Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034749.01.T01 | XP_039682605.1 | 98.616 | 289 | 4 | 0 | 1 | 289 | 1 | 289 | 0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034749.01.T01 | Q9SKD0 | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 8.07E-94 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034749.01.T01 | A0A396HIF8 | 98.616 | 289 | 4 | 0 | 1 | 289 | 1 | 289 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048383.01 | MsG0680034749.01 | 0.802773 | 4.785343e-49 | 2.364266e-46 |
| MsG0180000001.01 | MsG0680034749.01 | 0.804395 | 2.204932e-49 | 1.135591e-46 |
| MsG0180000580.01 | MsG0680034749.01 | 0.800214 | 1.601066e-48 | 7.412638e-46 |
| MsG0180000799.01 | MsG0680034749.01 | 0.806885 | 6.619214e-50 | 3.634223e-47 |
| MsG0180001599.01 | MsG0680034749.01 | 0.842055 | 3.265514e-58 | 4.891593e-55 |
| MsG0180001832.01 | MsG0680034749.01 | 0.817668 | 2.925941e-52 | 2.144338e-49 |
| MsG0180001911.01 | MsG0680034749.01 | 0.813461 | 2.530495e-51 | 1.653656e-48 |
| MsG0180003303.01 | MsG0680034749.01 | 0.812905 | 3.350457e-51 | 2.156642e-48 |
| MsG0180003744.01 | MsG0680034749.01 | 0.814007 | 1.917975e-51 | 1.271987e-48 |
| MsG0180003984.01 | MsG0680034749.01 | 0.823699 | 1.203604e-53 | 1.044184e-50 |
| MsG0180004767.01 | MsG0680034749.01 | 0.838143 | 3.424984e-57 | 4.545883e-54 |
| MsG0180005504.01 | MsG0680034749.01 | 0.827374 | 1.620897e-54 | 1.562137e-51 |
| MsG0280006305.01 | MsG0680034749.01 | 0.836841 | 7.386482e-57 | 9.421971e-54 |
| MsG0280010633.01 | MsG0680034749.01 | 0.822976 | 1.775762e-53 | 1.509189e-50 |
| MsG0380014489.01 | MsG0680034749.01 | 0.808722 | 2.692774e-50 | 1.551039e-47 |
| MsG0380014539.01 | MsG0680034749.01 | 0.805314 | 1.416918e-49 | 7.472487e-47 |
| MsG0680034061.01 | MsG0680034749.01 | 0.800624 | 1.320619e-48 | 6.178197e-46 |
| MsG0680034392.01 | MsG0680034749.01 | 0.822410 | 2.404194e-53 | 2.010834e-50 |
| MsG0680034749.01 | MsG0680035306.01 | 0.832189 | 1.089644e-55 | 1.208906e-52 |
| MsG0680034749.01 | MsG0680035574.01 | 0.822170 | 2.734025e-53 | 2.270789e-50 |
| MsG0680034749.01 | MsG0780037755.01 | 0.804063 | 2.585931e-49 | 1.320600e-46 |
| MsG0680034749.01 | MsG0780038565.01 | 0.808409 | 3.142255e-50 | 1.795300e-47 |
| MsG0680034749.01 | MsG0780039845.01 | 0.823495 | 1.343478e-53 | 1.158663e-50 |
| MsG0680034749.01 | MsG0780040125.01 | 0.817112 | 3.904831e-52 | 2.818349e-49 |
| MsG0680034749.01 | MsG0780040312.01 | 0.815581 | 8.589066e-52 | 5.945012e-49 |
| MsG0680034749.01 | MsG0780040411.01 | 0.806604 | 7.587264e-50 | 4.135645e-47 |
| MsG0680034749.01 | MsG0780040845.01 | 0.838229 | 3.255399e-57 | 4.332100e-54 |
| MsG0680034749.01 | MsG0780040856.01 | 0.822354 | 2.478172e-53 | 2.069316e-50 |
| MsG0680034749.01 | MsG0780041423.01 | 0.826593 | 2.491594e-54 | 2.346868e-51 |
| MsG0680034749.01 | MsG0880042552.01 | 0.821602 | 3.700880e-53 | 3.024558e-50 |
| MsG0680034749.01 | MsG0880042760.01 | 0.807721 | 4.401100e-50 | 2.469477e-47 |
| MsG0680034749.01 | MsG0880045619.01 | 0.817747 | 2.809636e-52 | 2.063571e-49 |
| MsG0480018462.01 | MsG0680034749.01 | 0.823075 | 1.683389e-53 | 1.434788e-50 |
| MsG0480020740.01 | MsG0680034749.01 | 0.827851 | 1.244947e-54 | 1.216434e-51 |
| MsG0480020917.01 | MsG0680034749.01 | 0.842842 | 2.019299e-58 | 3.100508e-55 |
| MsG0480021265.01 | MsG0680034749.01 | 0.801977 | 6.980180e-49 | 3.379115e-46 |
| MsG0480022464.01 | MsG0680034749.01 | 0.819418 | 1.173776e-52 | 9.027461e-50 |
| MsG0480022678.01 | MsG0680034749.01 | 0.846709 | 1.831760e-59 | 3.180996e-56 |
| MsG0480023240.01 | MsG0680034749.01 | 0.802351 | 5.846717e-49 | 2.857768e-46 |
| MsG0480023412.01 | MsG0680034749.01 | 0.807637 | 4.586542e-50 | 2.567813e-47 |
| MsG0480023895.01 | MsG0680034749.01 | 0.828336 | 9.514160e-55 | 9.428264e-52 |
| MsG0580024353.01 | MsG0680034749.01 | 0.824301 | 8.694413e-54 | 7.670278e-51 |
| MsG0580025184.01 | MsG0680034749.01 | 0.814277 | 1.672428e-51 | 1.117300e-48 |
| MsG0580025408.01 | MsG0680034749.01 | 0.855030 | 8.290377e-62 | 1.888167e-58 |
| MsG0380016513.01 | MsG0680034749.01 | 0.816189 | 6.288077e-52 | 4.425418e-49 |
| MsG0380016971.01 | MsG0680034749.01 | 0.813128 | 2.993834e-51 | 1.938534e-48 |
| MsG0380017330.01 | MsG0680034749.01 | 0.833089 | 6.514261e-56 | 7.424701e-53 |
| MsG0580026157.01 | MsG0680034749.01 | 0.828718 | 7.694930e-55 | 7.710440e-52 |
| MsG0280007790.01 | MsG0680034749.01 | 0.800638 | 1.312056e-48 | 6.140360e-46 |
| MsG0280007876.01 | MsG0680034749.01 | 0.806204 | 9.216779e-50 | 4.973023e-47 |
| MsG0280008134.01 | MsG0680034749.01 | 0.887101 | 1.917477e-72 | 1.406738e-68 |
| MsG0280008312.01 | MsG0680034749.01 | 0.837771 | 4.270810e-57 | 5.605522e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034749.01.T01 | MTR_1g023660 | 55.263 | 114 | 51 | 0 | 176 | 289 | 227 | 340 | 1.65e-45 | 157 |
| MsG0680034749.01.T01 | MTR_8g099780 | 32.411 | 253 | 164 | 4 | 40 | 289 | 64 | 312 | 3.78e-44 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034749.01.T01 | AT2G01930 | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 8.23e-95 | 281 |
| MsG0680034749.01.T01 | AT2G01930 | 51.163 | 301 | 117 | 10 | 1 | 289 | 1 | 283 | 8.23e-95 | 281 |
| MsG0680034749.01.T01 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.39e-88 | 265 |
| MsG0680034749.01.T01 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.39e-88 | 265 |
| MsG0680034749.01.T01 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.39e-88 | 265 |
| MsG0680034749.01.T01 | AT1G14685 | 50.847 | 295 | 123 | 8 | 1 | 289 | 1 | 279 | 3.39e-88 | 265 |
| MsG0680034749.01.T01 | AT1G68120 | 46.780 | 295 | 120 | 10 | 4 | 289 | 3 | 269 | 5.94e-77 | 235 |
| MsG0680034749.01.T01 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 5.98e-50 | 165 |
| MsG0680034749.01.T01 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 5.98e-50 | 165 |
| MsG0680034749.01.T01 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 82 | 226 | 5.98e-50 | 165 |
| MsG0680034749.01.T01 | AT2G35550 | 54.422 | 147 | 65 | 2 | 143 | 289 | 127 | 271 | 8.38e-50 | 166 |
| MsG0680034749.01.T01 | AT2G21240 | 32.453 | 265 | 164 | 5 | 28 | 289 | 44 | 296 | 9.65e-44 | 151 |
| MsG0680034749.01.T01 | AT2G21240 | 32.453 | 265 | 164 | 5 | 28 | 289 | 44 | 296 | 9.65e-44 | 151 |
| MsG0680034749.01.T01 | AT5G42520 | 56.075 | 107 | 46 | 1 | 184 | 289 | 176 | 282 | 5.29e-42 | 146 |
| MsG0680034749.01.T01 | AT5G42520 | 56.075 | 107 | 46 | 1 | 184 | 289 | 232 | 338 | 7.58e-42 | 147 |
| MsG0680034749.01.T01 | AT5G42520 | 56.075 | 107 | 46 | 1 | 184 | 289 | 236 | 342 | 1.00e-41 | 147 |
| MsG0680034749.01.T01 | AT4G38910 | 43.478 | 138 | 77 | 1 | 152 | 289 | 122 | 258 | 1.32e-41 | 144 |
| MsG0680034749.01.T01 | AT4G38910 | 43.478 | 138 | 77 | 1 | 152 | 289 | 147 | 283 | 1.79e-41 | 145 |
Find 97 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATCACCATCGGGAAAT+TGG | 0.178341 | 6:+93903176 | MsG0680034749.01.T01:CDS |
| CGATAGATTTGAGGACTTAT+TGG | 0.234611 | 6:+93903825 | MsG0680034749.01.T01:CDS |
| TGCAATTAACGGGATTGATT+TGG | 0.279573 | 6:+93903568 | MsG0680034749.01.T01:CDS |
| GATAGATTTGAGGACTTATT+GGG | 0.312732 | 6:+93903826 | MsG0680034749.01.T01:CDS |
| CCAACAAGTTTGTTACTATC+AGG | 0.343708 | 6:+93903861 | MsG0680034749.01.T01:CDS |
| ATTCCTGTTTGTTCTTGCAC+TGG | 0.347046 | 6:+93903608 | MsG0680034749.01.T01:CDS |
| CACCTCAACAATGTTATAGA+TGG | 0.355446 | 6:+93903633 | MsG0680034749.01.T01:CDS |
| ATGGACTTAACATAAGCAAT+TGG | 0.360767 | 6:+93903030 | MsG0680034749.01.T01:CDS |
| CCGGAAAAGCCGCCTTTGAT+TGG | 0.380482 | 6:+93903116 | MsG0680034749.01.T01:CDS |
| TTTCTAATCCGATAGATTTG+AGG | 0.399273 | 6:+93903816 | MsG0680034749.01.T01:CDS |
| CTTACCCTATGGATTATATG+AGG | 0.406292 | 6:+93903213 | MsG0680034749.01.T01:CDS |
| AATGATTCGACCATGTGAAT+TGG | 0.408906 | 6:+93903352 | MsG0680034749.01.T01:CDS |
| CATATCACCATCGGGAAATT+GGG | 0.409037 | 6:+93903177 | MsG0680034749.01.T01:CDS |
| CGAAATGCTGCGGTTATGTC+GGG | 0.411374 | 6:+93903143 | MsG0680034749.01.T01:CDS |
| TGGACTTAACATAAGCAATT+GGG | 0.420997 | 6:+93903031 | MsG0680034749.01.T01:CDS |
| CTACGGAAATTGCAATTAAC+GGG | 0.422090 | 6:+93903558 | MsG0680034749.01.T01:CDS |
| TTAGGAGACTTCGGCACCTT+CGG | 0.426454 | 6:-93903449 | None:intergenic |
| TCGACCATGTGAATTGGTTA+AGG | 0.427145 | 6:+93903358 | MsG0680034749.01.T01:CDS |
| ACTACGGAAATTGCAATTAA+CGG | 0.434305 | 6:+93903557 | MsG0680034749.01.T01:CDS |
| CCTGATAGTAACAAACTTGT+TGG | 0.444146 | 6:-93903861 | None:intergenic |
| CTATAACCTGGAGGGTTAGT+AGG | 0.446214 | 6:-93903290 | None:intergenic |
| TGATTCTTAAATGATGAAAC+AGG | 0.446858 | 6:-93903065 | None:intergenic |
| GCCTCAAACTACTTACCCTA+TGG | 0.455211 | 6:+93903202 | MsG0680034749.01.T01:CDS |
| CTCTTCGGCTTCTTTGCCTT+AGG | 0.455380 | 6:-93903467 | None:intergenic |
| TCGAAATGCTGCGGTTATGT+CGG | 0.458215 | 6:+93903142 | MsG0680034749.01.T01:CDS |
| ACCACAGGTGCTTCCTCCAT+TGG | 0.459398 | 6:-93903389 | None:intergenic |
| TAATTTAGTGTTGTAATGGA+TGG | 0.462352 | 6:+93903002 | None:intergenic |
| ATAGATGGGGCTCGGGTGGA+TGG | 0.464652 | 6:+93903648 | MsG0680034749.01.T01:CDS |
| TTCCTGTTTGTTCTTGCACT+GGG | 0.468493 | 6:+93903609 | MsG0680034749.01.T01:CDS |
| GTTGTAATGGATGGAGATAA+TGG | 0.478647 | 6:+93903011 | None:intergenic |
| ACAATGTTATAGATGGGGCT+CGG | 0.487220 | 6:+93903640 | MsG0680034749.01.T01:CDS |
| GGCACACGAGGTCCTCTCTT+CGG | 0.493154 | 6:-93903482 | None:intergenic |
| CCATTCACCTTCTCGACCAC+AGG | 0.494618 | 6:-93903404 | None:intergenic |
| ACAACTGATGCCATCGATGC+CGG | 0.499881 | 6:+93903097 | MsG0680034749.01.T01:CDS |
| TTCTTTGCCTTAGGAGACTT+CGG | 0.501514 | 6:-93903458 | None:intergenic |
| GTCCCAGTGCAAGAACAAAC+AGG | 0.501675 | 6:-93903611 | None:intergenic |
| GTGCAAGAACAAACAGGAAT+CGG | 0.503075 | 6:-93903605 | None:intergenic |
| GAAGGAGAATTCTCGTCCTT+CGG | 0.503811 | 6:-93903503 | None:intergenic |
| CAATGTTATAGATGGGGCTC+GGG | 0.507375 | 6:+93903641 | MsG0680034749.01.T01:CDS |
| CCTGTGGTCGAGAAGGTGAA+TGG | 0.509475 | 6:+93903404 | MsG0680034749.01.T01:CDS |
| ACCTCAACAATGTTATAGAT+GGG | 0.523017 | 6:+93903634 | MsG0680034749.01.T01:CDS |
| ATGATGAGCTGAAGATGTCT+CGG | 0.523848 | 6:-93903324 | None:intergenic |
| CCGCGTCGTTTAGTACTCAT+AGG | 0.528654 | 6:-93903713 | None:intergenic |
| CAATAAGTCCTCAAATCTAT+CGG | 0.528692 | 6:-93903824 | None:intergenic |
| GCATCCCTCATATAATCCAT+AGG | 0.528771 | 6:-93903218 | None:intergenic |
| GTCGAGAAGGTGAATGGAAC+TGG | 0.530658 | 6:+93903410 | MsG0680034749.01.T01:CDS |
| GAAGGACGAGAATTCTCCTT+CGG | 0.531353 | 6:+93903505 | MsG0680034749.01.T01:CDS |
| CTTGGTGTTCGTTGAACCGA+AGG | 0.532361 | 6:-93903521 | None:intergenic |
| TCCATAGGGTAAGTAGTTTG+AGG | 0.540334 | 6:-93903203 | None:intergenic |
| TGTTATAGATGGGGCTCGGG+TGG | 0.542239 | 6:+93903644 | MsG0680034749.01.T01:CDS |
| GCATTTCGACTTCCAATCAA+AGG | 0.543040 | 6:-93903128 | None:intergenic |
| TCATCATTTAAGAATCATCT+CGG | 0.544378 | 6:+93903071 | MsG0680034749.01.T01:CDS |
| TTCTCGTCCTTCGGCACACG+AGG | 0.552572 | 6:-93903494 | None:intergenic |
| TAACGGTGCATATCACCATC+GGG | 0.558932 | 6:+93903169 | MsG0680034749.01.T01:CDS |
| ATTAGAGAAACTTGCAGCCG+AGG | 0.559521 | 6:+93903784 | MsG0680034749.01.T01:CDS |
| CATCCCTCATATAATCCATA+GGG | 0.559663 | 6:-93903217 | None:intergenic |
| ATTAGAAAAGTTATAACCCT+CGG | 0.560267 | 6:-93903801 | None:intergenic |
| AGGACTTATTGGGCAAAACA+TGG | 0.561945 | 6:+93903836 | MsG0680034749.01.T01:CDS |
| ATGATACCTACTAACCCTCC+AGG | 0.562585 | 6:+93903284 | MsG0680034749.01.T01:CDS |
| GCGGTTATGTCGGGAACTAA+CGG | 0.570883 | 6:+93903152 | MsG0680034749.01.T01:CDS |
| GAGAGGACCTCGTGTGCCGA+AGG | 0.571472 | 6:+93903487 | MsG0680034749.01.T01:CDS |
| GCCGGAAGGAAAATGAGTAT+AGG | 0.573233 | 6:+93903746 | MsG0680034749.01.T01:CDS |
| TTAGAGAAACTTGCAGCCGA+GGG | 0.574547 | 6:+93903785 | MsG0680034749.01.T01:CDS |
| TGGATTATATGAGGGATGCA+TGG | 0.575577 | 6:+93903222 | MsG0680034749.01.T01:CDS |
| CGACGCGGTGCTAGAATAGC+CGG | 0.576753 | 6:+93903728 | MsG0680034749.01.T01:CDS |
| TGATGAGCTGAAGATGTCTC+GGG | 0.579222 | 6:-93903323 | None:intergenic |
| GGAAGCACCTGTGGTCGAGA+AGG | 0.588134 | 6:+93903397 | MsG0680034749.01.T01:CDS |
| GAAGGTGCCGAAGTCTCCTA+AGG | 0.590939 | 6:+93903451 | MsG0680034749.01.T01:CDS |
| TTACCCTATGGATTATATGA+GGG | 0.595783 | 6:+93903214 | MsG0680034749.01.T01:CDS |
| GGACTTAACATAAGCAATTG+GGG | 0.601047 | 6:+93903032 | MsG0680034749.01.T01:CDS |
| TTCGGTTCAACGAACACCAA+GGG | 0.601561 | 6:+93903523 | MsG0680034749.01.T01:CDS |
| CAAGTTTGTTACTATCAGGT+AGG | 0.604667 | 6:+93903865 | MsG0680034749.01.T01:CDS |
| GCCAATGGAGGAAGCACCTG+TGG | 0.607095 | 6:+93903388 | MsG0680034749.01.T01:CDS |
| CTAACGGTGCATATCACCAT+CGG | 0.608113 | 6:+93903168 | MsG0680034749.01.T01:CDS |
| AAGGGCACAAAAGAAAACTA+CGG | 0.609634 | 6:+93903541 | MsG0680034749.01.T01:CDS |
| CGTTTAGTACTCATAGGCAA+AGG | 0.610952 | 6:-93903707 | None:intergenic |
| ATGCATGGATTAGTAGTCAG+AGG | 0.611474 | 6:+93903237 | MsG0680034749.01.T01:CDS |
| GAGGCATCCCAATTTCCCGA+TGG | 0.615246 | 6:-93903184 | None:intergenic |
| AAGGCAAAGAAGCCGAAGAG+AGG | 0.622231 | 6:+93903470 | MsG0680034749.01.T01:CDS |
| CCCCATCTATAACATTGTTG+AGG | 0.623582 | 6:-93903635 | None:intergenic |
| TAAGAAGAGGCAAGGACCGA+AGG | 0.629324 | 6:+93903433 | MsG0680034749.01.T01:CDS |
| TACTAGTACTATAACCTGGA+GGG | 0.630649 | 6:-93903298 | None:intergenic |
| GGAATACTAGTACTATAACC+TGG | 0.630941 | 6:-93903302 | None:intergenic |
| TCTTCCTTAACCAATTCACA+TGG | 0.638004 | 6:-93903362 | None:intergenic |
| GGTTAAGGAAGAAATGCCAA+TGG | 0.642003 | 6:+93903373 | MsG0680034749.01.T01:CDS |
| TTTCGACTTCCAATCAAAGG+CGG | 0.642330 | 6:-93903125 | None:intergenic |
| TGCATGGATTAGTAGTCAGA+GGG | 0.642777 | 6:+93903238 | MsG0680034749.01.T01:CDS |
| TGAATGGAACTGGTAAGAAG+AGG | 0.650068 | 6:+93903420 | MsG0680034749.01.T01:CDS |
| GGAACTGGTAAGAAGAGGCA+AGG | 0.651851 | 6:+93903425 | MsG0680034749.01.T01:CDS |
| GATTGGAAGTCGAAATGCTG+CGG | 0.656562 | 6:+93903133 | MsG0680034749.01.T01:CDS |
| CCTCAACAATGTTATAGATG+GGG | 0.670226 | 6:+93903635 | MsG0680034749.01.T01:CDS |
| TAAGGAAGAAATGCCAATGG+AGG | 0.676077 | 6:+93903376 | MsG0680034749.01.T01:CDS |
| CTTCGGTTCAACGAACACCA+AGG | 0.677515 | 6:+93903522 | MsG0680034749.01.T01:CDS |
| ATACTAGTACTATAACCTGG+AGG | 0.700408 | 6:-93903299 | None:intergenic |
| GCAGTCTGCATGCTGCACAA+CGG | 0.723033 | 6:+93903670 | MsG0680034749.01.T01:CDS |
| GCGGTGCTAGAATAGCCGGA+AGG | 0.737428 | 6:+93903732 | MsG0680034749.01.T01:CDS |
| CCTATGAGTACTAAACGACG+CGG | 0.777544 | 6:+93903713 | MsG0680034749.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTAGAAAAGTTATAACCCT+CGG | - | Chr6:93903804-93903823 | None:intergenic | 25.0% |
| ! | TCATCATTTAAGAATCATCT+CGG | + | Chr6:93903071-93903090 | MsG0680034749.01.T01:CDS | 25.0% |
| ! | TGATTCTTAAATGATGAAAC+AGG | - | Chr6:93903068-93903087 | None:intergenic | 25.0% |
| ACCTCAACAATGTTATAGAT+GGG | + | Chr6:93903634-93903653 | MsG0680034749.01.T01:CDS | 30.0% | |
| ACTACGGAAATTGCAATTAA+CGG | + | Chr6:93903557-93903576 | MsG0680034749.01.T01:CDS | 30.0% | |
| ATGGACTTAACATAAGCAAT+TGG | + | Chr6:93903030-93903049 | MsG0680034749.01.T01:CDS | 30.0% | |
| CAATAAGTCCTCAAATCTAT+CGG | - | Chr6:93903827-93903846 | None:intergenic | 30.0% | |
| GATAGATTTGAGGACTTATT+GGG | + | Chr6:93903826-93903845 | MsG0680034749.01.T01:CDS | 30.0% | |
| TGGACTTAACATAAGCAATT+GGG | + | Chr6:93903031-93903050 | MsG0680034749.01.T01:CDS | 30.0% | |
| TTTCTAATCCGATAGATTTG+AGG | + | Chr6:93903816-93903835 | MsG0680034749.01.T01:CDS | 30.0% | |
| ! | TTACCCTATGGATTATATGA+GGG | + | Chr6:93903214-93903233 | MsG0680034749.01.T01:CDS | 30.0% |
| AATGATTCGACCATGTGAAT+TGG | + | Chr6:93903352-93903371 | MsG0680034749.01.T01:CDS | 35.0% | |
| ATACTAGTACTATAACCTGG+AGG | - | Chr6:93903302-93903321 | None:intergenic | 35.0% | |
| CACCTCAACAATGTTATAGA+TGG | + | Chr6:93903633-93903652 | MsG0680034749.01.T01:CDS | 35.0% | |
| CATCCCTCATATAATCCATA+GGG | - | Chr6:93903220-93903239 | None:intergenic | 35.0% | |
| CCTCAACAATGTTATAGATG+GGG | + | Chr6:93903635-93903654 | MsG0680034749.01.T01:CDS | 35.0% | |
| CCTGATAGTAACAAACTTGT+TGG | - | Chr6:93903864-93903883 | None:intergenic | 35.0% | |
| CGATAGATTTGAGGACTTAT+TGG | + | Chr6:93903825-93903844 | MsG0680034749.01.T01:CDS | 35.0% | |
| CTACGGAAATTGCAATTAAC+GGG | + | Chr6:93903558-93903577 | MsG0680034749.01.T01:CDS | 35.0% | |
| GGAATACTAGTACTATAACC+TGG | - | Chr6:93903305-93903324 | None:intergenic | 35.0% | |
| GGACTTAACATAAGCAATTG+GGG | + | Chr6:93903032-93903051 | MsG0680034749.01.T01:CDS | 35.0% | |
| TACTAGTACTATAACCTGGA+GGG | - | Chr6:93903301-93903320 | None:intergenic | 35.0% | |
| TCTTCCTTAACCAATTCACA+TGG | - | Chr6:93903365-93903384 | None:intergenic | 35.0% | |
| TGCAATTAACGGGATTGATT+TGG | + | Chr6:93903568-93903587 | MsG0680034749.01.T01:CDS | 35.0% | |
| ! | AAGGGCACAAAAGAAAACTA+CGG | + | Chr6:93903541-93903560 | MsG0680034749.01.T01:CDS | 35.0% |
| ! | CTTACCCTATGGATTATATG+AGG | + | Chr6:93903213-93903232 | MsG0680034749.01.T01:CDS | 35.0% |
| ! | TCCTATACTCATTTTCCTTC+CGG | - | Chr6:93903750-93903769 | None:intergenic | 35.0% |
| !! | CCAACAAGTTTGTTACTATC+AGG | + | Chr6:93903861-93903880 | MsG0680034749.01.T01:CDS | 35.0% |
| ACAATGTTATAGATGGGGCT+CGG | + | Chr6:93903640-93903659 | MsG0680034749.01.T01:CDS | 40.0% | |
| AGGACTTATTGGGCAAAACA+TGG | + | Chr6:93903836-93903855 | MsG0680034749.01.T01:CDS | 40.0% | |
| ATGATGAGCTGAAGATGTCT+CGG | - | Chr6:93903327-93903346 | None:intergenic | 40.0% | |
| ATTCCTGTTTGTTCTTGCAC+TGG | + | Chr6:93903608-93903627 | MsG0680034749.01.T01:CDS | 40.0% | |
| CATATCACCATCGGGAAATT+GGG | + | Chr6:93903177-93903196 | MsG0680034749.01.T01:CDS | 40.0% | |
| CCCCATCTATAACATTGTTG+AGG | - | Chr6:93903638-93903657 | None:intergenic | 40.0% | |
| CGTTTAGTACTCATAGGCAA+AGG | - | Chr6:93903710-93903729 | None:intergenic | 40.0% | |
| GCATCCCTCATATAATCCAT+AGG | - | Chr6:93903221-93903240 | None:intergenic | 40.0% | |
| GCATTTCGACTTCCAATCAA+AGG | - | Chr6:93903131-93903150 | None:intergenic | 40.0% | |
| GGTTAAGGAAGAAATGCCAA+TGG | + | Chr6:93903373-93903392 | MsG0680034749.01.T01:CDS | 40.0% | |
| GTGCAAGAACAAACAGGAAT+CGG | - | Chr6:93903608-93903627 | None:intergenic | 40.0% | |
| TAAGGAAGAAATGCCAATGG+AGG | + | Chr6:93903376-93903395 | MsG0680034749.01.T01:CDS | 40.0% | |
| TCCATAGGGTAAGTAGTTTG+AGG | - | Chr6:93903206-93903225 | None:intergenic | 40.0% | |
| TCGACCATGTGAATTGGTTA+AGG | + | Chr6:93903358-93903377 | MsG0680034749.01.T01:CDS | 40.0% | |
| TGAATGGAACTGGTAAGAAG+AGG | + | Chr6:93903420-93903439 | MsG0680034749.01.T01:CDS | 40.0% | |
| TGGATTATATGAGGGATGCA+TGG | + | Chr6:93903222-93903241 | MsG0680034749.01.T01:CDS | 40.0% | |
| TTCCTGTTTGTTCTTGCACT+GGG | + | Chr6:93903609-93903628 | MsG0680034749.01.T01:CDS | 40.0% | |
| TTCTTTGCCTTAGGAGACTT+CGG | - | Chr6:93903461-93903480 | None:intergenic | 40.0% | |
| TTTCGACTTCCAATCAAAGG+CGG | - | Chr6:93903128-93903147 | None:intergenic | 40.0% | |
| ! | GTAGTTTTCTTTTGTGCCCT+TGG | - | Chr6:93903542-93903561 | None:intergenic | 40.0% |
| !! | ATGCATGGATTAGTAGTCAG+AGG | + | Chr6:93903237-93903256 | MsG0680034749.01.T01:CDS | 40.0% |
| !! | TGCATGGATTAGTAGTCAGA+GGG | + | Chr6:93903238-93903257 | MsG0680034749.01.T01:CDS | 40.0% |
| ATGATACCTACTAACCCTCC+AGG | + | Chr6:93903284-93903303 | MsG0680034749.01.T01:CDS | 45.0% | |
| ATTAGAGAAACTTGCAGCCG+AGG | + | Chr6:93903784-93903803 | MsG0680034749.01.T01:CDS | 45.0% | |
| CAATGTTATAGATGGGGCTC+GGG | + | Chr6:93903641-93903660 | MsG0680034749.01.T01:CDS | 45.0% | |
| CCTATGAGTACTAAACGACG+CGG | + | Chr6:93903713-93903732 | MsG0680034749.01.T01:CDS | 45.0% | |
| CTAACGGTGCATATCACCAT+CGG | + | Chr6:93903168-93903187 | MsG0680034749.01.T01:CDS | 45.0% | |
| GAAGGACGAGAATTCTCCTT+CGG | + | Chr6:93903505-93903524 | MsG0680034749.01.T01:CDS | 45.0% | |
| GAAGGAGAATTCTCGTCCTT+CGG | - | Chr6:93903506-93903525 | None:intergenic | 45.0% | |
| GATTGGAAGTCGAAATGCTG+CGG | + | Chr6:93903133-93903152 | MsG0680034749.01.T01:CDS | 45.0% | |
| GCATATCACCATCGGGAAAT+TGG | + | Chr6:93903176-93903195 | MsG0680034749.01.T01:CDS | 45.0% | |
| GCCGGAAGGAAAATGAGTAT+AGG | + | Chr6:93903746-93903765 | MsG0680034749.01.T01:CDS | 45.0% | |
| GCCTCAAACTACTTACCCTA+TGG | + | Chr6:93903202-93903221 | MsG0680034749.01.T01:CDS | 45.0% | |
| TAACGGTGCATATCACCATC+GGG | + | Chr6:93903169-93903188 | MsG0680034749.01.T01:CDS | 45.0% | |
| TCGAAATGCTGCGGTTATGT+CGG | + | Chr6:93903142-93903161 | MsG0680034749.01.T01:CDS | 45.0% | |
| TGATGAGCTGAAGATGTCTC+GGG | - | Chr6:93903326-93903345 | None:intergenic | 45.0% | |
| TTAGAGAAACTTGCAGCCGA+GGG | + | Chr6:93903785-93903804 | MsG0680034749.01.T01:CDS | 45.0% | |
| TTCGGTTCAACGAACACCAA+GGG | + | Chr6:93903523-93903542 | MsG0680034749.01.T01:CDS | 45.0% | |
| ! | CTATAACCTGGAGGGTTAGT+AGG | - | Chr6:93903293-93903312 | None:intergenic | 45.0% |
| AAGGCAAAGAAGCCGAAGAG+AGG | + | Chr6:93903470-93903489 | MsG0680034749.01.T01:CDS | 50.0% | |
| ACAACTGATGCCATCGATGC+CGG | + | Chr6:93903097-93903116 | MsG0680034749.01.T01:CDS | 50.0% | |
| CCGCGTCGTTTAGTACTCAT+AGG | - | Chr6:93903716-93903735 | None:intergenic | 50.0% | |
| CGAAATGCTGCGGTTATGTC+GGG | + | Chr6:93903143-93903162 | MsG0680034749.01.T01:CDS | 50.0% | |
| CTCTTCGGCTTCTTTGCCTT+AGG | - | Chr6:93903470-93903489 | None:intergenic | 50.0% | |
| CTTCGGTTCAACGAACACCA+AGG | + | Chr6:93903522-93903541 | MsG0680034749.01.T01:CDS | 50.0% | |
| GCGGTTATGTCGGGAACTAA+CGG | + | Chr6:93903152-93903171 | MsG0680034749.01.T01:CDS | 50.0% | |
| GGAACTGGTAAGAAGAGGCA+AGG | + | Chr6:93903425-93903444 | MsG0680034749.01.T01:CDS | 50.0% | |
| GTCCCAGTGCAAGAACAAAC+AGG | - | Chr6:93903614-93903633 | None:intergenic | 50.0% | |
| GTCGAGAAGGTGAATGGAAC+TGG | + | Chr6:93903410-93903429 | MsG0680034749.01.T01:CDS | 50.0% | |
| TAAGAAGAGGCAAGGACCGA+AGG | + | Chr6:93903433-93903452 | MsG0680034749.01.T01:CDS | 50.0% | |
| TTAGGAGACTTCGGCACCTT+CGG | - | Chr6:93903452-93903471 | None:intergenic | 50.0% | |
| ! | CCAATCAAAGGCGGCTTTTC+CGG | - | Chr6:93903119-93903138 | None:intergenic | 50.0% |
| !! | CTTGGTGTTCGTTGAACCGA+AGG | - | Chr6:93903524-93903543 | None:intergenic | 50.0% |
| ACCACAGGTGCTTCCTCCAT+TGG | - | Chr6:93903392-93903411 | None:intergenic | 55.0% | |
| CCATTCACCTTCTCGACCAC+AGG | - | Chr6:93903407-93903426 | None:intergenic | 55.0% | |
| CCGGAAAAGCCGCCTTTGAT+TGG | + | Chr6:93903116-93903135 | MsG0680034749.01.T01:CDS | 55.0% | |
| CCTGTGGTCGAGAAGGTGAA+TGG | + | Chr6:93903404-93903423 | MsG0680034749.01.T01:CDS | 55.0% | |
| GCAGTCTGCATGCTGCACAA+CGG | + | Chr6:93903670-93903689 | MsG0680034749.01.T01:CDS | 55.0% | |
| TGTTATAGATGGGGCTCGGG+TGG | + | Chr6:93903644-93903663 | MsG0680034749.01.T01:CDS | 55.0% | |
| ! | GAGGCATCCCAATTTCCCGA+TGG | - | Chr6:93903187-93903206 | None:intergenic | 55.0% |
| !! | GAAGGTGCCGAAGTCTCCTA+AGG | + | Chr6:93903451-93903470 | MsG0680034749.01.T01:CDS | 55.0% |
| ATAGATGGGGCTCGGGTGGA+TGG | + | Chr6:93903648-93903667 | MsG0680034749.01.T01:CDS | 60.0% | |
| GGCACACGAGGTCCTCTCTT+CGG | - | Chr6:93903485-93903504 | None:intergenic | 60.0% | |
| TTCTCGTCCTTCGGCACACG+AGG | - | Chr6:93903497-93903516 | None:intergenic | 60.0% | |
| ! | CGACGCGGTGCTAGAATAGC+CGG | + | Chr6:93903728-93903747 | MsG0680034749.01.T01:CDS | 60.0% |
| ! | GCGGTGCTAGAATAGCCGGA+AGG | + | Chr6:93903732-93903751 | MsG0680034749.01.T01:CDS | 60.0% |
| !! | GCCAATGGAGGAAGCACCTG+TGG | + | Chr6:93903388-93903407 | MsG0680034749.01.T01:CDS | 60.0% |
| !! | GGAAGCACCTGTGGTCGAGA+AGG | + | Chr6:93903397-93903416 | MsG0680034749.01.T01:CDS | 60.0% |
| GAGAGGACCTCGTGTGCCGA+AGG | + | Chr6:93903487-93903506 | MsG0680034749.01.T01:CDS | 65.0% | |
| !! | GGCGGCTTTTCCGGCATCGA+TGG | - | Chr6:93903110-93903129 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 93903017 | 93903886 | 93903017 | ID=MsG0680034749.01;Name=MsG0680034749.01 |
| Chr6 | mRNA | 93903017 | 93903886 | 93903017 | ID=MsG0680034749.01.T01;Parent=MsG0680034749.01;Name=MsG0680034749.01.T01;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|289 |
| Chr6 | exon | 93903017 | 93903886 | 93903017 | ID=MsG0680034749.01.T01:exon:5886;Parent=MsG0680034749.01.T01 |
| Chr6 | CDS | 93903017 | 93903886 | 93903017 | ID=MsG0680034749.01.T01:cds;Parent=MsG0680034749.01.T01 |
| Gene Sequence |
| Protein sequence |
