AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004767.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004767.01.T01 MTR_1g086480 99.448 181 1 0 1 181 1 181 9.55e-135 374
MsG0180004767.01.T01 MTR_5g034130 98.895 181 2 0 1 181 1 181 2.74e-134 373
MsG0180004767.01.T01 MTR_5g034125 98.895 181 2 0 1 181 1 181 2.74e-134 373
MsG0180004767.01.T01 MTR_7g109960 99.444 180 1 0 1 180 1 180 3.41e-134 373
MsG0180004767.01.T01 MTR_6g005820 98.343 181 3 0 1 181 1 181 1.14e-133 371
MsG0180004767.01.T01 MTR_5g016540 86.188 181 25 0 1 181 1 181 2.21e-120 338
MsG0180004767.01.T01 MTR_4g128910 63.277 177 65 0 1 177 1 177 6.24e-84 246
MsG0180004767.01.T01 MTR_5g007810 61.582 177 68 0 1 177 1 177 8.14e-83 243
MsG0180004767.01.T01 MTR_4g077640 60.452 177 70 0 1 177 1 177 1.54e-80 238
MsG0180004767.01.T01 MTR_5g007820 54.839 186 82 1 1 184 1 186 1.05e-75 225
MsG0180004767.01.T01 MTR_1g076550 51.667 180 87 0 1 180 1 180 8.23e-67 202
MsG0180004767.01.T01 MTR_5g007840 42.396 217 80 2 1 184 1 205 3.52e-57 179
MsG0180004767.01.T01 MTR_8g077540 48.193 166 83 3 18 181 17 181 3.89e-50 160
MsG0180004767.01.T01 MTR_8g077540 48.193 166 83 3 18 181 43 207 7.95e-50 160
MsG0180004767.01.T01 MTR_2g022200 33.862 189 114 2 5 184 5 191 1.57e-37 129
MsG0180004767.01.T01 MTR_5g078090 34.659 176 112 2 1 173 1 176 4.21e-31 111
MsG0180004767.01.T01 MTR_5g015370 32.240 183 121 2 1 180 1 183 6.70e-30 108
MsG0180004767.01.T01 MTR_8g077540 51.020 98 46 2 18 114 17 113 2.02e-28 103
MsG0180004767.01.T01 MTR_4g026950 31.847 157 106 1 18 173 1 157 5.79e-26 97.8
MsG0180004767.01.T01 MTR_2g034640 31.638 177 105 2 15 177 18 192 1.25e-24 95.5
MsG0180004767.01.T01 MTR_7g112090 31.073 177 106 2 15 177 18 192 3.05e-24 94.4
MsG0180004767.01.T01 MTR_4g121860 31.638 177 105 2 15 177 18 192 8.75e-23 90.5
MsG0180004767.01.T01 MTR_1g062760 34.118 85 52 1 18 98 15 99 2.55e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004767.01.T01 AT5G14670 98.901 182 2 0 1 182 1 182 2.17e-134 374
MsG0180004767.01.T01 AT1G10630 98.343 181 3 0 1 181 1 181 1.54e-133 371
MsG0180004767.01.T01 AT1G10630 98.343 181 3 0 1 181 1 181 1.54e-133 371
MsG0180004767.01.T01 AT5G14670 98.343 181 3 0 1 181 1 181 3.21e-133 370
MsG0180004767.01.T01 AT5G14670 98.343 181 3 0 1 181 1 181 3.21e-133 370
MsG0180004767.01.T01 AT3G62290 98.343 181 3 0 1 181 1 181 3.28e-133 370
MsG0180004767.01.T01 AT3G62290 98.343 181 3 0 1 181 1 181 3.28e-133 370
MsG0180004767.01.T01 AT3G62290 98.343 181 3 0 1 181 1 181 3.28e-133 370
MsG0180004767.01.T01 AT1G70490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT1G70490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT1G70490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT1G70490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT1G70490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT1G70490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT1G23490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT1G70490 98.343 181 3 0 1 181 1 181 3.43e-133 370
MsG0180004767.01.T01 AT2G47170 98.343 181 3 0 1 181 1 181 4.76e-133 370
MsG0180004767.01.T01 AT2G47170 98.343 181 3 0 1 181 1 181 4.76e-133 370
MsG0180004767.01.T01 AT2G47170 98.343 181 3 0 1 181 1 181 4.76e-133 370
MsG0180004767.01.T01 AT2G15310 67.778 180 58 0 1 180 1 180 2.90e-91 265
MsG0180004767.01.T01 AT2G24765 62.147 177 67 0 1 177 1 177 1.90e-84 247
MsG0180004767.01.T01 AT5G17060 58.659 179 74 0 1 179 1 179 2.23e-81 239
MsG0180004767.01.T01 AT5G17060 58.659 179 74 0 1 179 1 179 2.23e-81 239
MsG0180004767.01.T01 AT3G03120 59.887 177 71 0 1 177 1 177 1.48e-80 238
MsG0180004767.01.T01 AT3G22950 51.913 183 88 0 1 183 1 183 3.29e-70 211
MsG0180004767.01.T01 AT3G22950 51.913 183 88 0 1 183 1 183 3.29e-70 211
MsG0180004767.01.T01 AT2G24765 64.844 128 45 0 1 128 1 128 1.86e-60 184
MsG0180004767.01.T01 AT3G03120 62.308 130 49 0 1 130 1 130 1.38e-59 182
MsG0180004767.01.T01 AT1G02430 48.936 188 82 5 1 176 1 186 8.95e-57 177
MsG0180004767.01.T01 AT1G02440 45.699 186 91 4 1 176 1 186 2.46e-55 174
MsG0180004767.01.T01 AT2G18390 48.193 166 83 3 18 181 17 181 1.77e-49 158
MsG0180004767.01.T01 AT1G02430 47.205 161 75 4 1 153 1 159 3.32e-45 147
MsG0180004767.01.T01 AT5G52210 33.155 187 118 1 5 184 5 191 3.07e-36 125
MsG0180004767.01.T01 AT5G52210 33.155 187 118 1 5 184 5 191 3.07e-36 125
MsG0180004767.01.T01 AT3G49870 33.333 183 119 2 1 180 1 183 2.00e-32 115
MsG0180004767.01.T01 AT5G67560 33.742 163 107 1 12 173 14 176 2.66e-31 112
MsG0180004767.01.T01 AT5G37680 33.523 176 114 2 1 173 1 176 2.27e-30 110
MsG0180004767.01.T01 AT3G49870 33.121 157 104 1 18 173 1 157 5.39e-29 105
MsG0180004767.01.T01 AT3G49860 32.530 166 111 1 16 180 10 175 2.43e-28 104
MsG0180004767.01.T01 AT1G02440 33.117 154 67 3 1 153 1 119 4.40e-26 97.1
MsG0180004767.01.T01 AT1G09180 32.961 179 104 2 13 177 16 192 3.22e-25 97.1
MsG0180004767.01.T01 AT3G62560 31.638 177 105 2 15 177 18 192 1.78e-24 95.1
MsG0180004767.01.T01 AT5G37680 32.812 128 86 0 46 173 2 129 5.46e-24 92.0
MsG0180004767.01.T01 AT4G02080 31.073 177 106 2 15 177 18 192 5.51e-24 93.6
MsG0180004767.01.T01 AT1G56330 31.638 177 105 2 15 177 18 192 5.63e-24 93.6

Find 59 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAGTCCTTGTGTATTT+TGG 0.168116 1:-82468869 None:intergenic
CATAGAGATTTATTAGTTAA+AGG 0.217116 1:+82469556 MsG0180004767.01.T01:three_prime_UTR
GATAAACACGTTACTCAATT+TGG 0.219430 1:+82467362 MsG0180004767.01.T01:five_prime_UTR
AAGTATACGCATCTCTTTCT+TGG 0.288003 1:-82467961 None:intergenic
GGATTCAGAAAAGTTGAAAA+TGG 0.318550 1:+82467902 MsG0180004767.01.T01:intron
TTTGGGCGGTGATTTGCTTC+AGG 0.353925 1:+82469533 MsG0180004767.01.T01:three_prime_UTR
TCAGCAGCATTCATAGCATT+TGG 0.364943 1:-82469217 None:intergenic
AGAACATCAGCTTCACTGTC+TGG 0.385102 1:+82468181 MsG0180004767.01.T01:CDS
GAAAGAGATGCGTATACTTA+TGG 0.386945 1:+82467965 MsG0180004767.01.T01:CDS
CAATTATGATCTCCAGCATC+TGG 0.404087 1:+82469603 MsG0180004767.01.T01:three_prime_UTR
GATTCAGAAAAGTTGAAAAT+GGG 0.407021 1:+82467903 MsG0180004767.01.T01:intron
ACAAGGAGAAGAGATCTTCT+TGG 0.411688 1:+82467460 MsG0180004767.01.T01:five_prime_UTR
ATTCTTTATAAGCTCAAGCT+TGG 0.418391 1:+82468017 MsG0180004767.01.T01:CDS
AATCATCTCTCTCTTCTTCA+AGG 0.421231 1:+82467488 MsG0180004767.01.T01:five_prime_UTR
AATTGAGTAACGTGTTTATC+CGG 0.433601 1:-82467359 None:intergenic
CAATTAACTTCACAATCAAA+AGG 0.441411 1:-82469763 None:intergenic
CAGAGCACATGTGCCACATC+TGG 0.447819 1:+82469386 MsG0180004767.01.T01:CDS
TTGGAGTTTCTCTCAACGTC+AGG 0.452967 1:-82467421 None:intergenic
TGTCTGGGATGTCGGAGGTC+AGG 0.455909 1:+82468197 MsG0180004767.01.T01:CDS
ACTCTCTCCGTCAGCGTCAC+TGG 0.468160 1:+82469263 MsG0180004767.01.T01:CDS
CATTCACGAAGCTGTTTAGC+CGG 0.473064 1:+82467931 MsG0180004767.01.T01:CDS
AGCTTCACTGTCTGGGATGT+CGG 0.473789 1:+82468189 MsG0180004767.01.T01:CDS
CAGATGTGGCACATGTGCTC+TGG 0.476593 1:-82469385 None:intergenic
AAGCTTGAGCTTATAAAGAA+TGG 0.497488 1:-82468015 None:intergenic
GTAAGATACATACCGATAGT+AGG 0.498973 1:-82468059 None:intergenic
CTCAAACAACATTGCAAACA+AGG 0.503713 1:+82469439 MsG0180004767.01.T01:CDS
AAGCTAGAGATGAGCTGCAC+AGG 0.506543 1:+82468928 MsG0180004767.01.T01:CDS
TCTCTTTCTTGGCAAATAGC+CGG 0.506749 1:-82467950 None:intergenic
TTGTGGTTGATAGCAATGAC+AGG 0.519491 1:+82468892 MsG0180004767.01.T01:CDS
GAACATCAGCTTCACTGTCT+GGG 0.522077 1:+82468182 MsG0180004767.01.T01:CDS
AATTAACTTCACAATCAAAA+GGG 0.535794 1:-82469762 None:intergenic
CAGGCAGGAAAACCAGATGC+TGG 0.540615 1:-82469615 None:intergenic
AGAACTGCAGTCTATTATTG+AGG 0.554874 1:+82469680 MsG0180004767.01.T01:three_prime_UTR
ATGGTAGGTCTCGATGCAGC+TGG 0.562008 1:+82467984 MsG0180004767.01.T01:CDS
GACTTTATGAAGGACTTGAC+TGG 0.563819 1:+82469414 MsG0180004767.01.T01:CDS
ATAAAGTCCTTCACCAGATG+TGG 0.566017 1:-82469399 None:intergenic
CGAGCAATGAAAATCTATGC+AGG 0.568538 1:-82469634 None:intergenic
CAATGAAAATCTATGCAGGC+AGG 0.573708 1:-82469630 None:intergenic
TCTGGTGAAGGACTTTATGA+AGG 0.585343 1:+82469404 MsG0180004767.01.T01:CDS
AGTAATGTCTCCACAGAGGA+CGG 0.585615 1:-82468845 None:intergenic
CCCTGTAGATCCGTCCTCTG+TGG 0.597050 1:+82468835 MsG0180004767.01.T01:intron
GTTACAACCATTCCTACTAT+CGG 0.597928 1:+82468047 MsG0180004767.01.T01:CDS
ATACATACCGATAGTAGGAA+TGG 0.605406 1:-82468054 None:intergenic
CTTGAGCTTATAAAGAATGG+TGG 0.605632 1:-82468012 None:intergenic
GCTGAGATAACTGATAAGCT+TGG 0.619937 1:+82469235 MsG0180004767.01.T01:CDS
TTCACTGTCTGGGATGTCGG+AGG 0.622588 1:+82468192 MsG0180004767.01.T01:CDS
GAGATGCGTATACTTATGGT+AGG 0.623901 1:+82467969 MsG0180004767.01.T01:CDS
TAGTTTACCAGTGACGCTGA+CGG 0.637651 1:-82469270 None:intergenic
ACATGTGCCACATCTGGTGA+AGG 0.638525 1:+82469392 MsG0180004767.01.T01:CDS
GGATGTCGGAGGTCAGGACA+AGG 0.643668 1:+82468203 MsG0180004767.01.T01:CDS
CATTACTTCCAAAATACACA+AGG 0.651419 1:+82468861 MsG0180004767.01.T01:CDS
TGTGGTTGATAGCAATGACA+GGG 0.656079 1:+82468893 MsG0180004767.01.T01:CDS
AGGGTTCAATGTGGAAACAG+TGG 0.658334 1:+82468152 MsG0180004767.01.T01:intron
CATCTCTAGCTTCAACAACA+CGG 0.660245 1:-82468917 None:intergenic
CAATGGGATTACAAAGACAC+CGG 0.663397 1:+82467340 None:intergenic
GTTGTTCTATAAATACGCGT+AGG 0.682859 1:+82467398 MsG0180004767.01.T01:five_prime_UTR
TGTATATGTAGGGTTCAATG+TGG 0.687704 1:+82468143 MsG0180004767.01.T01:intron
GCTGCACAGGATGTTGAATG+AGG 0.712176 1:+82468941 MsG0180004767.01.T01:CDS
TGGAAGTAATGTCTCCACAG+AGG 0.750469 1:-82468849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAACTTCACAATCAAAA+GGG - Chr1:82469765-82469784 None:intergenic 20.0%
!! ATTTCATTGATGTTATAACA+TGG + Chr1:82468292-82468311 MsG0180004767.01.T01:intron 20.0%
!! CATAGAGATTTATTAGTTAA+AGG + Chr1:82469556-82469575 MsG0180004767.01.T01:three_prime_UTR 20.0%
!! TATGATGTACTATAATCTTT+CGG + Chr1:82468713-82468732 MsG0180004767.01.T01:intron 20.0%
!! TCACTTATTCAACATATATT+TGG - Chr1:82469028-82469047 None:intergenic 20.0%
!!! AATGAAAGGTTGATTATTTA+TGG + Chr1:82468991-82469010 MsG0180004767.01.T01:intron 20.0%
!!! ACATATATTTTTCACATTTG+TGG + Chr1:82468470-82468489 MsG0180004767.01.T01:intron 20.0%
!!! ATTAGAACTGAAATTTTGAA+AGG - Chr1:82468371-82468390 None:intergenic 20.0%
!!! CATATATTTTTCACATTTGT+GGG + Chr1:82468471-82468490 MsG0180004767.01.T01:intron 20.0%
!!! CATGATTTTGATTTCAATTT+TGG + Chr1:82467710-82467729 MsG0180004767.01.T01:intron 20.0%
! AAAAAAAAATCACTGCACAT+TGG - Chr1:82468508-82468527 None:intergenic 25.0%
! AATAACGTAATATATGCAGA+TGG - Chr1:82467788-82467807 None:intergenic 25.0%
! AATAAGTGAAAATGAAAGGT+TGG + Chr1:82469039-82469058 MsG0180004767.01.T01:intron 25.0%
! AATGGATCATTGTATATGTA+GGG + Chr1:82468133-82468152 MsG0180004767.01.T01:intron 25.0%
! ATGATGTACTATAATCTTTC+GGG + Chr1:82468714-82468733 MsG0180004767.01.T01:intron 25.0%
! ATTATGGCTCATTGTATTAA+TGG + Chr1:82468115-82468134 MsG0180004767.01.T01:intron 25.0%
! CAATTAACTTCACAATCAAA+AGG - Chr1:82469766-82469785 None:intergenic 25.0%
! GATTCAGAAAAGTTGAAAAT+GGG + Chr1:82467903-82467922 MsG0180004767.01.T01:intron 25.0%
! GTATCTTACTATGTTTGTAT+TGG + Chr1:82468073-82468092 MsG0180004767.01.T01:intron 25.0%
! GTTGAATAAGTGAAAATGAA+AGG + Chr1:82469035-82469054 MsG0180004767.01.T01:intron 25.0%
! TATCATATGCATGTTATTAC+TGG + Chr1:82467662-82467681 MsG0180004767.01.T01:intron 25.0%
! TCACTCATTCAACATATATT+TGG - Chr1:82469086-82469105 None:intergenic 25.0%
! TGATGTTATAACATGGTAAT+TGG + Chr1:82468299-82468318 MsG0180004767.01.T01:intron 25.0%
! TTATAGTACATCATAACAAG+AGG - Chr1:82468708-82468727 None:intergenic 25.0%
! TTTGGATGCTTATAATACTT+TGG + Chr1:82469140-82469159 MsG0180004767.01.T01:intron 25.0%
!! AATGAAAGGTTGGTTATTTA+TGG + Chr1:82469049-82469068 MsG0180004767.01.T01:intron 25.0%
!! TAATGGATCATTGTATATGT+AGG + Chr1:82468132-82468151 MsG0180004767.01.T01:intron 25.0%
!! TATAGTTGTAATCTTTTCCA+TGG + Chr1:82468421-82468440 MsG0180004767.01.T01:intron 25.0%
!!! AAATCTTGTTTTACTGAACA+TGG + Chr1:82468743-82468762 MsG0180004767.01.T01:intron 25.0%
!!! AACTAATGCCTTTCTTTTTT+GGG + Chr1:82469516-82469535 MsG0180004767.01.T01:three_prime_UTR 25.0%
!!! GATTTGTTGCTATTGAAATT+TGG + Chr1:82467843-82467862 MsG0180004767.01.T01:intron 25.0%
!!! TAGATCTTTTTTACTCAACA+TGG + Chr1:82468790-82468809 MsG0180004767.01.T01:intron 25.0%
AAGCTTGAGCTTATAAAGAA+TGG - Chr1:82468018-82468037 None:intergenic 30.0%
AATGAGTGAAAATGAAAGGT+TGG + Chr1:82468981-82469000 MsG0180004767.01.T01:intron 30.0%
AATTGAGTAACGTGTTTATC+CGG - Chr1:82467362-82467381 None:intergenic 30.0%
ATTCTTTATAAGCTCAAGCT+TGG + Chr1:82468017-82468036 MsG0180004767.01.T01:CDS 30.0%
CATAATCATGATCACAGAAA+TGG - Chr1:82468101-82468120 None:intergenic 30.0%
CATTACTTCCAAAATACACA+AGG + Chr1:82468861-82468880 MsG0180004767.01.T01:CDS 30.0%
CATTTCTGTGATCATGATTA+TGG + Chr1:82468099-82468118 MsG0180004767.01.T01:intron 30.0%
GATAAACACGTTACTCAATT+TGG + Chr1:82467362-82467381 MsG0180004767.01.T01:five_prime_UTR 30.0%
GGATTCAGAAAAGTTGAAAA+TGG + Chr1:82467902-82467921 MsG0180004767.01.T01:intron 30.0%
GTTGAATGAGTGAAAATGAA+AGG + Chr1:82469093-82469112 MsG0180004767.01.T01:intron 30.0%
TGATGATAGTATTGTTTGTG+TGG + Chr1:82467881-82467900 MsG0180004767.01.T01:intron 30.0%
TGTAACAGAGAAAAAGAAGT+TGG - Chr1:82467443-82467462 None:intergenic 30.0%
! AAATGAGTCCTTGTGTATTT+TGG - Chr1:82468872-82468891 None:intergenic 30.0%
! ACTTCTTTTTCTCTGTTACA+AGG + Chr1:82467443-82467462 MsG0180004767.01.T01:five_prime_UTR 30.0%
! GAAAGGTTGGTTATTTATGT+GGG + Chr1:82469110-82469129 MsG0180004767.01.T01:intron 30.0%
! GAATAACTTTTCTGCTAACT+TGG + Chr1:82469470-82469489 MsG0180004767.01.T01:exon 30.0%
! TGAAAGGTTGGTTATTTATG+TGG + Chr1:82469051-82469070 MsG0180004767.01.T01:intron 30.0%
! TTTTCTCATTGCATCTTCTA+CGG + Chr1:82468230-82468249 MsG0180004767.01.T01:intron 30.0%
!! CAAAAAAGAAAGGCATTAGT+TGG - Chr1:82469517-82469536 None:intergenic 30.0%
!! TAAGAGTGTTGAATTCAAGA+AGG - Chr1:82468582-82468601 None:intergenic 30.0%
!!! CAACTAATGCCTTTCTTTTT+TGG + Chr1:82469515-82469534 MsG0180004767.01.T01:three_prime_UTR 30.0%
AAGTATACGCATCTCTTTCT+TGG - Chr1:82467964-82467983 None:intergenic 35.0%
AATCACCTACTCTAACTTTC+TGG + Chr1:82468628-82468647 MsG0180004767.01.T01:intron 35.0%
AATCATCTCTCTCTTCTTCA+AGG + Chr1:82467488-82467507 MsG0180004767.01.T01:five_prime_UTR 35.0%
AGAACTGCAGTCTATTATTG+AGG + Chr1:82469680-82469699 MsG0180004767.01.T01:three_prime_UTR 35.0%
AGGTCAAATGGAAGATAACT+TGG - Chr1:82468688-82468707 None:intergenic 35.0%
ATACATACCGATAGTAGGAA+TGG - Chr1:82468057-82468076 None:intergenic 35.0%
ATGCAGTGAAAAATCAGAGA+TGG - Chr1:82467607-82467626 None:intergenic 35.0%
ATTCAATCATGCAATTCCAC+CGG + Chr1:82467735-82467754 MsG0180004767.01.T01:intron 35.0%
CACATCTACATCTTAATCCA+TGG - Chr1:82468441-82468460 None:intergenic 35.0%
CATCATAACAAGAGGTCAAA+TGG - Chr1:82468700-82468719 None:intergenic 35.0%
CTCAAACAACATTGCAAACA+AGG + Chr1:82469439-82469458 MsG0180004767.01.T01:CDS 35.0%
CTTGAGCTTATAAAGAATGG+TGG - Chr1:82468015-82468034 None:intergenic 35.0%
GAAAGAGATGCGTATACTTA+TGG + Chr1:82467965-82467984 MsG0180004767.01.T01:CDS 35.0%
GATGCTTATAATACTTTGGC+AGG + Chr1:82469144-82469163 MsG0180004767.01.T01:intron 35.0%
GCTGAATGAGTGAAAATGAA+AGG + Chr1:82468977-82468996 MsG0180004767.01.T01:intron 35.0%
GGAAGAAAAGAGAAAAGAGA+AGG - Chr1:82467526-82467545 None:intergenic 35.0%
GGTCAAATGGAAGATAACTT+GGG - Chr1:82468687-82468706 None:intergenic 35.0%
GTAAGATACATACCGATAGT+AGG - Chr1:82468062-82468081 None:intergenic 35.0%
GTTACAACCATTCCTACTAT+CGG + Chr1:82468047-82468066 MsG0180004767.01.T01:CDS 35.0%
GTTGTTCTATAAATACGCGT+AGG + Chr1:82467398-82467417 MsG0180004767.01.T01:five_prime_UTR 35.0%
TATCTCCAGAAAGTTAGAGT+AGG - Chr1:82468636-82468655 None:intergenic 35.0%
TCACAAACATACTTGCTCAA+GGG - Chr1:82468334-82468353 None:intergenic 35.0%
TGTATATGTAGGGTTCAATG+TGG + Chr1:82468143-82468162 MsG0180004767.01.T01:intron 35.0%
TTCACAAACATACTTGCTCA+AGG - Chr1:82468335-82468354 None:intergenic 35.0%
! ATTTATGTGGGTCGTCATTT+TGG + Chr1:82469122-82469141 MsG0180004767.01.T01:intron 35.0%
!! TACACAAGGACTCATTTTTG+TGG + Chr1:82468875-82468894 MsG0180004767.01.T01:CDS 35.0%
!!! TAATGCCTTTCTTTTTTGGG+CGG + Chr1:82469519-82469538 MsG0180004767.01.T01:three_prime_UTR 35.0%
AATCACCGCCCAAAAAAGAA+AGG - Chr1:82469527-82469546 None:intergenic 40.0%
ACAAGGAGAAGAGATCTTCT+TGG + Chr1:82467460-82467479 MsG0180004767.01.T01:five_prime_UTR 40.0%
ATAAAGTCCTTCACCAGATG+TGG - Chr1:82469402-82469421 None:intergenic 40.0%
ATGACGGTGAGAATGAGTAA+TGG - Chr1:82469343-82469362 None:intergenic 40.0%
ATTACTCATTCTCACCGTCA+TGG + Chr1:82469342-82469361 MsG0180004767.01.T01:intron 40.0%
CAATGAAAATCTATGCAGGC+AGG - Chr1:82469633-82469652 None:intergenic 40.0%
CAATTATGATCTCCAGCATC+TGG + Chr1:82469603-82469622 MsG0180004767.01.T01:three_prime_UTR 40.0%
CCAGAAGAGATATACAGATC+TGG - Chr1:82467547-82467566 None:intergenic 40.0%
CCAGATCTGTATATCTCTTC+TGG + Chr1:82467544-82467563 MsG0180004767.01.T01:intron 40.0%
CGAGCAATGAAAATCTATGC+AGG - Chr1:82469637-82469656 None:intergenic 40.0%
CGTAACATGATCTACGAATC+CGG - Chr1:82467757-82467776 None:intergenic 40.0%
GAAGATAACTTGGGTCAAAG+GGG - Chr1:82468678-82468697 None:intergenic 40.0%
GACTTTATGAAGGACTTGAC+TGG + Chr1:82469414-82469433 MsG0180004767.01.T01:CDS 40.0%
GAGAAAAGAGAAGGAGAGAA+AGG - Chr1:82467517-82467536 None:intergenic 40.0%
GAGATGCGTATACTTATGGT+AGG + Chr1:82467969-82467988 MsG0180004767.01.T01:CDS 40.0%
GCTGAGATAACTGATAAGCT+TGG + Chr1:82469235-82469254 MsG0180004767.01.T01:CDS 40.0%
GGAAGATAACTTGGGTCAAA+GGG - Chr1:82468679-82468698 None:intergenic 40.0%
GTTAGAGTAGGTGATTGAGT+AGG - Chr1:82468624-82468643 None:intergenic 40.0%
TCAGCAGCATTCATAGCATT+TGG - Chr1:82469220-82469239 None:intergenic 40.0%
TCTCTTTCTTGGCAAATAGC+CGG - Chr1:82467953-82467972 None:intergenic 40.0%
TCTGGTGAAGGACTTTATGA+AGG + Chr1:82469404-82469423 MsG0180004767.01.T01:CDS 40.0%
TGGAAGATAACTTGGGTCAA+AGG - Chr1:82468680-82468699 None:intergenic 40.0%
TTCTACGGCGTGCTTATTTA+TGG + Chr1:82468245-82468264 MsG0180004767.01.T01:intron 40.0%
! CATCTCTAGCTTCAACAACA+CGG - Chr1:82468920-82468939 None:intergenic 40.0%
! GTAATGGAAGCAGGAAGATA+AGG - Chr1:82469327-82469346 None:intergenic 40.0%
! TGAGAATGAGTAATGGAAGC+AGG - Chr1:82469336-82469355 None:intergenic 40.0%
!! TGTGGTTGATAGCAATGACA+GGG + Chr1:82468893-82468912 MsG0180004767.01.T01:CDS 40.0%
!! TTGTGGTTGATAGCAATGAC+AGG + Chr1:82468892-82468911 MsG0180004767.01.T01:CDS 40.0%
AACATGATCTACGAATCCGG+TGG - Chr1:82467754-82467773 None:intergenic 45.0%
AGAACATCAGCTTCACTGTC+TGG + Chr1:82468181-82468200 MsG0180004767.01.T01:CDS 45.0%
AGGGTTCAATGTGGAAACAG+TGG + Chr1:82468152-82468171 MsG0180004767.01.T01:intron 45.0%
AGTAATGTCTCCACAGAGGA+CGG - Chr1:82468848-82468867 None:intergenic 45.0%
CATTCACGAAGCTGTTTAGC+CGG + Chr1:82467931-82467950 MsG0180004767.01.T01:CDS 45.0%
CTGCATGTACAGATCCATGA+CGG - Chr1:82469359-82469378 None:intergenic 45.0%
GAACATCAGCTTCACTGTCT+GGG + Chr1:82468182-82468201 MsG0180004767.01.T01:CDS 45.0%
TAGTTTACCAGTGACGCTGA+CGG - Chr1:82469273-82469292 None:intergenic 45.0%
TGATCTCACGATATGCGATG+TGG - Chr1:82467690-82467709 None:intergenic 45.0%
TGGAAGCAGGAAGATAAGGA+AGG - Chr1:82469323-82469342 None:intergenic 45.0%
TGGAAGTAATGTCTCCACAG+AGG - Chr1:82468852-82468871 None:intergenic 45.0%
TTGGAGTTTCTCTCAACGTC+AGG - Chr1:82467424-82467443 None:intergenic 45.0%
AAGCTAGAGATGAGCTGCAC+AGG + Chr1:82468928-82468947 MsG0180004767.01.T01:CDS 50.0%
ACATGTGCCACATCTGGTGA+AGG + Chr1:82469392-82469411 MsG0180004767.01.T01:CDS 50.0%
CGTCATGGATCTGTACATGC+AGG + Chr1:82469357-82469376 MsG0180004767.01.T01:intron 50.0%
GCTGCACAGGATGTTGAATG+AGG + Chr1:82468941-82468960 MsG0180004767.01.T01:CDS 50.0%
! AGCTTCACTGTCTGGGATGT+CGG + Chr1:82468189-82468208 MsG0180004767.01.T01:CDS 50.0%
!! TTTGGGCGGTGATTTGCTTC+AGG + Chr1:82469533-82469552 MsG0180004767.01.T01:three_prime_UTR 50.0%
ATGGTAGGTCTCGATGCAGC+TGG + Chr1:82467984-82468003 MsG0180004767.01.T01:CDS 55.0%
CAGAGCACATGTGCCACATC+TGG + Chr1:82469386-82469405 MsG0180004767.01.T01:CDS 55.0%
CAGATGTGGCACATGTGCTC+TGG - Chr1:82469388-82469407 None:intergenic 55.0%
CAGGCAGGAAAACCAGATGC+TGG - Chr1:82469618-82469637 None:intergenic 55.0%
CCACAGAGGACGGATCTACA+GGG - Chr1:82468838-82468857 None:intergenic 55.0%
TCCACAGAGGACGGATCTAC+AGG - Chr1:82468839-82468858 None:intergenic 55.0%
! TTCACTGTCTGGGATGTCGG+AGG + Chr1:82468192-82468211 MsG0180004767.01.T01:CDS 55.0%
ACTCTCTCCGTCAGCGTCAC+TGG + Chr1:82469263-82469282 MsG0180004767.01.T01:CDS 60.0%
CCCTGTAGATCCGTCCTCTG+TGG + Chr1:82468835-82468854 MsG0180004767.01.T01:intron 60.0%
GGATGTCGGAGGTCAGGACA+AGG + Chr1:82468203-82468222 MsG0180004767.01.T01:CDS 60.0%
! TGTCTGGGATGTCGGAGGTC+AGG + Chr1:82468197-82468216 MsG0180004767.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 82467347 82469790 82467347 ID=MsG0180004767.01;Name=MsG0180004767.01
Chr1 mRNA 82467347 82469790 82467347 ID=MsG0180004767.01.T01;Parent=MsG0180004767.01;Name=MsG0180004767.01.T01;_AED=0.30;_eAED=0.30;_QI=174|1|1|1|0.8|0.66|6|315|184
Chr1 exon 82467347 82467509 82467347 ID=MsG0180004767.01.T01:exon:27279;Parent=MsG0180004767.01.T01
Chr1 exon 82467910 82468068 82467910 ID=MsG0180004767.01.T01:exon:27280;Parent=MsG0180004767.01.T01
Chr1 exon 82468154 82468224 82468154 ID=MsG0180004767.01.T01:exon:27281;Parent=MsG0180004767.01.T01
Chr1 exon 82468843 82468962 82468843 ID=MsG0180004767.01.T01:exon:27282;Parent=MsG0180004767.01.T01
Chr1 exon 82469166 82469284 82469166 ID=MsG0180004767.01.T01:exon:27283;Parent=MsG0180004767.01.T01
Chr1 exon 82469379 82469790 82469379 ID=MsG0180004767.01.T01:exon:27284;Parent=MsG0180004767.01.T01
Chr1 five_prime_UTR 82467347 82467509 82467347 ID=MsG0180004767.01.T01:five_prime_utr;Parent=MsG0180004767.01.T01
Chr1 five_prime_UTR 82467910 82467920 82467910 ID=MsG0180004767.01.T01:five_prime_utr;Parent=MsG0180004767.01.T01
Chr1 CDS 82467921 82468068 82467921 ID=MsG0180004767.01.T01:cds;Parent=MsG0180004767.01.T01
Chr1 CDS 82468154 82468224 82468154 ID=MsG0180004767.01.T01:cds;Parent=MsG0180004767.01.T01
Chr1 CDS 82468843 82468962 82468843 ID=MsG0180004767.01.T01:cds;Parent=MsG0180004767.01.T01
Chr1 CDS 82469166 82469284 82469166 ID=MsG0180004767.01.T01:cds;Parent=MsG0180004767.01.T01
Chr1 CDS 82469379 82469475 82469379 ID=MsG0180004767.01.T01:cds;Parent=MsG0180004767.01.T01
Chr1 three_prime_UTR 82469476 82469790 82469476 ID=MsG0180004767.01.T01:three_prime_utr;Parent=MsG0180004767.01.T01
Gene Sequence

>MsG0180004767.01.T01

ATGGGATTGTCATTCACGAAGCTGTTTAGCCGGCTATTTGCCAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTCTTTATAAGCTCAAGCTTGGAGAGATCGTTACAACCATTCCTACTATCGGGTTCAATGTGGAAACAGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACACAAGGACTCATTTTTGTGGTTGATAGCAATGACAGGGACCGTGTTGTTGAAGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAATTGAGAGATGCAGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGTTAATACTGAATAA

Protein sequence

>MsG0180004767.01.T01

MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVNTE*