AlfalfaGEDB | MsG0780036427.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036427.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036427.01.T01	XP_003621394.2	97.336	488	12	1	47	534	15	501	0	981

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036427.01.T01	O65782	44.898	490	260	5	49	534	16	499	4.93E-152	447

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036427.01.T01	G7L495	97.336	488	12	1	47	534	15	501	0.0	981

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000287.01	MsG0780036427.01	0.800642	1.309401e-48	6.128647e-46
MsG0180001615.01	MsG0780036427.01	-0.824134	9.517412e-54	8.357227e-51
MsG0180003320.01	MsG0780036427.01	0.820087	8.255414e-53	6.469543e-50
MsG0280009253.01	MsG0780036427.01	0.800605	1.332356e-48	6.230220e-46
MsG0280010455.01	MsG0780036427.01	-0.818689	1.719085e-52	1.295720e-49
MsG0380015080.01	MsG0780036427.01	0.805622	1.221312e-49	6.492048e-47
MsG0380015110.01	MsG0780036427.01	0.814780	1.294342e-51	8.765169e-49
MsG0380016086.01	MsG0780036427.01	0.805253	1.459752e-49	7.685798e-47
MsG0380016299.01	MsG0780036427.01	0.805467	1.316112e-49	6.968284e-47
MsG0380016490.01	MsG0780036427.01	0.811998	5.287807e-51	3.322231e-48

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PPI

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Gene1	Gene2	Type
MsG0780036427.01	MsG0280008072.01	PPI
MsG0780036427.01	MsG0380015760.01	PPI
MsG0780036427.01	MsG0480022832.01	PPI
MsG0780036427.01	MsG0880046292.01	PPI
MsG0780036427.01	MsG0180000086.01	PPI
MsG0780036427.01	MsG0480022833.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780036427.01.T01	MTR_7g012860	97.336	488	12	1	47	534	15	501	981
MsG0780036427.01.T01	MTR_0287s0060	97.336	488	12	1	47	534	15	501	981
MsG0780036427.01.T01	MTR_7g012330	88.730	488	53	1	47	534	15	500	905
MsG0780036427.01.T01	MTR_4g026050	61.350	489	181	3	47	534	16	497	612
MsG0780036427.01.T01	MTR_5g045770	61.765	476	180	2	60	534	23	497	604
MsG0780036427.01.T01	MTR_4g025970	61.845	477	179	3	60	534	23	498	601
MsG0780036427.01.T01	MTR_4g025980	59.426	488	192	3	48	534	15	497	590
MsG0780036427.01.T01	MTR_4g026200	59.743	467	186	2	66	531	29	494	582
MsG0780036427.01.T01	MTR_5g023680	59.787	470	187	2	63	531	2	470	570
MsG0780036427.01.T01	MTR_5g073020	54.989	471	210	2	66	534	33	503	555

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036427.01.T01	AT4G31500	44.898	490	260	5	49	534	16	499	5.03e-153	447
MsG0780036427.01.T01	AT3G26330	45.551	472	248	5	67	534	32	498	7.47e-143	421
MsG0780036427.01.T01	AT3G26320	44.376	489	263	5	50	534	15	498	4.88e-142	419
MsG0780036427.01.T01	AT5G57260	44.894	470	248	7	67	529	31	496	1.02e-140	416
MsG0780036427.01.T01	AT3G26300	47.109	467	238	6	67	529	32	493	4.68e-140	414
MsG0780036427.01.T01	AT3G26310	45.203	469	247	7	65	529	30	492	1.13e-136	405
MsG0780036427.01.T01	AT4G13770	40.927	496	283	6	38	529	6	495	3.07e-136	404
MsG0780036427.01.T01	AT3G26290	44.989	469	249	5	70	534	35	498	7.10e-132	393
MsG0780036427.01.T01	AT3G26290	44.989	469	249	5	70	534	48	511	8.08e-132	393
MsG0780036427.01.T01	AT2G02580	43.958	480	260	5	59	534	24	498	4.47e-131	391

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Find 118 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTATGAGCATGAAGG+TGG	0.658076	7:-7999406	MsG0780036427.01.T01:CDS
AAACCCTAACATGGAGAAAA+CGG	0.486012	7:-8000959	None:intergenic
AAACCTTTACTGGTCTCTCT+TGG	0.385897	7:+7998547	None:intergenic
AAACGACGTCGGAGTTACGG+TGG	0.701971	7:-8000845	MsG0780036427.01.T01:CDS
AAATCAGTTACGGCGGTGAA+CGG	0.555517	7:-8000931	MsG0780036427.01.T01:CDS
AAATTTCAGAGGAATGAACA+TGG	0.670710	7:+7999491	None:intergenic
AACATCTCAATCCTAATAAT+CGG	0.389424	7:-7999210	MsG0780036427.01.T01:CDS
AACCTTTACTGGTCTCTCTT+GGG	0.300162	7:+7998548	None:intergenic
AACGGAAAACAAATCAGTTA+CGG	0.537873	7:-8000941	MsG0780036427.01.T01:CDS
AACTTCAGCCACATCAGTTT+GGG	0.334855	7:-7998740	MsG0780036427.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTCAGAGGAATGAACA+TGG	+	Chr7:7999475-7999494	None:intergenic	30.0%
AACGGAAAACAAATCAGTTA+CGG	-	Chr7:7998022-7998041	MsG0780036427.01.T01:three_prime_UTR	30.0%
AAGGATGATATAGACATTGA+AGG	-	Chr7:8000716-8000735	MsG0780036427.01.T01:intron	30.0%
AATCACAACCATCAGATAAT+TGG	+	Chr7:7998229-7998248	None:intergenic	30.0%
AGGATGATATAGACATTGAA+GGG	-	Chr7:8000717-8000736	MsG0780036427.01.T01:intron	30.0%
CAAAAACCAAGAAACTACTT+AGG	+	Chr7:8000167-8000186	None:intergenic	30.0%
CCCAATCAAATGAATTAAGA+AGG	+	Chr7:8000676-8000695	None:intergenic	30.0%
CTAAAAATTTGTAGATAGGG+AGG	-	Chr7:7998837-7998856	MsG0780036427.01.T01:intron	30.0%
CTGTCTCATGAAGTAAATTA+TGG	+	Chr7:7999598-7999617	None:intergenic	30.0%
CTTTACACAAAACATAAAGC+GGG	+	Chr7:7999941-7999960	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	7998014	8000971	7998014	ID=MsG0780036427.01;Name=MsG0780036427.01
Chr7	mRNA	7998014	8000971	7998014	ID=MsG0780036427.01.T01;Parent=MsG0780036427.01;Name=MsG0780036427.01.T01;_AED=0.53;_eAED=0.53;_QI=0\|0.5\|0.33\|0.66\|1\|1\|3\|169\|534
Chr7	exon	7998014	7998788	7998014	ID=MsG0780036427.01.T01:exon:4209;Parent=MsG0780036427.01.T01
Chr7	exon	7999102	7999961	7999102	ID=MsG0780036427.01.T01:exon:4208;Parent=MsG0780036427.01.T01
Chr7	exon	8000833	8000971	8000833	ID=MsG0780036427.01.T01:exon:4207;Parent=MsG0780036427.01.T01
Chr7	CDS	8000833	8000971	8000833	ID=MsG0780036427.01.T01:cds;Parent=MsG0780036427.01.T01
Chr7	CDS	7999102	7999961	7999102	ID=MsG0780036427.01.T01:cds;Parent=MsG0780036427.01.T01
Chr7	CDS	7998183	7998788	7998183	ID=MsG0780036427.01.T01:cds;Parent=MsG0780036427.01.T01
Chr7	three_prime_UTR	7998014	7998182	7998014	ID=MsG0780036427.01.T01:three_prime_utr;Parent=MsG0780036427.01.T01

Gene Sequence

>MsG0780036427.01.T01

ATGGAGAAAACGGAAAACAAATCAGTTACGGCGGTGAACGGTGGTTACCTTAGTGGCGAGCTGCTTCCTTGGAGTCGGCGCAATCCAGCCGTGAATCAACCGGAAAACGACGTCGGAGTTACGGTGGCGCGCGAGCAAGTATTATTCCTTTTCTTGAAATACAAAACCAATATCAAGAAGAACTCATCATCATCCTTTCCAAAAGGTCCAAAAGGTCTTCCTATAATTGGAAATCTCCATCAACTTGACACTTCAAATCTCCATTTACAATTTTGGAATCTCTCAAAAATCTATGGTTCTCTTTTCTCTCTTCAACTTGGTTTCAAGAAAGCAATTGTTGTTTGTTCACCTAAACTAGCTCAAGAAATTCTCAAAGATCATGACCATGATGTATCTAGTAGACCACCATCACATGGCACACAGATATTATCATACAATGGCATGGATATGATATTTTCACCATACAATGATCATTGGAGAGAGATAAGAAAAATTTGTATTGTCCATTTCTTTAGCTCCAAGAAAATTTCTAGCTTTTCTCATGTGAGAAAATCTGAGGTCAAGCAAATGATTGAAAAAATATCTAACCATGTTCATTCCTCTGAAATTTCAAACCTTAGTGAGATCCTAATGTCTGTCTTAAGCTCTATAGTATGTAGAATTGCTTTTGGTAAAAGTTATGAGCATGAAGGTGGTGAGAAAAGTAGGTTCCATAATTTACTTCATGAGACAGAAGCTATTTTCCTTTCCTTCTTTGTTTCAGATCATATTCCTTTCATGGGGTGGATTGATAAACTCACAGGGGCAAATGCTCGTGTTGACAAGACTTTCAAGGCTTTGGATGAGTTTCTTGAACAAGTCCTTCAAGAACATCTCAATCCTAATAATCGGAAGAAAGATGAAGAAGAGAAGGATATAGTTGACGAGTTACTCGAGTTGAAGAATCAGGGTCGTCTCTCAATTGATCTCACCAATGATCACATCAAAGCCGTCCTTATGAACCTACTTGTAGCAGCTACTGACACAACTTCAGCCACATCAGTTTGGGCGATGACTGGATTAATGAAGAATCCTAGAGCAATGAAGAAAGCTCAAGAAGAAATTAGAAACATATGTGGCAAAAAAGAGTTCATAGATGAAGATGATATTCAAAAGCTCGTATATCTTAAGGCTGTGATAAAAGAGACATTAAGATTCTATGCACCAGCACCATTAGCCCCAAGAGAGACCAGTAAAGGTTTCATTCTAAATGGATATAAAATAGAACCAAAAACATCGGTGTTTGTGAATATTTGGGCCATTCATAGGGACCCTGAGGCATGGAAAGATCCCGACGAGTTTTATCCAGAGAGATTCTTAAACAATGATATAGATTTTAAGGGACGAGATTTTGAGTTGATACCATTTGGTGCAGGGCGTAGAATTTGCCCTGGCATGCCATTGGGAATCGCCACAGTGGAAATGATAATTGCAAACCTTCTTAATTCATTTGATTGGGAAATGCCTGAAGGGATGACAAAGGATGATATAGACATTGAAGGGTTGCCAGGACTTTCAAGACACAAGAAGAATCACCTTTGCCTTGTAGCCAAGAATCACATGTAA

Protein sequence

>MsG0780036427.01.T01

MEKTENKSVTAVNGGYLSGELLPWSRRNPAVNQPENDVGVTVAREQVLFLFLKYKTNIKKNSSSSFPKGPKGLPIIGNLHQLDTSNLHLQFWNLSKIYGSLFSLQLGFKKAIVVCSPKLAQEILKDHDHDVSSRPPSHGTQILSYNGMDMIFSPYNDHWREIRKICIVHFFSSKKISSFSHVRKSEVKQMIEKISNHVHSSEISNLSEILMSVLSSIVCRIAFGKSYEHEGGEKSRFHNLLHETEAIFLSFFVSDHIPFMGWIDKLTGANARVDKTFKALDEFLEQVLQEHLNPNNRKKDEEEKDIVDELLELKNQGRLSIDLTNDHIKAVLMNLLVAATDTTSATSVWAMTGLMKNPRAMKKAQEEIRNICGKKEFIDEDDIQKLVYLKAVIKETLRFYAPAPLAPRETSKGFILNGYKIEPKTSVFVNIWAIHRDPEAWKDPDEFYPERFLNNDIDFKGRDFELIPFGAGRRICPGMPLGIATVEMIIANLLNSFDWEMPEGMTKDDIDIEGLPGLSRHKKNHLCLVAKNHM*