AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030135.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030135.01.T01 MTR_5g097900 97.279 294 8 0 1 294 1 294 0.0 591
MsG0580030135.01.T01 MTR_5g097910 97.279 294 8 0 1 294 1 294 0.0 590
MsG0580030135.01.T01 MTR_5g097940 97.279 294 8 0 1 294 1 294 0.0 590
MsG0580030135.01.T01 MTR_3g083130 67.931 290 92 1 6 294 7 296 1.84e-152 429
MsG0580030135.01.T01 MTR_0374s0050 63.423 298 106 3 1 295 1 298 3.02e-136 388
MsG0580030135.01.T01 MTR_4g072320 52.703 296 130 4 1 294 1 288 2.28e-101 300
MsG0580030135.01.T01 MTR_4g072360 49.832 297 143 4 1 294 1 294 3.96e-98 291
MsG0580030135.01.T01 MTR_4g072350 52.297 283 132 3 15 294 12 294 4.37e-98 291
MsG0580030135.01.T01 MTR_6g073110 50.505 297 141 4 1 294 1 294 6.55e-98 291
MsG0580030135.01.T01 MTR_8g070095 43.165 278 155 2 19 294 15 291 1.13e-74 231
MsG0580030135.01.T01 MTR_4g036845 42.143 280 157 4 18 295 12 288 5.26e-73 227
MsG0580030135.01.T01 MTR_8g070115 43.214 280 148 4 19 294 15 287 9.73e-69 216
MsG0580030135.01.T01 MTR_7g063580 43.902 246 136 1 49 294 83 326 1.69e-68 217
MsG0580030135.01.T01 MTR_4g021350 43.262 282 145 5 19 295 15 286 1.81e-65 207
MsG0580030135.01.T01 MTR_4g021350 43.416 281 144 5 19 294 15 285 1.23e-64 206
MsG0580030135.01.T01 MTR_4g021410 43.866 269 131 4 19 284 16 267 1.31e-60 195
MsG0580030135.01.T01 MTR_7g070500 38.686 274 160 5 20 292 23 289 5.76e-59 191
MsG0580030135.01.T01 MTR_4g072060 39.863 291 160 6 15 294 6 292 7.03e-59 191
MsG0580030135.01.T01 MTR_7g070500 38.686 274 160 5 20 292 23 289 1.12e-58 191
MsG0580030135.01.T01 MTR_4g021450 42.391 276 145 3 19 294 16 277 3.14e-58 189
MsG0580030135.01.T01 MTR_4g021410 45.148 237 118 2 48 284 6 230 2.76e-57 185
MsG0580030135.01.T01 MTR_4g021410 44.335 203 101 2 82 284 1 191 2.85e-43 148
MsG0580030135.01.T01 MTR_4g021450 42.723 213 110 2 82 294 1 201 8.83e-42 144
MsG0580030135.01.T01 MTR_4g021450 42.763 152 84 1 143 294 10 158 9.03e-36 127
MsG0580030135.01.T01 MTR_6g072650 46.341 123 39 3 176 295 13 111 6.30e-26 100
MsG0580030135.01.T01 MTR_6g072710 46.729 107 52 2 191 294 1 105 3.67e-25 97.4
MsG0580030135.01.T01 MTR_3g449790 26.126 333 165 13 15 295 42 345 1.80e-18 84.7
MsG0580030135.01.T01 MTR_3g449790 25.664 339 165 14 15 295 42 351 4.94e-17 80.9
MsG0580030135.01.T01 MTR_7g114990 25.260 289 152 11 41 290 52 315 6.80e-13 68.6
MsG0580030135.01.T01 MTR_7g021850 24.742 291 165 9 41 296 43 314 1.48e-11 64.7
MsG0580030135.01.T01 MTR_1g102750 23.226 310 167 10 24 290 29 310 7.30e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030135.01.T01 AT1G59960 54.209 297 126 5 1 290 1 294 1.37e-112 328
MsG0580030135.01.T01 AT1G59950 56.679 277 111 4 20 290 15 288 9.29e-104 306
MsG0580030135.01.T01 AT2G37770 45.000 280 143 4 19 294 15 287 4.20e-77 238
MsG0580030135.01.T01 AT2G37790 43.214 280 148 4 19 294 15 287 7.18e-75 232
MsG0580030135.01.T01 AT5G62420 44.245 278 149 4 20 294 14 288 1.05e-73 229
MsG0580030135.01.T01 AT5G01670 42.182 275 151 5 19 292 23 290 2.57e-72 226
MsG0580030135.01.T01 AT2G37760 44.086 279 143 4 19 294 15 283 1.55e-71 223
MsG0580030135.01.T01 AT2G37760 44.086 279 143 4 19 294 15 283 1.55e-71 223
MsG0580030135.01.T01 AT2G37760 44.086 279 143 4 19 294 15 283 1.67e-71 223
MsG0580030135.01.T01 AT2G37760 44.086 279 143 4 19 294 15 283 5.92e-71 222
MsG0580030135.01.T01 AT2G37760 44.086 279 143 4 19 294 15 283 5.92e-71 222
MsG0580030135.01.T01 AT3G53880 41.993 281 152 4 19 295 15 288 8.23e-69 216
MsG0580030135.01.T01 AT3G53880 42.143 280 151 4 19 294 15 287 3.38e-68 215
MsG0580030135.01.T01 AT2G21260 39.175 291 162 6 15 294 6 292 1.90e-67 213
MsG0580030135.01.T01 AT5G01670 38.411 302 151 6 19 292 23 317 2.74e-66 211
MsG0580030135.01.T01 AT2G21250 38.488 291 164 6 15 294 6 292 9.82e-66 208
MsG0580030135.01.T01 AT2G37760 44.068 236 125 3 62 294 6 237 1.34e-58 189
MsG0580030135.01.T01 AT2G37760 44.068 236 125 3 62 294 6 237 1.34e-58 189
MsG0580030135.01.T01 AT2G37770 48.223 197 92 3 19 212 15 204 1.36e-55 181
MsG0580030135.01.T01 AT2G21250 42.381 210 110 5 15 217 6 211 3.64e-49 163
MsG0580030135.01.T01 AT2G21260 34.703 219 130 5 87 294 8 224 6.14e-41 142
MsG0580030135.01.T01 AT1G06690 26.974 304 162 10 35 296 85 370 3.07e-20 90.1
MsG0580030135.01.T01 AT5G53580 24.555 281 157 9 44 286 80 343 3.51e-15 75.5
MsG0580030135.01.T01 AT1G60680 27.215 316 163 16 15 285 14 307 1.26e-13 70.9

Find 70 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACGCAAATTT+TGG 0.172677 5:-107123918 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.287256 5:-107123377 None:intergenic
ATAACTTGGAGAAAATAAAA+TGG 0.308072 5:-107124164 None:intergenic
TGGACTTGTATTTGATTCAT+TGG 0.320809 5:+107123339 MsG0580030135.01.T01:CDS
TATTTATTCAATTTAATTAA+CGG 0.329390 5:+107124248 MsG0580030135.01.T01:three_prime_UTR
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5:-107122917 None:intergenic
TCATTCTCCATAACTTCATT+TGG 0.362803 5:-107123778 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.370719 5:+107123420 MsG0580030135.01.T01:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5:-107122871 None:intergenic
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5:+107123467 MsG0580030135.01.T01:CDS
CAAACACCTTTCACATCAAA+TGG 0.381803 5:-107123419 None:intergenic
AAAATTTGCGTATCTTTGAT+TGG 0.382837 5:+107123920 MsG0580030135.01.T01:CDS
AGTCCGGGCTTGGTTGGTCC+AGG 0.391423 5:-107123999 None:intergenic
AACACTACCCATGTTGTTGT+TGG 0.397673 5:-107122776 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5:+107123839 MsG0580030135.01.T01:CDS
ATCATAGAGGTCATTGAGTC+CGG 0.411816 5:-107124015 None:intergenic
TCTTTCCTTATCATAGCTCT+TGG 0.419142 5:-107123890 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.421446 5:-107123395 None:intergenic
TGTTCCCAAGAGCTATGATA+AGG 0.425757 5:+107123885 MsG0580030135.01.T01:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.426961 5:+107123421 MsG0580030135.01.T01:CDS
CTTTCCTTATCATAGCTCTT+GGG 0.433848 5:-107123889 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.435066 5:+107122988 MsG0580030135.01.T01:CDS
TTTGATACAGCTGCTGCATA+TGG 0.438772 5:+107122940 MsG0580030135.01.T01:CDS
GAGGTCATTGAGTCCGGGCT+TGG 0.446240 5:-107124009 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 5:+107123771 MsG0580030135.01.T01:CDS
TAAGCAAATCGTTTGATCCC+TGG 0.463607 5:+107123981 MsG0580030135.01.T01:exon
AAAGTTTAGAAGTAACAAAA+AGG 0.467615 5:-107123029 None:intergenic
GACTCTTCAACTAGACTACT+TGG 0.469433 5:+107123319 MsG0580030135.01.T01:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.471607 5:+107123752 MsG0580030135.01.T01:CDS
ATCCCTGGACCAACCAAGCC+CGG 0.482612 5:+107123996 MsG0580030135.01.T01:exon
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5:-107123447 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5:+107123449 MsG0580030135.01.T01:CDS
AATACTACTATGAAATAACT+TGG 0.501836 5:-107124178 None:intergenic
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5:-107122870 None:intergenic
TCTTGGTGAAGCTTTGAAAG+AGG 0.518146 5:+107122975 MsG0580030135.01.T01:CDS
CTTCAATTGACTAGATGTGT+TGG 0.531137 5:-107122821 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.535658 5:+107122840 MsG0580030135.01.T01:CDS
GTCCGGGCTTGGTTGGTCCA+GGG 0.541777 5:-107123998 None:intergenic
CTGCTTGCACCTTTCCTCAA+CGG 0.542888 5:-107123751 None:intergenic
TATGGCTCAGAACAAGCTCT+TGG 0.544655 5:+107122958 MsG0580030135.01.T01:CDS
TCATTGAGTCCGGGCTTGGT+TGG 0.547327 5:-107124005 None:intergenic
ATGAGAGCTATGTTTGATGA+TGG 0.548737 5:-107122720 None:intergenic
TCTATATTTAGTCATCATAG+AGG 0.553846 5:-107124028 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.555328 5:+107122841 MsG0580030135.01.T01:CDS
GTGTTGGTAAGAACCTTTGT+TGG 0.566031 5:-107122805 None:intergenic
GTTGAGGAAAGGTGCAAGCA+GGG 0.567542 5:+107123753 MsG0580030135.01.T01:CDS
TCATAGAGGTCATTGAGTCC+GGG 0.574712 5:-107124014 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 5:+107123668 MsG0580030135.01.T01:intron
GCTGATCCCATTCCAACCAC+AGG 0.587516 5:-107122847 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5:+107122907 MsG0580030135.01.T01:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5:+107123430 MsG0580030135.01.T01:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5:+107123853 MsG0580030135.01.T01:CDS
TAGTGTTGAAATTCCAACAA+AGG 0.595790 5:+107122792 MsG0580030135.01.T01:CDS
TGAATTACTTGATTGACTGC+AGG 0.596137 5:-107123548 None:intergenic
TTCTCAATCCAACAACAACA+TGG 0.599916 5:+107122768 MsG0580030135.01.T01:exon
AAATTGATTATTTAAAACAA+CGG 0.602105 5:-107124140 None:intergenic
TGGCCACTTAGCTCTCAACC+TGG 0.616515 5:+107123359 MsG0580030135.01.T01:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5:-107122869 None:intergenic
CAATTGAAGATGCCTGTGGT+TGG 0.621459 5:+107122835 MsG0580030135.01.T01:CDS
ATGTTGTTGTTGGATTGAGA+AGG 0.624157 5:-107122766 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 5:-107123069 None:intergenic
TTTCCAGGTTGAGAGCTAAG+TGG 0.629737 5:-107123362 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5:+107123808 MsG0580030135.01.T01:CDS
TTGAGGAAAGGTGCAAGCAG+GGG 0.634423 5:+107123754 MsG0580030135.01.T01:CDS
TTTCCTCAACGGAGAAAATG+CGG 0.640306 5:-107123740 None:intergenic
CTCTTGCCATTTGATGTGAA+AGG 0.649522 5:+107123413 MsG0580030135.01.T01:CDS
TCTCAATCCAACAACAACAT+GGG 0.679881 5:+107122769 MsG0580030135.01.T01:exon
ATTGACTGCAGGAAGAACAG+TGG 0.718468 5:-107123537 None:intergenic
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5:+107123433 MsG0580030135.01.T01:CDS
TAGTCAATTGAAGATGCCTG+TGG 0.737799 5:+107122831 MsG0580030135.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTATTTAAAACAA+CGG - Chr5:107124143-107124162 None:intergenic 10.0%
!! AAAGTTTAGAAGTAACAAAA+AGG - Chr5:107123032-107123051 None:intergenic 20.0%
!! AAATCAAATAAGTGTATGTT+TGG - Chr5:107123292-107123311 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG - Chr5:107124181-107124200 None:intergenic 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG - Chr5:107124167-107124186 None:intergenic 20.0%
!! CAATGAACTCATATATTTAT+AGG + Chr5:107123648-107123667 MsG0580030135.01.T01:intron 20.0%
!!! GTTTAAGTTAATCAAAACTT+AGG - Chr5:107123583-107123602 None:intergenic 20.0%
!!! TAATTTTGAAGCAAACTTAA+AGG - Chr5:107124071-107124090 None:intergenic 20.0%
!!! TTCAATTGATTTTTACATGA+AGG - Chr5:107123255-107123274 None:intergenic 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG + Chr5:107123032-107123051 MsG0580030135.01.T01:CDS 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG + Chr5:107123031-107123050 MsG0580030135.01.T01:CDS 20.0%
! AAAATTTGCGTATCTTTGAT+TGG + Chr5:107123920-107123939 MsG0580030135.01.T01:CDS 25.0%
! AAGTATGCTTAGATGATATT+TGG + Chr5:107123136-107123155 MsG0580030135.01.T01:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG - Chr5:107124031-107124050 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG + Chr5:107123651-107123670 MsG0580030135.01.T01:intron 25.0%
!! AATCAAAGATACGCAAATTT+TGG - Chr5:107123921-107123940 None:intergenic 25.0%
!!! TTAGATGATATTTGGTTCTA+AGG + Chr5:107123144-107123163 MsG0580030135.01.T01:intron 25.0%
ATTGGAAATGAAAACTTTCC+AGG - Chr5:107123380-107123399 None:intergenic 30.0%
TCATTCTCCATAACTTCATT+TGG - Chr5:107123781-107123800 None:intergenic 30.0%
TGGACTTGTATTTGATTCAT+TGG + Chr5:107123339-107123358 MsG0580030135.01.T01:CDS 30.0%
! GTTTTCATTTCCAATTGATG+TGG + Chr5:107123385-107123404 MsG0580030135.01.T01:CDS 30.0%
! TAGTGTTGAAATTCCAACAA+AGG + Chr5:107122792-107122811 MsG0580030135.01.T01:CDS 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + Chr5:107123839-107123858 MsG0580030135.01.T01:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + Chr5:107123421-107123440 MsG0580030135.01.T01:CDS 30.0%
ATCATTGAAGCCATCAAACA+AGG + Chr5:107122907-107122926 MsG0580030135.01.T01:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - Chr5:107123422-107123441 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + Chr5:107123853-107123872 MsG0580030135.01.T01:CDS 35.0%
CTTCAATTGACTAGATGTGT+TGG - Chr5:107122824-107122843 None:intergenic 35.0%
CTTTCCTTATCATAGCTCTT+GGG - Chr5:107123892-107123911 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - Chr5:107122873-107122892 None:intergenic 35.0%
TCTCAATCCAACAACAACAT+GGG + Chr5:107122769-107122788 MsG0580030135.01.T01:exon 35.0%
TCTTTCCTTATCATAGCTCT+TGG - Chr5:107123893-107123912 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - Chr5:107122874-107122893 None:intergenic 35.0%
TGAATTACTTGATTGACTGC+AGG - Chr5:107123551-107123570 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG + Chr5:107122768-107122787 MsG0580030135.01.T01:exon 35.0%
TTGAAAGAGGCAATTGAACT+TGG + Chr5:107122988-107123007 MsG0580030135.01.T01:CDS 35.0%
TTTCTTACATGTGAAGTCAG+GGG - Chr5:107122872-107122891 None:intergenic 35.0%
! ACACTTATTTGATTTCGTGC+AGG + Chr5:107123297-107123316 MsG0580030135.01.T01:intron 35.0%
! ATGTTGTTGTTGGATTGAGA+AGG - Chr5:107122769-107122788 None:intergenic 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - Chr5:107122920-107122939 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + Chr5:107123420-107123439 MsG0580030135.01.T01:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - Chr5:107123087-107123106 None:intergenic 35.0%
!!! ATACTTGTTGCTTTTGAGCT+TGG + Chr5:107124112-107124131 MsG0580030135.01.T01:three_prime_UTR 35.0%
AAAGAGATTGCAGATGCACA+TGG + Chr5:107123808-107123827 MsG0580030135.01.T01:CDS 40.0%
AACACTACCCATGTTGTTGT+TGG - Chr5:107122779-107122798 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - Chr5:107123398-107123417 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - Chr5:107123450-107123469 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - Chr5:107123072-107123091 None:intergenic 40.0%
ATCATAGAGGTCATTGAGTC+CGG - Chr5:107124018-107124037 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + Chr5:107123449-107123468 MsG0580030135.01.T01:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + Chr5:107123467-107123486 MsG0580030135.01.T01:CDS 40.0%
GACTCTTCAACTAGACTACT+TGG + Chr5:107123319-107123338 MsG0580030135.01.T01:CDS 40.0%
TAAGCAAATCGTTTGATCCC+TGG + Chr5:107123981-107124000 MsG0580030135.01.T01:exon 40.0%
TAGTCAATTGAAGATGCCTG+TGG + Chr5:107122831-107122850 MsG0580030135.01.T01:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + Chr5:107123885-107123904 MsG0580030135.01.T01:CDS 40.0%
TTTCCTCAACGGAGAAAATG+CGG - Chr5:107123743-107123762 None:intergenic 40.0%
TTTGATACAGCTGCTGCATA+TGG + Chr5:107122940-107122959 MsG0580030135.01.T01:CDS 40.0%
! CTCTTGCCATTTGATGTGAA+AGG + Chr5:107123413-107123432 MsG0580030135.01.T01:CDS 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - Chr5:107122808-107122827 None:intergenic 40.0%
!! TCTTGGTGAAGCTTTGAAAG+AGG + Chr5:107122975-107122994 MsG0580030135.01.T01:CDS 40.0%
AAGATGCCTGTGGTTGGAAT+GGG + Chr5:107122841-107122860 MsG0580030135.01.T01:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - Chr5:107123540-107123559 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + Chr5:107122835-107122854 MsG0580030135.01.T01:CDS 45.0%
CAGGGGACCAAATGAAGTTA+TGG + Chr5:107123771-107123790 MsG0580030135.01.T01:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + Chr5:107122958-107122977 MsG0580030135.01.T01:CDS 45.0%
TCATAGAGGTCATTGAGTCC+GGG - Chr5:107124017-107124036 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + Chr5:107123706-107123725 MsG0580030135.01.T01:CDS 45.0%
! GCATTTTCTCCGTTGAGGAA+AGG + Chr5:107123742-107123761 MsG0580030135.01.T01:CDS 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - Chr5:107123684-107123703 None:intergenic 45.0%
! TAACCGCATTTTCTCCGTTG+AGG + Chr5:107123737-107123756 MsG0580030135.01.T01:CDS 45.0%
! TTTCCAGGTTGAGAGCTAAG+TGG - Chr5:107123365-107123384 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + Chr5:107123430-107123449 MsG0580030135.01.T01:CDS 45.0%
!! TATTTATTCAATTTAATTAA+CGG + Chr5:107124248-107124267 MsG0580030135.01.T01:three_prime_UTR 5.0%
AGGTGGAGATGAACCTTGCA+TGG + Chr5:107123668-107123687 MsG0580030135.01.T01:intron 50.0%
AGGTGTTTGGGAATCCATGG+AGG + Chr5:107123433-107123452 MsG0580030135.01.T01:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - Chr5:107123754-107123773 None:intergenic 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + Chr5:107122840-107122859 MsG0580030135.01.T01:CDS 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + Chr5:107123753-107123772 MsG0580030135.01.T01:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + Chr5:107123754-107123773 MsG0580030135.01.T01:CDS 50.0%
GCTGATCCCATTCCAACCAC+AGG - Chr5:107122850-107122869 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + Chr5:107123752-107123771 MsG0580030135.01.T01:CDS 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG - Chr5:107124008-107124027 None:intergenic 55.0%
! TGGCCACTTAGCTCTCAACC+TGG + Chr5:107123359-107123378 MsG0580030135.01.T01:CDS 55.0%
ATCCCTGGACCAACCAAGCC+CGG + Chr5:107123996-107124015 MsG0580030135.01.T01:exon 60.0%
GAGGTCATTGAGTCCGGGCT+TGG - Chr5:107124012-107124031 None:intergenic 60.0%
! AGTCCGGGCTTGGTTGGTCC+AGG - Chr5:107124002-107124021 None:intergenic 65.0%
! GTCCGGGCTTGGTTGGTCCA+GGG - Chr5:107124001-107124020 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 107122722 107124283 107122722 ID=MsG0580030135.01;Name=MsG0580030135.01
Chr5 mRNA 107122722 107124283 107122722 ID=MsG0580030135.01.T01;Parent=MsG0580030135.01;Name=MsG0580030135.01.T01;_AED=0.44;_eAED=0.44;_QI=65|1|1|1|1|1|3|287|296
Chr5 exon 107122722 107123106 107122722 ID=MsG0580030135.01.T01:exon:17324;Parent=MsG0580030135.01.T01
Chr5 exon 107123319 107123562 107123319 ID=MsG0580030135.01.T01:exon:17325;Parent=MsG0580030135.01.T01
Chr5 exon 107123670 107124283 107123670 ID=MsG0580030135.01.T01:exon:17326;Parent=MsG0580030135.01.T01
Chr5 five_prime_UTR 107122722 107122786 107122722 ID=MsG0580030135.01.T01:five_prime_utr;Parent=MsG0580030135.01.T01
Chr5 CDS 107122787 107123106 107122787 ID=MsG0580030135.01.T01:cds;Parent=MsG0580030135.01.T01
Chr5 CDS 107123319 107123562 107123319 ID=MsG0580030135.01.T01:cds;Parent=MsG0580030135.01.T01
Chr5 CDS 107123670 107123996 107123670 ID=MsG0580030135.01.T01:cds;Parent=MsG0580030135.01.T01
Chr5 three_prime_UTR 107123997 107124283 107123997 ID=MsG0580030135.01.T01:three_prime_utr;Parent=MsG0580030135.01.T01
Gene Sequence

>MsG0580030135.01.T01

ATGGGTAGTGTTGAAATTCCAACAAAGGTTCTTACCAACACATCTAGTCAATTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACAGCTGCTGCATATGGCTCAGAACAAGCTCTTGGTGAAGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGACCTTTTTGTTACTTCTAAACTTTGGGTCACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTATTTGATTCATTGGCCACTTAGCTCTCAACCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTGCCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTCGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCTCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGCTATGATAAGGAAAGAATGAGCCAAAATTTGCGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATTGCTCAAATTAAGCAAATCGTTTGA

Protein sequence

>MsG0580030135.01.T01

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMSQNLRIFDWSLTKEDHEKIAQIKQIV*