AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039179.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039179.01.T01 MTR_7g067340 99.429 175 1 0 57 231 333 507 5.24e-124 362
MsG0780039179.01.T01 MTR_4g015260 78.286 175 38 0 57 231 195 369 6.45e-99 293
MsG0780039179.01.T01 MTR_4g015260 78.286 175 38 0 57 231 330 504 1.69e-97 294
MsG0780039179.01.T01 MTR_4g015250 49.153 59 18 1 180 238 1 47 1.58e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039179.01.T01 AT5G01220 76.571 175 41 0 57 231 329 503 4.78e-97 293
MsG0780039179.01.T01 AT5G01220 85.714 91 13 0 57 147 329 419 9.11e-48 164

Find 76 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATACAATGCTGCTATT+TGG 0.214966 7:-59283768 MsG0780039179.01.T01:CDS
ACTAGGGTCATGAAGGATTT+AGG 0.220354 7:+59283491 None:intergenic
TTCATTTCCAAAATGCAAAT+TGG 0.243632 7:-59286278 None:intergenic
AACACTTGGCTTCGTTGTTT+TGG 0.243869 7:-59284031 MsG0780039179.01.T01:CDS
GCTACCTCTGAAATTATTCT+TGG 0.256331 7:+59286199 None:intergenic
GCATTCATATTTCTGAATTA+AGG 0.279591 7:-59283578 MsG0780039179.01.T01:three_prime_UTR
TGATCCGCGGGAATTATATC+TGG 0.313869 7:+59283958 None:intergenic
ACAATGCTGCTATTTGGTTC+TGG 0.356155 7:-59283762 MsG0780039179.01.T01:CDS
GCTTAGGATTGTTCCTTGCC+TGG 0.377695 7:-59283638 MsG0780039179.01.T01:CDS
ATGAAAGCAACTCGAGCTTC+AGG 0.388762 7:+59284837 None:intergenic
GCAGTATTCACAGGAATGTT+AGG 0.393518 7:-59284117 MsG0780039179.01.T01:CDS
TCAACTCTTTGTCGAACAAA+AGG 0.396746 7:+59283869 None:intergenic
AATGCCTTAGGACTGTCAAT+AGG 0.397414 7:+59283444 None:intergenic
CAACTCTTTGTCGAACAAAA+GGG 0.406801 7:+59283870 None:intergenic
AAATTCAGCTTTCCCTCCCT+TGG 0.410675 7:-59286255 MsG0780039179.01.T01:CDS
TAAGTAAACGTTCCAAGCTT+AGG 0.417712 7:-59283654 MsG0780039179.01.T01:CDS
CTTTACACTGAAACAAGATT+AGG 0.418400 7:+59283528 None:intergenic
CACTGGTACATGGGTATGAT+AGG 0.419410 7:+59285964 None:intergenic
AAAAGCTGCACGTAATGAAA+TGG 0.426643 7:-59283833 MsG0780039179.01.T01:CDS
ACGTTTACTGATCCATTGTA+AGG 0.427187 7:+59283711 None:intergenic
AGGCAGCTTATAATGTGATA+TGG 0.430351 7:-59283558 MsG0780039179.01.T01:three_prime_UTR
TCAGAACGTACCCCTCTCTT+TGG 0.431253 7:-59286230 MsG0780039179.01.T01:CDS
GTATGATAGGACATGACAAT+TGG 0.454132 7:+59285977 None:intergenic
CTGAAACTTACACTGGTACA+TGG 0.458251 7:+59285954 None:intergenic
CCGGCGCGTGCTGCCACCAC+AGG 0.469518 7:+59283988 None:intergenic
CGAGTTGCTTTCATCGGAGA+TGG 0.480961 7:-59284828 MsG0780039179.01.T01:CDS
CTATAGTTAACTTGTGGTGA+TGG 0.492133 7:+59283683 None:intergenic
AACATTCCTGTGAATACTGC+AGG 0.502201 7:+59284120 None:intergenic
ACCGGCTATCTCTATAATCC+AGG 0.510391 7:-59283925 MsG0780039179.01.T01:CDS
GAGCTAGAGAAAATGTTTGA+AGG 0.513757 7:-59284147 MsG0780039179.01.T01:CDS
GCGGATCAAGAAGGTAAAAC+CGG 0.513987 7:-59283943 MsG0780039179.01.T01:CDS
ATGCCTTAGGACTGTCAATA+GGG 0.515234 7:+59283445 None:intergenic
GCAAGGAACAATCCTAAGCT+TGG 0.517425 7:+59283642 None:intergenic
CCTTCAGAGTCAGAAACACT+TGG 0.519010 7:-59284045 MsG0780039179.01.T01:CDS
AATTATATCTGGAATGCCTC+CGG 0.526025 7:+59283969 None:intergenic
GATTTACACTAGGGTCATGA+AGG 0.533188 7:+59283484 None:intergenic
CTCTCTCAAGCATATGCTAG+TGG 0.533783 7:-59284084 MsG0780039179.01.T01:CDS
GTCTTATGTTACGTCAAGCC+AGG 0.546587 7:+59283620 None:intergenic
AAGCAGTCTTCAAGATCACC+TGG 0.548870 7:+59283907 None:intergenic
CACAGGTATCCCCGAAGACA+TGG 0.550551 7:+59284005 None:intergenic
GAATAATTTCAGAGGTAGCT+CGG 0.552361 7:-59286195 MsG0780039179.01.T01:intron
AGGGGTACGTTCTGATACCA+AGG 0.553785 7:+59286238 None:intergenic
GTGGTGGCAGCACGCGCCGG+AGG 0.554010 7:-59283985 MsG0780039179.01.T01:CDS
ACCTGGATTATAGAGATAGC+CGG 0.556630 7:+59283924 None:intergenic
TACAAAATAGATTTACACTA+GGG 0.558053 7:+59283475 None:intergenic
AACTCTTTGTCGAACAAAAG+GGG 0.558837 7:+59283871 None:intergenic
TCATCGGAGATGGACCGTAC+AGG 0.559868 7:-59284818 MsG0780039179.01.T01:intron
TGAAACTTACACTGGTACAT+GGG 0.562739 7:+59285955 None:intergenic
TATTATTGAGGCCCTTACAA+TGG 0.565233 7:-59283723 MsG0780039179.01.T01:CDS
CCTGTGGTGGCAGCACGCGC+CGG 0.571301 7:-59283988 MsG0780039179.01.T01:CDS
GAAGCTCGAGTTGCTTTCAT+CGG 0.571976 7:-59284834 MsG0780039179.01.T01:CDS
TGGACTGAGTGCCAAAGAGA+GGG 0.574015 7:+59286219 None:intergenic
CCAAGTGTTTCTGACTCTGA+AGG 0.579198 7:+59284045 None:intergenic
GGTATGCCTGCAGTATTCAC+AGG 0.583017 7:-59284126 MsG0780039179.01.T01:CDS
CATCATCTATAGTTAACTTG+TGG 0.591830 7:+59283677 None:intergenic
GTATTCACAGGAATGTTAGG+AGG 0.591955 7:-59284114 MsG0780039179.01.T01:CDS
AGAAAAGAGCGATATTATTG+AGG 0.595039 7:-59283735 MsG0780039179.01.T01:CDS
ATACAAAATAGATTTACACT+AGG 0.597441 7:+59283474 None:intergenic
GTCATAATAAGTCACCTGTA+CGG 0.604278 7:+59284804 None:intergenic
TTGGACTGAGTGCCAAAGAG+AGG 0.612058 7:+59286218 None:intergenic
TATTCACAGGAATGTTAGGA+GGG 0.613060 7:-59284113 MsG0780039179.01.T01:CDS
TTGGAAGGCAGCCACGCGAA+AGG 0.615424 7:-59283800 MsG0780039179.01.T01:CDS
TTCATTTCGAACCTTTCGCG+TGG 0.617641 7:+59283789 None:intergenic
CGTTTACTGATCCATTGTAA+GGG 0.618048 7:+59283712 None:intergenic
ATGTTACGTCAAGCCAGGCA+AGG 0.620985 7:+59283625 None:intergenic
AAAGAGTTGAGAGAAACCAT+AGG 0.627134 7:-59283856 MsG0780039179.01.T01:CDS
CATGTCTTCGGGGATACCTG+TGG 0.630437 7:-59284004 MsG0780039179.01.T01:CDS
ATAATTCCCGCGGATCAAGA+AGG 0.633004 7:-59283952 MsG0780039179.01.T01:CDS
ATTCACAGGAATGTTAGGAG+GGG 0.648550 7:-59284112 MsG0780039179.01.T01:CDS
TACGTTCTGATACCAAGGGA+GGG 0.649573 7:+59286243 None:intergenic
CAGTCCAAGAATAATTTCAG+AGG 0.651095 7:-59286203 MsG0780039179.01.T01:CDS
GTCTTCGGGGATACCTGTGG+TGG 0.652844 7:-59284001 MsG0780039179.01.T01:CDS
CATTCCAGATATAATTCCCG+CGG 0.668945 7:-59283962 MsG0780039179.01.T01:CDS
GGACTGAGTGCCAAAGAGAG+GGG 0.675125 7:+59286220 None:intergenic
GGGGTACGTTCTGATACCAA+GGG 0.688280 7:+59286239 None:intergenic
GTACGTTCTGATACCAAGGG+AGG 0.707111 7:+59286242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACTTAATTAGATTTAT+CGG + Chr7:59285351-59285370 None:intergenic 15.0%
!! ACGTCAAAATTTAATAAATA+AGG + Chr7:59283616-59283635 None:intergenic 15.0%
!!! TTTAAAATATAAGCATTTCT+CGG - Chr7:59284419-59284438 MsG0780039179.01.T01:intron 15.0%
!! AATAACGAAAAAATGACAAA+AGG + Chr7:59284598-59284617 None:intergenic 20.0%
!! ATAAACAATTATGAGTGTTT+GGG - Chr7:59285141-59285160 MsG0780039179.01.T01:intron 20.0%
!! ATACAAAATAGATTTACACT+AGG + Chr7:59286249-59286268 None:intergenic 20.0%
!! ATATTTACCAGTTTATAACA+CGG - Chr7:59283810-59283829 MsG0780039179.01.T01:CDS 20.0%
!! ATGAAATGGAAAAATTTGAT+TGG - Chr7:59285901-59285920 MsG0780039179.01.T01:intron 20.0%
!! CCAAATAATATATCTTTCAT+AGG - Chr7:59284792-59284811 MsG0780039179.01.T01:intron 20.0%
!! CCTATGAAAGATATATTATT+TGG + Chr7:59284795-59284814 None:intergenic 20.0%
!! TAAGATTAAAAATAAGCTGT+TGG + Chr7:59284112-59284131 None:intergenic 20.0%
!! TACAAAATAGATTTACACTA+GGG + Chr7:59286248-59286267 None:intergenic 20.0%
!!! AAGAATAAAAAGTACATTCA+TGG + Chr7:59285000-59285019 None:intergenic 20.0%
!!! CTTTTAAGCTAATTTCAATT+AGG - Chr7:59285207-59285226 MsG0780039179.01.T01:intron 20.0%
! AAAATATTGAGAATGAGATG+TGG + Chr7:59285447-59285466 None:intergenic 25.0%
! AAATTATGTACTGCTTATGT+TGG - Chr7:59283894-59283913 MsG0780039179.01.T01:CDS 25.0%
! AATGGAAAAATTTGATTGGA+AGG - Chr7:59285905-59285924 MsG0780039179.01.T01:intron 25.0%
! ATTGTTAATTATGATCACTC+TGG - Chr7:59285507-59285526 MsG0780039179.01.T01:intron 25.0%
! CAATTTGTATTATCTAGAGA+TGG + Chr7:59285491-59285510 None:intergenic 25.0%
! CATAAACAATTATGAGTGTT+TGG - Chr7:59285140-59285159 MsG0780039179.01.T01:intron 25.0%
! CTTTCTATTAAACAACCTTA+GGG + Chr7:59283970-59283989 None:intergenic 25.0%
! GAAAACATGATATTTGATCA+CGG + Chr7:59284042-59284061 None:intergenic 25.0%
! GAAAGATATATTATTTGGCA+TGG + Chr7:59284790-59284809 None:intergenic 25.0%
! GAACACAGATTATACTTTAT+AGG - Chr7:59285246-59285265 MsG0780039179.01.T01:intron 25.0%
!! AAAGAGTTTAGGTTTATCAA+AGG - Chr7:59284713-59284732 MsG0780039179.01.T01:intron 25.0%
!! AAGAGTTTAGGTTTATCAAA+GGG - Chr7:59284714-59284733 MsG0780039179.01.T01:intron 25.0%
!! GCATTCATATTTCTGAATTA+AGG - Chr7:59286142-59286161 MsG0780039179.01.T01:intron 25.0%
!! TGTGAGCATATCATAAATTT+TGG - Chr7:59284244-59284263 MsG0780039179.01.T01:intron 25.0%
!! TTTCATATTTAGAACACGTT+TGG - Chr7:59285079-59285098 MsG0780039179.01.T01:intron 25.0%
!! TTTTGACGTTAATAAGCATA+AGG - Chr7:59283627-59283646 MsG0780039179.01.T01:exon 25.0%
!!! GTATTACAGCTTTTAACTAA+TGG - Chr7:59284970-59284989 MsG0780039179.01.T01:intron 25.0%
AAAGAGAATAAGGTTATGCT+TGG + Chr7:59285377-59285396 None:intergenic 30.0%
AACAATACAATGCTGCTATT+TGG - Chr7:59285952-59285971 MsG0780039179.01.T01:intron 30.0%
ACAAATATTCGAGACCATAT+AGG + Chr7:59284227-59284246 None:intergenic 30.0%
AGAAAAGAGCGATATTATTG+AGG - Chr7:59285985-59286004 MsG0780039179.01.T01:CDS 30.0%
AGAAAATCCATATTCCATGA+TGG + Chr7:59285057-59285076 None:intergenic 30.0%
AGCCATTATATGATTTGAGA+TGG + Chr7:59285029-59285048 None:intergenic 30.0%
ATATAAAGCGACTAGATAAG+AGG + Chr7:59284379-59284398 None:intergenic 30.0%
ATGAAATGCGATTAAGACTA+AGG - Chr7:59284566-59284585 MsG0780039179.01.T01:intron 30.0%
CCTAAGGTTGTTTAATAGAA+AGG - Chr7:59283968-59283987 MsG0780039179.01.T01:CDS 30.0%
CCTTTCTATTAAACAACCTT+AGG + Chr7:59283971-59283990 None:intergenic 30.0%
CTCCATCTCAAATCATATAA+TGG - Chr7:59285024-59285043 MsG0780039179.01.T01:intron 30.0%
CTTTACACTGAAACAAGATT+AGG + Chr7:59286195-59286214 None:intergenic 30.0%
GTTGTACTTTATAAACCCTA+AGG - Chr7:59283952-59283971 MsG0780039179.01.T01:CDS 30.0%
TAAAAGCTGTAATACACAAC+TGG + Chr7:59284965-59284984 None:intergenic 30.0%
TCATCTTATTCTTACAGCAA+CGG - Chr7:59284642-59284661 MsG0780039179.01.T01:intron 30.0%
TCCTCAAAAGAAAGAGAATA+AGG + Chr7:59285387-59285406 None:intergenic 30.0%
TCGCTTTATATATGCTTAGT+TGG - Chr7:59284388-59284407 MsG0780039179.01.T01:intron 30.0%
TTAATCGCATTTCATGTGAA+CGG + Chr7:59284561-59284580 None:intergenic 30.0%
TTCCAAGATATACCTTTAGT+TGG - Chr7:59284147-59284166 MsG0780039179.01.T01:CDS 30.0%
! ACCTTATTCTCTTTCTTTTG+AGG - Chr7:59285383-59285402 MsG0780039179.01.T01:intron 30.0%
! CATCATCTATAGTTAACTTG+TGG + Chr7:59286046-59286065 None:intergenic 30.0%
! GACTTATGAACAGTTTGTTT+GGG - Chr7:59285105-59285124 MsG0780039179.01.T01:intron 30.0%
! TGACTTATGAACAGTTTGTT+TGG - Chr7:59285104-59285123 MsG0780039179.01.T01:intron 30.0%
! TTATATGATTTGAGATGGAG+AGG + Chr7:59285024-59285043 None:intergenic 30.0%
!! TTCTCTTTCTTTTGAGGATT+TGG - Chr7:59285389-59285408 MsG0780039179.01.T01:intron 30.0%
!!! CTACCTTATTTTCAGGTTTT+TGG - Chr7:59283689-59283708 MsG0780039179.01.T01:CDS 30.0%
!!! CTTGCTTACTTTTTCCTATA+TGG - Chr7:59284210-59284229 MsG0780039179.01.T01:intron 30.0%
!!! TCTGATACTACCTTATTTTC+AGG - Chr7:59283682-59283701 MsG0780039179.01.T01:CDS 30.0%
AAAAGCTGCACGTAATGAAA+TGG - Chr7:59285887-59285906 MsG0780039179.01.T01:intron 35.0%
AAAGAGTTGAGAGAAACCAT+AGG - Chr7:59285864-59285883 MsG0780039179.01.T01:intron 35.0%
AAATCCATATTCCATGATGG+CGG + Chr7:59285054-59285073 None:intergenic 35.0%
AACTCTTTGTCGAACAAAAG+GGG + Chr7:59285852-59285871 None:intergenic 35.0%
AAGATATACCTTTAGTTGGC+TGG - Chr7:59284151-59284170 MsG0780039179.01.T01:CDS 35.0%
AATCTGACTGAAACTTACAC+TGG + Chr7:59283776-59283795 None:intergenic 35.0%
ACGTTTACTGATCCATTGTA+AGG + Chr7:59286012-59286031 None:intergenic 35.0%
AGGCAGCTTATAATGTGATA+TGG - Chr7:59286162-59286181 MsG0780039179.01.T01:intron 35.0%
ATAATACATGCATCATCACC+AGG - Chr7:59283560-59283579 MsG0780039179.01.T01:three_prime_UTR 35.0%
ATCTGTGTTCATAAGCTCTT+TGG + Chr7:59285236-59285255 None:intergenic 35.0%
ATGAGTTCTTTAACACTACC+AGG - Chr7:59285547-59285566 MsG0780039179.01.T01:intron 35.0%
CAACAATATGATGTCTGATC+TGG - Chr7:59283859-59283878 MsG0780039179.01.T01:CDS 35.0%
CAACTCTTTGTCGAACAAAA+GGG + Chr7:59285853-59285872 None:intergenic 35.0%
CAGTCCAAGAATAATTTCAG+AGG - Chr7:59283517-59283536 MsG0780039179.01.T01:three_prime_UTR 35.0%
CGTTTACTGATCCATTGTAA+GGG + Chr7:59286011-59286030 None:intergenic 35.0%
CTTGGAGTTGAAAAGAGTTT+AGG - Chr7:59284702-59284721 MsG0780039179.01.T01:intron 35.0%
CTTTGTCAATGCAGCAAAAT+TGG - Chr7:59284447-59284466 MsG0780039179.01.T01:intron 35.0%
GAATAATTTCAGAGGTAGCT+CGG - Chr7:59283525-59283544 MsG0780039179.01.T01:three_prime_UTR 35.0%
GAGCTAGAGAAAATGTTTGA+AGG - Chr7:59285573-59285592 MsG0780039179.01.T01:intron 35.0%
GATGATGCATGTATTATGTC+AGG + Chr7:59283557-59283576 None:intergenic 35.0%
GCACCAAAAACCTGAAAATA+AGG + Chr7:59283695-59283714 None:intergenic 35.0%
GGTATATCTTGGAATGTATC+TGG + Chr7:59284141-59284160 None:intergenic 35.0%
GTATGATAGGACATGACAAT+TGG + Chr7:59283746-59283765 None:intergenic 35.0%
GTCATAATAAGTCACCTGTA+CGG + Chr7:59284919-59284938 None:intergenic 35.0%
TAAGTAAACGTTCCAAGCTT+AGG - Chr7:59286066-59286085 MsG0780039179.01.T01:intron 35.0%
TATTATTGAGGCCCTTACAA+TGG - Chr7:59285997-59286016 MsG0780039179.01.T01:CDS 35.0%
TATTCACAGGAATGTTAGGA+GGG - Chr7:59285607-59285626 MsG0780039179.01.T01:intron 35.0%
TCAACTCTTTGTCGAACAAA+AGG + Chr7:59285854-59285873 None:intergenic 35.0%
TGAAACTTACACTGGTACAT+GGG + Chr7:59283768-59283787 None:intergenic 35.0%
TGAGTTCTTTAACACTACCA+GGG - Chr7:59285548-59285567 MsG0780039179.01.T01:intron 35.0%
TGATATTTGATCACGGAGTT+CGG + Chr7:59284035-59284054 None:intergenic 35.0%
! AAACCCTTGATAGTTCATGT+TGG - Chr7:59284675-59284694 MsG0780039179.01.T01:intron 35.0%
! AATTATATCTGGAATGCCTC+CGG + Chr7:59285754-59285773 None:intergenic 35.0%
! AGCCAACTAAAGGTATATCT+TGG + Chr7:59284152-59284171 None:intergenic 35.0%
! GTATCTTTTACCTTTGAACC+AGG - Chr7:59284078-59284097 MsG0780039179.01.T01:CDS 35.0%
!! AAGATTCGTCTTTGGAACAA+AGG - Chr7:59284506-59284525 MsG0780039179.01.T01:intron 35.0%
!! CAATTTTGCTGCATTGACAA+AGG + Chr7:59284449-59284468 None:intergenic 35.0%
!! CTATAGTTAACTTGTGGTGA+TGG + Chr7:59286040-59286059 None:intergenic 35.0%
!! GCTACCTCTGAAATTATTCT+TGG + Chr7:59283524-59283543 None:intergenic 35.0%
!! TATGTTGGAAGTGTTTGACA+TGG - Chr7:59283909-59283928 MsG0780039179.01.T01:CDS 35.0%
!! TCTTTCTTTTGAGGATTTGG+AGG - Chr7:59285392-59285411 MsG0780039179.01.T01:intron 35.0%
AACATTCCTGTGAATACTGC+AGG + Chr7:59285603-59285622 None:intergenic 40.0%
ACCTGGATTATAGAGATAGC+CGG + Chr7:59285799-59285818 None:intergenic 40.0%
ACTAGGGTCATGAAGGATTT+AGG + Chr7:59286232-59286251 None:intergenic 40.0%
ATTCACAGGAATGTTAGGAG+GGG - Chr7:59285608-59285627 MsG0780039179.01.T01:intron 40.0%
ATTTCATGTGAACGGAATCG+TGG + Chr7:59284553-59284572 None:intergenic 40.0%
CAAAGACGAATCTTGTTAGC+TGG + Chr7:59284500-59284519 None:intergenic 40.0%
CAGCTAACAAGATTCGTCTT+TGG - Chr7:59284498-59284517 MsG0780039179.01.T01:intron 40.0%
CATTCCAGATATAATTCCCG+CGG - Chr7:59285758-59285777 MsG0780039179.01.T01:intron 40.0%
CGTCCAACATGAACTATCAA+GGG + Chr7:59284681-59284700 None:intergenic 40.0%
CTGAAACTTACACTGGTACA+TGG + Chr7:59283769-59283788 None:intergenic 40.0%
GATTTACACTAGGGTCATGA+AGG + Chr7:59286239-59286258 None:intergenic 40.0%
GCAGTATTCACAGGAATGTT+AGG - Chr7:59285603-59285622 MsG0780039179.01.T01:intron 40.0%
GTAAGAGCCGTGTTATAAAC+TGG + Chr7:59283820-59283839 None:intergenic 40.0%
GTATTCACAGGAATGTTAGG+AGG - Chr7:59285606-59285625 MsG0780039179.01.T01:intron 40.0%
TGAACTATCAAGGGTTTCTC+AGG + Chr7:59284672-59284691 None:intergenic 40.0%
TGTCAATGCAGCAAAATTGG+TGG - Chr7:59284450-59284469 MsG0780039179.01.T01:intron 40.0%
TGTTTGACACCTGAACCAAA+TGG - Chr7:59284836-59284855 MsG0780039179.01.T01:CDS 40.0%
! AACACTTGGCTTCGTTGTTT+TGG - Chr7:59285689-59285708 MsG0780039179.01.T01:intron 40.0%
! ACAATGCTGCTATTTGGTTC+TGG - Chr7:59285958-59285977 MsG0780039179.01.T01:intron 40.0%
! ATTACGTGCAGCTTTTCCTA+TGG + Chr7:59285883-59285902 None:intergenic 40.0%
! CCTTGATAGTTCATGTTGGA+CGG - Chr7:59284679-59284698 MsG0780039179.01.T01:intron 40.0%
!! CTGAACCAAATGGTTTTGCA+GGG - Chr7:59284846-59284865 MsG0780039179.01.T01:CDS 40.0%
AAATTCAGCTTTCCCTCCCT+TGG - Chr7:59283465-59283484 MsG0780039179.01.T01:three_prime_UTR 45.0%
AAGCAGTCTTCAAGATCACC+TGG + Chr7:59285816-59285835 None:intergenic 45.0%
ACCGGCTATCTCTATAATCC+AGG - Chr7:59285795-59285814 MsG0780039179.01.T01:intron 45.0%
ATAATGGCTAACCGCCATCA+TGG - Chr7:59285040-59285059 MsG0780039179.01.T01:intron 45.0%
ATAATTCCCGCGGATCAAGA+AGG - Chr7:59285768-59285787 MsG0780039179.01.T01:intron 45.0%
ATAGTTCATGTTGGACGGCT+TGG - Chr7:59284684-59284703 MsG0780039179.01.T01:intron 45.0%
ATGAAAGCAACTCGAGCTTC+AGG + Chr7:59284886-59284905 None:intergenic 45.0%
CACTGGTACATGGGTATGAT+AGG + Chr7:59283759-59283778 None:intergenic 45.0%
CATGACCCTGCAAAACCATT+TGG + Chr7:59284854-59284873 None:intergenic 45.0%
CCGTCCAACATGAACTATCA+AGG + Chr7:59284682-59284701 None:intergenic 45.0%
CCTTCAGAGTCAGAAACACT+TGG - Chr7:59285675-59285694 MsG0780039179.01.T01:intron 45.0%
CGTACTTATGACCACCACAT+CGG + Chr7:59284182-59284201 None:intergenic 45.0%
CTAACCGCCATCATGGAATA+TGG - Chr7:59285047-59285066 MsG0780039179.01.T01:intron 45.0%
CTCTCTCAAGCATATGCTAG+TGG - Chr7:59285636-59285655 MsG0780039179.01.T01:intron 45.0%
GCAAGGAACAATCCTAAGCT+TGG + Chr7:59286081-59286100 None:intergenic 45.0%
GCGGATCAAGAAGGTAAAAC+CGG - Chr7:59285777-59285796 MsG0780039179.01.T01:intron 45.0%
GGACTGATATCACTAGACAG+AGG + Chr7:59285426-59285445 None:intergenic 45.0%
GTCTTATGTTACGTCAAGCC+AGG + Chr7:59286103-59286122 None:intergenic 45.0%
GTTCTTTAACACTACCAGGG+AGG - Chr7:59285551-59285570 MsG0780039179.01.T01:intron 45.0%
TACGTTCTGATACCAAGGGA+GGG + Chr7:59283480-59283499 None:intergenic 45.0%
TCATCACCAGGCATAATGGT+TGG - Chr7:59283572-59283591 MsG0780039179.01.T01:three_prime_UTR 45.0%
TGATCCGCGGGAATTATATC+TGG + Chr7:59285765-59285784 None:intergenic 45.0%
TGCATCATCACCAGGCATAA+TGG - Chr7:59283568-59283587 MsG0780039179.01.T01:three_prime_UTR 45.0%
TTCATTTCGAACCTTTCGCG+TGG + Chr7:59285934-59285953 None:intergenic 45.0%
! CCAAGTGTTTCTGACTCTGA+AGG + Chr7:59285678-59285697 None:intergenic 45.0%
! CCTGCAAAACCATTTGGTTC+AGG + Chr7:59284848-59284867 None:intergenic 45.0%
! GAAGCTCGAGTTGCTTTCAT+CGG - Chr7:59284886-59284905 MsG0780039179.01.T01:intron 45.0%
! GGTTTTACCTTCTTGATCCG+CGG + Chr7:59285778-59285797 None:intergenic 45.0%
! GTTTTACCTTCTTGATCCGC+GGG + Chr7:59285777-59285796 None:intergenic 45.0%
!! CAAATGGTTTTGCAGGGTCA+TGG - Chr7:59284852-59284871 MsG0780039179.01.T01:CDS 45.0%
!! CCTGAACCAAATGGTTTTGC+AGG - Chr7:59284845-59284864 MsG0780039179.01.T01:CDS 45.0%
!!! ACTTGGCTTCGTTGTTTTGG+AGG - Chr7:59285692-59285711 MsG0780039179.01.T01:intron 45.0%
!!! TGTTTTGGAGGCCATGTCTT+CGG - Chr7:59285704-59285723 MsG0780039179.01.T01:intron 45.0%
AAGCTGTTGGAACAGCAACC+TGG + Chr7:59284099-59284118 None:intergenic 50.0%
ATGTTACGTCAAGCCAGGCA+AGG + Chr7:59286098-59286117 None:intergenic 50.0%
CATGTGAACGGAATCGTGGA+TGG + Chr7:59284549-59284568 None:intergenic 50.0%
CATTGGGAGGGATCTTCAAG+CGG - Chr7:59284325-59284344 MsG0780039179.01.T01:intron 50.0%
CGGTTTCACCAGCCAACTAA+AGG + Chr7:59284162-59284181 None:intergenic 50.0%
GCTTAGGATTGTTCCTTGCC+TGG - Chr7:59286082-59286101 MsG0780039179.01.T01:intron 50.0%
GGAACAGCAACCTGGTTCAA+AGG + Chr7:59284091-59284110 None:intergenic 50.0%
GGGGTACGTTCTGATACCAA+GGG + Chr7:59283484-59283503 None:intergenic 50.0%
GGTATGCCTGCAGTATTCAC+AGG - Chr7:59285594-59285613 MsG0780039179.01.T01:intron 50.0%
GTACGTTCTGATACCAAGGG+AGG + Chr7:59283481-59283500 None:intergenic 50.0%
GTCGGAGACATAGACACACT+TGG - Chr7:59284009-59284028 MsG0780039179.01.T01:CDS 50.0%
TCAGAACGTACCCCTCTCTT+TGG - Chr7:59283490-59283509 MsG0780039179.01.T01:three_prime_UTR 50.0%
TGATGCAGCTTCTCTGCAGT+CGG - Chr7:59283991-59284010 MsG0780039179.01.T01:CDS 50.0%
TGCAGACCAACCATTATGCC+TGG + Chr7:59283581-59283600 None:intergenic 50.0%
TGGACTGAGTGCCAAAGAGA+GGG + Chr7:59283504-59283523 None:intergenic 50.0%
TTGGACTGAGTGCCAAAGAG+AGG + Chr7:59283505-59283524 None:intergenic 50.0%
! AGGGGTACGTTCTGATACCA+AGG + Chr7:59283485-59283504 None:intergenic 50.0%
! CGAGTTGCTTTCATCGGAGA+TGG - Chr7:59284892-59284911 MsG0780039179.01.T01:intron 50.0%
!! CATTTTCTCTAGCTCCTCCC+TGG + Chr7:59285568-59285587 None:intergenic 50.0%
!! TGGTGCCATCTGTTGCCATT+GGG - Chr7:59284309-59284328 MsG0780039179.01.T01:intron 50.0%
!! TTTTGGAGGCCATGTCTTCG+GGG - Chr7:59285706-59285725 MsG0780039179.01.T01:intron 50.0%
!!! GTTTTGGAGGCCATGTCTTC+GGG - Chr7:59285705-59285724 MsG0780039179.01.T01:intron 50.0%
CAACAGATGGCACCAGAGTC+AGG + Chr7:59284304-59284323 None:intergenic 55.0%
CAAGCGGCTAGAGTAACAGC+AGG - Chr7:59284341-59284360 MsG0780039179.01.T01:intron 55.0%
CACAGGTATCCCCGAAGACA+TGG + Chr7:59285718-59285737 None:intergenic 55.0%
CATGTCTTCGGGGATACCTG+TGG - Chr7:59285716-59285735 MsG0780039179.01.T01:intron 55.0%
CGCTTGAAGATCCCTCCCAA+TGG + Chr7:59284327-59284346 None:intergenic 55.0%
GCCATCTGTTGCCATTGGGA+GGG - Chr7:59284313-59284332 MsG0780039179.01.T01:intron 55.0%
GGACTGAGTGCCAAAGAGAG+GGG + Chr7:59283503-59283522 None:intergenic 55.0%
GTTGGCTGGTGAAACCGATG+TGG - Chr7:59284165-59284184 MsG0780039179.01.T01:intron 55.0%
TCATCGGAGATGGACCGTAC+AGG - Chr7:59284902-59284921 MsG0780039179.01.T01:intron 55.0%
TCCCTCCCAATGGCAACAGA+TGG + Chr7:59284317-59284336 None:intergenic 55.0%
TGCCATCTGTTGCCATTGGG+AGG - Chr7:59284312-59284331 MsG0780039179.01.T01:intron 55.0%
!! CTGGTGCCATCTGTTGCCAT+TGG - Chr7:59284308-59284327 MsG0780039179.01.T01:intron 55.0%
CAGAGCAGCTGACCTGACTC+TGG - Chr7:59284289-59284308 MsG0780039179.01.T01:intron 60.0%
GGCTGGTGAAACCGATGTGG+TGG - Chr7:59284168-59284187 MsG0780039179.01.T01:intron 60.0%
GTCTTCGGGGATACCTGTGG+TGG - Chr7:59285719-59285738 MsG0780039179.01.T01:intron 60.0%
TTGGAAGGCAGCCACGCGAA+AGG - Chr7:59285920-59285939 MsG0780039179.01.T01:intron 60.0%
CCTGTGGTGGCAGCACGCGC+CGG - Chr7:59285732-59285751 MsG0780039179.01.T01:intron 75.0%
! CCGGCGCGTGCTGCCACCAC+AGG + Chr7:59285735-59285754 None:intergenic 80.0%
! GTGGTGGCAGCACGCGCCGG+AGG - Chr7:59285735-59285754 MsG0780039179.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 59283454 59286288 59283454 ID=MsG0780039179.01;Name=MsG0780039179.01
Chr7 mRNA 59283454 59286288 59283454 ID=MsG0780039179.01.T01;Parent=MsG0780039179.01;Name=MsG0780039179.01.T01;_AED=0.46;_eAED=0.51;_QI=0|0.33|0.75|1|0.66|0.75|4|179|254
Chr7 exon 59283454 59284173 59283454 ID=MsG0780039179.01.T01:exon:6949;Parent=MsG0780039179.01.T01
Chr7 exon 59284819 59284875 59284819 ID=MsG0780039179.01.T01:exon:6948;Parent=MsG0780039179.01.T01
Chr7 exon 59285965 59286038 59285965 ID=MsG0780039179.01.T01:exon:6947;Parent=MsG0780039179.01.T01
Chr7 exon 59286196 59286288 59286196 ID=MsG0780039179.01.T01:exon:6946;Parent=MsG0780039179.01.T01
Chr7 CDS 59286196 59286288 59286196 ID=MsG0780039179.01.T01:cds;Parent=MsG0780039179.01.T01
Chr7 CDS 59285965 59286038 59285965 ID=MsG0780039179.01.T01:cds;Parent=MsG0780039179.01.T01
Chr7 CDS 59284819 59284875 59284819 ID=MsG0780039179.01.T01:cds;Parent=MsG0780039179.01.T01
Chr7 CDS 59283633 59284173 59283633 ID=MsG0780039179.01.T01:cds;Parent=MsG0780039179.01.T01
Chr7 three_prime_UTR 59283454 59283632 59283454 ID=MsG0780039179.01.T01:three_prime_utr;Parent=MsG0780039179.01.T01
Gene Sequence

>MsG0780039179.01.T01

ATGCAAATTGGAAATTCAGCTTTCCCTCCCTTGGTATCAGAACGTACCCCTCTCTTTGGCACTCAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTTTTGGTGCTCTTATCATTGCAAAACTATTGTCTGTTCCAATTGTCATGTCCTATCATACCCATGTACCAGTGGTCATGGATAAGCTTCCTGAAGCTCGAGTTGCTTTCATCGGAGATGGACCGTACAGGGAGGAGCTAGAGAAAATGTTTGAAGGTATGCCTGCAGTATTCACAGGAATGTTAGGAGGGGAAGTACTCTCTCAAGCATATGCTAGTGGAGATGTATTTATCATGCCTTCAGAGTCAGAAACACTTGGCTTCGTTGTTTTGGAGGCCATGTCTTCGGGGATACCTGTGGTGGCAGCACGCGCCGGAGGCATTCCAGATATAATTCCCGCGGATCAAGAAGGTAAAACCGGCTATCTCTATAATCCAGGTGATCTTGAAGACTGCTTGAGTAAATTGAAACCCCTTTTGTTCGACAAAGAGTTGAGAGAAACCATAGGAAAAGCTGCACGTAATGAAATGGAAAAATTTGATTGGAAGGCAGCCACGCGAAAGGTTCGAAATGAACAATACAATGCTGCTATTTGGTTCTGGCGCAAGAAAAGAGCGATATTATTGAGGCCCTTACAATGGATCAGTAAACGTGTTTTCCATCACCACAAGTTAACTATAGATGATGTAAGTAAACGTTCCAAGCTTAGGATTGTTCCTTGCCTGGCTTGA

Protein sequence

>MsG0780039179.01.T01

MQIGNSAFPPLVSERTPLFGTQSKNNFRGSSVFGALIIAKLLSVPIVMSYHTHVPVVMDKLPEARVAFIGDGPYREELEKMFEGMPAVFTGMLGGEVLSQAYASGDVFIMPSESETLGFVVLEAMSSGIPVVAARAGGIPDIIPADQEGKTGYLYNPGDLEDCLSKLKPLLFDKELRETIGKAARNEMEKFDWKAATRKVRNEQYNAAIWFWRKKRAILLRPLQWISKRVFHHHKLTIDDVSKRSKLRIVPCLA*