032641.01.T01:CDS 40.0%
! TCGTATAGAGGCATATCAGA+TGG - Chr6:46601776-46601795 None:intergenic 40.0%
! TCTAGTGGGTATTCATATGG+TGG - Chr6:46600861-46600880 None:intergenic 40.0%
! TGGGTATTCATATGGTGGAA+CGG - Chr6:46600856-46600875 None:intergenic 40.0%
!! CTGGGATTTTGAGAATAGAC+AGG - Chr6:46601468-46601487 None:intergenic 40.0%
!! TGTTTTTGAACAGACTGCTG+AGG + Chr6:46600407-46600426 MsG0680032641.01.T01:intron 40.0%
!! TTATTCTCTAAGGCCCCATT+TGG + Chr6:46598638-46598657 MsG0680032641.01.T01:intron 40.0%
!! TTGGGCCTAAATGATTTGCT+CGG - Chr6:46601125-46601144 None:intergenic 40.0%
!!! AACCTGCTTGTTTTTTAGGC+TGG + Chr6:46599889-46599908 MsG0680032641.01.T01:intron 40.0%
!!! ACCTGCTTGTTTTTTAGGCT+GGG + Chr6:46599890-46599909 MsG0680032641.01.T01:intron 40.0%
!!! AGTTTTGGAATAACACCGCA+TGG - Chr6:46600211-46600230 None:intergenic 40.0%
!!! CTTGTTTTTTAGGCTGGGAA+AGG + Chr6:46599895-46599914 MsG0680032641.01.T01:intron 40.0%
!!! TGTTTTTTAGGCTGGGAAAG+GGG + Chr6:46599897-46599916 MsG0680032641.01.T01:intron 40.0%
AAACACACCGTGGTATTCTC+CGG - Chr6:46601670-46601689 None:intergenic 45.0%
ACGCACAAGCCATGAAAAGT+TGG - Chr6:46599528-46599547 None:intergenic 45.0%
ATCTTCTATTTGGGCACGCT+GGG + Chr6:46600123-46600142 MsG0680032641.01.T01:intron 45.0%
ATGCCTCACAAGTTCTACCA+TGG - Chr6:46600817-46600836 None:intergenic 45.0%
CAACCATGGTAGAACTTGTG+AGG + Chr6:46600890-46600909 MsG0680032641.01.T01:CDS 45.0%
CACTTAGAAGGGATAATCCC+CGG - Chr6:46601022-46601041 None:intergenic 45.0%
CCAATGGCTGTCAAAGAGTT+AGG - Chr6:46599234-46599253 None:intergenic 45.0%
CCTAACTCTTTGACAGCCAT+TGG + Chr6:46599231-46599250 MsG0680032641.01.T01:CDS 45.0%
CTAACGGAACACATGATCAC+TGG - Chr6:46600246-46600265 None:intergenic 45.0%
CTACATGATCATTGCGACCA+TGG + Chr6:46600797-46600816 MsG0680032641.01.T01:CDS 45.0%
CTGGACCGAGCAAATCATTT+AGG + Chr6:46601117-46601136 MsG0680032641.01.T01:intron 45.0%
CTGTCAGTGCAGTATCTATC+CGG + Chr6:46601648-46601667 MsG0680032641.01.T01:CDS 45.0%
GCTCATGTGAGCACTTAGAA+GGG - Chr6:46601033-46601052 None:intergenic 45.0%
GTCAAGCCTTCAAAGCTTAC+TGG + Chr6:46601992-46602011 MsG0680032641.01.T01:CDS 45.0%
GTTCCGATAAAAAGGGACTG+TGG + Chr6:46599150-46599169 MsG0680032641.01.T01:intron 45.0%
GTTGTGAAGACTACCGGAAA+AGG + Chr6:46601839-46601858 MsG0680032641.01.T01:CDS 45.0%
TACCCTCTTTCTTATCCGGT+TGG + Chr6:46599566-46599585 MsG0680032641.01.T01:CDS 45.0%
TAGAGGAAGAGCCTGCATAT+TGG - Chr6:46599268-46599287 None:intergenic 45.0%
TATCTTCTATTTGGGCACGC+TGG + Chr6:46600122-46600141 MsG0680032641.01.T01:intron 45.0%
TATGAAACACGGACACTCCT+CGG + Chr6:46598035-46598054 MsG0680032641.01.T01:intron 45.0%
TCCCAGCCTAAAAAACAAGC+AGG - Chr6:46599894-46599913 None:intergenic 45.0%
TCTTGTCTCCATTCATGGCA+TGG + Chr6:46599765-46599784 MsG0680032641.01.T01:CDS 45.0%
TGAGACGGTACAGTTGACAA+GGG - Chr6:46600920-46600939 None:intergenic 45.0%
TGCTCATGTGAGCACTTAGA+AGG - Chr6:46601034-46601053 None:intergenic 45.0%
TGGTCGCAATGATCATGTAG+CGG - Chr6:46600797-46600816 None:intergenic 45.0%
! ATCTCAAATCAGGGAGGCAT+TGG + Chr6:46601410-46601429 MsG0680032641.01.T01:intron 45.0%
! ATGCCTCCCTGATTTGAGAT+AGG - Chr6:46601410-46601429 None:intergenic 45.0%
! CGGAGTTTCTTTGCCTTTTC+CGG - Chr6:46601855-46601874 None:intergenic 45.0%
! CTCCCACAGTCCCTTTTTAT+CGG - Chr6:46599156-46599175 None:intergenic 45.0%
! CTGTAGGTGCCAACTTTTCA+TGG + Chr6:46599516-46599535 MsG0680032641.01.T01:CDS 45.0%
! GATAGATACTGCACTGACAG+GGG - Chr6:46601648-46601667 None:intergenic 45.0%
! GGATAGATACTGCACTGACA+GGG - Chr6:46601649-46601668 None:intergenic 45.0%
! GGTGGATCCTACTAGTTTGA+GGG - Chr6:46601298-46601317 None:intergenic 45.0%
! TACCAAGAGCAATGACTTGG+GGG + Chr6:46601085-46601104 MsG0680032641.01.T01:intron 45.0%
! TCCAAAAGGTATGCCTTCGT+TGG - Chr6:46597797-46597816 None:intergenic 45.0%
! TGGAAGTGAACGGTGAGTTT+TGG - Chr6:46600226-46600245 None:intergenic 45.0%
! TTTTGAACAGACTGCTGAGG+AGG + Chr6:46600410-46600429 MsG0680032641.01.T01:intron 45.0%
!! ACCAACGAAGGCATACCTTT+TGG + Chr6:46597793-46597812 MsG0680032641.01.T01:CDS 45.0%
!! AGGAACGGTGTTGTTCACAA+AGG - Chr6:46600683-46600702 None:intergenic 45.0%
!! ATGAAGCACTGATACGGACA+CGG - Chr6:46598317-46598336 None:intergenic 45.0%
!! GGAACGACGAGGCTTTATTT+AGG + Chr6:46599725-46599744 MsG0680032641.01.T01:CDS 45.0%
!! TCTCAAATCAGGGAGGCATT+GGG + Chr6:46601411-46601430 MsG0680032641.01.T01:intron 45.0%
!!! GTTTTTTAGGCTGGGAAAGG+GGG + Chr6:46599898-46599917 MsG0680032641.01.T01:intron 45.0%
!!! TTTTCTTTTTATAAATAATT+AGG + Chr6:46601586-46601605 MsG0680032641.01.T01:intron 5.0%
ATAGCCAGAGCTTGATGCCA+TGG - Chr6:46599627-46599646 None:intergenic 50.0%
ATGCCTCACAAGTTCTGCCA+TGG - Chr6:46600738-46600757 None:intergenic 50.0%
CATGAGACCAAGTGTGAGAC+CGG - Chr6:46597884-46597903 None:intergenic 50.0%
CCACATAGTCGTAGCTACCA+TGG + Chr6:46600718-46600737 MsG0680032641.01.T01:intron 50.0%
CCACTCAATCAGCTCGATCA+TGG + Chr6:46600639-46600658 MsG0680032641.01.T01:intron 50.0%
CCATGATCGAGCTGATTGAG+TGG - Chr6:46600642-46600661 None:intergenic 50.0%
CCATGGTAGCTACGACTATG+TGG - Chr6:46600721-46600740 None:intergenic 50.0%
CGACCATGGTAGAACTTGTG+AGG + Chr6:46600811-46600830 MsG0680032641.01.T01:CDS 50.0%
CGAGCATACTTGCGATGGAA+CGG - Chr6:46600619-46600638 None:intergenic 50.0%
CGGGCATACCTGTGATAGAA+CGG - Chr6:46600777-46600796 None:intergenic 50.0%
CGGGCATATCTGAGAAGGAA+CGG - Chr6:46600698-46600717 None:intergenic 50.0%
CTACCATGGCAGAACTTGTG+AGG + Chr6:46600732-46600751 MsG0680032641.01.T01:intron 50.0%
CTGCCTATCTCAAATCAGGG+AGG + Chr6:46601404-46601423 MsG0680032641.01.T01:intron 50.0%
GAGGAACATGTTCGTACCAG+TGG - Chr6:46600976-46600995 None:intergenic 50.0%
GCTGCTGTTGTGAAGACTAC+CGG + Chr6:46601833-46601852 MsG0680032641.01.T01:CDS 50.0%
GGCATACCTGTGATAGAACG+GGG - Chr6:46600775-46600794 None:intergenic 50.0%
GGGCATACCTGTGATAGAAC+GGG - Chr6:46600776-46600795 None:intergenic 50.0%
GGTCGCAATGATCATGTAGC+GGG - Chr6:46600796-46600815 None:intergenic 50.0%
GTGAGACGGTACAGTTGACA+AGG - Chr6:46600921-46600940 None:intergenic 50.0%
TAGAACGGGGCAGTTCACAA+AGG - Chr6:46600762-46600781 None:intergenic 50.0%
TGAGCATGTTCGCAGTGAGA+CGG - Chr6:46600935-46600954 None:intergenic 50.0%
TGGAACGGAGCTGTTCACAA+AGG - Chr6:46600604-46600623 None:intergenic 50.0%
TGGCTGTCAAAGAGTTAGGC+AGG - Chr6:46599230-46599249 None:intergenic 50.0%
TGGGAAAGATTCTTGCCCGT+GGG + Chr6:46601430-46601449 MsG0680032641.01.T01:CDS 50.0%
TGGTAGCTACGACTATGTGG+CGG - Chr6:46600718-46600737 None:intergenic 50.0%
TGTCTCCATTCATGGCATGG+AGG + Chr6:46599768-46599787 MsG0680032641.01.T01:CDS 50.0%
TGTTCCATGGCATCAAGCTC+TGG + Chr6:46599620-46599639 MsG0680032641.01.T01:intron 50.0%
TTGGGAAAGATTCTTGCCCG+TGG + Chr6:46601429-46601448 MsG0680032641.01.T01:CDS 50.0%
! ACCAAGAGCAATGACTTGGG+GGG + Chr6:46601086-46601105 MsG0680032641.01.T01:intron 50.0%
! CGGATAGATACTGCACTGAC+AGG - Chr6:46601650-46601669 None:intergenic 50.0%
! CTCCCTGATTTGAGATAGGC+AGG - Chr6:46601406-46601425 None:intergenic 50.0%
! GCAACATGGATTGCTTACGC+TGG + Chr6:46597820-46597839 MsG0680032641.01.T01:CDS 50.0%
! GGGTGGATCCTACTAGTTTG+AGG - Chr6:46601299-46601318 None:intergenic 50.0%
!! AGGTTCTGGATTGCGTACTG+GGG + Chr6:46599704-46599723 MsG0680032641.01.T01:intron 50.0%
!! CAGGTTCTGGATTGCGTACT+GGG + Chr6:46599703-46599722 MsG0680032641.01.T01:intron 50.0%
!! CTGGGAAGCATCCATGATGT+TGG + Chr6:46600141-46600160 MsG0680032641.01.T01:intron 50.0%
!! TCAGGTTCTGGATTGCGTAC+TGG + Chr6:46599702-46599721 MsG0680032641.01.T01:intron 50.0%
!! TGGAACGGTGCTGTTCACAA+GGG - Chr6:46600841-46600860 None:intergenic 50.0%
ACACGGACACTCCTCGGATT+AGG + Chr6:46598041-46598060 MsG0680032641.01.T01:intron 55.0%
AGCGGGACACGTCTAATTCG+AGG - Chr6:46598186-46598205 None:intergenic 55.0%
AGTGGCGAGCATACTTGCGA+TGG - Chr6:46600624-46600643 None:intergenic 55.0%
CACCTTGCTCTCACCAACGA+AGG + Chr6:46597781-46597800 MsG0680032641.01.T01:CDS 55.0%
CTATCACAGGCACTCACCAC+TGG + Chr6:46600957-46600976 MsG0680032641.01.T01:CDS 55.0%
CTCTTTGCCGGAGTCATGTC+CGG + Chr6:46597862-46597881 MsG0680032641.01.T01:CDS 55.0%
CTGACAGGGGTCTCTGATTC+AGG - Chr6:46601635-46601654 None:intergenic 55.0%
GAACTGCCCCGTTCTATCAC+AGG + Chr6:46600766-46600785 MsG0680032641.01.T01:intron 55.0%
GGTAGCTACGACTATGTGGC+GGG - Chr6:46600717-46600736 None:intergenic 55.0%
GTCATGTCCGGTCTCACACT+TGG + Chr6:46597874-46597893 MsG0680032641.01.T01:CDS 55.0%
GTGATGACTTTGTAGGGGCG+AGG - Chr6:46601061-46601080 None:intergenic 55.0%
TGCAGCGATCATTCTTCCCG+TGG + Chr6:46598350-46598369 MsG0680032641.01.T01:intron 55.0%
TGTCGGACCGTGTACAACAC+CGG - Chr6:46598073-46598092 None:intergenic 55.0%
TGTGAGACCGGACATGACTC+CGG - Chr6:46597872-46597891 None:intergenic 55.0%
! CTTCGTTGGTGAGAGCAAGG+TGG - Chr6:46597783-46597802 None:intergenic 55.0%
! TGCCTTCGTTGGTGAGAGCA+AGG - Chr6:46597786-46597805 None:intergenic 55.0%
!! GTGGAACGGTGCTGTTCACA+AGG - Chr6:46600842-46600861 None:intergenic 55.0%
!! TGTGGCGGGCATATCTGAGA+AGG - Chr6:46600703-46600722 None:intergenic 55.0%
GACTTGGGGGGCTACTGTTC+TGG + Chr6:46601098-46601117 MsG0680032641.01.T01:intron 60.0%
GCCCCCCAAGTCATTGCTCT+TGG - Chr6:46601090-46601109 None:intergenic 60.0%
GTCGGACCGTGTACAACACC+GGG - Chr6:46598072-46598091 None:intergenic 60.0%
TTGCGTACTGGGGAACGACG+AGG + Chr6:46599714-46599733 MsG0680032641.01.T01:CDS 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + Chr6:46598051-46598070 MsG0680032641.01.T01:intron 60.0%
!! GCGTGTCCCGGTGTTGTACA+CGG + Chr6:46598063-46598082 MsG0680032641.01.T01:intron 60.0%
ACCGGGACACGCCTAATCCG+AGG - Chr6:46598055-46598074 None:intergenic 65.0%
AGGAACTCGGCTGTGCCCAC+GGG - Chr6:46601448-46601467 None:intergenic 65.0%
CAGGAACTCGGCTGTGCCCA+CGG - Chr6:46601449-46601468 None:intergenic 65.0%
GACGTGTCCCGCTGTCGTGT+CGG + Chr6:46598193-46598212 MsG0680032641.01.T01:CDS 65.0%
GTCCGACACCGACACGACAG+CGG - Chr6:46598204-46598223 None:intergenic 65.0%
TCCGACACCGACACGACAGC+GGG - Chr6:46598203-46598222 None:intergenic 65.0%
! TCCCGCTGTCGTGTCGGTGT+CGG + Chr6:46598199-46598218 MsG0680032641.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 46597736 46602183 46597736 ID=MsG0680032641.01;Name=MsG0680032641.01
Chr6 mRNA 46597736 46602183 46597736 ID=MsG0680032641.01.T01;Parent=MsG0680032641.01;Name=MsG0680032641.01.T01;_AED=0.50;_eAED=0.62;_QI=0|0.6|0.54|1|0.8|0.81|11|0|551
Chr6 exon 46597736 46598004 46597736 ID=MsG0680032641.01.T01:exon:5485;Parent=MsG0680032641.01.T01
Chr6 exon 46598182 46598216 46598182 ID=MsG0680032641.01.T01:exon:5486;Parent=MsG0680032641.01.T01
Chr6 exon 46599208 46599359 46599208 ID=MsG0680032641.01.T01:exon:5487;Parent=MsG0680032641.01.T01
Chr6 exon 46599479 46599592 46599479 ID=MsG0680032641.01.T01:exon:5488;Parent=MsG0680032641.01.T01
Chr6 exon 46599706 46599789 46599706 ID=MsG0680032641.01.T01:exon:5489;Parent=MsG0680032641.01.T01
Chr6 exon 46599907 46599978 46599907 ID=MsG0680032641.01.T01:exon:5490;Parent=MsG0680032641.01.T01
Chr6 exon 46600420 46600487 46600420 ID=MsG0680032641.01.T01:exon:5491;Parent=MsG0680032641.01.T01
Chr6 exon 46600788 46601072 46600788 ID=MsG0680032641.01.T01:exon:5492;Parent=MsG0680032641.01.T01
Chr6 exon 46601422 46601509 46601422 ID=MsG0680032641.01.T01:exon:5493;Parent=MsG0680032641.01.T01
Chr6 exon 46601608 46601681 46601608 ID=MsG0680032641.01.T01:exon:5494;Parent=MsG0680032641.01.T01
Chr6 exon 46601769 46602183 46601769 ID=MsG0680032641.01.T01:exon:5495;Parent=MsG0680032641.01.T01
Chr6 CDS 46597736 46598004 46597736 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46598182 46598216 46598182 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46599208 46599359 46599208 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46599479 46599592 46599479 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46599706 46599789 46599706 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46599907 46599978 46599907 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46600420 46600487 46600420 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46600788 46601072 46600788 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46601422 46601509 46601422 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46601608 46601681 46601608 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Chr6 CDS 46601769 46602183 46601769 ID=MsG0680032641.01.T01:cds;Parent=MsG0680032641.01.T01
Gene Sequence

>MsG0680032641.01.T01

ATGACGTATGGAACCATTTTGAATGCGTTGACCATTAGTAGTAACCACCTTGCTCTCACCAACGAAGGCATACCTTTTGGATCTGCAACATGGATTGCTTACGCTGGAATATGCTGTTTTCTTGTTCTCTTTGCCGGAGTCATGTCCGGTCTCACACTTGGTCTCATGTCTCTCAGTCTTGTAGACCTTGAAATTCTTGAACGTAGTGGTTCTCTTTCTCAGAAAAAACAAGCTGGTAGTTACTTAATCCTCTTCCTCTTAACCCAATATCCTCGAATTAGACGTGTCCCGCTGTCGTGTCGGTTTTACACTGATTCCCTAAACCTGCCTAACTCTTTGACAGCCATTGGCTTTCAAATGTCCAATATGCAGGCTCTTCCTCTATACCTAGATAAACTCTTCAATCAAGTTCTTGCTATCATTCTCTCTGTTACTTTCGTTCTTTTTTTCGGTGAGGTTATTCCACAAGCAATTTGTAGTAGATATGGTCTTGCTGTAGGTGCCAACTTTTCATGGCTTGTGCGTATTTTAATGATTATATGTTACCCTCTTTCTTATCCGGTTGGAAAGGTTCTGGATTGCGTACTGGGGAACGACGAGGCTTTATTTAGGCGTGCTCAGTTAAAAGCTCTTGTCTCCATTCATGGCATGGAGGCTGGGAAAGGGGGCGAACTTACACATGATGAGACAACAATTATCAGTGGAGCACTTGATTTGACCGAAAAGACTGCTGAGGAGGCTATGACTCCTATTGAATCAACATTTTCTTTAGATGTTAATTCAAAGTTGGACTGGTATGCCCGCTACATGATCATTGCGACCATGGTAGAACTTGTGAGGCATTCCCTTGTGAACAGCACCGTTCCACCATATGAATACCCACTAGATGATCGTTTCAACCATGGTAGAACTTGTGAGGCATTCCCTTGTCAACTGTACCGTCTCACTGCGAACATGCTCAATCTATCACAGGCACTCACCACTGGTACGAACATGTTCCTCACACATCTAAAAAATTCAAACATCCGGGGATTATCCCTTCTAAGTGCTCACATGAGCAGTTGCCTCGCCCCTACAAAGGAGGCATTGGGAAAGATTCTTGCCCGTGGGCACAGCCGAGTTCCTGTCTATTCTCAAAATCCCAGGAATATTATTGGGCTTTTAATTGTAAAAAATCTTCTTACTGTTAGACCTGAATCAGAGACCCCTGTCAGTGCAGTATCTATCCGGAGAATACCACGGGTTCCATCTGATATGCCTCTATACGATATACTGAACGAGTTCCAAAAGGGAAATAGTCATATGGCTGCTGTTGTGAAGACTACCGGAAAAGGCAAAGAAACTCCGCAACTAATTGATGAAGAGAAATTTGATGCAAAGAAAAATGTTGGTGGGGATTCACAGTTAACTACTCCATTGCTACAAGAACTGGATTCGAAATCAGAAAATGTTGTTGTTGACATTGTCAAGCCTTCAAAGCTTACTGGCAATAATAAGCAAACTAGTTTGCAGAGTAGTGATGGCACATTAAGCGGTCCTTCTTACGAAAATATTCATGGTGAAGTGATTGGTATTATCACTTTGGAAGATGTATTTGAAGAACTCTTGCAAGTAAACTTCTGTCATTTTAGATATGTGCATGCCCTTGGTTTTTAG

Protein sequence

>MsG0680032641.01.T01

MTYGTILNALTISSNHLALTNEGIPFGSATWIAYAGICCFLVLFAGVMSGLTLGLMSLSLVDLEILERSGSLSQKKQAGSYLILFLLTQYPRIRRVPLSCRFYTDSLNLPNSLTAIGFQMSNMQALPLYLDKLFNQVLAIILSVTFVLFFGEVIPQAICSRYGLAVGANFSWLVRILMIICYPLSYPVGKVLDCVLGNDEALFRRAQLKALVSIHGMEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWYARYMIIATMVELVRHSLVNSTVPPYEYPLDDRFNHGRTCEAFPCQLYRLTANMLNLSQALTTGTNMFLTHLKNSNIRGLSLLSAHMSSCLAPTKEALGKILARGHSRVPVYSQNPRNIIGLLIVKNLLTVRPESETPVSAVSIRRIPRVPSDMPLYDILNEFQKGNSHMAAVVKTTGKGKETPQLIDEEKFDAKKNVGGDSQLTTPLLQELDSKSENVVVDIVKPSKLTGNNKQTSLQSSDGTLSGPSYENIHGEVIGIITLEDVFEELLQVNFCHFRYVHALGF*