AlfalfaGEDB | MsG0780040125.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040125.01

KEGG: K03265
GO: GO:0003747 GO:0005737 GO:0006415
PFAM: PF03463 PF03464 PF03465

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040125.01.T01	XP_003624559.1	98.853	436	4	1	1	436	1	435	0	885

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040125.01.T01	P35614	91.514	436	36	1	1	436	1	435	0	828

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040125.01.T01	G7KYC6	98.853	436	4	1	1	436	1	435	0.0	885

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0780040125.01	0.841096	5.846806e-58	8.499089e-55
MsG0080047825.01	MsG0780040125.01	0.800958	1.128888e-48	5.326444e-46
MsG0080048058.01	MsG0780040125.01	0.832175	1.098276e-55	1.217981e-52
MsG0080048178.01	MsG0780040125.01	0.809237	2.089477e-50	1.220300e-47
MsG0080048383.01	MsG0780040125.01	0.853196	2.802832e-61	6.007183e-58
MsG0080048687.01	MsG0780040125.01	0.821939	3.091848e-53	2.551237e-50
MsG0080048765.01	MsG0780040125.01	0.842036	3.303296e-58	4.945182e-55
MsG0080048770.01	MsG0780040125.01	0.822287	2.568233e-53	2.140462e-50
MsG0080048784.01	MsG0780040125.01	0.807696	4.455666e-50	2.498335e-47
MsG0080048830.01	MsG0780040125.01	0.815880	7.369166e-52	5.142342e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040125.01.T01	MTR_7g084860	98.853	436	4	1	1	436	1	435	0.0	885
MsG0780040125.01.T01	MTR_6g478120	90.115	435	42	1	1	434	1	435	0.0	822
MsG0780040125.01.T01	MTR_4g103720	85.315	429	62	1	1	428	1	429	0.0	770
MsG0780040125.01.T01	MTR_6g478090	65.714	245	62	1	190	434	4	226	5.56e-104	308
MsG0780040125.01.T01	MTR_4g103730	79.618	157	29	1	130	286	6	159	2.08e-84	256
MsG0780040125.01.T01	MTR_6g081000	62.745	153	56	1	131	283	4	155	1.30e-58	189
MsG0780040125.01.T01	MTR_7g109660	73.529	68	15	2	34	99	16	82	1.05e-23	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780040125.01.T01	AT3G26618	91.514	436	36	1	1	436	1	435	828
MsG0780040125.01.T01	AT1G12920	90.741	432	39	1	5	436	4	434	820
MsG0780040125.01.T01	AT5G47880	86.713	429	53	1	5	429	6	434	779
MsG0780040125.01.T01	AT5G47880	86.713	429	53	1	5	429	6	434	779

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Find 87 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATATTTACCAGTCTCT+TGG	0.438527	7:+73322588	None:intergenic
AAAGGACTGGAAGCTGCAAG+AGG	0.664338	7:-73323415	MsG0780040125.01.T01:CDS
AACCTCCAAATCTGCAGATG+TGG	0.562932	7:+73322391	None:intergenic
AACGTGGTTGATGTCTCGTA+TGG	0.621452	7:-73322719	MsG0780040125.01.T01:CDS
AAGATGTTGGGAGATGAATT+TGG	0.306796	7:-73323331	MsG0780040125.01.T01:CDS
AATCCAAATATGCACTTAAT+CGG	0.359874	7:+73322169	None:intergenic
AATGGATTGGTTCTTTATAC+CGG	0.484935	7:-73323208	MsG0780040125.01.T01:CDS
ACACGAGATATTTGATCACG+TGG	0.654304	7:+73323358	None:intergenic
ACATCAAGAGTAGGGTAAAC+CGG	0.459780	7:-73323297	MsG0780040125.01.T01:CDS
ACATTAGGCTGACTAGTAGC+AGG	0.499450	7:+73322833	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATATTTACCAGTCTCT+TGG	+	Chr7:73323071-73323090	None:intergenic	30.0%
CAGACAAGAATATTGAGATA+TGG	-	Chr7:73322200-73322219	MsG0780040125.01.T01:CDS	30.0%
GAGACTGGTAAATATGTTTA+CGG	-	Chr7:73323072-73323091	MsG0780040125.01.T01:CDS	30.0%
GAGGTTGAAACTATATAACA+AGG	-	Chr7:73322417-73322436	MsG0780040125.01.T01:CDS	30.0%
GTATAAAGAACCAATCCATT+TGG	+	Chr7:73322448-73322467	None:intergenic	30.0%
AAAAACGACACAATTACGTC+AGG	-	Chr7:73322764-73322783	MsG0780040125.01.T01:CDS	35.0%
AAGATGTTGGGAGATGAATT+TGG	-	Chr7:73322325-73322344	MsG0780040125.01.T01:CDS	35.0%
ACTCATTGTATGGGAGAATT+TGG	-	Chr7:73323140-73323159	MsG0780040125.01.T01:CDS	35.0%
ATTCAAGAGAAACGCTTGAT+AGG	-	Chr7:73323024-73323043	MsG0780040125.01.T01:CDS	35.0%
ATTCTTGTCTGATTCACCAT+CGG	+	Chr7:73322191-73322210	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	73322184	73323494	73322184	ID=MsG0780040125.01;Name=MsG0780040125.01
Chr7	mRNA	73322184	73323494	73322184	ID=MsG0780040125.01.T01;Parent=MsG0780040125.01;Name=MsG0780040125.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|436
Chr7	exon	73322184	73323494	73322184	ID=MsG0780040125.01.T01:exon:14454;Parent=MsG0780040125.01.T01
Chr7	CDS	73322184	73323494	73322184	ID=MsG0780040125.01.T01:cds;Parent=MsG0780040125.01.T01

Gene Sequence

>MsG0780040125.01.T01

ATGGCCGATGGTGAATCAGACAAGAATATTGAGATATGGAAGATCAAAAAGTTGATCAAAGGACTGGAAGCTGCAAGAGGTAATGGTACTAGTATGATTTCTCTGATAATGCCTCCACGTGATCAAATATCTCGTGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAACATCAAGAGTAGGGTAAACCGGCAATCAGTGCTTGGAGCCATTACTTCTGCTCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGATTGGTTCTTTATACCGGTACCATTCTCACTGAGGACGGCAAGGAAAAGAAGGTGACATTTGATTTTGAACCTTTCAAACCAATCAATGCATCACTTTATCTCTGCGACAACAAATTTCACACAGAAGCTCTAAATGAACTTCTAGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAATGGAACCCTTTTCGGGACATTAAGTGGAAATACTCGCGAGGTGCTTCATAAATTTACTGTTGATCTACCAAAGAAACATGGTAGAGGAGGACAGTCAGCTTTGCGTTTTGCTCGTCTCCGGATGGAAAAACGACACAATTACGTCAGGAAGACTGCAGAACTTGCCACTCAGTTTTACATCAACCCTGCTACTAGTCAGCCTAATGTTGCTGGACTCATACTGGCTGGTTCAGCTGATTTCAAGACTGAGCTGAGTCAATCAGATATGTTTGATCCTCGTTTGCAAGCAAAAATATTGAACGTGGTTGATGTCTCGTATGGTGGGGAAAATGGCTTTAATCAAGCTATTGAATTATCTGCAGAGATTCTATCTAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGAAAATACTTTGAAGAGATAAGCCAAGAGACTGGTAAATATGTTTACGGAGTTGATGACACATTGAAGGCTCTAGAAATGGGTGCGGTTGAAACACTCATTGTATGGGAGAATTTGGATATTACTAGGTATGTGCTGAAAAATGCTACCACTGGTGAGATTGTAATAAAGCATTTGAAGAAGGGACAAGAAAGTGATCAAAGCCACTTCCGCGATGCGGCCACATCTGCAGATTTGGAGGTTCAGGAGAAGATGCCATTACTTGAGTGGTTTGCGAATGAGTACAAAAGATTTGGATGCTCGCTGGAATTCGTGACCAACAAATCTCAAGAAGGGTCGCAGTTTTGCAGAGGGTTTGGTGGTATTGGAGGTATGCTTCGCTACCAGCTTGATATCAGATCATTCGATGAGTTATCTGATGATGATGGAGTGTACGAGGATTCCGATTAA

Protein sequence

>MsG0780040125.01.T01

MADGESDKNIEIWKIKKLIKGLEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTILTEDGKEKKVTFDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQETGKYVYGVDDTLKALEMGAVETLIVWENLDITRYVLKNATTGEIVIKHLKKGQESDQSHFRDAATSADLEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDIRSFDELSDDDGVYEDSD*