AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041088.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041088.01.T01 MTR_1g060890 41.667 444 156 15 1 364 2 422 1.28e-67 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041088.01.T01 AT5G03670 33.249 397 156 13 1 305 1 380 1.91e-39 147
MsG0780041088.01.T01 AT2G36420 33.913 345 144 11 5 302 8 315 1.65e-33 129
MsG0780041088.01.T01 AT5G03670 30.435 345 126 15 1 248 1 328 5.50e-25 105

Find 92 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAGGCTTTGGGCTATT+TGG 0.129747 7:-86352591 MsG0780041088.01.T01:CDS
CTATTTCCTGCTTCCGATTC+TGG 0.143562 7:+86352538 None:intergenic
AGTAGCTCATGTAAGTATTT+TGG 0.148577 7:+86352942 None:intergenic
GTCTAACATGGAATGTATTA+TGG 0.154669 7:-86349876 MsG0780041088.01.T01:three_prime_UTR
CAGAGGAATTAGCATGTTAA+TGG 0.248136 7:-86349959 MsG0780041088.01.T01:three_prime_UTR
ATAAACCCACATTATTTCTT+TGG 0.264872 7:+86349817 None:intergenic
GATGAGATGATGAATGTTTC+TGG 0.273948 7:+86352647 None:intergenic
GCTTGCAATCTTTAGCATTC+TGG 0.282487 7:-86349994 MsG0780041088.01.T01:three_prime_UTR
GCAAAACGAAAAGGACTTTC+AGG 0.307629 7:+86352336 None:intergenic
ATTTGAGAAACTTGCAGAAT+TGG 0.308653 7:-86350424 MsG0780041088.01.T01:CDS
AGAAAATGACTTCAAAGAAT+TGG 0.324338 7:-86350295 MsG0780041088.01.T01:CDS
GGATGAGGATGAAACATATA+TGG 0.353271 7:-86350361 MsG0780041088.01.T01:CDS
AGAGGAATTAGCATGTTAAT+GGG 0.362915 7:-86349958 MsG0780041088.01.T01:three_prime_UTR
ATTCAAATCTGAAGTTGGTT+AGG 0.395778 7:+86353159 None:intergenic
TCTAACATGGAATGTATTAT+GGG 0.402837 7:-86349875 MsG0780041088.01.T01:three_prime_UTR
GTGGGATTTGCTGTCTGTCA+TGG 0.410641 7:+86350244 None:intergenic
TTAGTTAGTTTATGTGATGA+TGG 0.419692 7:-86352967 MsG0780041088.01.T01:exon
GACTCGGCGACGCTAACTCC+GGG 0.434042 7:+86352280 None:intergenic
TGTGAGGGAGTTATTGAAGT+TGG 0.436041 7:-86352499 MsG0780041088.01.T01:CDS
TAACTCCGGGGTGTGGCTGC+CGG 0.441342 7:+86352293 None:intergenic
TATTGAAGAGGTTGGAATCA+TGG 0.442336 7:-86350132 MsG0780041088.01.T01:three_prime_UTR
TCAGTTTCTTAAATTCTTGT+GGG 0.447004 7:+86350226 None:intergenic
TTCTTCTTGAAGCTGCTCTC+AGG 0.452952 7:-86352672 MsG0780041088.01.T01:CDS
ATCAGTTTCTTAAATTCTTG+TGG 0.459352 7:+86350225 None:intergenic
ATGTAGTTGTTGAGAAGAAA+TGG 0.459717 7:+86352903 None:intergenic
TGAAGCTGTGTATCTGTCAA+TGG 0.460059 7:-86350268 MsG0780041088.01.T01:CDS
AGCTAGGATATTGAAGAGGT+TGG 0.467698 7:-86350140 MsG0780041088.01.T01:three_prime_UTR
AGCAGATAAGGAACATGGCT+GGG 0.477023 7:-86350027 MsG0780041088.01.T01:three_prime_UTR
GGGGTGTGGCTGCCGGAGCA+AGG 0.478890 7:+86352300 None:intergenic
GATTTGAATCACTCAATCAA+TGG 0.480827 7:-86353145 MsG0780041088.01.T01:five_prime_UTR
AGAAGAGGATTTCTCTATAG+AGG 0.482598 7:-86350074 MsG0780041088.01.T01:three_prime_UTR
CGACTCGGCGACGCTAACTC+CGG 0.495649 7:+86352279 None:intergenic
CATGGAATGTATTATGGGAT+AGG 0.500611 7:-86349870 MsG0780041088.01.T01:three_prime_UTR
TAACGCAACGAAACCAGAAT+CGG 0.502950 7:-86352551 MsG0780041088.01.T01:CDS
CAGGAAAAGCATGTTGGTGA+TGG 0.505950 7:+86352355 None:intergenic
GTTTGAAGAGCAAAACGAAA+AGG 0.508198 7:+86352327 None:intergenic
TGCAATCTTTAGCATTCTGG+TGG 0.515937 7:-86349991 MsG0780041088.01.T01:three_prime_UTR
ACGAAACCAGAATCGGAAGC+AGG 0.517439 7:-86352544 MsG0780041088.01.T01:CDS
GAGCAGATAAGGAACATGGC+TGG 0.519541 7:-86350028 MsG0780041088.01.T01:three_prime_UTR
GAGTGATTCAAATCTGAAGT+TGG 0.521282 7:+86353154 None:intergenic
GAAGTTGGATTCTTCTGTGA+AGG 0.523721 7:-86352484 MsG0780041088.01.T01:CDS
AGAACTTGAGAAAAGAATGC+TGG 0.525436 7:-86350394 MsG0780041088.01.T01:CDS
GGGGAGAGATGAGATGGGAT+GGG 0.539286 7:+86353191 None:intergenic
GGTGGGTCTAAAACACAGAC+TGG 0.539386 7:+86351589 None:intergenic
GCTGGATCAAGAAGAGGATG+AGG 0.543983 7:-86350376 MsG0780041088.01.T01:CDS
ATAGCGACGTGGTGATAGCT+AGG 0.544170 7:-86350156 MsG0780041088.01.T01:three_prime_UTR
GCGACGCTAACTCCGGGGTG+TGG 0.547073 7:+86352286 None:intergenic
TTAAATGGGAGAGAATTTGA+AGG 0.549297 7:+86353075 None:intergenic
TCTTCTAACATAAAGAATGA+AGG 0.549302 7:+86349904 None:intergenic
AGAAGTGTTGCTGTTCGAGA+AGG 0.550922 7:+86352691 None:intergenic
GAGGATTTCTCTATAGAGGA+TGG 0.553770 7:-86350070 MsG0780041088.01.T01:three_prime_UTR
AAGTGACCAAAGAAATAATG+TGG 0.556923 7:-86349823 MsG0780041088.01.T01:three_prime_UTR
TCATCATCATCCTCGAATGG+TGG 0.561023 7:+86351571 None:intergenic
GAGGAATTAGCATGTTAATG+GGG 0.562269 7:-86349957 MsG0780041088.01.T01:three_prime_UTR
GTTGGAATCATGGAAAGAAG+TGG 0.563148 7:-86350122 MsG0780041088.01.T01:three_prime_UTR
GGATGAAACATATATGGAAG+AGG 0.564977 7:-86350355 MsG0780041088.01.T01:CDS
CATATAAACGATGATGAAGA+TGG 0.565217 7:-86351544 MsG0780041088.01.T01:CDS
GACTTTCAGGAAAAGCATGT+TGG 0.568731 7:+86352349 None:intergenic
GAAGTGTTGCTGTTCGAGAA+GGG 0.568864 7:+86352692 None:intergenic
CATCATCATCCTCGAATGGT+GGG 0.573296 7:+86351572 None:intergenic
TAGAAGAGTTTAGTCTAACA+TGG 0.584750 7:-86349888 MsG0780041088.01.T01:three_prime_UTR
GATTTCTCTATAGAGGATGG+AGG 0.589468 7:-86350067 MsG0780041088.01.T01:three_prime_UTR
AATTGATATGATGATAGAAG+AGG 0.596171 7:-86350089 MsG0780041088.01.T01:three_prime_UTR
AAGAATGCTGGATCAAGAAG+AGG 0.597514 7:-86350382 MsG0780041088.01.T01:CDS
CTTCAAACAAGTCCTTGCTC+CGG 0.604522 7:-86352312 MsG0780041088.01.T01:CDS
CTCATGTTTGTAGCTAGATG+TGG 0.606774 7:-86349783 MsG0780041088.01.T01:three_prime_UTR
TTGCTCCGGCAGCCACACCC+CGG 0.609299 7:-86352298 MsG0780041088.01.T01:CDS
ACCTCAGTTATGTTTCGACT+CGG 0.610662 7:+86352264 None:intergenic
AGAGGATGATGTTGAAGATG+AGG 0.613307 7:-86350337 MsG0780041088.01.T01:CDS
CATATGGAAACTTCAAGTAG+TGG 0.617164 7:-86352417 MsG0780041088.01.T01:CDS
GCAGATAAGGAACATGGCTG+GGG 0.618512 7:-86350026 MsG0780041088.01.T01:three_prime_UTR
TGAAGTTGGTTAGGAAACCA+AGG 0.634184 7:+86353168 None:intergenic
ACTTCATCATCATCCTCGAA+TGG 0.634270 7:+86351568 None:intergenic
TGCTGAGCAGATAAGGAACA+TGG 0.637996 7:-86350032 MsG0780041088.01.T01:three_prime_UTR
TCTCTATAGAGGATGGAGGG+TGG 0.640291 7:-86350063 MsG0780041088.01.T01:three_prime_UTR
ATAATGTGGGTTTATGTACA+TGG 0.641968 7:-86349809 MsG0780041088.01.T01:three_prime_UTR
ATTTCTCTATAGAGGATGGA+GGG 0.649835 7:-86350066 MsG0780041088.01.T01:three_prime_UTR
GAATGAATATGTGTCTGTGA+GGG 0.651219 7:-86352514 MsG0780041088.01.T01:CDS
TGATAGCTAGGATATTGAAG+AGG 0.656936 7:-86350144 MsG0780041088.01.T01:three_prime_UTR
AGGAATTAGCATGTTAATGG+GGG 0.657803 7:-86349956 MsG0780041088.01.T01:three_prime_UTR
GAAGTTGGTTAGGAAACCAA+GGG 0.658902 7:+86353169 None:intergenic
CTGTGACATACTCTGAACAA+TGG 0.660476 7:+86351492 None:intergenic
AGTGACCAAAGAAATAATGT+GGG 0.661329 7:-86349822 MsG0780041088.01.T01:three_prime_UTR
ACTCGGCGACGCTAACTCCG+GGG 0.687335 7:+86352281 None:intergenic
GAGATGGGATGGGAGTGAAG+TGG 0.693403 7:+86353201 None:intergenic
AGTTGGTTAGGAAACCAAGG+GGG 0.694310 7:+86353171 None:intergenic
GTTGGTTAGGAAACCAAGGG+GGG 0.697288 7:+86353172 None:intergenic
AGAATGAATATGTGTCTGTG+AGG 0.718238 7:-86352515 MsG0780041088.01.T01:CDS
GGGGAAGTTAGTTCAAACAG+TGG 0.724917 7:+86352735 None:intergenic
TTCTTTAGAAGATAGCGACG+TGG 0.740114 7:-86350167 MsG0780041088.01.T01:exon
GCCGAGTCGAAACATAACTG+AGG 0.752254 7:-86352265 MsG0780041088.01.T01:intron
AAGTTGGTTAGGAAACCAAG+GGG 0.779595 7:+86353170 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTATAAAACTTGATA+AGG + Chr7:86352073-86352092 None:intergenic 10.0%
!!! AATTTTATAAAACTTGATAA+GGG + Chr7:86352072-86352091 None:intergenic 10.0%
!!! TTTTCAATAATAAAAAGTTT+AGG + Chr7:86351771-86351790 None:intergenic 10.0%
!! ATGAAGAAAAAAAAAAACAA+AGG + Chr7:86350977-86350996 None:intergenic 15.0%
!! ATACAATCAACAAATTAGAA+TGG + Chr7:86351542-86351561 None:intergenic 20.0%
!! ATGTAAAATTACTTGTCTTA+AGG + Chr7:86352264-86352283 None:intergenic 20.0%
!! CAAAACAAAACAAAAAACAA+AGG - Chr7:86350382-86350401 MsG0780041088.01.T01:CDS 20.0%
!! TGTAAAATTACTTGTCTTAA+GGG + Chr7:86352263-86352282 None:intergenic 20.0%
!!! AATTTTGAAACTAAGTATGA+TGG - Chr7:86353057-86353076 MsG0780041088.01.T01:five_prime_UTR 20.0%
!!! ACTTTTTTGTTTGTTTTGAT+TGG - Chr7:86352098-86352117 MsG0780041088.01.T01:intron 20.0%
!!! ATTCTAATTTGTTGATTGTA+TGG - Chr7:86351541-86351560 MsG0780041088.01.T01:CDS 20.0%
!!! CAAGTAATTTTACATATGTA+CGG - Chr7:86352269-86352288 MsG0780041088.01.T01:CDS 20.0%
!!! CTTTGTTTTTTGTTTTGTTT+TGG + Chr7:86350384-86350403 None:intergenic 20.0%
!!! GTTTTTGTGGAATTTAATAT+AGG - Chr7:86351295-86351314 MsG0780041088.01.T01:intron 20.0%
!!! TGAAGATGTTTTGTTTAAAT+GGG + Chr7:86349930-86349949 None:intergenic 20.0%
!!! TGATTGTTTGTTTGTTTTTT+CGG - Chr7:86350908-86350927 MsG0780041088.01.T01:intron 20.0%
!!! TTATTGACTCATTTTTTGTA+GGG + Chr7:86351087-86351106 None:intergenic 20.0%
!!! TTATTTAATGAGAGTTTTTG+TGG - Chr7:86351282-86351301 MsG0780041088.01.T01:intron 20.0%
!!! TTGAAGATGTTTTGTTTAAA+TGG + Chr7:86349931-86349950 None:intergenic 20.0%
!!! TTTATTGACTCATTTTTTGT+AGG + Chr7:86351088-86351107 None:intergenic 20.0%
!!! TTTTCGTTTTGAATGTTTAA+TGG - Chr7:86350814-86350833 MsG0780041088.01.T01:intron 20.0%
! AAAAACAAACACATTTAGTG+GGG - Chr7:86351787-86351806 MsG0780041088.01.T01:intron 25.0%
! AAAACAAAAAACAAAGGCTT+TGG - Chr7:86350388-86350407 MsG0780041088.01.T01:CDS 25.0%
! AAAAGTTTAGGTGAATTTGA+TGG + Chr7:86351759-86351778 None:intergenic 25.0%
! AAACAAAAAACAAAGGCTTT+GGG - Chr7:86350389-86350408 MsG0780041088.01.T01:CDS 25.0%
! AAGTACAATCATCAAAATTC+TGG + Chr7:86350849-86350868 None:intergenic 25.0%
! AAGTATCAATCAATTCAAGT+CGG - Chr7:86351342-86351361 MsG0780041088.01.T01:intron 25.0%
! AATTGATATGATGATAGAAG+AGG - Chr7:86352899-86352918 MsG0780041088.01.T01:CDS 25.0%
! AGAAAATGACTTCAAAGAAT+TGG - Chr7:86352693-86352712 MsG0780041088.01.T01:CDS 25.0%
! AGATCTTTCAATCAATATGT+TGG - Chr7:86352025-86352044 MsG0780041088.01.T01:intron 25.0%
! ATCAGTTTCTTAAATTCTTG+TGG + Chr7:86352766-86352785 None:intergenic 25.0%
! ATTCTCAACAACCAAATTTA+AGG + Chr7:86352209-86352228 None:intergenic 25.0%
! GAAAAACAAACACATTTAGT+GGG - Chr7:86351786-86351805 MsG0780041088.01.T01:intron 25.0%
! TATCCCAATGAGTATTAATT+AGG + Chr7:86352174-86352193 None:intergenic 25.0%
! TCAGTTTCTTAAATTCTTGT+GGG + Chr7:86352765-86352784 None:intergenic 25.0%
! TCTAACATGGAATGTATTAT+GGG - Chr7:86353113-86353132 MsG0780041088.01.T01:five_prime_UTR 25.0%
! TCTTCTAACATAAAGAATGA+AGG + Chr7:86353087-86353106 None:intergenic 25.0%
! TGAAAAACAAACACATTTAG+TGG - Chr7:86351785-86351804 MsG0780041088.01.T01:intron 25.0%
! TGACCTAATTAATACTCATT+GGG - Chr7:86352168-86352187 MsG0780041088.01.T01:intron 25.0%
! TTGTACAAAAACACATTAAG+AGG - Chr7:86351594-86351613 MsG0780041088.01.T01:CDS 25.0%
!! ATAAACCCACATTATTTCTT+TGG + Chr7:86353174-86353193 None:intergenic 25.0%
!! ATCTAACCAAGATATTTTAC+AGG - Chr7:86352508-86352527 MsG0780041088.01.T01:CDS 25.0%
!! ATTTTGTGGTACCTTAAATT+TGG - Chr7:86352195-86352214 MsG0780041088.01.T01:intron 25.0%
!! CTCCTAAAATGAAATTTTGT+GGG + Chr7:86351991-86352010 None:intergenic 25.0%
!! GTAAAGTAGTGATTTTCATT+TGG + Chr7:86350126-86350145 None:intergenic 25.0%
!! TCTCCTAAAATGAAATTTTG+TGG + Chr7:86351992-86352011 None:intergenic 25.0%
!! TTAGTTAGTTTATGTGATGA+TGG - Chr7:86350021-86350040 MsG0780041088.01.T01:three_prime_UTR 25.0%
!!! AAGTTTGATTTTGAGTTGAA+TGG + Chr7:86350163-86350182 None:intergenic 25.0%
!!! ATTCTTTTCTCAAGTTCTAA+TGG + Chr7:86352592-86352611 None:intergenic 25.0%
AAGTGACCAAAGAAATAATG+TGG - Chr7:86353165-86353184 MsG0780041088.01.T01:five_prime_UTR 30.0%
AATTACTTGTCTTAAGGGTA+TGG + Chr7:86352258-86352277 None:intergenic 30.0%
AGAGGAATTAGCATGTTAAT+GGG - Chr7:86353030-86353049 MsG0780041088.01.T01:five_prime_UTR 30.0%
AGTATCAATCAATTCAAGTC+GGG - Chr7:86351343-86351362 MsG0780041088.01.T01:intron 30.0%
AGTGACCAAAGAAATAATGT+GGG - Chr7:86353166-86353185 MsG0780041088.01.T01:five_prime_UTR 30.0%
ATAATGTGGGTTTATGTACA+TGG - Chr7:86353179-86353198 MsG0780041088.01.T01:five_prime_UTR 30.0%
ATGTAGTTGTTGAGAAGAAA+TGG + Chr7:86350088-86350107 None:intergenic 30.0%
ATTCAACTCAAATCCTACAA+GGG - Chr7:86351640-86351659 MsG0780041088.01.T01:intron 30.0%
ATTTGAGAAACTTGCAGAAT+TGG - Chr7:86352564-86352583 MsG0780041088.01.T01:CDS 30.0%
CATATAAACGATGATGAAGA+TGG - Chr7:86351444-86351463 MsG0780041088.01.T01:intron 30.0%
GAAAAACAACTTGGAACATA+TGG - Chr7:86350555-86350574 MsG0780041088.01.T01:intron 30.0%
GAATAGAACAGTAAACTGAT+TGG + Chr7:86352300-86352319 None:intergenic 30.0%
GATTTGAATCACTCAATCAA+TGG - Chr7:86349843-86349862 MsG0780041088.01.T01:three_prime_UTR 30.0%
GTCTAACATGGAATGTATTA+TGG - Chr7:86353112-86353131 MsG0780041088.01.T01:five_prime_UTR 30.0%
GTGACCTAATTAATACTCAT+TGG - Chr7:86352167-86352186 MsG0780041088.01.T01:intron 30.0%
TAGAAGAGTTTAGTCTAACA+TGG - Chr7:86353100-86353119 MsG0780041088.01.T01:five_prime_UTR 30.0%
TGTAGTTGTAAACAAAGAGT+AGG + Chr7:86351936-86351955 None:intergenic 30.0%
TTAAATGGGAGAGAATTTGA+AGG + Chr7:86349916-86349935 None:intergenic 30.0%
TTATATATCACCTATCAACG+AGG + Chr7:86351677-86351696 None:intergenic 30.0%
TTCTCAGAAGAAAAACAACT+TGG - Chr7:86350546-86350565 MsG0780041088.01.T01:intron 30.0%
TTTGTAGCAAATGAAACATG+TGG + Chr7:86351013-86351032 None:intergenic 30.0%
! ACTCATTGGGATAAATTTTG+TGG - Chr7:86352181-86352200 MsG0780041088.01.T01:intron 30.0%
! AGTAGCTCATGTAAGTATTT+TGG + Chr7:86350049-86350068 None:intergenic 30.0%
! ATTCAAATCTGAAGTTGGTT+AGG + Chr7:86349832-86349851 None:intergenic 30.0%
! GACCCACAAAATTTCATTTT+AGG - Chr7:86351986-86352005 MsG0780041088.01.T01:intron 30.0%
!!! GTTGATTTTGATTTAGAGAG+CGG - Chr7:86351468-86351487 MsG0780041088.01.T01:intron 30.0%
!!! TGTTTTGATTGGCAAATTGT+AGG - Chr7:86352109-86352128 MsG0780041088.01.T01:intron 30.0%
!!! TTTTTTGAAGTCAGGTGTTT+CGG + Chr7:86350230-86350249 None:intergenic 30.0%
AGAAAAATGCTGAGCAGATA+AGG - Chr7:86352949-86352968 MsG0780041088.01.T01:CDS 35.0%
AGAACTTGAGAAAAGAATGC+TGG - Chr7:86352594-86352613 MsG0780041088.01.T01:CDS 35.0%
AGAAGAGGATTTCTCTATAG+AGG - Chr7:86352914-86352933 MsG0780041088.01.T01:CDS 35.0%
AGAATGAATATGTGTCTGTG+AGG - Chr7:86350473-86350492 MsG0780041088.01.T01:intron 35.0%
AGGAATTAGCATGTTAATGG+GGG - Chr7:86353032-86353051 MsG0780041088.01.T01:five_prime_UTR 35.0%
ATTTCTCTATAGAGGATGGA+GGG - Chr7:86352922-86352941 MsG0780041088.01.T01:CDS 35.0%
CAGAGGAATTAGCATGTTAA+TGG - Chr7:86353029-86353048 MsG0780041088.01.T01:five_prime_UTR 35.0%
CATACTTTCACTCGACAATA+TGG - Chr7:86352329-86352348 MsG0780041088.01.T01:CDS 35.0%
CATATGGAAACTTCAAGTAG+TGG - Chr7:86350571-86350590 MsG0780041088.01.T01:intron 35.0%
CATGGAATGTATTATGGGAT+AGG - Chr7:86353118-86353137 MsG0780041088.01.T01:five_prime_UTR 35.0%
CTTGCTCCTGTAAAATATCT+TGG + Chr7:86352517-86352536 None:intergenic 35.0%
GAATGAATATGTGTCTGTGA+GGG - Chr7:86350474-86350493 MsG0780041088.01.T01:intron 35.0%
GAGGAATTAGCATGTTAATG+GGG - Chr7:86353031-86353050 MsG0780041088.01.T01:five_prime_UTR 35.0%
GATGAGATGATGAATGTTTC+TGG + Chr7:86350344-86350363 None:intergenic 35.0%
GATTCAACTCAAATCCTACA+AGG - Chr7:86351639-86351658 MsG0780041088.01.T01:intron 35.0%
GGATGAAACATATATGGAAG+AGG - Chr7:86352633-86352652 MsG0780041088.01.T01:CDS 35.0%
GGATGAGGATGAAACATATA+TGG - Chr7:86352627-86352646 MsG0780041088.01.T01:CDS 35.0%
GTAGGATGTGGTAAATTAGT+TGG - Chr7:86352127-86352146 MsG0780041088.01.T01:intron 35.0%
GTATCAATCAATTCAAGTCG+GGG - Chr7:86351344-86351363 MsG0780041088.01.T01:intron 35.0%
GTATGGTACATGTGCATTAT+AGG + Chr7:86352241-86352260 None:intergenic 35.0%
GTTTGAAGAGCAAAACGAAA+AGG + Chr7:86350664-86350683 None:intergenic 35.0%
TATTGAAGAGGTTGGAATCA+TGG - Chr7:86352856-86352875 MsG0780041088.01.T01:CDS 35.0%
TGATAGCTAGGATATTGAAG+AGG - Chr7:86352844-86352863 MsG0780041088.01.T01:CDS 35.0%
! ATTTTGCAGGGACTTTTACA+GGG + Chr7:86350276-86350295 None:intergenic 35.0%
! CAAGATATTTTACAGGAGCA+AGG - Chr7:86352515-86352534 MsG0780041088.01.T01:CDS 35.0%
! GAAGGTACGTAGAGAAAAAA+TGG - Chr7:86350522-86350541 MsG0780041088.01.T01:intron 35.0%
! GAGTGATTCAAATCTGAAGT+TGG + Chr7:86349837-86349856 None:intergenic 35.0%
!!! AGTGGTGATTTTTTGAAGTC+AGG + Chr7:86350238-86350257 None:intergenic 35.0%
!!! TTTTTGAAGTCAGGTGTTTC+GGG + Chr7:86350229-86350248 None:intergenic 35.0%
AACACATTAAGAGGCAACCT+TGG - Chr7:86351603-86351622 MsG0780041088.01.T01:intron 40.0%
AAGAATGCTGGATCAAGAAG+AGG - Chr7:86352606-86352625 MsG0780041088.01.T01:CDS 40.0%
ACAGCTGCTCAACATGTAAA+AGG - Chr7:86351877-86351896 MsG0780041088.01.T01:intron 40.0%
ACCTCAGTTATGTTTCGACT+CGG + Chr7:86350727-86350746 None:intergenic 40.0%
ACTTCATCATCATCCTCGAA+TGG + Chr7:86351423-86351442 None:intergenic 40.0%
AGAGGATGATGTTGAAGATG+AGG - Chr7:86352651-86352670 MsG0780041088.01.T01:CDS 40.0%
AGCTAGGATATTGAAGAGGT+TGG - Chr7:86352848-86352867 MsG0780041088.01.T01:CDS 40.0%
CAGAGAGAGAAAGATTTGCA+TGG + Chr7:86350888-86350907 None:intergenic 40.0%
CTCATGTTTGTAGCTAGATG+TGG - Chr7:86353205-86353224 MsG0780041088.01.T01:five_prime_UTR 40.0%
CTGTGACATACTCTGAACAA+TGG + Chr7:86351499-86351518 None:intergenic 40.0%
GAAGTTGGATTCTTCTGTGA+AGG - Chr7:86350504-86350523 MsG0780041088.01.T01:intron 40.0%
GAGGATTTCTCTATAGAGGA+TGG - Chr7:86352918-86352937 MsG0780041088.01.T01:CDS 40.0%
GAGTTGAATCCTTACCAACA+AGG + Chr7:86351629-86351648 None:intergenic 40.0%
GATTGGCAAATTGTAGGATG+TGG - Chr7:86352115-86352134 MsG0780041088.01.T01:intron 40.0%
GATTTCTCTATAGAGGATGG+AGG - Chr7:86352921-86352940 MsG0780041088.01.T01:CDS 40.0%
GCAAAACGAAAAGGACTTTC+AGG + Chr7:86350655-86350674 None:intergenic 40.0%
GCTTGCAATCTTTAGCATTC+TGG - Chr7:86352994-86353013 MsG0780041088.01.T01:five_prime_UTR 40.0%
GTTGGAATCATGGAAAGAAG+TGG - Chr7:86352866-86352885 MsG0780041088.01.T01:CDS 40.0%
TAAACAAAGAGTAGGCCACT+AGG + Chr7:86351928-86351947 None:intergenic 40.0%
TAACGCAACGAAACCAGAAT+CGG - Chr7:86350437-86350456 MsG0780041088.01.T01:CDS 40.0%
TGAAGCTGTGTATCTGTCAA+TGG - Chr7:86352720-86352739 MsG0780041088.01.T01:CDS 40.0%
TGAAGTGGTGTTTGTAGAGT+GGG + Chr7:86349775-86349794 None:intergenic 40.0%
TGCAATCTTTAGCATTCTGG+TGG - Chr7:86352997-86353016 MsG0780041088.01.T01:five_prime_UTR 40.0%
TGTGAGGGAGTTATTGAAGT+TGG - Chr7:86350489-86350508 MsG0780041088.01.T01:intron 40.0%
TTTCCCATTCAATGTGGACT+TGG - Chr7:86351902-86351921 MsG0780041088.01.T01:intron 40.0%
! AAGGCATTTCCCATTCAATG+TGG - Chr7:86351896-86351915 MsG0780041088.01.T01:intron 40.0%
! AAGTTGGTTAGGAAACCAAG+GGG + Chr7:86349821-86349840 None:intergenic 40.0%
! GAAGTTGGTTAGGAAACCAA+GGG + Chr7:86349822-86349841 None:intergenic 40.0%
! GACTTTCAGGAAAAGCATGT+TGG + Chr7:86350642-86350661 None:intergenic 40.0%
! GATTTTGCAGGGACTTTTAC+AGG + Chr7:86350277-86350296 None:intergenic 40.0%
! TGAAGTTGGTTAGGAAACCA+AGG + Chr7:86349823-86349842 None:intergenic 40.0%
! TTCTTTAGAAGATAGCGACG+TGG - Chr7:86352821-86352840 MsG0780041088.01.T01:CDS 40.0%
! TTTTGCAGGGACTTTTACAG+GGG + Chr7:86350275-86350294 None:intergenic 40.0%
!! AACAAAGGCTTTGGGCTATT+TGG - Chr7:86350397-86350416 MsG0780041088.01.T01:CDS 40.0%
!! TCTGGTGGATGAATTTTCAG+AGG - Chr7:86353012-86353031 MsG0780041088.01.T01:five_prime_UTR 40.0%
AATCCTTACCAACAAGGCCA+AGG + Chr7:86351623-86351642 None:intergenic 45.0%
AATTCAAGTCGGGGAAGAAG+AGG - Chr7:86351353-86351372 MsG0780041088.01.T01:intron 45.0%
AGCAGATAAGGAACATGGCT+GGG - Chr7:86352961-86352980 MsG0780041088.01.T01:exon 45.0%
AGGCCAAGTCCACATTGAAT+GGG + Chr7:86351908-86351927 None:intergenic 45.0%
AGTTGGTTAGGAAACCAAGG+GGG + Chr7:86349820-86349839 None:intergenic 45.0%
CATCATCATCCTCGAATGGT+GGG + Chr7:86351419-86351438 None:intergenic 45.0%
CTATTTCCTGCTTCCGATTC+TGG + Chr7:86350453-86350472 None:intergenic 45.0%
CTTCAAACAAGTCCTTGCTC+CGG - Chr7:86350676-86350695 MsG0780041088.01.T01:intron 45.0%
GGAAGAAGAGGAGGAAGATA+AGG - Chr7:86351365-86351384 MsG0780041088.01.T01:intron 45.0%
GGGGAAGTTAGTTCAAACAG+TGG + Chr7:86350256-86350275 None:intergenic 45.0%
GTGAAGTGGTGTTTGTAGAG+TGG + Chr7:86349776-86349795 None:intergenic 45.0%
TAGGCCAAGTCCACATTGAA+TGG + Chr7:86351909-86351928 None:intergenic 45.0%
TCATCATCATCCTCGAATGG+TGG + Chr7:86351420-86351439 None:intergenic 45.0%
TGCTGAGCAGATAAGGAACA+TGG - Chr7:86352956-86352975 MsG0780041088.01.T01:exon 45.0%
TTCTTCTTGAAGCTGCTCTC+AGG - Chr7:86350316-86350335 MsG0780041088.01.T01:CDS 45.0%
! CAGGAAAAGCATGTTGGTGA+TGG + Chr7:86350636-86350655 None:intergenic 45.0%
! GTTCGAGAAGGGATTTTGCA+GGG + Chr7:86350288-86350307 None:intergenic 45.0%
! TGTTCGAGAAGGGATTTTGC+AGG + Chr7:86350289-86350308 None:intergenic 45.0%
!! AGAAGTGTTGCTGTTCGAGA+AGG + Chr7:86350300-86350319 None:intergenic 45.0%
!! GAAGTGTTGCTGTTCGAGAA+GGG + Chr7:86350299-86350318 None:intergenic 45.0%
!! TGTTTTAGACCCACCATTCG+AGG - Chr7:86351407-86351426 MsG0780041088.01.T01:intron 45.0%
!!! TCAATAATTTTTTTTTATTT+TGG - Chr7:86350769-86350788 MsG0780041088.01.T01:intron 5.0%
ACGAAACCAGAATCGGAAGC+AGG - Chr7:86350444-86350463 MsG0780041088.01.T01:CDS 50.0%
ATAGCGACGTGGTGATAGCT+AGG - Chr7:86352832-86352851 MsG0780041088.01.T01:CDS 50.0%
CGATGTGAGACCTCGTTGAT+AGG - Chr7:86351664-86351683 MsG0780041088.01.T01:intron 50.0%
GAGCAGATAAGGAACATGGC+TGG - Chr7:86352960-86352979 MsG0780041088.01.T01:exon 50.0%
GCAGATAAGGAACATGGCTG+GGG - Chr7:86352962-86352981 MsG0780041088.01.T01:exon 50.0%
GCCGAGTCGAAACATAACTG+AGG - Chr7:86350723-86350742 MsG0780041088.01.T01:intron 50.0%
GCTGGATCAAGAAGAGGATG+AGG - Chr7:86352612-86352631 MsG0780041088.01.T01:CDS 50.0%
GTTGGTTAGGAAACCAAGGG+GGG + Chr7:86349819-86349838 None:intergenic 50.0%
TCAATGTGGACTTGGCCTAG+TGG - Chr7:86351910-86351929 MsG0780041088.01.T01:intron 50.0%
TCTCTATAGAGGATGGAGGG+TGG - Chr7:86352925-86352944 MsG0780041088.01.T01:CDS 50.0%
TTCTAACCGTGATGAGCGCA+CGG - Chr7:86351733-86351752 MsG0780041088.01.T01:intron 50.0%
! GGTGGGTCTAAAACACAGAC+TGG + Chr7:86351402-86351421 None:intergenic 50.0%
!! CAACCTTGGCCTTGTTGGTA+AGG - Chr7:86351617-86351636 MsG0780041088.01.T01:intron 50.0%
!! GTGGGATTTGCTGTCTGTCA+TGG + Chr7:86352747-86352766 None:intergenic 50.0%
CAAGGGGGGAGAGATGAGAT+GGG + Chr7:86349805-86349824 None:intergenic 55.0%
GAGATGGGATGGGAGTGAAG+TGG + Chr7:86349790-86349809 None:intergenic 55.0%
GGGGAGAGATGAGATGGGAT+GGG + Chr7:86349800-86349819 None:intergenic 55.0%
GGTCTCACATCGACCCTTGT+AGG + Chr7:86351656-86351675 None:intergenic 55.0%
TCAAGTCGGGGAAGAAGAGG+AGG - Chr7:86351356-86351375 MsG0780041088.01.T01:intron 55.0%
!! AGAGGCAACCTTGGCCTTGT+TGG - Chr7:86351612-86351631 MsG0780041088.01.T01:intron 55.0%
CCAAGGGGGGAGAGATGAGA+TGG + Chr7:86349806-86349825 None:intergenic 60.0%
CCATCTCATCTCTCCCCCCT+TGG - Chr7:86349803-86349822 MsG0780041088.01.T01:three_prime_UTR 60.0%
GGGGGAGAGATGAGATGGGA+TGG + Chr7:86349801-86349820 None:intergenic 60.0%
TGATGGCCGTGCGCTCATCA+CGG + Chr7:86351742-86351761 None:intergenic 60.0%
ACTCGGCGACGCTAACTCCG+GGG + Chr7:86350710-86350729 None:intergenic 65.0%
GACTCGGCGACGCTAACTCC+GGG + Chr7:86350711-86350730 None:intergenic 65.0%
TAACTCCGGGGTGTGGCTGC+CGG + Chr7:86350698-86350717 None:intergenic 65.0%
! CGACTCGGCGACGCTAACTC+CGG + Chr7:86350712-86350731 None:intergenic 65.0%
GCGACGCTAACTCCGGGGTG+TGG + Chr7:86350705-86350724 None:intergenic 70.0%
TTGCTCCGGCAGCCACACCC+CGG - Chr7:86350690-86350709 MsG0780041088.01.T01:intron 70.0%
GGGGTGTGGCTGCCGGAGCA+AGG + Chr7:86350691-86350710 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 86349775 86353235 86349775 ID=MsG0780041088.01;Name=MsG0780041088.01
Chr7 mRNA 86349775 86353235 86349775 ID=MsG0780041088.01.T01;Parent=MsG0780041088.01;Name=MsG0780041088.01.T01;_AED=0.19;_eAED=0.19;_QI=262|0.5|0.66|1|0.5|1|3|407|373
Chr7 exon 86349775 86350480 86349775 ID=MsG0780041088.01.T01:exon:52028;Parent=MsG0780041088.01.T01
Chr7 exon 86351503 86351617 86351503 ID=MsG0780041088.01.T01:exon:52027;Parent=MsG0780041088.01.T01
Chr7 exon 86352266 86353235 86352266 ID=MsG0780041088.01.T01:exon:52026;Parent=MsG0780041088.01.T01
Chr7 five_prime_UTR 86352974 86353235 86352974 ID=MsG0780041088.01.T01:five_prime_utr;Parent=MsG0780041088.01.T01
Chr7 CDS 86352266 86352973 86352266 ID=MsG0780041088.01.T01:cds;Parent=MsG0780041088.01.T01
Chr7 CDS 86351503 86351617 86351503 ID=MsG0780041088.01.T01:cds;Parent=MsG0780041088.01.T01
Chr7 CDS 86350182 86350480 86350182 ID=MsG0780041088.01.T01:cds;Parent=MsG0780041088.01.T01
Chr7 three_prime_UTR 86349775 86350181 86349775 ID=MsG0780041088.01.T01:three_prime_utr;Parent=MsG0780041088.01.T01
Gene Sequence

>MsG0780041088.01.T01

ATGATGGCTCCAAAATACTTACATGAGCTACTAAAAGAAGATCAAGAACCATTTCTTCTCAACAACTACATTTCACATAAACGTAGCCAAATGAAAATCACTACTTTACAACTCAAGAAAAAACCATTCAACTCAAAATCAAACTTCAACATGAATCTTTGTAAAAACACTTCTTGTTTTTTCTCATTTCCCGAAACACCTGACTTCAAAAAATCACCACTGTTTGAACTAACTTCCCCTGTAAAAGTCCCTGCAAAATCCCTTCTCGAACAGCAACACTTCTTCTTGAAGCTGCTCTCAGGATCCAGAAACATTCATCATCTCATCTTCTTCTTCTTCAAGTTCCAAAACAAAACAAAAAACAAAGGCTTTGGGCTATTTGGTTCTTTGTTCAAGAAACTAACGCAACGAAACCAGAATCGGAAGCAGGAAATAGAGAATGAATATGTGTCTGTGAGGGAGTTATTGAAGTTGGATTCTTCTGTGAAGGTACGTAGAGAAAAAATGGATTCTCAGAAGAAAAACAACTTGGAACATATGGAAACTTCAAGTAGTGGTTACTCATTTGTTACTGATCATGATGCTTGTGCTTGTCGCCATCACCAACATGCTTTTCCTGAAAGTCCTTTTCGTTTTGCTCTTCAAACAAGTCCTTGCTCCGGCAGCCACACCCCGGAGTTAGCGTCGCCGAGTCGAAACATAACTGAGTGTAGTCCAGTCTGTGTTTTAGACCCACCATTCGAGGATGATGATGAAGTACATATAAACGATGATGAAGATGGTGTTGATTTTGATTTAGAGAGCGGCTATGCCATTGTTCAGAGAGCAAGGCAGAAGATATTGTACAAGCTTTGCAGATTTGAGAAACTTGCAGAATTGGATCCATTAGAACTTGAGAAAAGAATGCTGGATCAAGAAGAGGATGAGGATGAAACATATATGGAAGAGGATGATGTTGAAGATGAGGAAAGAGAAGTATCATTTAAAGAAAATGACTTCAAAGAATTGGTTTTTGAAGCTGTGTATCTGTCAATGGTCCATGACAGACAGCAAATCCCACAAGAATTTAAGAAACTGATATCTGATCTAATCGTGAAGAAGAGAGAGAACTCGATTCTTTAG

Protein sequence

>MsG0780041088.01.T01

MMAPKYLHELLKEDQEPFLLNNYISHKRSQMKITTLQLKKKPFNSKSNFNMNLCKNTSCFFSFPETPDFKKSPLFELTSPVKVPAKSLLEQQHFFLKLLSGSRNIHHLIFFFFKFQNKTKNKGFGLFGSLFKKLTQRNQNRKQEIENEYVSVRELLKLDSSVKVRREKMDSQKKNNLEHMETSSSGYSFVTDHDACACRHHQHAFPESPFRFALQTSPCSGSHTPELASPSRNITECSPVCVLDPPFEDDDEVHINDDEDGVDFDLESGYAIVQRARQKILYKLCRFEKLAELDPLELEKRMLDQEEDEDETYMEEDDVEDEEREVSFKENDFKELVFEAVYLSMVHDRQQIPQEFKKLISDLIVKKRENSIL*