AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019711.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019711.01.T01 MTR_4g036815 99.261 406 3 0 1 406 1 406 0.0 822
MsG0480019711.01.T01 MTR_3g408430 61.386 404 130 9 10 406 7 391 1.94e-167 478
MsG0480019711.01.T01 MTR_2g021030 31.686 344 208 17 82 406 11 346 2.15e-19 90.1
MsG0480019711.01.T01 MTR_2g021030 32.086 187 109 9 189 365 256 434 1.70e-12 69.3
MsG0480019711.01.T01 MTR_2g021030 31.686 344 208 17 82 406 11 346 4.67e-19 89.7
MsG0480019711.01.T01 MTR_2g021030 29.864 221 137 9 189 399 256 468 7.49e-14 73.6
MsG0480019711.01.T01 MTR_1g114610 26.269 335 174 12 82 406 20 291 1.74e-13 72.0
MsG0480019711.01.T01 MTR_1g018790 24.611 386 215 15 82 405 64 435 8.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019711.01.T01 AT5G07670 56.757 407 148 8 1 402 1 384 2.37e-148 429
MsG0480019711.01.T01 AT5G51380 53.807 394 175 3 14 406 4 391 2.72e-137 401
MsG0480019711.01.T01 AT5G51370 57.729 317 133 1 90 406 40 355 7.89e-118 347
MsG0480019711.01.T01 AT5G51370 57.729 317 133 1 90 406 40 355 7.21e-117 348
MsG0480019711.01.T01 AT4G15475 28.286 350 212 12 82 406 11 346 9.86e-17 82.8
MsG0480019711.01.T01 AT4G15475 26.296 270 181 10 132 391 199 460 9.98e-14 73.6
MsG0480019711.01.T01 AT5G23340 27.431 288 152 12 82 341 10 268 3.14e-13 71.2
MsG0480019711.01.T01 AT5G25350 26.230 366 209 15 81 405 57 402 2.58e-11 65.9
MsG0480019711.01.T01 AT2G25490 25.498 251 153 9 189 405 216 466 4.77e-11 65.1

Find 94 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCTTCAATGGAGAATT+AGG 0.134701 4:-25622956 None:intergenic
TTGATCAATGATTGAGAAAT+TGG 0.141986 4:-25623107 None:intergenic
TCCGGGACTCGATGAGTATT+TGG 0.154157 4:+25623927 MsG0480019711.01.T01:CDS
GGATATTGGTTTGACGATTT+TGG 0.163958 4:+25623696 MsG0480019711.01.T01:CDS
TTGAATATGTATATTGATTC+TGG 0.183844 4:+25623388 MsG0480019711.01.T01:CDS
GGTTCGGTTGTTTCGGATAT+TGG 0.212698 4:+25623682 MsG0480019711.01.T01:CDS
TATCTGGTAGATTGATTTAT+AGG 0.229578 4:+25623281 MsG0480019711.01.T01:CDS
ACTTGAACCCTTCTCAAATT+AGG 0.239059 4:-25623499 None:intergenic
TGCTAGGGAGATTATTATTC+AGG 0.242284 4:+25624041 MsG0480019711.01.T01:CDS
CCTGTTGAGGTTATTGATAA+TGG 0.245467 4:+25623451 MsG0480019711.01.T01:CDS
GAACACGGTGGTCTGATTTA+TGG 0.247875 4:+25622981 MsG0480019711.01.T01:CDS
GGAGAATTAGGGTTAGGGTT+AGG 0.266907 4:-25622944 None:intergenic
GCAACAACGATTTGGTTTAA+AGG 0.278209 4:-25623025 None:intergenic
TTCACATTTCTCTGTGAATC+TGG 0.289076 4:-25623178 None:intergenic
GAGAATTAGGGTTAGGGTTA+GGG 0.296352 4:-25622943 None:intergenic
AATCATGTTGATTTGATTCA+TGG 0.312777 4:+25623316 MsG0480019711.01.T01:CDS
TGATCAATGATTGAGAAATT+GGG 0.319273 4:-25623106 None:intergenic
CTGTTGAGGTTATTGATAAT+GGG 0.336909 4:+25623452 MsG0480019711.01.T01:CDS
AATCAACATGATTAAGATTA+GGG 0.341888 4:-25623306 None:intergenic
TCGGCTTTGCAACTGTTTGC+AGG 0.351431 4:+25624091 MsG0480019711.01.T01:CDS
GTGTTCTACATTGCAGGAAT+TGG 0.354359 4:+25623564 MsG0480019711.01.T01:CDS
TGAAATGGGTTTGTTAAGTT+TGG 0.356585 4:+25623534 MsG0480019711.01.T01:CDS
GGGTTAGTTGCTTTAGCTAA+TGG 0.358130 4:+25623472 MsG0480019711.01.T01:CDS
GTTTCTTCAATGGAGAATTA+GGG 0.363111 4:-25622955 None:intergenic
TTGCAACTGTTTGCAGGTAA+TGG 0.363732 4:+25624097 MsG0480019711.01.T01:CDS
GATCGATTCGGATTCGTGAT+TGG 0.364905 4:+25623248 MsG0480019711.01.T01:CDS
ATTCTGGGTCGTCGCCGAAT+TGG 0.370566 4:+25623404 MsG0480019711.01.T01:CDS
TTGCAGCAGCAACAACGATT+TGG 0.372725 4:-25623033 None:intergenic
AGATTATTATTCAGGATTGC+TGG 0.374839 4:+25624049 MsG0480019711.01.T01:CDS
AAATCAACATGATTAAGATT+AGG 0.378177 4:-25623307 None:intergenic
GATTGCTGGGGATTTGATAA+TGG 0.380312 4:+25624063 MsG0480019711.01.T01:CDS
TTGTGAAGCTTGAGCTTTGT+GGG 0.380521 4:+25623737 MsG0480019711.01.T01:CDS
TAAGAAGATTGATTTGAATC+CGG 0.381569 4:+25623909 MsG0480019711.01.T01:CDS
ACAGAGAAATGTGAATTCAT+TGG 0.382696 4:+25623186 MsG0480019711.01.T01:CDS
CCGGGACTCGATGAGTATTT+GGG 0.383808 4:+25623928 MsG0480019711.01.T01:CDS
TTCAATGGAGAATTAGGGTT+AGG 0.390540 4:-25622950 None:intergenic
CGTGTTCCTAGTTTCTTCAA+TGG 0.391074 4:-25622965 None:intergenic
TTGAGAAGGGTTCAAGTGAT+TGG 0.391585 4:+25623505 MsG0480019711.01.T01:CDS
TTTCTGTTTGCAGGGTTGCT+AGG 0.398905 4:+25624025 MsG0480019711.01.T01:CDS
TGAAGAGTGTTCTACATTGC+AGG 0.404045 4:+25623558 MsG0480019711.01.T01:CDS
TTGGTTTAAAGGCTTTGATT+TGG 0.408136 4:-25623014 None:intergenic
TTTGCAAAAGTGTCAGTTGC+GGG 0.408350 4:+25623978 MsG0480019711.01.T01:CDS
TGAATATGTATATTGATTCT+GGG 0.409312 4:+25623389 MsG0480019711.01.T01:CDS
TTCTGTTTGCAGGGTTGCTA+GGG 0.414617 4:+25624026 MsG0480019711.01.T01:CDS
GGATTTGATAATGGCATGTT+CGG 0.419974 4:+25624072 MsG0480019711.01.T01:CDS
GTTGAATTTACAAGGTCGTT+TGG 0.420107 4:+25623222 MsG0480019711.01.T01:CDS
CTTGTGAAGCTTGAGCTTTG+TGG 0.422001 4:+25623736 MsG0480019711.01.T01:CDS
GTGTAGTGATAATGTGTTAA+GGG 0.429057 4:+25623597 MsG0480019711.01.T01:CDS
TCCTCACAATTAAACCAATT+CGG 0.434096 4:-25623418 None:intergenic
GAATTTCATCAGATAACAAA+AGG 0.435440 4:-25623132 None:intergenic
AGTGATTGGTGCTAGTGAAA+TGG 0.438381 4:+25623519 MsG0480019711.01.T01:CDS
GTCGTTTGGTTCGATCGATT+CGG 0.438610 4:+25623236 MsG0480019711.01.T01:CDS
CCATTATCAATAACCTCAAC+AGG 0.455104 4:-25623451 None:intergenic
AAGAAGATTGATTTGAATCC+GGG 0.456191 4:+25623910 MsG0480019711.01.T01:CDS
GATCAATGATTGAGAAATTG+GGG 0.464246 4:-25623105 None:intergenic
GATTATTATTCAGGATTGCT+GGG 0.464395 4:+25624050 MsG0480019711.01.T01:CDS
GCGGGATAAGAAGAGCGTTT+CGG 0.467821 4:+25623996 MsG0480019711.01.T01:CDS
TTGATGGGATTAAGGCGATT+GGG 0.480218 4:+25623773 MsG0480019711.01.T01:CDS
GTGATTGGTGCTAGTGAAAT+GGG 0.480614 4:+25623520 MsG0480019711.01.T01:CDS
TCAATGGAGAATTAGGGTTA+GGG 0.480646 4:-25622949 None:intergenic
TTTGATGGGATTAAGGCGAT+TGG 0.483087 4:+25623772 MsG0480019711.01.T01:CDS
AGTGTAGTGATAATGTGTTA+AGG 0.483866 4:+25623596 MsG0480019711.01.T01:CDS
CCCAAATACTCATCGAGTCC+CGG 0.489216 4:-25623928 None:intergenic
ATCATGTTGATTTGATTCAT+GGG 0.489312 4:+25623317 MsG0480019711.01.T01:CDS
ATTCATTGGTTTGTAAAAGA+TGG 0.495844 4:+25623200 MsG0480019711.01.T01:CDS
AGTTGACATTGTGTGATCAT+AGG 0.504164 4:+25623818 MsG0480019711.01.T01:CDS
AAAAGATGGTTGAATTTACA+AGG 0.506141 4:+25623214 MsG0480019711.01.T01:CDS
GGAGAATATGCTTCCTGTTG+AGG 0.516115 4:+25623438 MsG0480019711.01.T01:CDS
AAATTGGTTGGGAATGTTGA+GGG 0.518791 4:+25623652 MsG0480019711.01.T01:CDS
GCCGAATTGGTTTAATTGTG+AGG 0.522553 4:+25623417 MsG0480019711.01.T01:CDS
CTTGAGCTTTGTGGGTGTGA+AGG 0.531367 4:+25623745 MsG0480019711.01.T01:CDS
ATGGTTGTCCTAATTTGAGA+AGG 0.537606 4:+25623491 MsG0480019711.01.T01:CDS
ATCATAGGATGGATGATGGA+TGG 0.540837 4:+25623833 MsG0480019711.01.T01:CDS
TGGGAAGTGTTGTCAGATGT+TGG 0.542314 4:+25623792 MsG0480019711.01.T01:CDS
TTGAGCTTTGTGGGTGTGAA+GGG 0.551393 4:+25623746 MsG0480019711.01.T01:CDS
AAATGCAGCCTCTCAAGTGC+AGG 0.555404 4:-25623958 None:intergenic
GTTCTTGTCCTGCACTTGAG+AGG 0.559400 4:+25623950 MsG0480019711.01.T01:CDS
TGGTTGTCCTAATTTGAGAA+GGG 0.574459 4:+25623492 MsG0480019711.01.T01:CDS
AATTCTCCATTGAAGAAACT+AGG 0.579620 4:+25622959 MsG0480019711.01.T01:CDS
TGTGATCATAGGATGGATGA+TGG 0.581367 4:+25623829 MsG0480019711.01.T01:CDS
AATTTCATCAGATAACAAAA+GGG 0.589426 4:-25623131 None:intergenic
TAAGGGGAATTGCGGCGTGT+GGG 0.590970 4:+25623614 MsG0480019711.01.T01:CDS
TTAAGGGGAATTGCGGCGTG+TGG 0.599283 4:+25623613 MsG0480019711.01.T01:CDS
GGATGATGGATGGATGGCTG+CGG 0.600102 4:+25623843 MsG0480019711.01.T01:CDS
TGTAGTGATAATGTGTTAAG+GGG 0.600472 4:+25623598 MsG0480019711.01.T01:CDS
GAAATTGGTTGGGAATGTTG+AGG 0.606598 4:+25623651 MsG0480019711.01.T01:CDS
TAGGATGGATGATGGATGGA+TGG 0.622771 4:+25623837 MsG0480019711.01.T01:CDS
ATTTGCAAAAGTGTCAGTTG+CGG 0.627786 4:+25623977 MsG0480019711.01.T01:CDS
TAATGTGTTAAGGGGAATTG+CGG 0.643313 4:+25623606 MsG0480019711.01.T01:CDS
GACATTGTGTGATCATAGGA+TGG 0.643629 4:+25623822 MsG0480019711.01.T01:CDS
ATTATTATTCAGGATTGCTG+GGG 0.650156 4:+25624051 MsG0480019711.01.T01:CDS
CATTGAAGAAACTAGGAACA+CGG 0.659350 4:+25622966 MsG0480019711.01.T01:CDS
GAAGTGTTGTCAGATGTTGG+AGG 0.680445 4:+25623795 MsG0480019711.01.T01:CDS
TGAAGAAACTAGGAACACGG+TGG 0.807458 4:+25622969 MsG0480019711.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAACATGATTAAGATT+AGG - Chr4:25623310-25623329 None:intergenic 20.0%
!! AATCAACATGATTAAGATTA+GGG - Chr4:25623309-25623328 None:intergenic 20.0%
!! AATTTCATCAGATAACAAAA+GGG - Chr4:25623134-25623153 None:intergenic 20.0%
!!! TGAATATGTATATTGATTCT+GGG + Chr4:25623389-25623408 MsG0480019711.01.T01:CDS 20.0%
!!! TTGAATATGTATATTGATTC+TGG + Chr4:25623388-25623407 MsG0480019711.01.T01:CDS 20.0%
! AAAAGATGGTTGAATTTACA+AGG + Chr4:25623214-25623233 MsG0480019711.01.T01:CDS 25.0%
! GAATTTCATCAGATAACAAA+AGG - Chr4:25623135-25623154 None:intergenic 25.0%
! TGATCAATGATTGAGAAATT+GGG - Chr4:25623109-25623128 None:intergenic 25.0%
! TTGATCAATGATTGAGAAAT+TGG - Chr4:25623110-25623129 None:intergenic 25.0%
!! TATCTGGTAGATTGATTTAT+AGG + Chr4:25623281-25623300 MsG0480019711.01.T01:CDS 25.0%
!!! AAATTAGTGTTTGATTTTCG+AGG - Chr4:25623085-25623104 None:intergenic 25.0%
!!! AATCATGTTGATTTGATTCA+TGG + Chr4:25623316-25623335 MsG0480019711.01.T01:CDS 25.0%
!!! ATCATGTTGATTTGATTCAT+GGG + Chr4:25623317-25623336 MsG0480019711.01.T01:CDS 25.0%
!!! ATTCATTGGTTTGTAAAAGA+TGG + Chr4:25623200-25623219 MsG0480019711.01.T01:CDS 25.0%
!!! GAATTTGCAGATTTTGAAAT+TGG + Chr4:25623636-25623655 MsG0480019711.01.T01:CDS 25.0%
!!! TAAGAAGATTGATTTGAATC+CGG + Chr4:25623909-25623928 MsG0480019711.01.T01:CDS 25.0%
AATTCTCCATTGAAGAAACT+AGG + Chr4:25622959-25622978 MsG0480019711.01.T01:CDS 30.0%
ACAGAGAAATGTGAATTCAT+TGG + Chr4:25623186-25623205 MsG0480019711.01.T01:CDS 30.0%
AGATTATTATTCAGGATTGC+TGG + Chr4:25624049-25624068 MsG0480019711.01.T01:CDS 30.0%
AGTTTCTTCAATGGAGAATT+AGG - Chr4:25622959-25622978 None:intergenic 30.0%
ATTATTATTCAGGATTGCTG+GGG + Chr4:25624051-25624070 MsG0480019711.01.T01:CDS 30.0%
GATCAATGATTGAGAAATTG+GGG - Chr4:25623108-25623127 None:intergenic 30.0%
GATTATTATTCAGGATTGCT+GGG + Chr4:25624050-25624069 MsG0480019711.01.T01:CDS 30.0%
GTTTCTTCAATGGAGAATTA+GGG - Chr4:25622958-25622977 None:intergenic 30.0%
TCCTCACAATTAAACCAATT+CGG - Chr4:25623421-25623440 None:intergenic 30.0%
! AGTGTAGTGATAATGTGTTA+AGG + Chr4:25623596-25623615 MsG0480019711.01.T01:CDS 30.0%
! CTGTTGAGGTTATTGATAAT+GGG + Chr4:25623452-25623471 MsG0480019711.01.T01:CDS 30.0%
! GTGTAGTGATAATGTGTTAA+GGG + Chr4:25623597-25623616 MsG0480019711.01.T01:CDS 30.0%
! TGTAGTGATAATGTGTTAAG+GGG + Chr4:25623598-25623617 MsG0480019711.01.T01:CDS 30.0%
! TTGGTTTAAAGGCTTTGATT+TGG - Chr4:25623017-25623036 None:intergenic 30.0%
!! AAGAAGATTGATTTGAATCC+GGG + Chr4:25623910-25623929 MsG0480019711.01.T01:CDS 30.0%
!! TGAAATGGGTTTGTTAAGTT+TGG + Chr4:25623534-25623553 MsG0480019711.01.T01:CDS 30.0%
!!! ATTTTATGGTTCGGTTGTTT+CGG + Chr4:25623675-25623694 MsG0480019711.01.T01:CDS 30.0%
!!! GATTGGAACTTTGTTTTATC+TGG + Chr4:25623265-25623284 MsG0480019711.01.T01:CDS 30.0%
!!! TGCAGATTTTGAAATTGGTT+GGG + Chr4:25623641-25623660 MsG0480019711.01.T01:CDS 30.0%
!!! TTGCAGATTTTGAAATTGGT+TGG + Chr4:25623640-25623659 MsG0480019711.01.T01:CDS 30.0%
AAATTGGTTGGGAATGTTGA+GGG + Chr4:25623652-25623671 MsG0480019711.01.T01:CDS 35.0%
ACTTGAACCCTTCTCAAATT+AGG - Chr4:25623502-25623521 None:intergenic 35.0%
AGTTGACATTGTGTGATCAT+AGG + Chr4:25623818-25623837 MsG0480019711.01.T01:CDS 35.0%
ATGGTTGTCCTAATTTGAGA+AGG + Chr4:25623491-25623510 MsG0480019711.01.T01:CDS 35.0%
CATTGAAGAAACTAGGAACA+CGG + Chr4:25622966-25622985 MsG0480019711.01.T01:CDS 35.0%
CCATTATCAATAACCTCAAC+AGG - Chr4:25623454-25623473 None:intergenic 35.0%
CCTGTTGAGGTTATTGATAA+TGG + Chr4:25623451-25623470 MsG0480019711.01.T01:CDS 35.0%
GTTGAATTTACAAGGTCGTT+TGG + Chr4:25623222-25623241 MsG0480019711.01.T01:CDS 35.0%
TAATGTGTTAAGGGGAATTG+CGG + Chr4:25623606-25623625 MsG0480019711.01.T01:CDS 35.0%
TCAATGGAGAATTAGGGTTA+GGG - Chr4:25622952-25622971 None:intergenic 35.0%
TGCTAGGGAGATTATTATTC+AGG + Chr4:25624041-25624060 MsG0480019711.01.T01:CDS 35.0%
TGGTTGTCCTAATTTGAGAA+GGG + Chr4:25623492-25623511 MsG0480019711.01.T01:CDS 35.0%
TTCAATGGAGAATTAGGGTT+AGG - Chr4:25622953-25622972 None:intergenic 35.0%
TTCACATTTCTCTGTGAATC+TGG - Chr4:25623181-25623200 None:intergenic 35.0%
! TGTTGAGGGATTTTATGGTT+CGG + Chr4:25623666-25623685 MsG0480019711.01.T01:CDS 35.0%
!! ATTTGCAAAAGTGTCAGTTG+CGG + Chr4:25623977-25623996 MsG0480019711.01.T01:CDS 35.0%
!! GCAACAACGATTTGGTTTAA+AGG - Chr4:25623028-25623047 None:intergenic 35.0%
!! GGATTTGATAATGGCATGTT+CGG + Chr4:25624072-25624091 MsG0480019711.01.T01:CDS 35.0%
!!! GGATATTGGTTTGACGATTT+TGG + Chr4:25623696-25623715 MsG0480019711.01.T01:CDS 35.0%
CGTGTTCCTAGTTTCTTCAA+TGG - Chr4:25622968-25622987 None:intergenic 40.0%
GAAATTGGTTGGGAATGTTG+AGG + Chr4:25623651-25623670 MsG0480019711.01.T01:CDS 40.0%
GACATTGTGTGATCATAGGA+TGG + Chr4:25623822-25623841 MsG0480019711.01.T01:CDS 40.0%
GAGAATTAGGGTTAGGGTTA+GGG - Chr4:25622946-25622965 None:intergenic 40.0%
GATTGCTGGGGATTTGATAA+TGG + Chr4:25624063-25624082 MsG0480019711.01.T01:CDS 40.0%
GTGTTCTACATTGCAGGAAT+TGG + Chr4:25623564-25623583 MsG0480019711.01.T01:CDS 40.0%
TGTGATCATAGGATGGATGA+TGG + Chr4:25623829-25623848 MsG0480019711.01.T01:CDS 40.0%
TTGAGAAGGGTTCAAGTGAT+TGG + Chr4:25623505-25623524 MsG0480019711.01.T01:CDS 40.0%
TTGATGGGATTAAGGCGATT+GGG + Chr4:25623773-25623792 MsG0480019711.01.T01:CDS 40.0%
TTTGATGGGATTAAGGCGAT+TGG + Chr4:25623772-25623791 MsG0480019711.01.T01:CDS 40.0%
! GCCGAATTGGTTTAATTGTG+AGG + Chr4:25623417-25623436 MsG0480019711.01.T01:CDS 40.0%
! GGGAATGTTGAGGGATTTTA+TGG + Chr4:25623661-25623680 MsG0480019711.01.T01:CDS 40.0%
! TTGTGAAGCTTGAGCTTTGT+GGG + Chr4:25623737-25623756 MsG0480019711.01.T01:CDS 40.0%
!! AGGGAGTTTTGATGGGATTA+AGG + Chr4:25623765-25623784 MsG0480019711.01.T01:CDS 40.0%
!! AGTGATTGGTGCTAGTGAAA+TGG + Chr4:25623519-25623538 MsG0480019711.01.T01:CDS 40.0%
!! ATCATAGGATGGATGATGGA+TGG + Chr4:25623833-25623852 MsG0480019711.01.T01:CDS 40.0%
!! GGGTTAGTTGCTTTAGCTAA+TGG + Chr4:25623472-25623491 MsG0480019711.01.T01:CDS 40.0%
!! GTGATTGGTGCTAGTGAAAT+GGG + Chr4:25623520-25623539 MsG0480019711.01.T01:CDS 40.0%
!! TGAAGAGTGTTCTACATTGC+AGG + Chr4:25623558-25623577 MsG0480019711.01.T01:CDS 40.0%
!! TTTGCAAAAGTGTCAGTTGC+GGG + Chr4:25623978-25623997 MsG0480019711.01.T01:CDS 40.0%
!!! GGCTTTGTTTTCTGTTTGCA+GGG + Chr4:25624017-25624036 MsG0480019711.01.T01:CDS 40.0%
!!! TTTTGGCTCAAGGTTGTAAG+AGG + Chr4:25623713-25623732 MsG0480019711.01.T01:CDS 40.0%
CTTGTGAAGCTTGAGCTTTG+TGG + Chr4:25623736-25623755 MsG0480019711.01.T01:CDS 45.0%
GAACACGGTGGTCTGATTTA+TGG + Chr4:25622981-25623000 MsG0480019711.01.T01:CDS 45.0%
GGAGAATATGCTTCCTGTTG+AGG + Chr4:25623438-25623457 MsG0480019711.01.T01:CDS 45.0%
GGAGAATTAGGGTTAGGGTT+AGG - Chr4:25622947-25622966 None:intergenic 45.0%
TGAAGAAACTAGGAACACGG+TGG + Chr4:25622969-25622988 MsG0480019711.01.T01:CDS 45.0%
TTCTGTTTGCAGGGTTGCTA+GGG + Chr4:25624026-25624045 MsG0480019711.01.T01:CDS 45.0%
TTGCAGCAGCAACAACGATT+TGG - Chr4:25623036-25623055 None:intergenic 45.0%
TTTCTGTTTGCAGGGTTGCT+AGG + Chr4:25624025-25624044 MsG0480019711.01.T01:CDS 45.0%
! GGTTCGGTTGTTTCGGATAT+TGG + Chr4:25623682-25623701 MsG0480019711.01.T01:CDS 45.0%
! GTCGTTTGGTTCGATCGATT+CGG + Chr4:25623236-25623255 MsG0480019711.01.T01:CDS 45.0%
! TTGAGCTTTGTGGGTGTGAA+GGG + Chr4:25623746-25623765 MsG0480019711.01.T01:CDS 45.0%
!! GAAGTGTTGTCAGATGTTGG+AGG + Chr4:25623795-25623814 MsG0480019711.01.T01:CDS 45.0%
!! GATCGATTCGGATTCGTGAT+TGG + Chr4:25623248-25623267 MsG0480019711.01.T01:CDS 45.0%
!! GGTGTGAAGGGAGTTTTGAT+GGG + Chr4:25623758-25623777 MsG0480019711.01.T01:CDS 45.0%
!! TAGGATGGATGATGGATGGA+TGG + Chr4:25623837-25623856 MsG0480019711.01.T01:CDS 45.0%
!! TGGGAAGTGTTGTCAGATGT+TGG + Chr4:25623792-25623811 MsG0480019711.01.T01:CDS 45.0%
!!! CGGCTTTGTTTTCTGTTTGC+AGG + Chr4:25624016-25624035 MsG0480019711.01.T01:CDS 45.0%
!!! GGTTTGACGATTTTGGCTCA+AGG + Chr4:25623703-25623722 MsG0480019711.01.T01:CDS 45.0%
AAATGCAGCCTCTCAAGTGC+AGG - Chr4:25623961-25623980 None:intergenic 50.0%
CCCAAATACTCATCGAGTCC+CGG - Chr4:25623931-25623950 None:intergenic 50.0%
CCGGGACTCGATGAGTATTT+GGG + Chr4:25623928-25623947 MsG0480019711.01.T01:CDS 50.0%
GTTCTTGTCCTGCACTTGAG+AGG + Chr4:25623950-25623969 MsG0480019711.01.T01:CDS 50.0%
TCCGGGACTCGATGAGTATT+TGG + Chr4:25623927-25623946 MsG0480019711.01.T01:CDS 50.0%
TCGGCTTTGCAACTGTTTGC+AGG + Chr4:25624091-25624110 MsG0480019711.01.T01:CDS 50.0%
! CTTGAGCTTTGTGGGTGTGA+AGG + Chr4:25623745-25623764 MsG0480019711.01.T01:CDS 50.0%
!! GCGGGATAAGAAGAGCGTTT+CGG + Chr4:25623996-25624015 MsG0480019711.01.T01:CDS 50.0%
!! GGGTGTGAAGGGAGTTTTGA+TGG + Chr4:25623757-25623776 MsG0480019711.01.T01:CDS 50.0%
ATTCTGGGTCGTCGCCGAAT+TGG + Chr4:25623404-25623423 MsG0480019711.01.T01:CDS 55.0%
TAAGGGGAATTGCGGCGTGT+GGG + Chr4:25623614-25623633 MsG0480019711.01.T01:CDS 55.0%
TTAAGGGGAATTGCGGCGTG+TGG + Chr4:25623613-25623632 MsG0480019711.01.T01:CDS 55.0%
!! GGATGATGGATGGATGGCTG+CGG + Chr4:25623843-25623862 MsG0480019711.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 25622896 25624116 25622896 ID=MsG0480019711.01;Name=MsG0480019711.01
Chr4 mRNA 25622896 25624116 25622896 ID=MsG0480019711.01.T01;Parent=MsG0480019711.01;Name=MsG0480019711.01.T01;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|406
Chr4 exon 25622896 25624116 25622896 ID=MsG0480019711.01.T01:exon:4782;Parent=MsG0480019711.01.T01
Chr4 CDS 25622896 25624116 25622896 ID=MsG0480019711.01.T01:cds;Parent=MsG0480019711.01.T01
Gene Sequence

>MsG0480019711.01.T01

ATGTCGTTTTCAACGGAGAAGAAGAATCATCATTCTCAGAAAGAAAACCCTAACCCTAACCCTAATTCTCCATTGAAGAAACTAGGAACACGGTGGTCTGATTTATGGCTCAAACACACCAAATCAAAGCCTTTAAACCAAATCGTTGTTGCTGCTGCAATGCAACAGCTTCACTCTCTTTCATCACCTCGAAAATCAAACACTAATTTCCCCAATTTCTCAATCATTGATCAAACCCTTTTGTTATCTGATGAAATTCTTCTCAACATTCTCTCAAAGCTTCCAGATTCACAGAGAAATGTGAATTCATTGGTTTGTAAAAGATGGTTGAATTTACAAGGTCGTTTGGTTCGATCGATTCGGATTCGTGATTGGAACTTTGTTTTATCTGGTAGATTGATTTATAGGTTCCCTAATCTTAATCATGTTGATTTGATTCATGGGTCATTGATTTTAACACAAAGTTCGAATATTTTGATGAGTAGTAATGTTTTGAATATGTATATTGATTCTGGGTCGTCGCCGAATTGGTTTAATTGTGAGGAGAATATGCTTCCTGTTGAGGTTATTGATAATGGGTTAGTTGCTTTAGCTAATGGTTGTCCTAATTTGAGAAGGGTTCAAGTGATTGGTGCTAGTGAAATGGGTTTGTTAAGTTTGGCTGAAGAGTGTTCTACATTGCAGGAATTGGAGTTGCAGAAGTGTAGTGATAATGTGTTAAGGGGAATTGCGGCGTGTGGGAATTTGCAGATTTTGAAATTGGTTGGGAATGTTGAGGGATTTTATGGTTCGGTTGTTTCGGATATTGGTTTGACGATTTTGGCTCAAGGTTGTAAGAGGCTTGTGAAGCTTGAGCTTTGTGGGTGTGAAGGGAGTTTTGATGGGATTAAGGCGATTGGGAAGTGTTGTCAGATGTTGGAGGAGTTGACATTGTGTGATCATAGGATGGATGATGGATGGATGGCTGCGGTTTCGTATTGTGAGAATTTGAAAACGTTGAGTTTACAGTCTTGTAAGAAGATTGATTTGAATCCGGGACTCGATGAGTATTTGGGTTCTTGTCCTGCACTTGAGAGGCTGCATTTGCAAAAGTGTCAGTTGCGGGATAAGAAGAGCGTTTCGGCTTTGTTTTCTGTTTGCAGGGTTGCTAGGGAGATTATTATTCAGGATTGCTGGGGATTTGATAATGGCATGTTCGGCTTTGCAACTGTTTGCAGGTAA

Protein sequence

>MsG0480019711.01.T01

MSFSTEKKNHHSQKENPNPNPNSPLKKLGTRWSDLWLKHTKSKPLNQIVVAAAMQQLHSLSSPRKSNTNFPNFSIIDQTLLLSDEILLNILSKLPDSQRNVNSLVCKRWLNLQGRLVRSIRIRDWNFVLSGRLIYRFPNLNHVDLIHGSLILTQSSNILMSSNVLNMYIDSGSSPNWFNCEENMLPVEVIDNGLVALANGCPNLRRVQVIGASEMGLLSLAEECSTLQELELQKCSDNVLRGIAACGNLQILKLVGNVEGFYGSVVSDIGLTILAQGCKRLVKLELCGCEGSFDGIKAIGKCCQMLEELTLCDHRMDDGWMAAVSYCENLKTLSLQSCKKIDLNPGLDEYLGSCPALERLHLQKCQLRDKKSVSALFSVCRVAREIIIQDCWGFDNGMFGFATVCR*