AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0872660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872660 MtrunA17_Chr6g0453741 96.540 289 10 0 1 289 110 398 0.0 592
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872660 AT3G29185.1 71.918 292 79 2 1 289 105 396 2.70e-154 436
Msa0872660 AT3G29185.2 72.028 286 77 2 7 289 49 334 6.45e-152 428

Find 79 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCAAACACTTCAGTTTC+TGG 0.125528 6_1:-8235343 Msa0872660:CDS
AGCAAGAGCCTTTCACATTT+TGG 0.171401 6_1:-8234456 Msa0872660:CDS
TTACACCATTTCTTGGTAAA+TGG 0.177570 6_1:-8234132 Msa0872660:CDS
CCTCCTCTACTTGACAGTTC+TGG 0.221649 6_1:-8234374 Msa0872660:CDS
CTCCTCTACTTGACAGTTCT+GGG 0.281241 6_1:-8234373 Msa0872660:CDS
ACAAACCGAAGTGGTGTCTA+TGG 0.282463 6_1:-8234094 Msa0872660:CDS
GACAATTTAGTCACATTTGA+TGG 0.303591 6_1:-8233107 Msa0872660:CDS
AATAGGATTACACCATTTCT+TGG 0.307951 6_1:-8234139 Msa0872660:CDS
TGACAATGGCCAACTTATTC+AGG 0.316730 6_1:-8234026 Msa0872660:intron
GTATTACGGCAAGGGGTTCT+TGG 0.322878 6_1:-8235055 Msa0872660:CDS
CCTCAATGCAAATGCTTTCT+CGG 0.336795 6_1:+8235105 None:intergenic
AGCATATCAACAGTGCCTTT+TGG 0.374978 6_1:+8234431 None:intergenic
ACAATCAAAATCTTTCCATT+TGG 0.388592 6_1:-8233012 Msa0872660:CDS
ACCAGTCTTTGCCTCTTGTC+AGG 0.390941 6_1:+8232969 None:intergenic
CACGTATGATGTTGAAGGCT+TGG 0.401811 6_1:-8232943 Msa0872660:CDS
CCTTTCCATTTACCAAGAAA+TGG 0.403825 6_1:+8234127 None:intergenic
AAGAACTATTTGAACAATTG+AGG 0.408488 6_1:+8232880 None:intergenic
ATGTTACAACCAATGTTCAT+TGG 0.412156 6_1:-8233145 Msa0872660:CDS
TAAATTCAAAAGTATAGATA+TGG 0.413670 6_1:-8232626 Msa0872660:three_prime_UTR
AGAACTATTTGAACAATTGA+GGG 0.432318 6_1:+8232881 None:intergenic
CTTGTCAACAGTAAACATAT+TGG 0.435663 6_1:+8235276 None:intergenic
CTAACCAACAGAACTCCAAA+TGG 0.465800 6_1:+8232997 None:intergenic
AACTAATCATATTCAATCAA+TGG 0.466512 6_1:+8232807 None:intergenic
CATGTCAGGACACAGAGAAT+AGG 0.472570 6_1:-8234156 Msa0872660:intron
CCGAGAAAGCATTTGCATTG+AGG 0.482157 6_1:-8235105 Msa0872660:CDS
ATTACCTGGTGGCATGTACA+TGG 0.483394 6_1:-8233066 Msa0872660:CDS
CTTTCCATTTGGAGTTCTGT+TGG 0.486980 6_1:-8233001 Msa0872660:CDS
AATGCAAATGCTTTCTCGGA+TGG 0.491967 6_1:+8235109 None:intergenic
TTATTACAACTGATTGAGAC+AGG 0.499361 6_1:+8232696 None:intergenic
ACAACCAATGTTCATTGGAC+TGG 0.500252 6_1:-8233140 Msa0872660:CDS
GTTCGCACGTATGATGTTGA+AGG 0.502288 6_1:-8232948 Msa0872660:CDS
ATGCAAATGCTTTCTCGGAT+GGG 0.503693 6_1:+8235110 None:intergenic
GTATGTTGGAAACTGTATTA+CGG 0.505191 6_1:-8235069 Msa0872660:CDS
GATGTTACTTGTACATCTGA+TGG 0.511525 6_1:-8233173 Msa0872660:CDS
TGTAAAATACCTGAATAAGT+TGG 0.513142 6_1:+8234017 None:intergenic
GCATTGAGGTATCAAACAGC+TGG 0.518125 6_1:-8235091 Msa0872660:CDS
AGATGACGATGATGCGGAAT+GGG 0.527733 6_1:-8235320 Msa0872660:CDS
ACCTGACAAGAGGCAAAGAC+TGG 0.527879 6_1:-8232970 Msa0872660:CDS
TATCTCTATGTAAAGAGTAC+AGG 0.531861 6_1:+8234483 None:intergenic
ATGTTACTTGTACATCTGAT+GGG 0.537891 6_1:-8233172 Msa0872660:CDS
GAAACTGAAGTGTTTGATGA+AGG 0.538761 6_1:+8235346 None:intergenic
GTATCAAACAGCTGGTATGT+TGG 0.539394 6_1:-8235083 Msa0872660:CDS
AACAAGAGAAGGTCGGCGAG+AGG 0.550515 6_1:+8234517 None:intergenic
TTCCTAGAGGAACGAAGTGA+GGG 0.551395 6_1:-8234401 Msa0872660:CDS
TGGAAACTGTATTACGGCAA+GGG 0.557233 6_1:-8235063 Msa0872660:CDS
ACAAGAGAAGGTCGGCGAGA+GGG 0.557468 6_1:+8234518 None:intergenic
CTCATGTAACACAACTGTAT+CGG 0.558819 6_1:+8234054 None:intergenic
CCATTTCTTGGTAAATGGAA+AGG 0.561343 6_1:-8234127 Msa0872660:CDS
CAAACCGAAGTGGTGTCTAT+GGG 0.561656 6_1:-8234093 Msa0872660:CDS
CTTCCTAGAGGAACGAAGTG+AGG 0.575142 6_1:-8234402 Msa0872660:CDS
TTGGAAACTGTATTACGGCA+AGG 0.578280 6_1:-8235064 Msa0872660:CDS
TATCAGATGATTCTATTACC+TGG 0.580776 6_1:-8233080 Msa0872660:CDS
CATCCCATGTACATGCCACC+AGG 0.581224 6_1:+8233062 None:intergenic
GACACCACTTCGGTTTGTAA+CGG 0.583815 6_1:+8234099 None:intergenic
GAGATGACGATGATGCGGAA+TGG 0.595696 6_1:-8235321 Msa0872660:CDS
GGAAACTGTATTACGGCAAG+GGG 0.596961 6_1:-8235062 Msa0872660:CDS
CAATTCTCACAAACAAGAGA+AGG 0.603260 6_1:+8234506 None:intergenic
AATGGATGAAAATTATGCAA+AGG 0.605211 6_1:+8232825 None:intergenic
ACCCCTCACTTCGTTCCTCT+AGG 0.605321 6_1:+8234399 None:intergenic
CCAGAACTGTCAAGTAGAGG+AGG 0.606177 6_1:+8234374 None:intergenic
AATAAAATAAGTAGATGAGA+CGG 0.608181 6_1:+8232920 None:intergenic
TTCTGGAGATGACGATGATG+CGG 0.615230 6_1:-8235326 Msa0872660:CDS
GTTCTTGGAGAAGATGACAT+TGG 0.622939 6_1:-8235040 Msa0872660:CDS
AATTTAGTCACATTTGATGG+AGG 0.624019 6_1:-8233104 Msa0872660:CDS
AAAGGTAAATGAGTATTACA+TGG 0.634242 6_1:+8232843 None:intergenic
GGTTAGAGACACCTGACAAG+AGG 0.634907 6_1:-8232980 Msa0872660:CDS
TCCTCTACTTGACAGTTCTG+GGG 0.636778 6_1:-8234372 Msa0872660:intron
ACCCCAGAACTGTCAAGTAG+AGG 0.643774 6_1:+8234371 None:intergenic
TATGCTTATCATCTTCCTAG+AGG 0.644237 6_1:-8234414 Msa0872660:CDS
TCTCACAAACAAGAGAAGGT+CGG 0.653517 6_1:+8234510 None:intergenic
ACATTGGTGAAGAATCGCCT+AGG 0.655898 6_1:-8235024 Msa0872660:intron
TGTTACTTGTACATCTGATG+GGG 0.667390 6_1:-8233171 Msa0872660:CDS
TTACCTGGTGGCATGTACAT+GGG 0.668069 6_1:-8233065 Msa0872660:CDS
CAGATGATTCTATTACCTGG+TGG 0.669336 6_1:-8233077 Msa0872660:CDS
TCCTAGAGGAACGAAGTGAG+GGG 0.678973 6_1:-8234400 Msa0872660:CDS
TAGACCCATAGACACCACTT+CGG 0.688155 6_1:+8234089 None:intergenic
CGTTCCGTTACAAACCGAAG+TGG 0.693369 6_1:-8234103 Msa0872660:CDS
TGTGCCAGTCCAATGAACAT+TGG 0.708705 6_1:+8233136 None:intergenic
TTACATGAGATGAATGACAA+TGG 0.736609 6_1:-8234040 Msa0872660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAATAAATAACTAAATA+TGG + chr6_1:8235181-8235200 None:intergenic 10.0%
!! ATTTAGTTATTTATTTATGA+AGG - chr6_1:8235182-8235201 Msa0872660:intron 10.0%
!!! TAAAATTTTAGTGAAATGTA+AGG - chr6_1:8232904-8232923 Msa0872660:exon 15.0%
!!! TCAAATCATTTTTCAAATAA+TGG + chr6_1:8233010-8233029 None:intergenic 15.0%
!!! ACAATTGATTTATAAAGAAA+AGG + chr6_1:8233478-8233497 None:intergenic 15.0%
!!! ATTTAACTTTTTAAGCAATT+TGG + chr6_1:8233941-8233960 None:intergenic 15.0%
!! AAATTGCTTAAAAAGTTAAA+TGG - chr6_1:8233940-8233959 Msa0872660:intron 15.0%
!! AAATCAACAAAAAAAGAATA+TGG + chr6_1:8234232-8234251 None:intergenic 15.0%
!! TTCAAATGTATATGATTTAT+AGG + chr6_1:8235799-8235818 None:intergenic 15.0%
!! GTTAATACAGTTTAAATATA+TGG + chr6_1:8235975-8235994 None:intergenic 15.0%
!!! TAAATTCAAAAGTATAGATA+TGG - chr6_1:8236808-8236827 Msa0872660:five_prime_UTR 15.0%
!!! TGTTAGTTTAACTAAAACTT+AGG - chr6_1:8233116-8233135 Msa0872660:CDS 20.0%
!!! GTTAGTTTAACTAAAACTTA+GGG - chr6_1:8233117-8233136 Msa0872660:CDS 20.0%
!! AATTACAATTAAAGATTGTG+AGG + chr6_1:8233345-8233364 None:intergenic 20.0%
!!! TAATGATCTGAAACTAAAAT+AGG + chr6_1:8233409-8233428 None:intergenic 20.0%
!!! TATTTTAGTTTCAGATCATT+AGG - chr6_1:8233408-8233427 Msa0872660:intron 20.0%
!! AAATCAATTGTTGAAAAAGA+AGG - chr6_1:8233487-8233506 Msa0872660:intron 20.0%
!!! TTAAACCACATGTTTTAAAA+TGG + chr6_1:8233750-8233769 None:intergenic 20.0%
!!! TTCTTTTTTTGTTGATTTCT+TGG - chr6_1:8234234-8234253 Msa0872660:intron 20.0%
!!! ATGCTAATTTAACTCTTTTT+GGG + chr6_1:8234449-8234468 None:intergenic 20.0%
!! TATGCATATTAAATGTTTGT+AGG + chr6_1:8234518-8234537 None:intergenic 20.0%
!!! TGTTTTTTATCAGAACATTT+TGG - chr6_1:8234607-8234626 Msa0872660:intron 20.0%
!!! ACACATTATATTTTATACCT+TGG - chr6_1:8234851-8234870 Msa0872660:intron 20.0%
!!! CTTATTTTCACAATTTCTTA+TGG - chr6_1:8234875-8234894 Msa0872660:intron 20.0%
!!! ATTCATTTTTAATTCATGTC+AGG - chr6_1:8235264-8235283 Msa0872660:intron 20.0%
!! AAACTAAAACAGTTAAACAA+AGG + chr6_1:8235552-8235571 None:intergenic 20.0%
!!! TTGTTTAACTGTTTTAGTTT+CGG - chr6_1:8235552-8235571 Msa0872660:intron 20.0%
!!! TATTTGTTGAACATACTATA+CGG + chr6_1:8235638-8235657 None:intergenic 20.0%
!! AAGTTTATAACAGAAAATTG+TGG + chr6_1:8235771-8235790 None:intergenic 20.0%
!!! AATGTAATTAACCACATTTT+TGG + chr6_1:8235887-8235906 None:intergenic 20.0%
!! AAAATGTGGTTAATTACATT+CGG - chr6_1:8235887-8235906 Msa0872660:intron 20.0%
!!! AGCATTATATATCTTCATTT+TGG - chr6_1:8236029-8236048 Msa0872660:intron 20.0%
!! AATAAAATAAGTAGATGAGA+CGG + chr6_1:8236517-8236536 None:intergenic 20.0%
!! AACTAATCATATTCAATCAA+TGG + chr6_1:8236630-8236649 None:intergenic 20.0%
!! AATCAGTTGTAATAAAAAGA+TGG - chr6_1:8236746-8236765 Msa0872660:intron 20.0%
! TTTGCTTAAACAAACAAACA+AGG - chr6_1:8232725-8232744 Msa0872660:three_prime_UTR 25.0%
! TTGCTTAAACAAACAAACAA+GGG - chr6_1:8232726-8232745 Msa0872660:three_prime_UTR 25.0%
!! TTACACAAGATGATGTTTTT+AGG + chr6_1:8232793-8232812 None:intergenic 25.0%
! ATCATCTTGTGTAAAAAACA+TGG - chr6_1:8232799-8232818 Msa0872660:three_prime_UTR 25.0%
! TAATAACAAAATAGCAAACC+AGG - chr6_1:8233565-8233584 Msa0872660:intron 25.0%
! TAATAGCTATCTTGGATATA+AGG + chr6_1:8233613-8233632 None:intergenic 25.0%
! TCCAAGATAGCTATTATTAA+TGG - chr6_1:8233617-8233636 Msa0872660:intron 25.0%
! ACCATTAATAATAGCTATCT+TGG + chr6_1:8233621-8233640 None:intergenic 25.0%
!! AAAAGTTCTAATCTCATGAA+TGG + chr6_1:8233698-8233717 None:intergenic 25.0%
!! ATGAGATTAGAACTTTTAGA+TGG - chr6_1:8233701-8233720 Msa0872660:intron 25.0%
! TATCTGCAAACTAATTGTAA+TGG + chr6_1:8234296-8234315 None:intergenic 25.0%
!!! ATTACAATTAGTTTGCAGAT+AGG - chr6_1:8234295-8234314 Msa0872660:intron 25.0%
!! GATGCTAATTTAACTCTTTT+TGG + chr6_1:8234450-8234469 None:intergenic 25.0%
! CAAACATTTAATATGCATAG+CGG - chr6_1:8234519-8234538 Msa0872660:CDS 25.0%
! AAACATTTAATATGCATAGC+GGG - chr6_1:8234520-8234539 Msa0872660:CDS 25.0%
! AAATTGTGAAAATAAGTCCA+AGG + chr6_1:8234871-8234890 None:intergenic 25.0%
! TGTAAAATACCTGAATAAGT+TGG + chr6_1:8235420-8235439 None:intergenic 25.0%
! ACTGCATTAAAAACATAACA+AGG + chr6_1:8235582-8235601 None:intergenic 25.0%
! TAGTATGTTCAACAAATACA+TGG - chr6_1:8235640-8235659 Msa0872660:intron 25.0%
! CATATACATTTGAACACATT+TGG - chr6_1:8235805-8235824 Msa0872660:intron 25.0%
!!! TAATTAACCACATTTTTGGA+TGG + chr6_1:8235883-8235902 None:intergenic 25.0%
! ATATGGCTAATTATGTTCAA+TGG + chr6_1:8235958-8235977 None:intergenic 25.0%
!!! ATATATCTTCATTTTGGAGT+TGG - chr6_1:8236035-8236054 Msa0872660:intron 25.0%
! ACACAATATATGAAGCTAAA+GGG + chr6_1:8236180-8236199 None:intergenic 25.0%
! TACACAATATATGAAGCTAA+AGG + chr6_1:8236181-8236200 None:intergenic 25.0%
! ACAATCAAAATCTTTCCATT+TGG - chr6_1:8236422-8236441 Msa0872660:intron 25.0%
! AGAACTATTTGAACAATTGA+GGG + chr6_1:8236556-8236575 None:intergenic 25.0%
! AAGAACTATTTGAACAATTG+AGG + chr6_1:8236557-8236576 None:intergenic 25.0%
! AAAGGTAAATGAGTATTACA+TGG + chr6_1:8236594-8236613 None:intergenic 25.0%
! AATGGATGAAAATTATGCAA+AGG + chr6_1:8236612-8236631 None:intergenic 25.0%
!! CTTTTCATGTGATATAGTTT+AGG - chr6_1:8236665-8236684 Msa0872660:intron 25.0%
TAAACAAACAAACAAGGGTA+AGG - chr6_1:8232731-8232750 Msa0872660:three_prime_UTR 30.0%
CTTGTGTAAAAAACATGGTA+AGG - chr6_1:8232804-8232823 Msa0872660:three_prime_UTR 30.0%
TAGAGTACACTAAAAATGGT+GGG - chr6_1:8232832-8232851 Msa0872660:three_prime_UTR 30.0%
! TTTTAAGCAAACACAGATGA+GGG + chr6_1:8232889-8232908 None:intergenic 30.0%
! ATTTTAAGCAAACACAGATG+AGG + chr6_1:8232890-8232909 None:intergenic 30.0%
! CACTAATCTAGCAGATTTTA+AGG - chr6_1:8232953-8232972 Msa0872660:CDS 30.0%
TCACTTTGATATATCGTCTA+CGG - chr6_1:8232980-8232999 Msa0872660:CDS 30.0%
AGATTGTGAGGCAAATTTAA+TGG + chr6_1:8233333-8233352 None:intergenic 30.0%
CTATCTTGGATATAAGGAAT+TGG + chr6_1:8233607-8233626 None:intergenic 30.0%
TAATGGTGTGATCTATTGTA+AGG - chr6_1:8233634-8233653 Msa0872660:intron 30.0%
! ACTTTTAGATGGAGATTAGA+CGG - chr6_1:8233712-8233731 Msa0872660:intron 30.0%
!!! TTCTGCCATTTTAAAACATG+TGG - chr6_1:8233742-8233761 Msa0872660:intron 30.0%
AATTAACACAATCAAGAGCT+TGG + chr6_1:8233804-8233823 None:intergenic 30.0%
TATGCTTTGTAAGTGTTTCA+AGG - chr6_1:8233965-8233984 Msa0872660:intron 30.0%
TAAGATAAGATGCCACAAAT+TGG + chr6_1:8233991-8234010 None:intergenic 30.0%
CTTGTCAACAGTAAACATAT+TGG + chr6_1:8234161-8234180 None:intergenic 30.0%
! TGGATATTTGAAAGAAGCAT+TGG + chr6_1:8234276-8234295 None:intergenic 30.0%
GTATGTTGGAAACTGTATTA+CGG - chr6_1:8234365-8234384 Msa0872660:intron 30.0%
! TATCTCTATGTAAAGAGTAC+AGG + chr6_1:8234954-8234973 None:intergenic 30.0%
AATAGGATTACACCATTTCT+TGG - chr6_1:8235295-8235314 Msa0872660:CDS 30.0%
TTACACCATTTCTTGGTAAA+TGG - chr6_1:8235302-8235321 Msa0872660:CDS 30.0%
TTACATGAGATGAATGACAA+TGG - chr6_1:8235394-8235413 Msa0872660:intron 30.0%
GTTAATGACGTTCAAAATTG+GGG + chr6_1:8235749-8235768 None:intergenic 30.0%
GGTTAATGACGTTCAAAATT+GGG + chr6_1:8235750-8235769 None:intergenic 30.0%
TGGTTAATGACGTTCAAAAT+TGG + chr6_1:8235751-8235770 None:intergenic 30.0%
ATACATTTGAACACATTTGG+AGG - chr6_1:8235808-8235827 Msa0872660:intron 30.0%
TACATTTGAACACATTTGGA+GGG - chr6_1:8235809-8235828 Msa0872660:intron 30.0%
TTCAAACTCCTGAAAAATTG+TGG - chr6_1:8235851-8235870 Msa0872660:intron 30.0%
ATTAACCATCAAAATTGCTG+TGG - chr6_1:8235989-8236008 Msa0872660:intron 30.0%
! AATTTCCACAGCAATTTTGA+TGG + chr6_1:8235997-8236016 None:intergenic 30.0%
TATACCAACTGAACACAAAA+GGG + chr6_1:8236093-8236112 None:intergenic 30.0%
ATATACCAACTGAACACAAA+AGG + chr6_1:8236094-8236113 None:intergenic 30.0%
! ATGTTACTTGTACATCTGAT+GGG - chr6_1:8236262-8236281 Msa0872660:intron 30.0%
ATGTTACAACCAATGTTCAT+TGG - chr6_1:8236289-8236308 Msa0872660:intron 30.0%
GACAATTTAGTCACATTTGA+TGG - chr6_1:8236327-8236346 Msa0872660:intron 30.0%
AATTTAGTCACATTTGATGG+AGG - chr6_1:8236330-8236349 Msa0872660:intron 30.0%
TATCAGATGATTCTATTACC+TGG - chr6_1:8236354-8236373 Msa0872660:intron 30.0%
TTATTACAACTGATTGAGAC+AGG + chr6_1:8236741-8236760 None:intergenic 30.0%
! AGCTTTCTGTTAGCTCTTAT+GGG - chr6_1:8232625-8232644 Msa0872660:three_prime_UTR 35.0%
TGCGTAGAGTACACTAAAAA+TGG - chr6_1:8232828-8232847 Msa0872660:three_prime_UTR 35.0%
GTAGAGTACACTAAAAATGG+TGG - chr6_1:8232831-8232850 Msa0872660:three_prime_UTR 35.0%
TTTGATATATCGTCTACGGT+GGG - chr6_1:8232984-8233003 Msa0872660:CDS 35.0%
AGTTGTTCTAATGAGTGAGA+TGG - chr6_1:8233081-8233100 Msa0872660:CDS 35.0%
GACAGTGACTTGATTGATAT+GGG + chr6_1:8233195-8233214 None:intergenic 35.0%
AGACAGTGACTTGATTGATA+TGG + chr6_1:8233196-8233215 None:intergenic 35.0%
AAACACATGCTAAGAGAAAG+TGG - chr6_1:8233433-8233452 Msa0872660:intron 35.0%
GGATTCTTATTCAAGCAGAA+CGG - chr6_1:8233845-8233864 Msa0872660:intron 35.0%
!! GCATCTTATCTTACTTTTCG+TGG - chr6_1:8233998-8234017 Msa0872660:intron 35.0%
! GAAACTGAAGTGTTTGATGA+AGG + chr6_1:8234091-8234110 None:intergenic 35.0%
TCATCAAACACTTCAGTTTC+TGG - chr6_1:8234091-8234110 Msa0872660:CDS 35.0%
CAGAATAAAGTCTCACTTGT+TGG + chr6_1:8234186-8234205 None:intergenic 35.0%
AGAGTTAAATTAGCATCGTC+TGG - chr6_1:8234453-8234472 Msa0872660:CDS 35.0%
! CGTCTGGTTGATTTCTATAT+AGG - chr6_1:8234469-8234488 Msa0872660:CDS 35.0%
AGTTGTTAACATCAGACATG+TGG + chr6_1:8234633-8234652 None:intergenic 35.0%
! GTCATCTAAAATGAAGAGCT+TGG + chr6_1:8234674-8234693 None:intergenic 35.0%
! AACCTCTTCATTTTAGACTC+AGG - chr6_1:8234769-8234788 Msa0872660:intron 35.0%
! ACCTCTTCATTTTAGACTCA+GGG - chr6_1:8234770-8234789 Msa0872660:intron 35.0%
TGAACTACCCTGTAAAGAAA+AGG - chr6_1:8234823-8234842 Msa0872660:intron 35.0%
CAATTCTCACAAACAAGAGA+AGG + chr6_1:8234931-8234950 None:intergenic 35.0%
!!! TTTTGGCTCCAAAATGTGAA+AGG + chr6_1:8234989-8235008 None:intergenic 35.0%
!!! TTTCACATTTTGGAGCCAAA+AGG - chr6_1:8234988-8235007 Msa0872660:intron 35.0%
TATGCTTATCATCTTCCTAG+AGG - chr6_1:8235020-8235039 Msa0872660:intron 35.0%
CCTTTCCATTTACCAAGAAA+TGG + chr6_1:8235310-8235329 None:intergenic 35.0%
CCATTTCTTGGTAAATGGAA+AGG - chr6_1:8235307-8235326 Msa0872660:CDS 35.0%
CTCATGTAACACAACTGTAT+CGG + chr6_1:8235383-8235402 None:intergenic 35.0%
GGTTAATTGTGTTCAGTTGA+TGG + chr6_1:8235728-8235747 None:intergenic 35.0%
! GGCATTAACCACAATTTTTC+AGG + chr6_1:8235862-8235881 None:intergenic 35.0%
GTTAATGCCATCCAAAAATG+TGG - chr6_1:8235873-8235892 Msa0872660:intron 35.0%
ATGTGGTTAATTACATTCGG+TGG - chr6_1:8235890-8235909 Msa0872660:intron 35.0%
TATATGAAGCTAAAGGGAGA+GGG + chr6_1:8236174-8236193 None:intergenic 35.0%
ATATATGAAGCTAAAGGGAG+AGG + chr6_1:8236175-8236194 None:intergenic 35.0%
!! TTTGTTGTTGATTCTGCTAC+TGG - chr6_1:8236231-8236250 Msa0872660:intron 35.0%
! GATGTTACTTGTACATCTGA+TGG - chr6_1:8236261-8236280 Msa0872660:intron 35.0%
! TGTTACTTGTACATCTGATG+GGG - chr6_1:8236263-8236282 Msa0872660:intron 35.0%
!! ACACTTTTTGCTACATCACA+AGG + chr6_1:8236399-8236418 None:intergenic 35.0%
TTGTGATGTAGCAAAAAGTG+TGG - chr6_1:8236398-8236417 Msa0872660:intron 35.0%
! GCTTTCTGTTAGCTCTTATG+GGG - chr6_1:8232626-8232645 Msa0872660:three_prime_UTR 40.0%
CTTTGATATATCGTCTACGG+TGG - chr6_1:8232983-8233002 Msa0872660:CDS 40.0%
! GGGACAACATTGGTTATCAT+TGG + chr6_1:8233037-8233056 None:intergenic 40.0%
TGATAACCAATGTTGTCCCT+TGG - chr6_1:8233038-8233057 Msa0872660:CDS 40.0%
CTGTGACTTTCTACTTCCAA+GGG + chr6_1:8233057-8233076 None:intergenic 40.0%
ACTGTGACTTTCTACTTCCA+AGG + chr6_1:8233058-8233077 None:intergenic 40.0%
AGGGTAATGAGTGTAAGTTG+AGG - chr6_1:8233136-8233155 Msa0872660:CDS 40.0%
ATCAAGAGCTTGGAACCTTT+GGG + chr6_1:8233794-8233813 None:intergenic 40.0%
AATCAAGAGCTTGGAACCTT+TGG + chr6_1:8233795-8233814 None:intergenic 40.0%
AGTGTTTCAAGGCCAATTTG+TGG - chr6_1:8233976-8233995 Msa0872660:intron 40.0%
TGTTTAATGTACAGCCTGCA+GGG + chr6_1:8234067-8234086 None:intergenic 40.0%
TTGTTTAATGTACAGCCTGC+AGG + chr6_1:8234068-8234087 None:intergenic 40.0%
GTGAGACTTTATTCTGTTGC+TGG - chr6_1:8234190-8234209 Msa0872660:intron 40.0%
ATGCAAATGCTTTCTCGGAT+GGG + chr6_1:8234327-8234346 None:intergenic 40.0%
AATGCAAATGCTTTCTCGGA+TGG + chr6_1:8234328-8234347 None:intergenic 40.0%
CCTCAATGCAAATGCTTTCT+CGG + chr6_1:8234332-8234351 None:intergenic 40.0%
GTATCAAACAGCTGGTATGT+TGG - chr6_1:8234351-8234370 Msa0872660:intron 40.0%
TTGGAAACTGTATTACGGCA+AGG - chr6_1:8234370-8234389 Msa0872660:intron 40.0%
TGGAAACTGTATTACGGCAA+GGG - chr6_1:8234371-8234390 Msa0872660:intron 40.0%
GTTCTTGGAGAAGATGACAT+TGG - chr6_1:8234394-8234413 Msa0872660:CDS 40.0%
TGGGAACAAATCACTTACCT+AGG + chr6_1:8234430-8234449 None:intergenic 40.0%
! CATTTAATATGCATAGCGGG+TGG - chr6_1:8234523-8234542 Msa0872660:CDS 40.0%
TCTGACATGTAAGACTCGTT+TGG - chr6_1:8234726-8234745 Msa0872660:intron 40.0%
! ACTCGTTTGGTGGACATAAT+AGG - chr6_1:8234739-8234758 Msa0872660:intron 40.0%
! CCTCTTCATTTTAGACTCAG+GGG - chr6_1:8234771-8234790 Msa0872660:intron 40.0%
TCTCACAAACAAGAGAAGGT+CGG + chr6_1:8234927-8234946 None:intergenic 40.0%
! AGCAAGAGCCTTTCACATTT+TGG - chr6_1:8234978-8234997 Msa0872660:intron 40.0%
! AGCATATCAACAGTGCCTTT+TGG + chr6_1:8235006-8235025 None:intergenic 40.0%
GTGTGTGTGTGTGTGAAAAT+CGG + chr6_1:8235138-8235157 None:intergenic 40.0%
! TTTTCACACACACACACACA+CGG - chr6_1:8235139-8235158 Msa0872660:intron 40.0%
TGACAATGGCCAACTTATTC+AGG - chr6_1:8235408-8235427 Msa0872660:intron 40.0%
TAGTACTAGACCAACTATCG+AGG + chr6_1:8235609-8235628 None:intergenic 40.0%
TGATTCTGCTACTGGAAATC+AGG - chr6_1:8236239-8236258 Msa0872660:intron 40.0%
ACAACCAATGTTCATTGGAC+TGG - chr6_1:8236294-8236313 Msa0872660:intron 40.0%
CAGATGATTCTATTACCTGG+TGG - chr6_1:8236357-8236376 Msa0872660:intron 40.0%
! CTTTCCATTTGGAGTTCTGT+TGG - chr6_1:8236433-8236452 Msa0872660:intron 40.0%
CTAACCAACAGAACTCCAAA+TGG + chr6_1:8236440-8236459 None:intergenic 40.0%
GATGTTGTCACGTGACTGAA+CGG - chr6_1:8232753-8232772 Msa0872660:three_prime_UTR 45.0%
CTACTTCCAAGGGACAACAT+TGG + chr6_1:8233047-8233066 None:intergenic 45.0%
AAGTCACTGTCTCACTCACA+AGG - chr6_1:8233204-8233223 Msa0872660:intron 45.0%
CTTTGACAGGTGGTTCGATA+TGG + chr6_1:8233303-8233322 None:intergenic 45.0%
TATCGAACCACCTGTCAAAG+TGG - chr6_1:8233303-8233322 Msa0872660:intron 45.0%
TAATGGTGCACCACTTTGAC+AGG + chr6_1:8233316-8233335 None:intergenic 45.0%
GGCAAAATTTCAGATGCACC+TGG + chr6_1:8233586-8233605 None:intergenic 45.0%
GTAAGGATTCAGACTACCTG+TGG - chr6_1:8233651-8233670 Msa0872660:intron 45.0%
GTTGTCTAATGTCCACCCAA+AGG - chr6_1:8233776-8233795 Msa0872660:intron 45.0%
! TTCTGGAGATGACGATGATG+CGG - chr6_1:8234108-8234127 Msa0872660:CDS 45.0%
AGATGACGATGATGCGGAAT+GGG - chr6_1:8234114-8234133 Msa0872660:CDS 45.0%
!! CCGAGAAAGCATTTGCATTG+AGG - chr6_1:8234329-8234348 Msa0872660:intron 45.0%
! GCATTGAGGTATCAAACAGC+TGG - chr6_1:8234343-8234362 Msa0872660:intron 45.0%
GGAAACTGTATTACGGCAAG+GGG - chr6_1:8234372-8234391 Msa0872660:intron 45.0%
ACATTGGTGAAGAATCGCCT+AGG - chr6_1:8234410-8234429 Msa0872660:CDS 45.0%
AGCAAGTTCTGTCTACGTGA+TGG + chr6_1:8234585-8234604 None:intergenic 45.0%
GACATGTAAGACTCGTTTGG+TGG - chr6_1:8234729-8234748 Msa0872660:intron 45.0%
! CCCCTGAGTCTAAAATGAAG+AGG + chr6_1:8234774-8234793 None:intergenic 45.0%
! GTGTGCGCCTTTTCTTTACA+GGG + chr6_1:8234833-8234852 None:intergenic 45.0%
! TGTGTGCGCCTTTTCTTTAC+AGG + chr6_1:8234834-8234853 None:intergenic 45.0%
TTCCTAGAGGAACGAAGTGA+GGG - chr6_1:8235033-8235052 Msa0872660:CDS 45.0%
CTCCTCTACTTGACAGTTCT+GGG - chr6_1:8235061-8235080 Msa0872660:CDS 45.0%
TCCTCTACTTGACAGTTCTG+GGG - chr6_1:8235062-8235081 Msa0872660:CDS 45.0%
TTTCACACACACACACACAC+GGG - chr6_1:8235140-8235159 Msa0872660:intron 45.0%
CATGTCAGGACACAGAGAAT+AGG - chr6_1:8235278-8235297 Msa0872660:CDS 45.0%
! GACACCACTTCGGTTTGTAA+CGG + chr6_1:8235338-8235357 None:intergenic 45.0%
ACAAACCGAAGTGGTGTCTA+TGG - chr6_1:8235340-8235359 Msa0872660:CDS 45.0%
CAAACCGAAGTGGTGTCTAT+GGG - chr6_1:8235341-8235360 Msa0872660:CDS 45.0%
TAGACCCATAGACACCACTT+CGG + chr6_1:8235348-8235367 None:intergenic 45.0%
ACGCAGCAGCAAGAGTTATT+AGG + chr6_1:8235444-8235463 None:intergenic 45.0%
AATAACTCTTGCTGCTGCGT+AGG - chr6_1:8235444-8235463 Msa0872660:intron 45.0%
! TGCAGTTTTGCCTCGATAGT+TGG - chr6_1:8235596-8235615 Msa0872660:intron 45.0%
ACATGGCTAATGACTTTCGC+TGG - chr6_1:8235657-8235676 Msa0872660:intron 45.0%
! TCCACCCTTTTGTGTTCAGT+TGG - chr6_1:8236086-8236105 Msa0872660:intron 45.0%
ACCAACTGAACACAAAAGGG+TGG + chr6_1:8236090-8236109 None:intergenic 45.0%
TGTGCCAGTCCAATGAACAT+TGG + chr6_1:8236301-8236320 None:intergenic 45.0%
ATTACCTGGTGGCATGTACA+TGG - chr6_1:8236368-8236387 Msa0872660:intron 45.0%
TTACCTGGTGGCATGTACAT+GGG - chr6_1:8236369-8236388 Msa0872660:intron 45.0%
GTTCGCACGTATGATGTTGA+AGG - chr6_1:8236486-8236505 Msa0872660:intron 45.0%
CACGTATGATGTTGAAGGCT+TGG - chr6_1:8236491-8236510 Msa0872660:intron 45.0%
! CTGCAAGAGCTTTAGTGCAC+CGG - chr6_1:8232859-8232878 Msa0872660:three_prime_UTR 50.0%
! TGCAAGAGCTTTAGTGCACC+GGG - chr6_1:8232860-8232879 Msa0872660:three_prime_UTR 50.0%
TCTACTTCCAGCCAGTACCA+CGG - chr6_1:8233246-8233265 Msa0872660:intron 50.0%
GGATTCAGACTACCTGTGGT+CGG - chr6_1:8233655-8233674 Msa0872660:intron 50.0%
GATTCAGACTACCTGTGGTC+GGG - chr6_1:8233656-8233675 Msa0872660:intron 50.0%
! GTGAATGTTTTCCCGACCAC+AGG + chr6_1:8233670-8233689 None:intergenic 50.0%
AAGAGCTTGGAACCTTTGGG+TGG + chr6_1:8233791-8233810 None:intergenic 50.0%
GTACAGATGTTGTTCCCTGC+AGG - chr6_1:8234050-8234069 Msa0872660:CDS 50.0%
GAGATGACGATGATGCGGAA+TGG - chr6_1:8234113-8234132 Msa0872660:CDS 50.0%
GTATTACGGCAAGGGGTTCT+TGG - chr6_1:8234379-8234398 Msa0872660:CDS 50.0%
CTTCCTAGAGGAACGAAGTG+AGG - chr6_1:8235032-8235051 Msa0872660:CDS 50.0%
TCCTAGAGGAACGAAGTGAG+GGG - chr6_1:8235034-8235053 Msa0872660:CDS 50.0%
CCAGAACTGTCAAGTAGAGG+AGG + chr6_1:8235063-8235082 None:intergenic 50.0%
CCTCCTCTACTTGACAGTTC+TGG - chr6_1:8235060-8235079 Msa0872660:CDS 50.0%
ACCCCAGAACTGTCAAGTAG+AGG + chr6_1:8235066-8235085 None:intergenic 50.0%
CGTTCCGTTACAAACCGAAG+TGG - chr6_1:8235331-8235350 Msa0872660:CDS 50.0%
TTGCTGCTGCGTAGGTATAC+TGG - chr6_1:8235452-8235471 Msa0872660:intron 50.0%
TGGGTGGAGAGAAGATTGTG+TGG + chr6_1:8236061-8236080 None:intergenic 50.0%
CACAAAAGGGTGGAGCGAAT+GGG + chr6_1:8236080-8236099 None:intergenic 50.0%
ACACAAAAGGGTGGAGCGAA+TGG + chr6_1:8236081-8236100 None:intergenic 50.0%
GGTTAGAGACACCTGACAAG+AGG - chr6_1:8236454-8236473 Msa0872660:intron 50.0%
ACCTGACAAGAGGCAAAGAC+TGG - chr6_1:8236464-8236483 Msa0872660:intron 50.0%
ACCAGTCTTTGCCTCTTGTC+AGG + chr6_1:8236468-8236487 None:intergenic 50.0%
GTCACGTGACTGAACGGTCA+CGG - chr6_1:8232759-8232778 Msa0872660:three_prime_UTR 55.0%
TCACGTGACTGAACGGTCAC+GGG - chr6_1:8232760-8232779 Msa0872660:three_prime_UTR 55.0%
CGGTGCACTAAAGCTCTTGC+AGG + chr6_1:8232861-8232880 None:intergenic 55.0%
AAACACAGATGAGGGCAGCC+CGG + chr6_1:8232881-8232900 None:intergenic 55.0%
TCTCACTCACAAGGACGACG+AGG - chr6_1:8233213-8233232 Msa0872660:intron 55.0%
CTCACTCACAAGGACGACGA+GGG - chr6_1:8233214-8233233 Msa0872660:intron 55.0%
CTACTTCCAGCCAGTACCAC+GGG - chr6_1:8233247-8233266 Msa0872660:intron 55.0%
CTGAAACTCAATGACGCCCG+TGG + chr6_1:8233266-8233285 None:intergenic 55.0%
TGGTGCACCACTTTGACAGG+TGG + chr6_1:8233313-8233332 None:intergenic 55.0%
GTGTGCTTTCGAGACTGCAG+AGG - chr6_1:8233824-8233843 Msa0872660:intron 55.0%
ACAAGAGAAGGTCGGCGAGA+GGG + chr6_1:8234919-8234938 None:intergenic 55.0%
AACAAGAGAAGGTCGGCGAG+AGG + chr6_1:8234920-8234939 None:intergenic 55.0%
ACCCCTCACTTCGTTCCTCT+AGG + chr6_1:8235038-8235057 None:intergenic 55.0%
AAAAGGGTGGAGCGAATGGG+TGG + chr6_1:8236077-8236096 None:intergenic 55.0%
CATCCCATGTACATGCCACC+AGG + chr6_1:8236375-8236394 None:intergenic 55.0%
CTCAATGACGCCCGTGGTAC+TGG + chr6_1:8233260-8233279 None:intergenic 60.0%
!! ATGACGCCCGTGGTACTGGC+TGG + chr6_1:8233256-8233275 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 8232625 8236831 8232625 ID=Msa0872660;Name=Msa0872660
chr6_1 mRNA 8232625 8236831 8232625 ID=Msa0872660-mRNA-1;Parent=Msa0872660;Name=Msa0872660-mRNA-1;_AED=0.36;_eAED=0.36;_QI=35|1|1|1|0.8|0.83|6|280|289
chr6_1 exon 8232625 8233195 8232625 ID=Msa0872660-mRNA-1:exon:2506;Parent=Msa0872660-mRNA-1
chr6_1 exon 8234027 8234170 8234027 ID=Msa0872660-mRNA-1:exon:2505;Parent=Msa0872660-mRNA-1
chr6_1 exon 8234373 8234553 8234373 ID=Msa0872660-mRNA-1:exon:2504;Parent=Msa0872660-mRNA-1
chr6_1 exon 8235025 8235143 8235025 ID=Msa0872660-mRNA-1:exon:2503;Parent=Msa0872660-mRNA-1
chr6_1 exon 8235267 8235384 8235267 ID=Msa0872660-mRNA-1:exon:2502;Parent=Msa0872660-mRNA-1
chr6_1 exon 8236780 8236831 8236780 ID=Msa0872660-mRNA-1:exon:2501;Parent=Msa0872660-mRNA-1
chr6_1 five_prime_UTR 8236797 8236831 8236797 ID=Msa0872660-mRNA-1:five_prime_utr;Parent=Msa0872660-mRNA-1
chr6_1 CDS 8236780 8236796 8236780 ID=Msa0872660-mRNA-1:cds;Parent=Msa0872660-mRNA-1
chr6_1 CDS 8235267 8235384 8235267 ID=Msa0872660-mRNA-1:cds;Parent=Msa0872660-mRNA-1
chr6_1 CDS 8235025 8235143 8235025 ID=Msa0872660-mRNA-1:cds;Parent=Msa0872660-mRNA-1
chr6_1 CDS 8234373 8234553 8234373 ID=Msa0872660-mRNA-1:cds;Parent=Msa0872660-mRNA-1
chr6_1 CDS 8234027 8234170 8234027 ID=Msa0872660-mRNA-1:cds;Parent=Msa0872660-mRNA-1
chr6_1 CDS 8232905 8233195 8232905 ID=Msa0872660-mRNA-1:cds;Parent=Msa0872660-mRNA-1
chr6_1 three_prime_UTR 8232625 8232904 8232625 ID=Msa0872660-mRNA-1:three_prime_utr;Parent=Msa0872660-mRNA-1
Gene Sequence

>Msa0872660

ATGAGTCTCATTCAATCGCTGTACATTAAACAACCTTCATCAAACACTTCAGTTTCTGGAGATGACGATGATGCGGAATGGGCAGAGTACAAAATTAAAGAAACCAATATGTTTACTGTTGACAAGTACCAACAAATAGGCTTTTTCCCATCCGAGAAAGCATTTGCATTGAGGTATCAAACAGCTGGTATGTTGGAAACTGTATTACGGCAAGGGGTTCTTGGAGAAGATGACATTGGTGAAGAATCGCCTAGAAATCTCAAACTTCCCTCTCGCCGACCTTCTCTTGTTTGTGAGAATTGCCTGTACTCTTTACATAGAGATATGCGAGCAAGAGCCTTTCACATTTTGGAGCCAAAAGGCACTGTTGATATGCTTATCATCTTCCTAGAGGAACGAAGTGAGGGGTCTCCTCCTCTACTTGACAGTTCTGGGGACACAGAGAATAGGATTACACCATTTCTTGGTAAATGGAAAGGTCGTTCCGTTACAAACCGAAGTGGTGTCTATGGGTCTACGATTTCTGAAGCCGATACAGTTGTGTTACATGAGATGAATGACAATGGCCAACTTATTCAGGATGTTACTTGTACATCTGATGGGGCAAATGTTACAACCAATGTTCATTGGACTGGCACAGTATCAGACAATTTAGTCACATTTGATGGAGGTTATCAGATGATTCTATTACCTGGTGGCATGTACATGGGATGTCCTTGTGATGTAGCAAAAAGTGTGGCACAATCAAAATCTTTCCATTTGGAGTTCTGTTGGTTAGAGACACCTGACAAGAGGCAAAGACTGGTTCGCACGTATGATGTTGAAGGCTTGGCCGTCTCATCTACTTATTTTATTGAGACAAAGTTGTGA

Protein sequence

>Msa0872660

MSLIQSLYIKQPSSNTSVSGDDDDAEWAEYKIKETNMFTVDKYQQIGFFPSEKAFALRYQTAGMLETVLRQGVLGEDDIGEESPRNLKLPSRRPSLVCENCLYSLHRDMRARAFHILEPKGTVDMLIIFLEERSEGSPPLLDSSGDTENRITPFLGKWKGRSVTNRSGVYGSTISEADTVVLHEMNDNGQLIQDVTCTSDGANVTTNVHWTGTVSDNLVTFDGGYQMILLPGGMYMGCPCDVAKSVAQSKSFHLEFCWLETPDKRQRLVRTYDVEGLAVSSTYFIETKL*