AlfalfaGEDB | MsG0780036426.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036426.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036426.01.T01	XP_003621357.1	93.4	500	33	0	1	500	1	500	0	950

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036426.01.T01	O65782	44.512	492	261	6	15	500	14	499	2.18E-146	431

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036426.01.T01	Q2MJ13	93.400	500	33	0	1	500	1	500	0.0	950

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048595.01	MsG0780036426.01	0.828083	1.094819e-54	1.077041e-51
MsG0080049133.01	MsG0780036426.01	-0.815436	9.253608e-52	6.379695e-49
MsG0180000322.01	MsG0780036426.01	-0.843058	1.769051e-58	2.734513e-55
MsG0180002809.01	MsG0780036426.01	-0.804717	1.888984e-49	9.810474e-47
MsG0180002982.01	MsG0780036426.01	-0.811468	6.897304e-51	4.272876e-48
MsG0180003114.01	MsG0780036426.01	-0.816872	4.419620e-52	3.169277e-49
MsG0180003235.01	MsG0780036426.01	0.802387	5.748779e-49	2.812503e-46
MsG0180003350.01	MsG0780036426.01	-0.818119	2.314519e-52	1.717325e-49
MsG0180004193.01	MsG0780036426.01	-0.807314	5.370212e-50	2.981571e-47
MsG0180004458.01	MsG0780036426.01	-0.804058	2.591708e-49	1.323382e-46

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PPI

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Gene1	Gene2	Type
MsG0180000086.01	MsG0780036426.01	PPI
MsG0280008072.01	MsG0780036426.01	PPI
MsG0380015760.01	MsG0780036426.01	PPI
MsG0480022832.01	MsG0780036426.01	PPI
MsG0480022833.01	MsG0780036426.01	PPI
MsG0880046292.01	MsG0780036426.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780036426.01.T01	MTR_7g012330	93.400	500	33	0	1	500	1	500	950
MsG0780036426.01.T01	MTR_7g012860	91.036	502	42	2	1	500	1	501	894
MsG0780036426.01.T01	MTR_0287s0060	91.036	502	42	2	1	500	1	501	894
MsG0780036426.01.T01	MTR_4g026050	62.475	493	173	5	11	500	14	497	610
MsG0780036426.01.T01	MTR_5g045770	61.311	473	179	3	28	497	23	494	600
MsG0780036426.01.T01	MTR_4g025970	61.181	474	179	4	28	497	23	495	597
MsG0780036426.01.T01	MTR_4g025980	59.063	491	190	4	10	497	12	494	585
MsG0780036426.01.T01	MTR_4g026200	59.743	467	184	3	34	497	29	494	572
MsG0780036426.01.T01	MTR_5g023680	60.000	470	184	3	31	497	2	470	565
MsG0780036426.01.T01	MTR_5g073020	54.140	471	212	3	34	500	33	503	541

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036426.01.T01	AT4G31500	44.512	492	261	6	15	500	14	499	2.23e-147	431
MsG0780036426.01.T01	AT3G26300	45.749	494	256	8	8	495	6	493	3.73e-141	416
MsG0780036426.01.T01	AT5G57260	44.681	470	247	7	35	495	31	496	9.52e-139	409
MsG0780036426.01.T01	AT3G26310	44.737	494	260	8	8	495	6	492	1.65e-137	406
MsG0780036426.01.T01	AT3G26330	45.339	472	247	6	35	500	32	498	3.03e-137	405
MsG0780036426.01.T01	AT3G26320	44.196	491	262	7	16	500	14	498	3.75e-136	403
MsG0780036426.01.T01	AT4G13770	41.309	489	274	6	13	495	14	495	4.59e-133	395
MsG0780036426.01.T01	AT2G02580	43.487	499	270	7	8	500	6	498	1.20e-131	391
MsG0780036426.01.T01	AT5G25120	42.596	493	264	10	13	495	6	489	6.55e-130	387
MsG0780036426.01.T01	AT3G26290	45.610	467	237	7	38	495	48	506	1.25e-129	387

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Find 99 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAACAAACTAATAA+AGG	0.375143	7:+7978030	None:intergenic
AAAAGTTATGAACATGAAGG+GGG	0.663934	7:-7977487	MsG0780036426.01.T01:CDS
AAATCGTAAGCAAGCAGACA+CGG	0.641793	7:+7975712	None:intergenic
AAATGAGTTAAGAAGGTTTG+CGG	0.472909	7:+7976007	None:intergenic
AACATCTCAATCCTAATTAT+CGG	0.350951	7:-7977291	MsG0780036426.01.T01:CDS
AAGCGCATCCACATCCGTCT+GGG	0.594137	7:-7976444	MsG0780036426.01.T01:CDS
AAGGAAGATATAGACACTGA+AGG	0.610054	7:-7975957	MsG0780036426.01.T01:CDS
AATATGCCCTGGCATACCAT+TGG	0.528651	7:-7976054	MsG0780036426.01.T01:CDS
AATTCCTGAAGGGATGACAA+AGG	0.683896	7:-7975976	MsG0780036426.01.T01:CDS
AATTGCAAATGAAGATTTGA+AGG	0.412278	7:+7977910	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTATGAACATGAAGG+GGG	-	Chr7:7976343-7976362	MsG0780036426.01.T01:CDS	30.0%
AAATGAGTTAAGAAGGTTTG+CGG	+	Chr7:7977826-7977845	None:intergenic	30.0%
ACACAAATACTGTCTTACAA+TGG	-	Chr7:7976088-7976107	MsG0780036426.01.T01:CDS	30.0%
ACCTAGATTTCTATGTTATG+TGG	-	Chr7:7976792-7976811	MsG0780036426.01.T01:intron	30.0%
ACCTTCTTAACTCATTTGAT+TGG	-	Chr7:7977829-7977848	MsG0780036426.01.T01:CDS	30.0%
AGAAATTAGAAGCCTCAAAA+AGG	-	Chr7:7977458-7977477	MsG0780036426.01.T01:CDS	30.0%
AGTATTTGTGTACCATATGA+TGG	+	Chr7:7976079-7976098	None:intergenic	30.0%
CAAAATTTCAAACCTTAGTG+AGG	-	Chr7:7976273-7976292	MsG0780036426.01.T01:CDS	30.0%
CAATTTGAAGAGAGAAAAGA+GGG	+	Chr7:7975970-7975989	None:intergenic	30.0%
CCTTCTTAACTCATTTGATT+GGG	-	Chr7:7977830-7977849	MsG0780036426.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	7975696	7978156	7975696	ID=MsG0780036426.01;Name=MsG0780036426.01
Chr7	mRNA	7975696	7978156	7975696	ID=MsG0780036426.01.T01;Parent=MsG0780036426.01;Name=MsG0780036426.01.T01;_AED=0.49;_eAED=0.49;_QI=71\|1\|1\|1\|1\|1\|2\|197\|500
Chr7	exon	7975696	7976492	7975696	ID=MsG0780036426.01.T01:exon:4204;Parent=MsG0780036426.01.T01
Chr7	exon	7977183	7978156	7977183	ID=MsG0780036426.01.T01:exon:4203;Parent=MsG0780036426.01.T01
Chr7	five_prime_UTR	7978086	7978156	7978086	ID=MsG0780036426.01.T01:five_prime_utr;Parent=MsG0780036426.01.T01
Chr7	CDS	7977183	7978085	7977183	ID=MsG0780036426.01.T01:cds;Parent=MsG0780036426.01.T01
Chr7	CDS	7975893	7976492	7975893	ID=MsG0780036426.01.T01:cds;Parent=MsG0780036426.01.T01
Chr7	three_prime_UTR	7975696	7975892	7975696	ID=MsG0780036426.01.T01:three_prime_utr;Parent=MsG0780036426.01.T01

Gene Sequence

>MsG0780036426.01.T01

ATGGTGTCATATCTTCATACACTTCTAGCCTTACCTTTATTAGTTTGTTTCCTTTTCATGAAATACAAAACCAATATCAAGAAGAACTCATCATCAACCTTTCCAAAAGGTCCAAAAGGCCTTCCTATAATTGGAAATCTCCATCAACTTGATCCTTCAAATCTTCATTTGCAATTTTGGAATCTCTCAAAAATCTATGGCCCTCTTTTCTCTCTTCAAATTGGTTTCAAGAAAGCAATTGTTGTTTGCTCACCTAAACTAGCTCAAGAAATTCTCAAAGAGCATGACCATGAAGTATCTAGTAGACCTCCATCATATGGTACACAAATACTGTCTTACAATGGTATAGATATGATATTTTCACCATATAATGATTGTTGGAGAGAGATAAGAAAAATTTGTGTTGTCCATTTCTTTAGTTCCAAAAAAATTTCTAGCTTTTCCCATGTGAGAAAATCTGAGGTCAAGATAATGATAGAAAAGATATCTAACCATGTTTCTTCTTCCAAAATTTCAAACCTTAGTGAGGTCTTAATGTCTGTCTCAAGTTCTATTGTATGTAGAATTGCTTTTGGAAAAAGTTATGAACATGAAGGGGGTGAGAAAAGCAGGTTCCATGGTTTACTTAATGAGACACAAGCTATTTTCCTTTCCTTTTTTGTTTCAGATTATATTCCTTTTATGGGGTGGATTGATAAACTCACCGGGGCAATTGCTCGTGTCGACAAAACTTTCAAGGCTTTGGATGAGTTTCTTGAACAAGTCCTTCAAGAACATCTCAATCCTAATTATCGGAAGAAAGATGAAGAAGAGAAGGATATAGTTGACGTGTTACTCGAGTTGAAGAATCAGGGTCGTCTCTCAATTGATCTCACCAATGATCACATCAAAGCTGTCCTTATGAACCTACTTGTAGCAGCTACTGACACAAGCGCATCCACATCCGTCTGGGTGATGACCGGATTAATAAAGAATCCAAGATCAATGAAGAAAGCTCAAGAAGAAATTAGAAGCCTCAAAAAGGAGTTCATAGATGAAGATGATATCCAAAAGCTTGTATATTTTAAGGCTGTGATAAAAGAGACATTACGATTCTATGCACCAGCACCACTAGCCCCAAGAGAGACCAGTAAAAGTTTCATTCTAGATGGATATAAAATAGAACCAAAAACATCAGTGTTTGTGAGTATTTGGTCTATTCATAGGGACCCCGAGACATGGAAAGACCCTGACGAGTTTTATCCAGAGAGATTCTTAAACAATGATATAGATTTTAAGGGACAAGATTTTGAGCTGATTCCATTCGGTGCAGGGCGTAGAATATGCCCTGGCATACCATTGGGAATCGCCACAGTAGAAATGATAACCGCAAACCTTCTTAACTCATTTGATTGGGAAATTCCTGAAGGGATGACAAAGGAAGATATAGACACTGAAGGGTTGCCAGGACTTGCTAGACACAAGAAGAATCACCTTTGCCTTGTTGCCAAGAATCACATGTAA

Protein sequence

>MsG0780036426.01.T01

MVSYLHTLLALPLLVCFLFMKYKTNIKKNSSSTFPKGPKGLPIIGNLHQLDPSNLHLQFWNLSKIYGPLFSLQIGFKKAIVVCSPKLAQEILKEHDHEVSSRPPSYGTQILSYNGIDMIFSPYNDCWREIRKICVVHFFSSKKISSFSHVRKSEVKIMIEKISNHVSSSKISNLSEVLMSVSSSIVCRIAFGKSYEHEGGEKSRFHGLLNETQAIFLSFFVSDYIPFMGWIDKLTGAIARVDKTFKALDEFLEQVLQEHLNPNYRKKDEEEKDIVDVLLELKNQGRLSIDLTNDHIKAVLMNLLVAATDTSASTSVWVMTGLIKNPRSMKKAQEEIRSLKKEFIDEDDIQKLVYFKAVIKETLRFYAPAPLAPRETSKSFILDGYKIEPKTSVFVSIWSIHRDPETWKDPDEFYPERFLNNDIDFKGQDFELIPFGAGRRICPGIPLGIATVEMITANLLNSFDWEIPEGMTKEDIDTEGLPGLARHKKNHLCLVAKNHM*