AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000580.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000580.01.T01 MTR_1g012990 50.000 320 55 8 1 218 1 317 1.03e-82 249
MsG0180000580.01.T01 MTR_7g069430 50.314 318 55 8 1 218 1 315 4.77e-81 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000580.01.T01 AT3G15460 59.854 137 22 1 115 218 178 314 8.68e-51 167
MsG0180000580.01.T01 AT3G15460 68.067 119 31 3 1 118 1 113 4.24e-45 152
MsG0180000580.01.T01 AT1G52930 66.387 119 37 2 1 118 1 117 4.93e-44 150
MsG0180000580.01.T01 AT1G52930 59.124 137 23 1 115 218 182 318 5.54e-44 150

Find 43 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGTTGATGACCATATA+TGG 0.275985 1:-8080147 MsG0180000580.01.T01:CDS
GCTCTAGGCGTATTGTTTAC+AGG 0.279178 1:-8082216 MsG0180000580.01.T01:intron
GAGACCAGTGAGGACCCTTT+TGG 0.316595 1:-8082335 MsG0180000580.01.T01:CDS
GGTAATTTCGGAACCATATA+TGG 0.326418 1:+8080134 None:intergenic
AAACACAAACCTGGTAATTT+CGG 0.347713 1:+8080122 None:intergenic
TTCTCTTTGTTCCTGAATAC+AGG 0.355373 1:+8082253 None:intergenic
ATGGTGCTTCACCTGTATTC+AGG 0.357859 1:-8082264 MsG0180000580.01.T01:CDS
GGAAAGGCTTGGCCTTTCTA+TGG 0.363818 1:+8080191 None:intergenic
GCTTCTGCCTCATTGCAAAA+AGG 0.366733 1:-8081683 MsG0180000580.01.T01:CDS
AGGGTCCTCACTGGTCTCTC+TGG 0.383639 1:+8082340 None:intergenic
CCGACATTTGATGTTGAACT+TGG 0.401652 1:-8081710 MsG0180000580.01.T01:CDS
AGCTTTGCAGAAGAAGAAAA+AGG 0.403828 1:-8079111 MsG0180000580.01.T01:CDS
CAGGAACAAAGAGAAAGTTT+TGG 0.404050 1:-8082245 MsG0180000580.01.T01:CDS
AGCTGTGGCTGTGCCCAAAA+AGG 0.410300 1:-8082374 MsG0180000580.01.T01:CDS
CACATATCTGCAAACTCATC+AGG 0.414305 1:+8079017 None:intergenic
TGAGAATGAAGTTGAAGTAA+AGG 0.422450 1:-8082290 MsG0180000580.01.T01:CDS
TTGGCCTTTCTATGGTCCTT+CGG 0.429083 1:+8080199 None:intergenic
GAGCTCAACAAGCTCGTTCA+AGG 0.438472 1:+8081624 None:intergenic
GGCTGGAACATTTGCAAAGA+AGG 0.442018 1:-8079090 MsG0180000580.01.T01:CDS
TCTTATCCTTCCATCCCAAA+AGG 0.448553 1:+8082320 None:intergenic
GCATGAGATGGCCAATCCTC+TGG 0.463080 1:-8079042 MsG0180000580.01.T01:CDS
CTCATCAGGCTCCAGAGGAT+TGG 0.500537 1:+8079031 None:intergenic
TATATGGTTCCGAAATTACC+AGG 0.519157 1:-8080131 MsG0180000580.01.T01:intron
CTTATCCTTCCATCCCAAAA+GGG 0.530204 1:+8082321 None:intergenic
GAAGTTGAAGTAAAGGAGAA+TGG 0.531680 1:-8082283 MsG0180000580.01.T01:CDS
TGATAAAATGACATTGATTG+AGG 0.544457 1:-8079213 MsG0180000580.01.T01:intron
CATCCCAAAAGGGTCCTCAC+TGG 0.551306 1:+8082331 None:intergenic
GAAGAGAAAACGAAGCGAAA+AGG 0.560289 1:-8082401 MsG0180000580.01.T01:CDS
GCAAACTCATCAGGCTCCAG+AGG 0.583650 1:+8079026 None:intergenic
AAGGAGGAAAATGCATGAGA+TGG 0.589573 1:-8079054 MsG0180000580.01.T01:CDS
GTTGAATCGAAAGAAACTAA+AGG 0.591875 1:-8081652 MsG0180000580.01.T01:CDS
AACACCGAAGGACCATAGAA+AGG 0.600443 1:-8080203 MsG0180000580.01.T01:CDS
CTGATGAGTTTGCAGATATG+TGG 0.604261 1:-8079016 MsG0180000580.01.T01:CDS
AACATGGTCATGGAAAGGCT+TGG 0.604292 1:+8080180 None:intergenic
AAGCGAAAAGGCTGAAGCTG+TGG 0.609947 1:-8082389 MsG0180000580.01.T01:CDS
AGAAGGTCAAAGCAAAGACA+AGG 0.616949 1:-8079073 MsG0180000580.01.T01:CDS
AATTTGTCTGACTCATTGTG+AGG 0.622655 1:+8079251 None:intergenic
AGGTCAAAGCAAAGACAAGG+AGG 0.640567 1:-8079070 MsG0180000580.01.T01:CDS
CCAAGTTCAACATCAAATGT+CGG 0.645758 1:+8081710 None:intergenic
CCAGATATTTGAAACACCGA+AGG 0.677611 1:-8080215 MsG0180000580.01.T01:intron
CTCAACAAGCTCGTTCAAGG+TGG 0.686995 1:+8081627 None:intergenic
TTGCTCCAGAGAGACCAGTG+AGG 0.749614 1:-8082345 MsG0180000580.01.T01:CDS
GAGTCAGACAAATTACCCCG+AGG 0.769107 1:-8079242 MsG0180000580.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAACAAAATATATTT+GGG + Chr1:8079237-8079256 None:intergenic 10.0%
!! CAAATACAACAAAATATATT+TGG + Chr1:8079238-8079257 None:intergenic 15.0%
!! CATTATTTATATTTATCTAC+TGG + Chr1:8079539-8079558 None:intergenic 15.0%
!!! ATAACCAATATAGTTATTTT+TGG + Chr1:8082250-8082269 None:intergenic 15.0%
!!! TATTATTTTTTATGACATCA+AGG - Chr1:8079843-8079862 MsG0180000580.01.T01:intron 15.0%
!! AAGTCTATAAATGTTATGTT+TGG - Chr1:8080948-8080967 MsG0180000580.01.T01:intron 20.0%
!! AATACATAGAAAAACCAATT+TGG + Chr1:8080158-8080177 None:intergenic 20.0%
!! AATACTATATAATCATAGCA+AGG + Chr1:8080463-8080482 None:intergenic 20.0%
!! AATTTAAACTGAGTAGAATT+TGG - Chr1:8080988-8081007 MsG0180000580.01.T01:intron 20.0%
!! ATACATAGAAAAACCAATTT+GGG + Chr1:8080157-8080176 None:intergenic 20.0%
!! ATTGATCATAAACTTATTAC+AGG - Chr1:8079678-8079697 MsG0180000580.01.T01:intron 20.0%
!! ATTTAAACTGAGTAGAATTT+GGG - Chr1:8080989-8081008 MsG0180000580.01.T01:intron 20.0%
!! CAGATTAAATTAATGTCAAA+TGG - Chr1:8079383-8079402 MsG0180000580.01.T01:intron 20.0%
!! CTAACTAAAAATTTAACAGA+CGG + Chr1:8080385-8080404 None:intergenic 20.0%
!! CTATGATTATATAGTATTCT+AGG - Chr1:8080465-8080484 MsG0180000580.01.T01:intron 20.0%
!! GAAAATTCATTGTTTGTTTA+TGG - Chr1:8079925-8079944 MsG0180000580.01.T01:intron 20.0%
!! TAAAAAATAGAATTCAGAAC+TGG + Chr1:8080500-8080519 None:intergenic 20.0%
!! TAAAAGAGAAACTAGTAAAA+TGG + Chr1:8080553-8080572 None:intergenic 20.0%
!! TAACTAAAAATTTAACAGAC+GGG + Chr1:8080384-8080403 None:intergenic 20.0%
!! TACATAATAATAGTATCATG+TGG + Chr1:8081775-8081794 None:intergenic 20.0%
!! TCTACCAAAAATAACTATAT+TGG - Chr1:8082243-8082262 MsG0180000580.01.T01:CDS 20.0%
!! TTCACTCAATTCAAAAATTA+TGG + Chr1:8081482-8081501 None:intergenic 20.0%
!!! CAGTTTACTTATTTTAAATC+TGG - Chr1:8080182-8080201 MsG0180000580.01.T01:CDS 20.0%
!!! CGACACTTTAAAATTTAAAA+TGG + Chr1:8080108-8080127 None:intergenic 20.0%
!!! GGTTTATTAGTTTTTGAATA+TGG - Chr1:8079654-8079673 MsG0180000580.01.T01:intron 20.0%
!!! GTAATATGATTGTTTTACTA+TGG - Chr1:8081716-8081735 MsG0180000580.01.T01:CDS 20.0%
!!! TATAATTATGCCAATTGTTT+TGG - Chr1:8081452-8081471 MsG0180000580.01.T01:intron 20.0%
!!! TCATGATATCATATTTCTAT+TGG + Chr1:8081640-8081659 None:intergenic 20.0%
! AACAACTTAACTAAGTTGTT+AGG + Chr1:8079312-8079331 None:intergenic 25.0%
! AACTAATAAACCGCAATAAA+AGG + Chr1:8079646-8079665 None:intergenic 25.0%
! ACTTATTCATGCAAAGAAAA+TGG - Chr1:8081892-8081911 MsG0180000580.01.T01:intron 25.0%
! AGGAAACTGAAAATAGTTTA+TGG - Chr1:8079458-8079477 MsG0180000580.01.T01:intron 25.0%
! ATAACCAAAATTAAGTTCAC+TGG + Chr1:8081963-8081982 None:intergenic 25.0%
! CAATTGAGAAAACAAAAACA+TGG + Chr1:8081252-8081271 None:intergenic 25.0%
! CTAATGCAAAATGTTATTGT+TGG - Chr1:8080004-8080023 MsG0180000580.01.T01:intron 25.0%
! CTGAGTTATGTATTTGAATA+GGG - Chr1:8081061-8081080 MsG0180000580.01.T01:intron 25.0%
! GTTGTATTCATAAACTATCT+TGG - Chr1:8079424-8079443 MsG0180000580.01.T01:intron 25.0%
! TATAATCATAGCAAGGAAAT+TGG + Chr1:8080456-8080475 None:intergenic 25.0%
! TCAATAAAACCATCTTAGTT+TGG - Chr1:8080772-8080791 MsG0180000580.01.T01:intron 25.0%
! TCTATTCTATTTGTGACATT+TGG - Chr1:8080268-8080287 MsG0180000580.01.T01:intron 25.0%
! TGAGTTATGTATTTGAATAG+GGG - Chr1:8081062-8081081 MsG0180000580.01.T01:intron 25.0%
! TTAAATGGAAAATGTTGTCT+CGG + Chr1:8080211-8080230 None:intergenic 25.0%
! TTGCAAAGGATCTAAATAAT+TGG - Chr1:8081318-8081337 MsG0180000580.01.T01:intron 25.0%
! TTTGATGAAAATGTCAAAAG+AGG + Chr1:8080646-8080665 None:intergenic 25.0%
!! AAAACTTCTTCCTTTTATTG+CGG - Chr1:8079633-8079652 MsG0180000580.01.T01:intron 25.0%
!! AGTTAAGTTGTTATGTTGTA+AGG - Chr1:8079320-8079339 MsG0180000580.01.T01:intron 25.0%
!! GTTAAGTTGTTATGTTGTAA+GGG - Chr1:8079321-8079340 MsG0180000580.01.T01:intron 25.0%
!! TAATCCAGTGAACTTAATTT+TGG - Chr1:8081956-8081975 MsG0180000580.01.T01:intron 25.0%
!! TGATAAAATGACATTGATTG+AGG - Chr1:8082200-8082219 MsG0180000580.01.T01:intron 25.0%
!!! ATTGTTTTACTATGGTTACA+TGG - Chr1:8081724-8081743 MsG0180000580.01.T01:intron 25.0%
!!! CAAAATATATTTGGGTTTTG+TGG + Chr1:8079229-8079248 None:intergenic 25.0%
!!! CAATCAATGTCATTTTATCA+AGG + Chr1:8082200-8082219 None:intergenic 25.0%
!!! GAGTTTGGATTTGTTTATTT+TGG - Chr1:8079277-8079296 MsG0180000580.01.T01:intron 25.0%
!!! GGTTATTTTACAATGTATAG+AGG - Chr1:8081977-8081996 MsG0180000580.01.T01:intron 25.0%
!!! GTTAAATTTTTAGTTAGTGC+CGG - Chr1:8080388-8080407 MsG0180000580.01.T01:intron 25.0%
!!! GTTGATAGTATATAAGGTTT+TGG + Chr1:8081690-8081709 None:intergenic 25.0%
!!! TAAACAATGCTATTTTATGC+TGG - Chr1:8082011-8082030 MsG0180000580.01.T01:intron 25.0%
!!! TGTTTTGGATTCAAAAGTTA+AGG - Chr1:8080744-8080763 MsG0180000580.01.T01:intron 25.0%
!!! TTCTTCGTGTTTATTTTTTG+AGG - Chr1:8079820-8079839 MsG0180000580.01.T01:intron 25.0%
!!! TTCTTCGTTGATAGTATATA+AGG + Chr1:8081696-8081715 None:intergenic 25.0%
AAACACAAACCTGGTAATTT+CGG + Chr1:8081294-8081313 None:intergenic 30.0%
AAACTATCTTGGAGAACTTA+TGG - Chr1:8079435-8079454 MsG0180000580.01.T01:intron 30.0%
AATAAGTCAACAATCACATG+TGG + Chr1:8081879-8081898 None:intergenic 30.0%
AGAAAACAAAAACATGGTCA+TGG + Chr1:8081246-8081265 None:intergenic 30.0%
ATAGAAAAACCAATTTGGGA+GGG + Chr1:8080153-8080172 None:intergenic 30.0%
ATGAAAATGTCAAAAGAGGA+CGG + Chr1:8080642-8080661 None:intergenic 30.0%
CAAACAGATGAGAATATTAC+CGG + Chr1:8080410-8080429 None:intergenic 30.0%
CCTATTCAAATACATAACTC+AGG + Chr1:8081063-8081082 None:intergenic 30.0%
CCTGAGTTATGTATTTGAAT+AGG - Chr1:8081060-8081079 MsG0180000580.01.T01:intron 30.0%
GGATCTACAACAACATAAAA+AGG + Chr1:8082281-8082300 None:intergenic 30.0%
GTTGAATCGAAAGAAACTAA+AGG - Chr1:8079761-8079780 MsG0180000580.01.T01:intron 30.0%
GTTTAAACTTCAAAATCCGT+TGG - Chr1:8081375-8081394 MsG0180000580.01.T01:intron 30.0%
TCATTGCAAAAAGGATAACA+AGG - Chr1:8079739-8079758 MsG0180000580.01.T01:intron 30.0%
TCTGCATGAGAATAAAAATG+TGG + Chr1:8082134-8082153 None:intergenic 30.0%
TGAGAATGAAGTTGAAGTAA+AGG - Chr1:8079123-8079142 MsG0180000580.01.T01:intron 30.0%
TGTTGAAAACAACAAACCAA+CGG + Chr1:8081394-8081413 None:intergenic 30.0%
TTATAGACTTCTCAAGTCAA+CGG + Chr1:8080938-8080957 None:intergenic 30.0%
TTATGGCTAACCAAAACAAT+TGG + Chr1:8081465-8081484 None:intergenic 30.0%
! AACATTGCTGATGGATAAAT+TGG - Chr1:8081539-8081558 MsG0180000580.01.T01:intron 30.0%
! ACATTGCTGATGGATAAATT+GGG - Chr1:8081540-8081559 MsG0180000580.01.T01:intron 30.0%
! ATAAAACCATCTTAGTTTGG+TGG - Chr1:8080775-8080794 MsG0180000580.01.T01:intron 30.0%
! GTTTGTGTTTTCATTTGCAA+AGG - Chr1:8081304-8081323 MsG0180000580.01.T01:intron 30.0%
! TTGTTATCCTTTTTGCAATG+AGG + Chr1:8079740-8079759 None:intergenic 30.0%
! TTTTCCATTTAATCTCGAGT+TGG - Chr1:8080219-8080238 MsG0180000580.01.T01:intron 30.0%
!! CAATTGTTGATGACCATATA+TGG - Chr1:8081266-8081285 MsG0180000580.01.T01:intron 30.0%
!! CTCATCTGTTTGTTATCTTA+AGG - Chr1:8080418-8080437 MsG0180000580.01.T01:intron 30.0%
!! TTCACAATTTTCTCTGGTTT+TGG - Chr1:8081029-8081048 MsG0180000580.01.T01:intron 30.0%
!!! ACTTGCATTTTTTGTGAATG+TGG - Chr1:8082037-8082056 MsG0180000580.01.T01:intron 30.0%
!!! ATCTCTTTCCTTTTTTGTGA+TGG - Chr1:8080042-8080061 MsG0180000580.01.T01:intron 30.0%
!!! GTGCTTTTTTCTTTCTTTCT+TGG - Chr1:8081111-8081130 MsG0180000580.01.T01:intron 30.0%
AAAAATAAGCGCACGTATCT+TGG - Chr1:8081428-8081447 MsG0180000580.01.T01:intron 35.0%
AACCAGAGAAAATTGTGAAC+AGG + Chr1:8081028-8081047 None:intergenic 35.0%
AACTCCAACTCGAGATTAAA+TGG + Chr1:8080226-8080245 None:intergenic 35.0%
AATTTGTCTGACTCATTGTG+AGG + Chr1:8082165-8082184 None:intergenic 35.0%
ACAAAAACATGGTCATGGAA+AGG + Chr1:8081241-8081260 None:intergenic 35.0%
AGAAACTAGTAAAATGGCCT+CGG + Chr1:8080547-8080566 None:intergenic 35.0%
AGCAATGTTAGCAAAGAAAG+GGG + Chr1:8081528-8081547 None:intergenic 35.0%
AGCTTTGCAGAAGAAGAAAA+AGG - Chr1:8082302-8082321 MsG0180000580.01.T01:CDS 35.0%
AGGCAAAAGATCTTTATCTC+TGG - Chr1:8080338-8080357 MsG0180000580.01.T01:intron 35.0%
CAGCAATGTTAGCAAAGAAA+GGG + Chr1:8081529-8081548 None:intergenic 35.0%
CATAGAAAAACCAATTTGGG+AGG + Chr1:8080154-8080173 None:intergenic 35.0%
CCAAGTTCAACATCAAATGT+CGG + Chr1:8079706-8079725 None:intergenic 35.0%
GAAGTTGAAGTAAAGGAGAA+TGG - Chr1:8079130-8079149 MsG0180000580.01.T01:intron 35.0%
GATGTGATCCATCACAAAAA+AGG + Chr1:8080053-8080072 None:intergenic 35.0%
GCAAAGAAAATGGATCTTCA+GGG - Chr1:8081902-8081921 MsG0180000580.01.T01:intron 35.0%
GCATATCTTAAACACCATGA+CGG - Chr1:8081851-8081870 MsG0180000580.01.T01:intron 35.0%
GGTAATTTCGGAACCATATA+TGG + Chr1:8081282-8081301 None:intergenic 35.0%
TAAACACTTGTGAGACTGTT+TGG + Chr1:8079514-8079533 None:intergenic 35.0%
TAGAAAAACCAATTTGGGAG+GGG + Chr1:8080152-8080171 None:intergenic 35.0%
TATATGGTTCCGAAATTACC+AGG - Chr1:8081282-8081301 MsG0180000580.01.T01:intron 35.0%
TATGTATTTGAATAGGGGTG+TGG - Chr1:8081067-8081086 MsG0180000580.01.T01:intron 35.0%
TCAGCAATGTTAGCAAAGAA+AGG + Chr1:8081530-8081549 None:intergenic 35.0%
TGAAAATGTCAAAAGAGGAC+GGG + Chr1:8080641-8080660 None:intergenic 35.0%
TGCAAAGAAAATGGATCTTC+AGG - Chr1:8081901-8081920 MsG0180000580.01.T01:intron 35.0%
TGCAAATGAAAACACAAACC+TGG + Chr1:8081303-8081322 None:intergenic 35.0%
TGCATACTGAAAATTGCTGA+AGG - Chr1:8080678-8080697 MsG0180000580.01.T01:intron 35.0%
TGTGAACAGGAATAAATGCT+TGG + Chr1:8081015-8081034 None:intergenic 35.0%
TTCTCTTTGTTCCTGAATAC+AGG + Chr1:8079163-8079182 None:intergenic 35.0%
TTCTTTGCTAACATTGCTGA+TGG - Chr1:8081530-8081549 MsG0180000580.01.T01:intron 35.0%
! AGTTCTTTTACTGCACACAA+AGG + Chr1:8079576-8079595 None:intergenic 35.0%
! CAGGAACAAAGAGAAAGTTT+TGG - Chr1:8079168-8079187 MsG0180000580.01.T01:intron 35.0%
! GTTCTTTTACTGCACACAAA+GGG + Chr1:8079575-8079594 None:intergenic 35.0%
! TACTCTTCTATGCACTGTTT+TGG - Chr1:8080729-8080748 MsG0180000580.01.T01:intron 35.0%
! TCATTTTATCAAGGCTTCCT+CGG + Chr1:8082191-8082210 None:intergenic 35.0%
! TTCCTGTTCACAATTTTCTC+TGG - Chr1:8081023-8081042 MsG0180000580.01.T01:intron 35.0%
! TTTTCTTCTTCTGCAAAGCT+CGG + Chr1:8082302-8082321 None:intergenic 35.0%
!!! AAGTTTTGGTTACTTGCTCT+AGG - Chr1:8079182-8079201 MsG0180000580.01.T01:intron 35.0%
!!! GTTTGTGCTTGTTTTGAGTT+TGG - Chr1:8079262-8079281 MsG0180000580.01.T01:CDS 35.0%
AAGGAGGAAAATGCATGAGA+TGG - Chr1:8082359-8082378 MsG0180000580.01.T01:CDS 40.0%
ACTTGCTCGAGATTAAGAAC+TGG + Chr1:8080249-8080268 None:intergenic 40.0%
AGAAGGTCAAAGCAAAGACA+AGG - Chr1:8082340-8082359 MsG0180000580.01.T01:CDS 40.0%
ATGGAGGAATTGAAGCTTAC+TGG - Chr1:8080598-8080617 MsG0180000580.01.T01:intron 40.0%
CACATATCTGCAAACTCATC+AGG + Chr1:8082399-8082418 None:intergenic 40.0%
CCGACATTTGATGTTGAACT+TGG - Chr1:8079703-8079722 MsG0180000580.01.T01:intron 40.0%
CTATCTTGGAGAACTTATGG+AGG - Chr1:8079438-8079457 MsG0180000580.01.T01:intron 40.0%
CTGAAATTCGCATACACAGA+AGG + Chr1:8080311-8080330 None:intergenic 40.0%
CTGATGAGTTTGCAGATATG+TGG - Chr1:8082397-8082416 MsG0180000580.01.T01:CDS 40.0%
CTTATCCTTCCATCCCAAAA+GGG + Chr1:8079095-8079114 None:intergenic 40.0%
GAAGAGAAAACGAAGCGAAA+AGG - Chr1:8079012-8079031 MsG0180000580.01.T01:CDS 40.0%
GAGATGCTGTTACAGGTATT+TGG - Chr1:8080700-8080719 MsG0180000580.01.T01:intron 40.0%
TACATCGTCTACACTTGTCT+AGG - Chr1:8081797-8081816 MsG0180000580.01.T01:intron 40.0%
TCTTATCCTTCCATCCCAAA+AGG + Chr1:8079096-8079115 None:intergenic 40.0%
TGGAGGAATTGAAGCTTACT+GGG - Chr1:8080599-8080618 MsG0180000580.01.T01:intron 40.0%
TTGCAGAAGAAGAAAAAGGC+TGG - Chr1:8082306-8082325 MsG0180000580.01.T01:CDS 40.0%
! AAAGCACCACCAAACTAAGA+TGG + Chr1:8080784-8080803 None:intergenic 40.0%
! ATTTTATCAAGGCTTCCTCG+GGG + Chr1:8082189-8082208 None:intergenic 40.0%
! CATTTTATCAAGGCTTCCTC+GGG + Chr1:8082190-8082209 None:intergenic 40.0%
! CCAGATATTTGAAACACCGA+AGG - Chr1:8081198-8081217 MsG0180000580.01.T01:intron 40.0%
! GGAGCAACATCTTCCTTTTT+GGG + Chr1:8079055-8079074 None:intergenic 40.0%
! TGGAGCAACATCTTCCTTTT+TGG + Chr1:8079056-8079075 None:intergenic 40.0%
!! ATCTTAGTTTGGTGGTGCTT+TGG - Chr1:8080783-8080802 MsG0180000580.01.T01:intron 40.0%
!! CCTTCGGTGTTTCAAATATC+TGG + Chr1:8081201-8081220 None:intergenic 40.0%
!! TCTTAGTTTGGTGGTGCTTT+GGG - Chr1:8080784-8080803 MsG0180000580.01.T01:intron 40.0%
AAATTTAACAGACGGGCCGT+TGG + Chr1:8080377-8080396 None:intergenic 45.0%
AACACCGAAGGACCATAGAA+AGG - Chr1:8081210-8081229 MsG0180000580.01.T01:intron 45.0%
AACATGGTCATGGAAAGGCT+TGG + Chr1:8081236-8081255 None:intergenic 45.0%
AATTCCTCCATTGTGTGCAC+TGG + Chr1:8080589-8080608 None:intergenic 45.0%
AATTTAACAGACGGGCCGTT+GGG + Chr1:8080376-8080395 None:intergenic 45.0%
AGGTCAAAGCAAAGACAAGG+AGG - Chr1:8082343-8082362 MsG0180000580.01.T01:CDS 45.0%
ATGCGAATTTCAGTGCAGGA+AGG - Chr1:8080318-8080337 MsG0180000580.01.T01:intron 45.0%
ATGGTGCTTCACCTGTATTC+AGG - Chr1:8079149-8079168 MsG0180000580.01.T01:intron 45.0%
CAATTTGGGAGGGGAAACAA+AGG + Chr1:8080143-8080162 None:intergenic 45.0%
CTTACTGGGAACCACCTAAA+AGG - Chr1:8080613-8080632 MsG0180000580.01.T01:intron 45.0%
GCTTCTGCCTCATTGCAAAA+AGG - Chr1:8079730-8079749 MsG0180000580.01.T01:intron 45.0%
GGCTGGAACATTTGCAAAGA+AGG - Chr1:8082323-8082342 MsG0180000580.01.T01:CDS 45.0%
GTGTATGCGAATTTCAGTGC+AGG - Chr1:8080314-8080333 MsG0180000580.01.T01:intron 45.0%
TGGATGACAAAATGCCCCAA+CGG - Chr1:8080358-8080377 MsG0180000580.01.T01:intron 45.0%
! CTTTGTTTCCCCTCCCAAAT+TGG - Chr1:8080141-8080160 MsG0180000580.01.T01:CDS 45.0%
! GCTCTAGGCGTATTGTTTAC+AGG - Chr1:8079197-8079216 MsG0180000580.01.T01:intron 45.0%
! TTGGCCTTTCTATGGTCCTT+CGG + Chr1:8081217-8081236 None:intergenic 45.0%
!! CTTAGTTTGGTGGTGCTTTG+GGG - Chr1:8080785-8080804 MsG0180000580.01.T01:intron 45.0%
AAGCGAAAAGGCTGAAGCTG+TGG - Chr1:8079024-8079043 MsG0180000580.01.T01:CDS 50.0%
AATCACATGTGGCACCGTCA+TGG + Chr1:8081868-8081887 None:intergenic 50.0%
ATTTAACAGACGGGCCGTTG+GGG + Chr1:8080375-8080394 None:intergenic 50.0%
CTCAACAAGCTCGTTCAAGG+TGG + Chr1:8079789-8079808 None:intergenic 50.0%
CTGCTTTCCAGTGCACACAA+TGG - Chr1:8080579-8080598 MsG0180000580.01.T01:intron 50.0%
CTTTCCAGTGCACACAATGG+AGG - Chr1:8080582-8080601 MsG0180000580.01.T01:intron 50.0%
GAGCTCAACAAGCTCGTTCA+AGG + Chr1:8079792-8079811 None:intergenic 50.0%
GAGTCAGACAAATTACCCCG+AGG - Chr1:8082171-8082190 MsG0180000580.01.T01:intron 50.0%
GCTGAAGGAGATGCTGTTAC+AGG - Chr1:8080693-8080712 MsG0180000580.01.T01:intron 50.0%
TGTGCACTGGAAAGCAGTGA+AGG + Chr1:8080576-8080595 None:intergenic 50.0%
! AAAGAGGACGGGAGCCTTTT+AGG + Chr1:8080630-8080649 None:intergenic 50.0%
! AGACCAGTGAGGACCCTTTT+GGG - Chr1:8079079-8079098 MsG0180000580.01.T01:CDS 50.0%
! CTGCACACAAAGGGCTTGTT+TGG + Chr1:8079566-8079585 None:intergenic 50.0%
! GGAAAGGCTTGGCCTTTCTA+TGG + Chr1:8081225-8081244 None:intergenic 50.0%
ACCGTCTCTCTTTCTCTCCG+AGG - Chr1:8080527-8080546 MsG0180000580.01.T01:intron 55.0%
AGCTGTGGCTGTGCCCAAAA+AGG - Chr1:8079039-8079058 MsG0180000580.01.T01:CDS 55.0%
CATCCCAAAAGGGTCCTCAC+TGG + Chr1:8079085-8079104 None:intergenic 55.0%
CTCATCAGGCTCCAGAGGAT+TGG + Chr1:8082385-8082404 None:intergenic 55.0%
GCAAACTCATCAGGCTCCAG+AGG + Chr1:8082390-8082409 None:intergenic 55.0%
GCATGAGATGGCCAATCCTC+TGG - Chr1:8082371-8082390 MsG0180000580.01.T01:CDS 55.0%
GCCTCGGAGAGAAAGAGAGA+CGG + Chr1:8080531-8080550 None:intergenic 55.0%
TTGCTCCAGAGAGACCAGTG+AGG - Chr1:8079068-8079087 MsG0180000580.01.T01:CDS 55.0%
! GAGACCAGTGAGGACCCTTT+TGG - Chr1:8079078-8079097 MsG0180000580.01.T01:CDS 55.0%
!! CAGTGAGGACCCTTTTGGGA+TGG - Chr1:8079083-8079102 MsG0180000580.01.T01:CDS 55.0%
!!! GAGGACCCTTTTGGGATGGA+AGG - Chr1:8079087-8079106 MsG0180000580.01.T01:CDS 55.0%
! AGGGTCCTCACTGGTCTCTC+TGG + Chr1:8079076-8079095 None:intergenic 60.0%
! GAGGACGGGAGCCTTTTAGG+TGG + Chr1:8080627-8080646 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 8079007 8082428 8079007 ID=MsG0180000580.01;Name=MsG0180000580.01
Chr1 mRNA 8079007 8082428 8079007 ID=MsG0180000580.01.T01;Parent=MsG0180000580.01;Name=MsG0180000580.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|5|0|218
Chr1 exon 8082217 8082428 8082217 ID=MsG0180000580.01.T01:exon:2587;Parent=MsG0180000580.01.T01
Chr1 exon 8081594 8081735 8081594 ID=MsG0180000580.01.T01:exon:2588;Parent=MsG0180000580.01.T01
Chr1 exon 8080132 8080233 8080132 ID=MsG0180000580.01.T01:exon:2589;Parent=MsG0180000580.01.T01
Chr1 exon 8079214 8079282 8079214 ID=MsG0180000580.01.T01:exon:2590;Parent=MsG0180000580.01.T01
Chr1 exon 8079007 8079138 8079007 ID=MsG0180000580.01.T01:exon:2591;Parent=MsG0180000580.01.T01
Chr1 CDS 8082217 8082428 8082217 ID=MsG0180000580.01.T01:cds;Parent=MsG0180000580.01.T01
Chr1 CDS 8081594 8081735 8081594 ID=MsG0180000580.01.T01:cds;Parent=MsG0180000580.01.T01
Chr1 CDS 8080132 8080233 8080132 ID=MsG0180000580.01.T01:cds;Parent=MsG0180000580.01.T01
Chr1 CDS 8079214 8079282 8079214 ID=MsG0180000580.01.T01:cds;Parent=MsG0180000580.01.T01
Chr1 CDS 8079007 8079138 8079007 ID=MsG0180000580.01.T01:cds;Parent=MsG0180000580.01.T01
Gene Sequence

>MsG0180000580.01.T01

ATGGGGAAGAGAAAACGAAGCGAAAAGGCTGAAGCTGTGGCTGTGCCCAAAAAGGAAGATGTTGCTCCAGAGAGACCAGTGAGGACCCTTTTGGGATGGAAGGATAAGAATGAAAATGAGAATGAAGTTGAAGTAAAGGAGAATGGTGCTTCACCTGTATTCAGGAACAAAGAGAAAGTTTTGGTTACTTGCTCTAGGCGTATTGTTTACAGGTACCGACATTTGATGTTGAACTTGGTATCGCTTCTGCCTCATTGCAAAAAGGATAACAAGGTTGAATCGAAAGAAACTAAAGGCGCCACCTTGAACGAGCTTGTTGAGCTCAAAAACTATTCTTCGTGTTTATTTTTTGAGATATTTGAAACACCGAAGGACCATAGAAAGGCCAAGCCTTTCCATGACCATGTTTTTGTTTTCTCAATTGTTGATGACCATATATGGTTCCGAAATTACCAGATCTCTGTTCCTCACAATGAGTCAGACAAATTACCCCGAGGAAGCCTTGATAAAATGACATTGATTGAGATCCGAGCTTTGCAGAAGAAGAAAAAGGCTGGAACATTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGGCCAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTAA

Protein sequence

>MsG0180000580.01.T01

MGKRKRSEKAEAVAVPKKEDVAPERPVRTLLGWKDKNENENEVEVKENGASPVFRNKEKVLVTCSRRIVYRYRHLMLNLVSLLPHCKKDNKVESKETKGATLNELVELKNYSSCLFFEIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGSLDKMTLIEIRALQKKKKAGTFAKKVKAKTRRKMHEMANPLEPDEFADMWKD*