Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018210 | sp|P43297|RD21A_ARATH | 72.174 | 460 | 118 | 4 | 8 | 464 | 8 | 460 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018210 | Q2HTQ3 | 97.655 | 469 | 11 | 0 | 1 | 469 | 6 | 474 | 0.0 | 959 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000590 | Msa0018210 | 0.825646 | 4.185065e-54 | -8.615850e-47 |
| Msa0018210 | Msa0052030 | 0.831135 | 1.982191e-55 | -8.615850e-47 |
| Msa0018210 | Msa0061150 | 0.834671 | 2.618680e-56 | -8.615850e-47 |
| Msa0018210 | Msa0105700 | 0.816239 | 6.126311e-52 | -8.615850e-47 |
| Msa0018210 | Msa0118540 | 0.806469 | 8.101644e-50 | -8.615850e-47 |
| Msa0018210 | Msa0152170 | 0.809319 | 2.006264e-50 | -8.615850e-47 |
| Msa0018210 | Msa0307470 | 0.850295 | 1.861939e-60 | -8.615850e-47 |
| Msa0018210 | Msa0347610 | 0.840690 | 7.469834e-58 | -8.615850e-47 |
| Msa0018210 | Msa0380040 | 0.822788 | 1.963826e-53 | -8.615850e-47 |
| Msa0018210 | Msa0388840 | 0.828123 | 1.070724e-54 | -8.615850e-47 |
| Msa0018210 | Msa0389810 | 0.816790 | 4.612095e-52 | -8.615850e-47 |
| Msa0018210 | Msa0394340 | 0.818855 | 1.576558e-52 | -8.615850e-47 |
| Msa0018210 | Msa0468130 | 0.825237 | 5.230088e-54 | -8.615850e-47 |
| Msa0018210 | Msa0477260 | 0.805007 | 1.643117e-49 | -8.615850e-47 |
| Msa0018210 | Msa0489610 | 0.858644 | 7.153097e-63 | -8.615850e-47 |
| Msa0018210 | Msa0570330 | 0.800978 | 1.118524e-48 | -8.615850e-47 |
| Msa0018210 | Msa0577120 | 0.858594 | 7.401553e-63 | -8.615850e-47 |
| Msa0018210 | Msa0608710 | 0.801904 | 7.225628e-49 | -8.615850e-47 |
| Msa0018210 | Msa0617450 | 0.831875 | 1.302505e-55 | -8.615850e-47 |
| Msa0018210 | Msa0700230 | 0.821627 | 3.651601e-53 | -8.615850e-47 |
| Msa0018210 | Msa0704730 | 0.847993 | 8.132025e-60 | -8.615850e-47 |
| Msa0018210 | Msa0941540 | 0.806818 | 6.838718e-50 | -8.615850e-47 |
| Msa0018210 | Msa0944550 | 0.806789 | 6.934869e-50 | -8.615850e-47 |
| Msa0018210 | Msa0982270 | 0.813037 | 3.134670e-51 | -8.615850e-47 |
| Msa0018210 | Msa1031810 | 0.805689 | 1.182450e-49 | -8.615850e-47 |
| Msa0018210 | Msa1070850 | 0.804584 | 2.013762e-49 | -8.615850e-47 |
| Msa0018210 | Msa1129210 | 0.832400 | 9.658473e-56 | -8.615850e-47 |
| Msa0018210 | Msa1158670 | 0.814912 | 1.209848e-51 | -8.615850e-47 |
| Msa0018210 | Msa1174310 | 0.814672 | 1.367334e-51 | -8.615850e-47 |
| Msa0018210 | Msa1212170 | 0.827127 | 1.857312e-54 | -8.615850e-47 |
| Msa0018210 | Msa1212250 | 0.815832 | 7.552546e-52 | -8.615850e-47 |
| Msa0018210 | Msa1276510 | 0.848334 | 6.550189e-60 | -8.615850e-47 |
| Msa0018210 | Msa1307740 | 0.823215 | 1.561617e-53 | -8.615850e-47 |
| Msa0018210 | Msa1314770 | 0.812454 | 4.204958e-51 | -8.615850e-47 |
| Msa0018210 | Msa1395440 | 0.831527 | 1.586684e-55 | -8.615850e-47 |
| Msa0018210 | Msa1434240 | 0.828718 | 7.694930e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018210 | MtrunA17_Chr1g0153011 | 93.603 | 469 | 11 | 1 | 1 | 469 | 6 | 455 | 0.0 | 908 |
| Msa0018210 | MtrunA17_Chr3g0134231 | 72.258 | 465 | 126 | 2 | 7 | 469 | 11 | 474 | 0.0 | 689 |
| Msa0018210 | MtrunA17_Chr1g0208261 | 67.972 | 434 | 132 | 3 | 22 | 454 | 66 | 493 | 0.0 | 601 |
| Msa0018210 | MtrunA17_Chr4g0053311 | 64.266 | 361 | 115 | 1 | 3 | 363 | 2 | 348 | 1.73e-176 | 498 |
| Msa0018210 | MtrunA17_Chr3g0142071 | 51.276 | 392 | 180 | 6 | 49 | 438 | 49 | 431 | 4.71e-132 | 389 |
| Msa0018210 | MtrunA17_Chr3g0144281 | 52.924 | 342 | 149 | 4 | 16 | 357 | 19 | 348 | 1.31e-127 | 374 |
| Msa0018210 | MtrunA17_Chr3g0116551 | 51.397 | 358 | 162 | 8 | 11 | 365 | 6 | 354 | 9.26e-123 | 362 |
| Msa0018210 | MtrunA17_Chr4g0058081 | 50.138 | 363 | 171 | 7 | 13 | 373 | 6 | 360 | 1.24e-118 | 352 |
| Msa0018210 | MtrunA17_Chr2g0283901 | 44.787 | 422 | 208 | 8 | 42 | 448 | 43 | 454 | 2.33e-117 | 353 |
| Msa0018210 | MtrunA17_Chr4g0040881 | 51.368 | 329 | 137 | 7 | 37 | 355 | 28 | 343 | 6.83e-113 | 336 |
| Msa0018210 | MtrunA17_Chr4g0041061 | 53.035 | 313 | 130 | 7 | 50 | 355 | 41 | 343 | 2.60e-112 | 335 |
| Msa0018210 | MtrunA17_Chr5g0405751 | 48.864 | 352 | 151 | 8 | 16 | 355 | 8 | 342 | 3.01e-111 | 332 |
| Msa0018210 | MtrunA17_Chr4g0041081 | 52.532 | 316 | 127 | 7 | 50 | 355 | 41 | 343 | 7.25e-111 | 331 |
| Msa0018210 | MtrunA17_Chr2g0315491 | 49.271 | 343 | 152 | 7 | 19 | 355 | 13 | 339 | 1.65e-110 | 330 |
| Msa0018210 | MtrunA17_Chr4g0024411 | 50.462 | 325 | 145 | 6 | 38 | 355 | 26 | 341 | 1.86e-110 | 330 |
| Msa0018210 | MtrunA17_Chr4g0041521 | 52.597 | 308 | 135 | 6 | 50 | 355 | 40 | 338 | 1.75e-108 | 325 |
| Msa0018210 | MtrunA17_Chr4g0040851 | 45.634 | 355 | 182 | 6 | 4 | 356 | 14 | 359 | 1.36e-107 | 323 |
| Msa0018210 | MtrunA17_Chr4g0041481 | 51.948 | 308 | 137 | 6 | 50 | 355 | 40 | 338 | 5.14e-107 | 321 |
| Msa0018210 | MtrunA17_Chr4g0060251 | 50.467 | 321 | 140 | 8 | 45 | 355 | 32 | 343 | 1.99e-106 | 320 |
| Msa0018210 | MtrunA17_Chr2g0325121 | 46.023 | 352 | 167 | 7 | 14 | 358 | 3 | 338 | 1.41e-105 | 317 |
| Msa0018210 | MtrunA17_Chr4g0041471 | 48.220 | 309 | 154 | 5 | 50 | 356 | 37 | 341 | 3.73e-100 | 303 |
| Msa0018210 | MtrunA17_Chr2g0319991 | 45.342 | 322 | 172 | 4 | 38 | 356 | 23 | 343 | 4.26e-98 | 298 |
| Msa0018210 | MtrunA17_Chr7g0248391 | 46.326 | 313 | 149 | 10 | 50 | 358 | 42 | 339 | 3.84e-86 | 268 |
| Msa0018210 | MtrunA17_Chr7g0248811 | 43.077 | 325 | 166 | 8 | 37 | 355 | 23 | 334 | 6.06e-85 | 265 |
| Msa0018210 | MtrunA17_Chr8g0379151 | 40.327 | 367 | 185 | 14 | 5 | 357 | 27 | 373 | 2.19e-74 | 238 |
| Msa0018210 | MtrunA17_Chr2g0283741 | 36.785 | 367 | 210 | 12 | 9 | 362 | 8 | 365 | 1.69e-69 | 226 |
| Msa0018210 | MtrunA17_Chr2g0311471 | 40.884 | 362 | 183 | 14 | 7 | 356 | 4 | 346 | 7.66e-67 | 218 |
| Msa0018210 | MtrunA17_Chr2g0283671 | 51.739 | 230 | 106 | 5 | 128 | 356 | 2 | 227 | 1.07e-66 | 213 |
| Msa0018210 | MtrunA17_Chr0c27g0493921 | 37.778 | 360 | 193 | 11 | 11 | 356 | 6 | 348 | 1.25e-66 | 217 |
| Msa0018210 | MtrunA17_Chr4g0070441 | 38.235 | 340 | 184 | 10 | 10 | 335 | 5 | 332 | 5.57e-64 | 211 |
| Msa0018210 | MtrunA17_Chr1g0155781 | 41.946 | 298 | 147 | 8 | 56 | 336 | 57 | 345 | 1.14e-63 | 210 |
| Msa0018210 | MtrunA17_Chr4g0035551 | 38.701 | 354 | 169 | 12 | 13 | 336 | 6 | 341 | 1.40e-62 | 207 |
| Msa0018210 | MtrunA17_Chr2g0311381 | 41.231 | 325 | 165 | 15 | 48 | 355 | 34 | 349 | 2.99e-60 | 201 |
| Msa0018210 | MtrunA17_Chr2g0311391 | 35.233 | 386 | 191 | 15 | 7 | 354 | 4 | 368 | 3.20e-55 | 188 |
| Msa0018210 | MtrunA17_Chr1g0199131 | 33.693 | 371 | 202 | 10 | 4 | 348 | 6 | 358 | 6.17e-54 | 185 |
| Msa0018210 | MtrunA17_Chr1g0156161 | 45.249 | 221 | 111 | 7 | 138 | 354 | 47 | 261 | 3.15e-52 | 177 |
| Msa0018210 | MtrunA17_Chr2g0283751 | 38.542 | 288 | 156 | 10 | 11 | 287 | 10 | 287 | 9.16e-50 | 171 |
| Msa0018210 | MtrunA17_Chr4g0036731 | 35.714 | 294 | 146 | 8 | 50 | 336 | 48 | 305 | 4.92e-46 | 162 |
| Msa0018210 | MtrunA17_Chr4g0036281 | 32.353 | 340 | 181 | 9 | 7 | 336 | 9 | 309 | 2.78e-44 | 158 |
| Msa0018210 | MtrunA17_Chr4g0037291 | 34.459 | 296 | 151 | 7 | 50 | 336 | 89 | 350 | 8.22e-44 | 158 |
| Msa0018210 | MtrunA17_Chr7g0248421 | 48.993 | 149 | 71 | 3 | 164 | 311 | 57 | 201 | 2.11e-39 | 141 |
| Msa0018210 | MtrunA17_Chr2g0311091 | 35.714 | 182 | 107 | 3 | 19 | 190 | 3 | 184 | 6.90e-29 | 112 |
| Msa0018210 | MtrunA17_Chr7g0248371 | 52.000 | 100 | 45 | 3 | 258 | 356 | 34 | 131 | 1.93e-28 | 110 |
| Msa0018210 | MtrunA17_Chr1g0156771 | 51.429 | 105 | 47 | 3 | 138 | 239 | 53 | 156 | 1.25e-27 | 108 |
| Msa0018210 | MtrunA17_Chr2g0283661 | 39.695 | 131 | 75 | 2 | 46 | 175 | 29 | 156 | 3.51e-27 | 110 |
| Msa0018210 | MtrunA17_Chr2g0283661 | 44.954 | 109 | 57 | 3 | 248 | 355 | 164 | 270 | 1.06e-24 | 103 |
| Msa0018210 | MtrunA17_Chr7g0248661 | 53.947 | 76 | 33 | 2 | 282 | 356 | 2 | 76 | 3.16e-21 | 87.4 |
| Msa0018210 | MtrunA17_Chr7g0271041 | 28.114 | 281 | 157 | 13 | 97 | 348 | 66 | 330 | 1.68e-19 | 89.7 |
| Msa0018210 | MtrunA17_Chr7g0271031 | 27.046 | 281 | 160 | 12 | 97 | 348 | 110 | 374 | 6.56e-17 | 82.4 |
| Msa0018210 | MtrunA17_Chr1g0147901 | 28.431 | 102 | 65 | 1 | 5 | 106 | 1 | 94 | 2.62e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018210 | AT1G47128.1 | 72.174 | 460 | 118 | 4 | 8 | 464 | 8 | 460 | 0.0 | 659 |
| Msa0018210 | AT5G43060.1 | 71.429 | 455 | 119 | 5 | 9 | 459 | 9 | 456 | 0.0 | 639 |
| Msa0018210 | AT3G19390.1 | 59.465 | 449 | 161 | 8 | 9 | 454 | 8 | 438 | 0.0 | 529 |
| Msa0018210 | AT4G36880.1 | 61.280 | 328 | 121 | 2 | 41 | 362 | 40 | 367 | 8.15e-149 | 429 |
| Msa0018210 | AT1G09850.1 | 52.311 | 411 | 173 | 6 | 45 | 449 | 27 | 420 | 2.08e-145 | 423 |
| Msa0018210 | AT3G19400.1 | 59.133 | 323 | 122 | 6 | 40 | 358 | 34 | 350 | 7.05e-136 | 396 |
| Msa0018210 | AT4G23520.1 | 55.307 | 358 | 141 | 9 | 5 | 358 | 9 | 351 | 2.07e-135 | 394 |
| Msa0018210 | AT4G11310.1 | 51.524 | 361 | 165 | 6 | 1 | 358 | 1 | 354 | 5.76e-127 | 373 |
| Msa0018210 | AT4G11320.2 | 51.801 | 361 | 164 | 6 | 3 | 358 | 6 | 361 | 8.78e-126 | 370 |
| Msa0018210 | AT4G11320.1 | 51.801 | 361 | 164 | 6 | 3 | 358 | 6 | 361 | 8.78e-126 | 370 |
| Msa0018210 | AT3G48340.1 | 52.113 | 355 | 163 | 5 | 12 | 365 | 4 | 352 | 1.02e-124 | 367 |
| Msa0018210 | AT1G20850.1 | 55.205 | 317 | 138 | 2 | 41 | 357 | 42 | 354 | 2.14e-122 | 361 |
| Msa0018210 | AT4G35350.1 | 50.568 | 352 | 163 | 4 | 7 | 358 | 14 | 354 | 7.07e-121 | 357 |
| Msa0018210 | AT5G50260.1 | 51.524 | 361 | 161 | 7 | 5 | 363 | 1 | 349 | 1.09e-118 | 352 |
| Msa0018210 | AT1G06260.1 | 47.714 | 350 | 164 | 6 | 11 | 357 | 10 | 343 | 4.26e-109 | 327 |
| Msa0018210 | AT3G48350.1 | 47.368 | 361 | 175 | 7 | 5 | 362 | 1 | 349 | 3.45e-107 | 323 |
| Msa0018210 | AT5G45890.1 | 49.511 | 307 | 150 | 4 | 52 | 355 | 40 | 344 | 1.60e-104 | 315 |
| Msa0018210 | AT3G43960.1 | 51.032 | 339 | 151 | 10 | 37 | 368 | 28 | 358 | 9.71e-103 | 311 |
| Msa0018210 | AT3G19400.2 | 58.566 | 251 | 95 | 5 | 40 | 286 | 34 | 279 | 3.24e-100 | 302 |
| Msa0018210 | AT2G34080.1 | 42.033 | 364 | 183 | 8 | 1 | 356 | 1 | 344 | 3.16e-91 | 281 |
| Msa0018210 | AT2G27420.1 | 42.936 | 361 | 183 | 10 | 5 | 356 | 1 | 347 | 6.28e-91 | 280 |
| Msa0018210 | AT3G49340.1 | 46.815 | 314 | 152 | 9 | 50 | 356 | 35 | 340 | 2.71e-90 | 278 |
| Msa0018210 | AT4G35350.2 | 48.239 | 284 | 136 | 4 | 7 | 290 | 14 | 286 | 1.58e-88 | 272 |
| Msa0018210 | AT1G29080.1 | 41.905 | 315 | 175 | 7 | 46 | 356 | 35 | 345 | 9.92e-82 | 257 |
| Msa0018210 | AT1G29090.1 | 39.726 | 365 | 180 | 11 | 9 | 356 | 13 | 354 | 5.90e-80 | 252 |
| Msa0018210 | AT3G48350.2 | 43.403 | 288 | 150 | 5 | 5 | 290 | 1 | 277 | 1.32e-72 | 231 |
| Msa0018210 | AT1G29110.1 | 35.362 | 345 | 199 | 7 | 19 | 356 | 6 | 333 | 1.31e-69 | 225 |
| Msa0018210 | AT5G60360.1 | 40.062 | 322 | 167 | 11 | 43 | 356 | 53 | 356 | 1.73e-65 | 215 |
| Msa0018210 | AT3G45310.1 | 36.267 | 375 | 201 | 12 | 1 | 356 | 1 | 356 | 1.45e-64 | 213 |
| Msa0018210 | AT4G39090.1 | 40.129 | 309 | 158 | 7 | 45 | 334 | 43 | 343 | 2.64e-63 | 209 |
| Msa0018210 | AT5G60360.2 | 39.441 | 322 | 168 | 11 | 43 | 356 | 53 | 355 | 3.82e-63 | 209 |
| Msa0018210 | AT5G60360.3 | 39.748 | 317 | 171 | 11 | 43 | 352 | 53 | 356 | 1.05e-62 | 208 |
| Msa0018210 | AT3G45310.2 | 35.809 | 377 | 199 | 13 | 1 | 356 | 1 | 355 | 4.52e-62 | 206 |
| Msa0018210 | AT2G21430.1 | 35.933 | 359 | 186 | 10 | 1 | 334 | 1 | 340 | 8.20e-62 | 206 |
| Msa0018210 | AT4G16190.1 | 35.574 | 357 | 195 | 11 | 6 | 336 | 3 | 350 | 5.06e-57 | 193 |
| Msa0018210 | AT3G54940.2 | 33.989 | 356 | 194 | 11 | 6 | 336 | 8 | 347 | 3.16e-52 | 181 |
| Msa0018210 | AT3G54940.3 | 32.509 | 283 | 161 | 8 | 6 | 272 | 8 | 276 | 9.63e-40 | 145 |
| Msa0018210 | AT4G01610.1 | 27.148 | 291 | 173 | 12 | 97 | 361 | 66 | 343 | 1.35e-19 | 90.5 |
| Msa0018210 | AT1G02305.1 | 28.058 | 278 | 161 | 12 | 97 | 348 | 69 | 333 | 1.62e-19 | 90.5 |
| Msa0018210 | AT4G01610.2 | 26.460 | 291 | 175 | 12 | 97 | 361 | 66 | 343 | 8.20e-18 | 85.1 |
| Msa0018210 | AT1G02300.1 | 28.095 | 210 | 122 | 8 | 161 | 348 | 148 | 350 | 4.72e-13 | 70.9 |
Find 136 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCGTAGGATGAAGAAAT+TGG | 0.244550 | 1_1:+30388669 | Msa0018210:CDS |
| GGGTTCTCTCCATTCTTAAT+TGG | 0.247281 | 1_1:-30391692 | None:intergenic |
| TATGTTCATCAATGAATTTA+AGG | 0.255434 | 1_1:-30388549 | None:intergenic |
| GGTGGTGATGGTCCAGGGTT+AGG | 0.264790 | 1_1:-30391716 | None:intergenic |
| CAGAAAACGGGAAAGATTAT+TGG | 0.266107 | 1_1:+30391555 | Msa0018210:CDS |
| ACAATAATCAAATAAGTTCT+TGG | 0.267678 | 1_1:-30393182 | None:intergenic |
| TTCCTCCAATCAACAGATTC+AGG | 0.289567 | 1_1:-30388739 | None:intergenic |
| GCCAAGCCTCACTGGGCCTT+TGG | 0.294833 | 1_1:+30392888 | Msa0018210:CDS |
| GAGGAACTCAGGAAGATTAA+AGG | 0.300557 | 1_1:+30392980 | Msa0018210:three_prime_UTR |
| AACTTACATATTCATATAAC+TGG | 0.326706 | 1_1:-30390854 | None:intergenic |
| AGGATGCAATGGTGGACTTA+TGG | 0.331252 | 1_1:+30390475 | Msa0018210:CDS |
| GGAAAATCCTATAACGGTTT+AGG | 0.332670 | 1_1:+30388490 | Msa0018210:CDS |
| TGAATTCGACATATAGATTA+GGG | 0.336748 | 1_1:+30388578 | Msa0018210:CDS |
| GTGGTGATGGTCCAGGGTTA+GGG | 0.341154 | 1_1:-30391715 | None:intergenic |
| ATGGTAGATGTGACCAGAAC+AGG | 0.354867 | 1_1:+30390570 | Msa0018210:CDS |
| GAAATTCATGGGGTGGTAGC+TGG | 0.356281 | 1_1:+30391585 | Msa0018210:CDS |
| AATCAAATAAGTTCTTGGTT+TGG | 0.359336 | 1_1:-30393177 | None:intergenic |
| TTGAATTCGACATATAGATT+AGG | 0.369544 | 1_1:+30388577 | Msa0018210:CDS |
| CAGACAGATGGTGGCTTGAT+AGG | 0.385214 | 1_1:-30391743 | None:intergenic |
| GCACTCCTGCCAAGCCTCAC+TGG | 0.389486 | 1_1:+30392880 | Msa0018210:CDS |
| TGTTCCTGCTTATGATGAAT+TGG | 0.389594 | 1_1:+30390767 | Msa0018210:CDS |
| TCTTGTCAGGGTGTATTTAC+CGG | 0.390275 | 1_1:+30391482 | Msa0018210:intron |
| TGAAGAAATTGGGTGGTTCT+AGG | 0.394114 | 1_1:+30388680 | Msa0018210:CDS |
| GTCTTTGAAAACTAAGGAAA+AGG | 0.396454 | 1_1:-30393024 | None:intergenic |
| CCTATCGCCGTTGCTGTTGA+AGG | 0.401421 | 1_1:+30390816 | Msa0018210:CDS |
| CGTTGGTTAGATCCGCGAAC+CGG | 0.404470 | 1_1:-30388606 | None:intergenic |
| TGCATTGTCTTTGAAAACTA+AGG | 0.404768 | 1_1:-30393030 | None:intergenic |
| ATTGGATTGTGAGAAATTCA+TGG | 0.410060 | 1_1:+30391573 | Msa0018210:CDS |
| GGAGATGATCGACATGTCTA+AGG | 0.412540 | 1_1:-30388380 | None:intergenic |
| CCAAGTAACTAACCCTGTTC+TGG | 0.415431 | 1_1:-30390583 | None:intergenic |
| TACCCTTACAAGGCTATTGA+TGG | 0.421160 | 1_1:+30390551 | Msa0018210:CDS |
| CTACCATCAATAGCCTTGTA+AGG | 0.422671 | 1_1:-30390554 | None:intergenic |
| CCATTCTTAATTGGATAAGA+TGG | 0.425760 | 1_1:-30391683 | None:intergenic |
| AATTGCCTGAATCTGTTGAT+TGG | 0.426885 | 1_1:+30388734 | Msa0018210:CDS |
| AAGGCCCAGTGAGGCTTGGC+AGG | 0.429824 | 1_1:-30392885 | None:intergenic |
| CACTCCTGCCAAGCCTCACT+GGG | 0.436398 | 1_1:+30392881 | Msa0018210:CDS |
| AAATTCATGGGGTGGTAGCT+GGG | 0.438702 | 1_1:+30391586 | Msa0018210:CDS |
| TCAGCAATCGCAGCTGTTGA+AGG | 0.443055 | 1_1:+30390374 | Msa0018210:CDS |
| GGTGATGGTCCAGGGTTAGG+GGG | 0.448618 | 1_1:-30391713 | None:intergenic |
| TGGTGATGGTCCAGGGTTAG+GGG | 0.449337 | 1_1:-30391714 | None:intergenic |
| AAGCCTCACTGGGCCTTTGG+TGG | 0.453398 | 1_1:+30392891 | Msa0018210:CDS |
| GTGATGGTCCAGGGTTAGGG+GGG | 0.453507 | 1_1:-30391712 | None:intergenic |
| TTTCAATGAAGGGAGTTGTT+GGG | 0.459541 | 1_1:+30390346 | Msa0018210:intron |
| AGGAAGGAAGGTGCTGTTGT+TGG | 0.459612 | 1_1:+30388757 | Msa0018210:CDS |
| TCGTGCTGGACTTTGTCTTA+AGG | 0.462543 | 1_1:+30391922 | Msa0018210:CDS |
| GTTGGATACGGTACAGAAAA+CGG | 0.466958 | 1_1:+30391542 | Msa0018210:CDS |
| TTCACTATCAGAACAAGAAC+TGG | 0.467996 | 1_1:+30390427 | Msa0018210:CDS |
| AATTTCTTCATCCTACGGTT+CGG | 0.472057 | 1_1:-30388667 | None:intergenic |
| GGTGAAGGTGGTGATGGTCC+AGG | 0.475487 | 1_1:-30391722 | None:intergenic |
| TGATGAATTGGCCTTGCAAA+AGG | 0.476220 | 1_1:+30390779 | Msa0018210:CDS |
| CTTGCTTCTATACTCTTCGT+TGG | 0.478320 | 1_1:-30388623 | None:intergenic |
| GGAATAAATAAGATTGTGAC+AGG | 0.481755 | 1_1:+30390395 | Msa0018210:CDS |
| CACCCAATTTCTTCATCCTA+CGG | 0.483167 | 1_1:-30388672 | None:intergenic |
| TTGAATGACTTCACTCCCAA+TGG | 0.485328 | 1_1:-30392855 | None:intergenic |
| AGTGCTTACCACAACTTGCT+TGG | 0.487527 | 1_1:-30388789 | None:intergenic |
| GCTTGTTGATTTGTCTGGGT+GGG | 0.490913 | 1_1:-30388413 | None:intergenic |
| CAACAGCAACGGCGATAGGC+TGG | 0.494154 | 1_1:-30390812 | None:intergenic |
| ATTAGGGTTGACCCGGTTCG+CGG | 0.494343 | 1_1:+30388594 | Msa0018210:CDS |
| CCTTCAACAGCAACGGCGAT+AGG | 0.495351 | 1_1:-30390816 | None:intergenic |
| ACCAAAGGCCCAGTGAGGCT+TGG | 0.495376 | 1_1:-30392889 | None:intergenic |
| CGGAAGATCTTGCTTTGAGT+GGG | 0.495651 | 1_1:+30391820 | Msa0018210:CDS |
| TCTTTGAAAACTAAGGAAAA+GGG | 0.496346 | 1_1:-30393023 | None:intergenic |
| AACCGTAGGATGAAGAAATT+GGG | 0.496972 | 1_1:+30388670 | Msa0018210:CDS |
| TTGGATACGGTACAGAAAAC+GGG | 0.498134 | 1_1:+30391543 | Msa0018210:CDS |
| GATAAGATGAGGAGGAACTC+AGG | 0.498885 | 1_1:+30392969 | Msa0018210:three_prime_UTR |
| GATGATCATTCAGTAATGCT+TGG | 0.503062 | 1_1:+30393230 | Msa0018210:three_prime_UTR |
| CCTGTCTGTGACACTCGTGC+TGG | 0.506173 | 1_1:+30391908 | Msa0018210:CDS |
| CCATCTTATCCAATTAAGAA+TGG | 0.509247 | 1_1:+30391683 | Msa0018210:CDS |
| CAGGGCAAGAACAACCCATT+GGG | 0.518625 | 1_1:+30392840 | Msa0018210:intron |
| TGAATGACTTCACTCCCAAT+GGG | 0.526000 | 1_1:-30392854 | None:intergenic |
| TGCTTGTTGATTTGTCTGGG+TGG | 0.529438 | 1_1:-30388414 | None:intergenic |
| AAATTCATTGATGAACATAA+CGG | 0.530458 | 1_1:+30388553 | Msa0018210:CDS |
| TCAAGCAGAGCAGGAAAGTG+TGG | 0.532736 | 1_1:+30391647 | Msa0018210:CDS |
| TGTTGCTGTATTTACGAGTA+CGG | 0.533425 | 1_1:+30391800 | Msa0018210:CDS |
| AAACATGGAAAATCCTATAA+CGG | 0.534401 | 1_1:+30388484 | Msa0018210:CDS |
| AGCTACTACAGCTGTGCTGA+AGG | 0.535391 | 1_1:+30391770 | Msa0018210:CDS |
| TTTGAGTTCATCATCAGTAA+TGG | 0.537702 | 1_1:+30390506 | Msa0018210:CDS |
| AATCTAGCTTCAAGCAGAGC+AGG | 0.546872 | 1_1:+30391638 | Msa0018210:CDS |
| TTGGATTGTGAGAAATTCAT+GGG | 0.548066 | 1_1:+30391574 | Msa0018210:CDS |
| GACCATGGTGTTGCAGCTGT+TGG | 0.548818 | 1_1:+30391524 | Msa0018210:CDS |
| TGCCTGAATCTGTTGATTGG+AGG | 0.549740 | 1_1:+30388737 | Msa0018210:CDS |
| TGCTGTTGAAGGAGGCGGTA+GGG | 0.550318 | 1_1:+30390827 | Msa0018210:CDS |
| CATCTTGTTCTTACCACCAA+AGG | 0.551674 | 1_1:-30392904 | None:intergenic |
| TTGATAGGTGAAGGTGGTGA+TGG | 0.555756 | 1_1:-30391728 | None:intergenic |
| GGTGGTAGCTGGGGCGAACA+AGG | 0.556905 | 1_1:+30391596 | Msa0018210:CDS |
| GCCGTTGCTGTTGAAGGAGG+CGG | 0.557434 | 1_1:+30390822 | Msa0018210:CDS |
| GGTGTTGCAGCTGTTGGATA+CGG | 0.561703 | 1_1:+30391530 | Msa0018210:CDS |
| CATATAGATTAGGGTTGACC+CGG | 0.561757 | 1_1:+30388587 | Msa0018210:CDS |
| ACGGAAGATCTTGCTTTGAG+TGG | 0.566219 | 1_1:+30391819 | Msa0018210:CDS |
| TAGTGCTGTTCCACATCTAC+CGG | 0.566895 | 1_1:-30391501 | None:intergenic |
| CCAGCACGAGTGTCACAGAC+AGG | 0.571924 | 1_1:-30391908 | None:intergenic |
| TGAAGAGGATTACCCTTACA+AGG | 0.572769 | 1_1:+30390541 | Msa0018210:CDS |
| AATCGTTATGCGCCACGTGT+CGG | 0.576425 | 1_1:+30388706 | Msa0018210:CDS |
| AATTCATGGGGTGGTAGCTG+GGG | 0.580864 | 1_1:+30391587 | Msa0018210:CDS |
| GTCAAAGACCAAGCAAGTTG+TGG | 0.584862 | 1_1:+30388781 | Msa0018210:CDS |
| AAGGCCAATTCATCATAAGC+AGG | 0.585009 | 1_1:-30390771 | None:intergenic |
| ACAGGGCAAGAACAACCCAT+TGG | 0.586674 | 1_1:+30392839 | Msa0018210:intron |
| GGTGTATTTACCGGTAGATG+TGG | 0.590389 | 1_1:+30391491 | Msa0018210:CDS |
| GTTGGTTAGATCCGCGAACC+GGG | 0.598424 | 1_1:-30388605 | None:intergenic |
| TACCATCAATAGCCTTGTAA+GGG | 0.599159 | 1_1:-30390553 | None:intergenic |
| GAGTTCATCATCAGTAATGG+TGG | 0.599792 | 1_1:+30390509 | Msa0018210:CDS |
| ACTATCAGAACAAGAACTGG+TGG | 0.602270 | 1_1:+30390430 | Msa0018210:CDS |
| GGCTAGTGAAACTGTGAAGG+TGG | 0.603824 | 1_1:-30388359 | None:intergenic |
| GTGAAGGTGGTGATGGTCCA+GGG | 0.603987 | 1_1:-30391721 | None:intergenic |
| ATCGCCGTTGCTGTTGAAGG+AGG | 0.609464 | 1_1:+30390819 | Msa0018210:CDS |
| TTGCTGTTGAAGGAGGCGGT+AGG | 0.609931 | 1_1:+30390826 | Msa0018210:CDS |
| GAAGAGTGGTTAGTGAAACA+TGG | 0.615801 | 1_1:+30388469 | Msa0018210:CDS |
| CAAAGATCGATCCGAACCGT+AGG | 0.618623 | 1_1:+30388656 | Msa0018210:CDS |
| CAGCAAGTAGCAGACTCAAG+AGG | 0.620435 | 1_1:-30391851 | None:intergenic |
| TAGTAGCTGTCACAGACAGA+TGG | 0.620790 | 1_1:-30391755 | None:intergenic |
| TGGTAGATGTGACCAGAACA+GGG | 0.623188 | 1_1:+30390571 | Msa0018210:CDS |
| TGGTGGCATTGACTCTGAAG+AGG | 0.626193 | 1_1:+30390526 | Msa0018210:CDS |
| TCATACAACGAAGGATGCAA+TGG | 0.627683 | 1_1:+30390464 | Msa0018210:CDS |
| TACAACGAAGGATGCAATGG+TGG | 0.630463 | 1_1:+30390467 | Msa0018210:CDS |
| GGCAATTTATCACCGACACG+TGG | 0.638153 | 1_1:-30388718 | None:intergenic |
| TGTTGACTATGTACGAAGAG+TGG | 0.640568 | 1_1:+30388455 | Msa0018210:CDS |
| TGCTGAAGGATAAGATGAGG+AGG | 0.640588 | 1_1:+30392961 | Msa0018210:three_prime_UTR |
| TAGCTGTCACAGACAGATGG+TGG | 0.645708 | 1_1:-30391752 | None:intergenic |
| ATTACTGATGATGAACTCAA+AGG | 0.646757 | 1_1:-30390504 | None:intergenic |
| GGTGGCTTGATAGGTGAAGG+TGG | 0.647988 | 1_1:-30391734 | None:intergenic |
| ACCGCCTCCTTCAACAGCAA+CGG | 0.651172 | 1_1:-30390823 | None:intergenic |
| TCTGTTGATTGGAGGAAGGA+AGG | 0.651628 | 1_1:+30388745 | Msa0018210:CDS |
| TAAGGCTAGTGAAACTGTGA+AGG | 0.654033 | 1_1:-30388362 | None:intergenic |
| TGAATCTGTTGATTGGAGGA+AGG | 0.656666 | 1_1:+30388741 | Msa0018210:CDS |
| CACAGACAGGATACTCATGA+GGG | 0.662230 | 1_1:-30391895 | None:intergenic |
| TCACAGACAGGATACTCATG+AGG | 0.662392 | 1_1:-30391896 | None:intergenic |
| GGAAGATCTTGCTTTGAGTG+GGG | 0.666618 | 1_1:+30391821 | Msa0018210:CDS |
| ACGTGCTGAAGGATAAGATG+AGG | 0.671065 | 1_1:+30392958 | Msa0018210:three_prime_UTR |
| ATCCAACAGCTGCAACACCA+TGG | 0.676166 | 1_1:-30391526 | None:intergenic |
| CGTAGGATGAAGAAATTGGG+TGG | 0.680087 | 1_1:+30388673 | Msa0018210:CDS |
| GATGGTGGCTTGATAGGTGA+AGG | 0.689206 | 1_1:-30391737 | None:intergenic |
| ATTGTGAGAAATTCATGGGG+TGG | 0.703535 | 1_1:+30391578 | Msa0018210:CDS |
| TGTGATACATCATACAACGA+AGG | 0.706999 | 1_1:+30390455 | Msa0018210:CDS |
| TGTGGAACAGCACTAGACCA+TGG | 0.711951 | 1_1:+30391509 | Msa0018210:CDS |
| TTACCACCAAAGGCCCAGTG+AGG | 0.714697 | 1_1:-30392894 | None:intergenic |
| TGGATTGTGAGAAATTCATG+GGG | 0.737069 | 1_1:+30391575 | Msa0018210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAATTTTAATTCATAAA+AGG | + | chr1_1:30389362-30389381 | Msa0018210:intron | 10.0% |
| !!! | CAAAATTTTAATTCATAAAA+GGG | + | chr1_1:30389363-30389382 | Msa0018210:intron | 10.0% |
| !! | AGTAATACAAAAAAAAAAAA+AGG | - | chr1_1:30389672-30389691 | None:intergenic | 10.0% |
| !!! | CCTTTTTATAAAAAATTTAT+AGG | - | chr1_1:30392490-30392509 | None:intergenic | 10.0% |
| !!! | CCTATAAATTTTTTATAAAA+AGG | + | chr1_1:30392487-30392506 | Msa0018210:intron | 10.0% |
| !!! | TCTTAATTTAATTGTTTTAT+CGG | + | chr1_1:30392752-30392771 | Msa0018210:intron | 10.0% |
| !! | AAAAGAAAAAGAAAAAAGAA+AGG | - | chr1_1:30388851-30388870 | None:intergenic | 15.0% |
| !!! | TTAGATTTTTCTTATTTTCT+TGG | + | chr1_1:30389172-30389191 | Msa0018210:intron | 15.0% |
| !! | TTAAACTAAAAACAATTCTT+TGG | + | chr1_1:30389625-30389644 | Msa0018210:intron | 15.0% |
| !!! | AACAAAAAAGCATTATATTA+TGG | - | chr1_1:30390142-30390161 | None:intergenic | 15.0% |
| !!! | ATAATATTAGCAATTTTTTG+TGG | - | chr1_1:30390318-30390337 | None:intergenic | 15.0% |
| !! | GTCAAAAAAAATAAATTAAC+AGG | - | chr1_1:30391393-30391412 | None:intergenic | 15.0% |
| !!! | CTTAATTTAATTGTTTTATC+GGG | + | chr1_1:30392753-30392772 | Msa0018210:intron | 15.0% |
| !! | TATGTTCATCAATGAATTTA+AGG | - | chr1_1:30388552-30388571 | None:intergenic | 20.0% |
| !! | AAATTCATTGATGAACATAA+CGG | + | chr1_1:30388553-30388572 | Msa0018210:CDS | 20.0% |
| !!! | TAATGATGTACTTTAATTTG+TGG | + | chr1_1:30389101-30389120 | Msa0018210:intron | 20.0% |
| !!! | ATTTTCTTGGATATGTTATT+AGG | + | chr1_1:30389185-30389204 | Msa0018210:intron | 20.0% |
| !!! | TATATTTCGTATGACTTTTA+AGG | - | chr1_1:30389914-30389933 | None:intergenic | 20.0% |
| !! | AACTTACATATTCATATAAC+TGG | - | chr1_1:30390857-30390876 | None:intergenic | 20.0% |
| !! | ATTAATTCTACTATGAAACT+AGG | + | chr1_1:30390882-30390901 | Msa0018210:intron | 20.0% |
| !! | ATGTATTGTTAGATACAATA+TGG | - | chr1_1:30391215-30391234 | None:intergenic | 20.0% |
| !! | TATTGTATCTAACAATACAT+TGG | + | chr1_1:30391215-30391234 | Msa0018210:intron | 20.0% |
| !! | TATAAATTGTTTAGAAGAGA+AGG | - | chr1_1:30391252-30391271 | None:intergenic | 20.0% |
| !!! | TCCATTTTTAAAACATTACT+TGG | + | chr1_1:30392173-30392192 | Msa0018210:intron | 20.0% |
| !!! | TCCAAGTAATGTTTTAAAAA+TGG | - | chr1_1:30392177-30392196 | None:intergenic | 20.0% |
| !! | AAACAAAGTCAAATTCTTAT+GGG | + | chr1_1:30392708-30392727 | Msa0018210:intron | 20.0% |
| !! | ACAATAATCAAATAAGTTCT+TGG | - | chr1_1:30393185-30393204 | None:intergenic | 20.0% |
| ! | AAACATGGAAAATCCTATAA+CGG | + | chr1_1:30388484-30388503 | Msa0018210:CDS | 25.0% |
| ! | TTGAATTCGACATATAGATT+AGG | + | chr1_1:30388577-30388596 | Msa0018210:CDS | 25.0% |
| ! | TGAATTCGACATATAGATTA+GGG | + | chr1_1:30388578-30388597 | Msa0018210:CDS | 25.0% |
| ! | ACAATACACCACAAAATTAT+GGG | - | chr1_1:30389436-30389455 | None:intergenic | 25.0% |
| ! | TACAATACACCACAAAATTA+TGG | - | chr1_1:30389437-30389456 | None:intergenic | 25.0% |
| !!! | TGATTTAAAATTTTGTGCAC+CGG | - | chr1_1:30389503-30389522 | None:intergenic | 25.0% |
| !!! | ATTTTAATGATCTGAGAGTT+AGG | - | chr1_1:30389550-30389569 | None:intergenic | 25.0% |
| ! | GTAAATCAAAATCAATCGTA+TGG | - | chr1_1:30389597-30389616 | None:intergenic | 25.0% |
| !!! | CTTTGTTTTGTAGTCATATA+AGG | + | chr1_1:30389705-30389724 | Msa0018210:intron | 25.0% |
| ! | TTGCATTTGTTTGTTCAATA+TGG | + | chr1_1:30389814-30389833 | Msa0018210:intron | 25.0% |
| ! | TGCATTTGTTTGTTCAATAT+GGG | + | chr1_1:30389815-30389834 | Msa0018210:intron | 25.0% |
| ! | TCTATCAATCAATCATAACA+TGG | + | chr1_1:30389859-30389878 | Msa0018210:intron | 25.0% |
| !! | TTTAAGGTAGACATGATTAA+AGG | - | chr1_1:30389898-30389917 | None:intergenic | 25.0% |
| ! | TTGATATATTGAGTACTCTT+GGG | - | chr1_1:30390089-30390108 | None:intergenic | 25.0% |
| ! | ATTGATATATTGAGTACTCT+TGG | - | chr1_1:30390090-30390109 | None:intergenic | 25.0% |
| ! | GTACTCAATATATCAATCAT+TGG | + | chr1_1:30390093-30390112 | Msa0018210:intron | 25.0% |
| ! | CAATCATTGGTGTAATAATA+TGG | + | chr1_1:30390106-30390125 | Msa0018210:intron | 25.0% |
| ! | AATCAAACTCAGTTAATCAT+GGG | - | chr1_1:30390240-30390259 | None:intergenic | 25.0% |
| ! | TAATCAAACTCAGTTAATCA+TGG | - | chr1_1:30390241-30390260 | None:intergenic | 25.0% |
| ! | TGATTAACTGAGTTTGATTA+AGG | + | chr1_1:30390241-30390260 | Msa0018210:intron | 25.0% |
| !! | TTAAGGAACATGATAGTTTT+TGG | + | chr1_1:30390258-30390277 | Msa0018210:intron | 25.0% |
| !!! | TATCTTCGTTTTTTCAATGA+AGG | + | chr1_1:30390335-30390354 | Msa0018210:intron | 25.0% |
| !!! | ATCTTCGTTTTTTCAATGAA+GGG | + | chr1_1:30390336-30390355 | Msa0018210:intron | 25.0% |
| ! | ATGACAATAGTAAATGTTTG+TGG | + | chr1_1:30390620-30390639 | Msa0018210:intron | 25.0% |
| ! | TAACACTCTAATTCTTTCAT+TGG | + | chr1_1:30390672-30390691 | Msa0018210:intron | 25.0% |
| !!! | TTCATTGGTTTTAAACTGTT+TGG | + | chr1_1:30390687-30390706 | Msa0018210:intron | 25.0% |
| !! | AATTTTATACTGTGTTGCAT+TGG | + | chr1_1:30390905-30390924 | Msa0018210:intron | 25.0% |
| !! | ATTTTATACTGTGTTGCATT+GGG | + | chr1_1:30390906-30390925 | Msa0018210:intron | 25.0% |
| ! | AATATGGAATAAAAATTCCC+TGG | - | chr1_1:30390996-30391015 | None:intergenic | 25.0% |
| !! | AGTATTCTGACTTTCTAAAA+TGG | + | chr1_1:30391040-30391059 | Msa0018210:intron | 25.0% |
| ! | ACAATATGGTTTAGATACAT+TGG | - | chr1_1:30391201-30391220 | None:intergenic | 25.0% |
| ! | TTGAATAAAAATCATCTGTC+TGG | + | chr1_1:30391324-30391343 | Msa0018210:intron | 25.0% |
| !!! | TTTTTGATTGGATTTTCACT+TGG | + | chr1_1:30391981-30392000 | Msa0018210:intron | 25.0% |
| ! | TTATTTAAACTGTTTGATCG+TGG | - | chr1_1:30392097-30392116 | None:intergenic | 25.0% |
| ! | CTTATAATATATCCATAAGC+TGG | + | chr1_1:30392431-30392450 | Msa0018210:intron | 25.0% |
| ! | ACGAATAATAGACATGTTAT+AGG | - | chr1_1:30392607-30392626 | None:intergenic | 25.0% |
| !! | CATAAGAATTTGACTTTGTT+TGG | - | chr1_1:30392709-30392728 | None:intergenic | 25.0% |
| ! | CAAACAAAGTCAAATTCTTA+TGG | + | chr1_1:30392707-30392726 | Msa0018210:intron | 25.0% |
| ! | GTAAACAATCCATACAAATT+TGG | - | chr1_1:30392785-30392804 | None:intergenic | 25.0% |
| ! | TGATCAAGCACATAAAAATT+TGG | - | chr1_1:30392820-30392839 | None:intergenic | 25.0% |
| !! | TCTTTGAAAACTAAGGAAAA+GGG | - | chr1_1:30393026-30393045 | None:intergenic | 25.0% |
| ! | AATCAAATAAGTTCTTGGTT+TGG | - | chr1_1:30393180-30393199 | None:intergenic | 25.0% |
| !!! | TTTTGCTTGTTGATTTGTCT+GGG | - | chr1_1:30388420-30388439 | None:intergenic | 30.0% |
| ! | TTTTTCACCTAAACCGTTAT+AGG | - | chr1_1:30388500-30388519 | None:intergenic | 30.0% |
| GTTTAGGTGAAAAAGACAAA+AGG | + | chr1_1:30388506-30388525 | Msa0018210:CDS | 30.0% | |
| ! | AGAGTATAGAAGCAAGTTTT+TGG | + | chr1_1:30388630-30388649 | Msa0018210:CDS | 30.0% |
| ! | GAGTATAGAAGCAAGTTTTT+GGG | + | chr1_1:30388631-30388650 | Msa0018210:CDS | 30.0% |
| ATCCATGTGTAACAATATCT+GGG | + | chr1_1:30389061-30389080 | Msa0018210:intron | 30.0% | |
| ! | TGGATTTCCTTATTTGCTTT+GGG | + | chr1_1:30389281-30389300 | Msa0018210:intron | 30.0% |
| ATGAAATCCCAAAGCAAATA+AGG | - | chr1_1:30389291-30389310 | None:intergenic | 30.0% | |
| ATACAATACACCAAGAAACT+GGG | - | chr1_1:30389470-30389489 | None:intergenic | 30.0% | |
| !! | GATTTAAAATTTTGTGCACC+GGG | - | chr1_1:30389502-30389521 | None:intergenic | 30.0% |
| GTAGATAATCATGTAACATG+TGG | + | chr1_1:30390028-30390047 | Msa0018210:intron | 30.0% | |
| TACTTCTGCTCAAGAAATAA+AGG | - | chr1_1:30390185-30390204 | None:intergenic | 30.0% | |
| ATCAAACTCAGTTAATCATG+GGG | - | chr1_1:30390239-30390258 | None:intergenic | 30.0% | |
| GGAATAAATAAGATTGTGAC+AGG | + | chr1_1:30390395-30390414 | Msa0018210:CDS | 30.0% | |
| ! | ATTACTGATGATGAACTCAA+AGG | - | chr1_1:30390507-30390526 | None:intergenic | 30.0% |
| ! | TTTGAGTTCATCATCAGTAA+TGG | + | chr1_1:30390506-30390525 | Msa0018210:CDS | 30.0% |
| ATAACGTCATATTCATGTCA+TGG | + | chr1_1:30390929-30390948 | Msa0018210:intron | 30.0% | |
| ATTGCGTGATTATGTGAATA+TGG | - | chr1_1:30391012-30391031 | None:intergenic | 30.0% | |
| TACTAGGGATATCTTTCATT+CGG | - | chr1_1:30391133-30391152 | None:intergenic | 30.0% | |
| TTTGTCTCTATCGAATGTAT+AGG | - | chr1_1:30391287-30391306 | None:intergenic | 30.0% | |
| ATTGGATTGTGAGAAATTCA+TGG | + | chr1_1:30391573-30391592 | Msa0018210:CDS | 30.0% | |
| TTGGATTGTGAGAAATTCAT+GGG | + | chr1_1:30391574-30391593 | Msa0018210:CDS | 30.0% | |
| CCATTCTTAATTGGATAAGA+TGG | - | chr1_1:30391686-30391705 | None:intergenic | 30.0% | |
| CCATCTTATCCAATTAAGAA+TGG | + | chr1_1:30391683-30391702 | Msa0018210:CDS | 30.0% | |
| AGTAAAAGATAAGGTTGACT+TGG | - | chr1_1:30391953-30391972 | None:intergenic | 30.0% | |
| CCAATTTGAGCTGTTTAAAA+CGG | - | chr1_1:30392067-30392086 | None:intergenic | 30.0% | |
| CATTACTTGGAACTAATTGT+TGG | + | chr1_1:30392186-30392205 | Msa0018210:intron | 30.0% | |
| !! | CTAATTGTTGGCTACTATTT+TGG | + | chr1_1:30392198-30392217 | Msa0018210:intron | 30.0% |
| !!! | TGGATTTTTTTCCTGTTGAT+AGG | + | chr1_1:30392218-30392237 | Msa0018210:intron | 30.0% |
| !!! | GGATTTTTTTCCTGTTGATA+GGG | + | chr1_1:30392219-30392238 | Msa0018210:intron | 30.0% |
| TTTATCTACTGAGACTGTTT+GGG | + | chr1_1:30392564-30392583 | Msa0018210:intron | 30.0% | |
| ! | ATTTTTATGTGCTTGATCAC+AGG | + | chr1_1:30392821-30392840 | Msa0018210:intron | 30.0% |
| ! | TTTTTATGTGCTTGATCACA+GGG | + | chr1_1:30392822-30392841 | Msa0018210:intron | 30.0% |
| ! | GTCTTTGAAAACTAAGGAAA+AGG | - | chr1_1:30393027-30393046 | None:intergenic | 30.0% |
| ! | TGCATTGTCTTTGAAAACTA+AGG | - | chr1_1:30393033-30393052 | None:intergenic | 30.0% |
| !! | TTTTTGGAGGAAGATGAAGA+AGG | - | chr1_1:30388299-30388318 | None:intergenic | 35.0% |
| CTTCATCTTCCTCCAAAAAA+TGG | + | chr1_1:30388300-30388319 | Msa0018210:exon | 35.0% | |
| !!! | TCATCGCTGAATCCATTTTT+TGG | - | chr1_1:30388315-30388334 | None:intergenic | 35.0% |
| !!! | CTTTTGCTTGTTGATTTGTC+TGG | - | chr1_1:30388421-30388440 | None:intergenic | 35.0% |
| GGAAAATCCTATAACGGTTT+AGG | + | chr1_1:30388490-30388509 | Msa0018210:CDS | 35.0% | |
| AATTTCTTCATCCTACGGTT+CGG | - | chr1_1:30388670-30388689 | None:intergenic | 35.0% | |
| AACCGTAGGATGAAGAAATT+GGG | + | chr1_1:30388670-30388689 | Msa0018210:CDS | 35.0% | |
| AATTGCCTGAATCTGTTGAT+TGG | + | chr1_1:30388734-30388753 | Msa0018210:CDS | 35.0% | |
| CAGATATTGTTACACATGGA+TGG | - | chr1_1:30389062-30389081 | None:intergenic | 35.0% | |
| CATCCATGTGTAACAATATC+TGG | + | chr1_1:30389060-30389079 | Msa0018210:intron | 35.0% | |
| TTCCCAGATATTGTTACACA+TGG | - | chr1_1:30389066-30389085 | None:intergenic | 35.0% | |
| CTTGATCCTGATAATTCATC+TGG | + | chr1_1:30389261-30389280 | Msa0018210:intron | 35.0% | |
| GGAAATCCAGATGAATTATC+AGG | - | chr1_1:30389270-30389289 | None:intergenic | 35.0% | |
| ! | CTGGATTTCCTTATTTGCTT+TGG | + | chr1_1:30389280-30389299 | Msa0018210:intron | 35.0% |
| CATACAATACACCAAGAAAC+TGG | - | chr1_1:30389471-30389490 | None:intergenic | 35.0% | |
| ! | GTTTCTTGGTGTATTGTATG+TGG | + | chr1_1:30389471-30389490 | Msa0018210:intron | 35.0% |
| TTAATGATCTGAGAGTTAGG+AGG | - | chr1_1:30389547-30389566 | None:intergenic | 35.0% | |
| TTTGGATTTCGTTTGCAGTA+TGG | + | chr1_1:30389643-30389662 | Msa0018210:intron | 35.0% | |
| GTAGTCATATAAGGTCTGTT+TGG | + | chr1_1:30389714-30389733 | Msa0018210:intron | 35.0% | |
| ! | CCAAGAATTCTGGTGATTTT+AGG | - | chr1_1:30389793-30389812 | None:intergenic | 35.0% |
| CCTAAAATCACCAGAATTCT+TGG | + | chr1_1:30389790-30389809 | Msa0018210:intron | 35.0% | |
| CAAATGCAAACCAAGAATTC+TGG | - | chr1_1:30389803-30389822 | None:intergenic | 35.0% | |
| ! | CCTTAAAAGTTTTACGACGA+CGG | + | chr1_1:30389955-30389974 | Msa0018210:intron | 35.0% |
| ! | TTTTCAATGAAGGGAGTTGT+TGG | + | chr1_1:30390345-30390364 | Msa0018210:intron | 35.0% |
| TTTCAATGAAGGGAGTTGTT+GGG | + | chr1_1:30390346-30390365 | Msa0018210:intron | 35.0% | |
| TTCACTATCAGAACAAGAAC+TGG | + | chr1_1:30390427-30390446 | Msa0018210:CDS | 35.0% | |
| TGTGATACATCATACAACGA+AGG | + | chr1_1:30390455-30390474 | Msa0018210:CDS | 35.0% | |
| !! | TACCATCAATAGCCTTGTAA+GGG | - | chr1_1:30390556-30390575 | None:intergenic | 35.0% |
| GTGGAAGATAGTTAATCAGT+AGG | + | chr1_1:30390639-30390658 | Msa0018210:intron | 35.0% | |
| TGTTCCTGCTTATGATGAAT+TGG | + | chr1_1:30390767-30390786 | Msa0018210:CDS | 35.0% | |
| ATAAAAATTCCCTGGAGTCA+GGG | - | chr1_1:30390988-30391007 | None:intergenic | 35.0% | |
| AATAAAAATTCCCTGGAGTC+AGG | - | chr1_1:30390989-30391008 | None:intergenic | 35.0% | |
| GATTCAAAGCATGTTTCAGA+TGG | + | chr1_1:30391062-30391081 | Msa0018210:intron | 35.0% | |
| ATGAAAGATATCCCTAGTAG+TGG | + | chr1_1:30391134-30391153 | Msa0018210:intron | 35.0% | |
| ATGCTATATAGCCACTACTA+GGG | - | chr1_1:30391148-30391167 | None:intergenic | 35.0% | |
| TATCGAATGTATAGGCAATG+AGG | - | chr1_1:30391279-30391298 | None:intergenic | 35.0% | |
| GGCTATTGAAGATAATGTGA+AGG | - | chr1_1:30391372-30391391 | None:intergenic | 35.0% | |
| TTGACTTTGCTTCACAAGAT+TGG | + | chr1_1:30391408-30391427 | Msa0018210:intron | 35.0% | |
| TATTCCATTTGTCTCTTGTC+AGG | + | chr1_1:30391469-30391488 | Msa0018210:intron | 35.0% | |
| ATTCCATTTGTCTCTTGTCA+GGG | + | chr1_1:30391470-30391489 | Msa0018210:intron | 35.0% | |
| CAGAAAACGGGAAAGATTAT+TGG | + | chr1_1:30391555-30391574 | Msa0018210:CDS | 35.0% | |
| TGGATTGTGAGAAATTCATG+GGG | + | chr1_1:30391575-30391594 | Msa0018210:CDS | 35.0% | |
| TGTTGCTGTATTTACGAGTA+CGG | + | chr1_1:30391800-30391819 | Msa0018210:CDS | 35.0% | |
| ATGCACGCAAGTAAAAGATA+AGG | - | chr1_1:30391962-30391981 | None:intergenic | 35.0% | |
| ! | TACTTGCGTGCATTTTTGAT+TGG | + | chr1_1:30391969-30391988 | Msa0018210:intron | 35.0% |
| !! | CAATGCTTTAAAAGCCAAAC+CGG | + | chr1_1:30392007-30392026 | Msa0018210:intron | 35.0% |
| AGTCTTTACGTTTCAATGTC+CGG | - | chr1_1:30392029-30392048 | None:intergenic | 35.0% | |
| AAACGTAAAGACTTCAGTCA+TGG | + | chr1_1:30392036-30392055 | Msa0018210:intron | 35.0% | |
| !! | CCGTTTTAAACAGCTCAAAT+TGG | + | chr1_1:30392064-30392083 | Msa0018210:intron | 35.0% |
| CAATGAACAGACACTATCTA+CGG | - | chr1_1:30392125-30392144 | None:intergenic | 35.0% | |
| AAGTCCAAATGAACGCAAAA+GGG | - | chr1_1:30392251-30392270 | None:intergenic | 35.0% | |
| AAAGTCCAAATGAACGCAAA+AGG | - | chr1_1:30392252-30392271 | None:intergenic | 35.0% | |
| ! | GATAATCTGAAACCAGCTTA+TGG | - | chr1_1:30392446-30392465 | None:intergenic | 35.0% |
| GTTTATCTACTGAGACTGTT+TGG | + | chr1_1:30392563-30392582 | Msa0018210:intron | 35.0% | |
| GATGATCATTCAGTAATGCT+TGG | + | chr1_1:30393230-30393249 | Msa0018210:three_prime_UTR | 35.0% | |
| !!! | TCGCTGAATCCATTTTTTGG+AGG | - | chr1_1:30388312-30388331 | None:intergenic | 40.0% |
| TAAGGCTAGTGAAACTGTGA+AGG | - | chr1_1:30388365-30388384 | None:intergenic | 40.0% | |
| ! | TGTTGACTATGTACGAAGAG+TGG | + | chr1_1:30388455-30388474 | Msa0018210:CDS | 40.0% |
| GAAGAGTGGTTAGTGAAACA+TGG | + | chr1_1:30388469-30388488 | Msa0018210:CDS | 40.0% | |
| CATATAGATTAGGGTTGACC+CGG | + | chr1_1:30388587-30388606 | Msa0018210:CDS | 40.0% | |
| CTTGCTTCTATACTCTTCGT+TGG | - | chr1_1:30388626-30388645 | None:intergenic | 40.0% | |
| GAACCGTAGGATGAAGAAAT+TGG | + | chr1_1:30388669-30388688 | Msa0018210:CDS | 40.0% | |
| CACCCAATTTCTTCATCCTA+CGG | - | chr1_1:30388675-30388694 | None:intergenic | 40.0% | |
| TGAAGAAATTGGGTGGTTCT+AGG | + | chr1_1:30388680-30388699 | Msa0018210:CDS | 40.0% | |
| TTCCTCCAATCAACAGATTC+AGG | - | chr1_1:30388742-30388761 | None:intergenic | 40.0% | |
| ! | TGAATCTGTTGATTGGAGGA+AGG | + | chr1_1:30388741-30388760 | Msa0018210:CDS | 40.0% |
| TAAAACTCCCCGCATAAGTA+GGG | + | chr1_1:30389398-30389417 | Msa0018210:intron | 40.0% | |
| ! | AAAATTTTGTGCACCGGGTA+AGG | - | chr1_1:30389497-30389516 | None:intergenic | 40.0% |
| TGTAAGATATCCATCAGCTG+TGG | - | chr1_1:30389770-30389789 | None:intergenic | 40.0% | |
| ! | CCGTCGTCGTAAAACTTTTA+AGG | - | chr1_1:30389958-30389977 | None:intergenic | 40.0% |
| TCAGTTAATCATGGGGTGAA+GGG | - | chr1_1:30390232-30390251 | None:intergenic | 40.0% | |
| ACTATCAGAACAAGAACTGG+TGG | + | chr1_1:30390430-30390449 | Msa0018210:CDS | 40.0% | |
| TCATACAACGAAGGATGCAA+TGG | + | chr1_1:30390464-30390483 | Msa0018210:CDS | 40.0% | |
| GAGTTCATCATCAGTAATGG+TGG | + | chr1_1:30390509-30390528 | Msa0018210:CDS | 40.0% | |
| TGAAGAGGATTACCCTTACA+AGG | + | chr1_1:30390541-30390560 | Msa0018210:CDS | 40.0% | |
| TACCCTTACAAGGCTATTGA+TGG | + | chr1_1:30390551-30390570 | Msa0018210:CDS | 40.0% | |
| !! | CTACCATCAATAGCCTTGTA+AGG | - | chr1_1:30390557-30390576 | None:intergenic | 40.0% |
| AAGGCCAATTCATCATAAGC+AGG | - | chr1_1:30390774-30390793 | None:intergenic | 40.0% | |
| !! | TGATGAATTGGCCTTGCAAA+AGG | + | chr1_1:30390779-30390798 | Msa0018210:CDS | 40.0% |
| AACCAAATTCTCTGCAGTCA+GGG | - | chr1_1:30390964-30390983 | None:intergenic | 40.0% | |
| AAACCAAATTCTCTGCAGTC+AGG | - | chr1_1:30390965-30390984 | None:intergenic | 40.0% | |
| GCAATCACGCTTTGTGATTT+CGG | - | chr1_1:30391089-30391108 | None:intergenic | 40.0% | |
| CATGCTATATAGCCACTACT+AGG | - | chr1_1:30391149-30391168 | None:intergenic | 40.0% | |
| CTAGTAGTGGCTATATAGCA+TGG | + | chr1_1:30391147-30391166 | Msa0018210:intron | 40.0% | |
| TATAGCATGGCAGCAATGAA+TGG | + | chr1_1:30391160-30391179 | Msa0018210:intron | 40.0% | |
| AAAATCATCTGTCTGGCAAG+TGG | + | chr1_1:30391331-30391350 | Msa0018210:intron | 40.0% | |
| TCTTGTCAGGGTGTATTTAC+CGG | + | chr1_1:30391482-30391501 | Msa0018210:intron | 40.0% | |
| GTTGGATACGGTACAGAAAA+CGG | + | chr1_1:30391542-30391561 | Msa0018210:CDS | 40.0% | |
| TTGGATACGGTACAGAAAAC+GGG | + | chr1_1:30391543-30391562 | Msa0018210:CDS | 40.0% | |
| ATTGTGAGAAATTCATGGGG+TGG | + | chr1_1:30391578-30391597 | Msa0018210:CDS | 40.0% | |
| GGGTTCTCTCCATTCTTAAT+TGG | - | chr1_1:30391695-30391714 | None:intergenic | 40.0% | |
| !!! | CGGTTTGGCTTTTAAAGCAT+TGG | - | chr1_1:30392009-30392028 | None:intergenic | 40.0% |
| TTACGTTTCAATGTCCGGTT+TGG | - | chr1_1:30392024-30392043 | None:intergenic | 40.0% | |
| ! | ATGTCCCTTTTGCGTTCATT+TGG | + | chr1_1:30392244-30392263 | Msa0018210:intron | 40.0% |
| TGAATGACTTCACTCCCAAT+GGG | - | chr1_1:30392857-30392876 | None:intergenic | 40.0% | |
| TTGAATGACTTCACTCCCAA+TGG | - | chr1_1:30392858-30392877 | None:intergenic | 40.0% | |
| CATCTTGTTCTTACCACCAA+AGG | - | chr1_1:30392907-30392926 | None:intergenic | 40.0% | |
| CTCAAAAATGTACGTGCTGA+AGG | + | chr1_1:30392947-30392966 | Msa0018210:three_prime_UTR | 40.0% | |
| GAGGAACTCAGGAAGATTAA+AGG | + | chr1_1:30392980-30392999 | Msa0018210:three_prime_UTR | 40.0% | |
| GGAGATGATCGACATGTCTA+AGG | - | chr1_1:30388383-30388402 | None:intergenic | 45.0% | |
| !! | GCTTGTTGATTTGTCTGGGT+GGG | - | chr1_1:30388416-30388435 | None:intergenic | 45.0% |
| !! | TGCTTGTTGATTTGTCTGGG+TGG | - | chr1_1:30388417-30388436 | None:intergenic | 45.0% |
| CGTAGGATGAAGAAATTGGG+TGG | + | chr1_1:30388673-30388692 | Msa0018210:CDS | 45.0% | |
| ! | TGCCTGAATCTGTTGATTGG+AGG | + | chr1_1:30388737-30388756 | Msa0018210:CDS | 45.0% |
| ! | TCTGTTGATTGGAGGAAGGA+AGG | + | chr1_1:30388745-30388764 | Msa0018210:CDS | 45.0% |
| GTCAAAGACCAAGCAAGTTG+TGG | + | chr1_1:30388781-30388800 | Msa0018210:CDS | 45.0% | |
| ! | AGTGCTTACCACAACTTGCT+TGG | - | chr1_1:30388792-30388811 | None:intergenic | 45.0% |
| CTAAAACTCCCCGCATAAGT+AGG | + | chr1_1:30389397-30389416 | Msa0018210:intron | 45.0% | |
| CAAAATTATGGGACCCTTCC+CGG | - | chr1_1:30389425-30389444 | None:intergenic | 45.0% | |
| ! | GGAAGGGTCCCATAATTTTG+TGG | + | chr1_1:30389425-30389444 | Msa0018210:intron | 45.0% |
| ! | GTATTGTATGTGGCCTTACC+CGG | + | chr1_1:30389481-30389500 | Msa0018210:intron | 45.0% |
| AGTATCATCACCACAGCTGA+TGG | + | chr1_1:30389757-30389776 | Msa0018210:intron | 45.0% | |
| CTCAGTTAATCATGGGGTGA+AGG | - | chr1_1:30390233-30390252 | None:intergenic | 45.0% | |
| TACAACGAAGGATGCAATGG+TGG | + | chr1_1:30390467-30390486 | Msa0018210:CDS | 45.0% | |
| !! | AGGATGCAATGGTGGACTTA+TGG | + | chr1_1:30390475-30390494 | Msa0018210:CDS | 45.0% |
| ATGGTAGATGTGACCAGAAC+AGG | + | chr1_1:30390570-30390589 | Msa0018210:CDS | 45.0% | |
| TGGTAGATGTGACCAGAACA+GGG | + | chr1_1:30390571-30390590 | Msa0018210:CDS | 45.0% | |
| CCAAGTAACTAACCCTGTTC+TGG | - | chr1_1:30390586-30390605 | None:intergenic | 45.0% | |
| !! | CCAGAACAGGGTTAGTTACT+TGG | + | chr1_1:30390583-30390602 | Msa0018210:intron | 45.0% |
| ! | GTTTGCAACAGCCTTTTGCA+AGG | - | chr1_1:30390793-30390812 | None:intergenic | 45.0% |
| TTCCCTGACTGCAGAGAATT+TGG | + | chr1_1:30390959-30390978 | Msa0018210:intron | 45.0% | |
| ! | AATTTGGTTTCCCTGACTCC+AGG | + | chr1_1:30390975-30390994 | Msa0018210:intron | 45.0% |
| ! | ATTTGGTTTCCCTGACTCCA+GGG | + | chr1_1:30390976-30390995 | Msa0018210:intron | 45.0% |
| ACACCCTGACAAGAGACAAA+TGG | - | chr1_1:30391476-30391495 | None:intergenic | 45.0% | |
| GGTGTATTTACCGGTAGATG+TGG | + | chr1_1:30391491-30391510 | Msa0018210:CDS | 45.0% | |
| ! | TAGTGCTGTTCCACATCTAC+CGG | - | chr1_1:30391504-30391523 | None:intergenic | 45.0% |
| AAATTCATGGGGTGGTAGCT+GGG | + | chr1_1:30391586-30391605 | Msa0018210:CDS | 45.0% | |
| ! | AATCTAGCTTCAAGCAGAGC+AGG | + | chr1_1:30391638-30391657 | Msa0018210:CDS | 45.0% |
| TTGATAGGTGAAGGTGGTGA+TGG | - | chr1_1:30391731-30391750 | None:intergenic | 45.0% | |
| TAGTAGCTGTCACAGACAGA+TGG | - | chr1_1:30391758-30391777 | None:intergenic | 45.0% | |
| ! | ACGGAAGATCTTGCTTTGAG+TGG | + | chr1_1:30391819-30391838 | Msa0018210:CDS | 45.0% |
| ! | CGGAAGATCTTGCTTTGAGT+GGG | + | chr1_1:30391820-30391839 | Msa0018210:CDS | 45.0% |
| ! | GGAAGATCTTGCTTTGAGTG+GGG | + | chr1_1:30391821-30391840 | Msa0018210:CDS | 45.0% |
| CACAGACAGGATACTCATGA+GGG | - | chr1_1:30391898-30391917 | None:intergenic | 45.0% | |
| TCACAGACAGGATACTCATG+AGG | - | chr1_1:30391899-30391918 | None:intergenic | 45.0% | |
| TCGTGCTGGACTTTGTCTTA+AGG | + | chr1_1:30391922-30391941 | Msa0018210:CDS | 45.0% | |
| GTGTCTGTTCATTGCTCAAC+TGG | + | chr1_1:30392131-30392150 | Msa0018210:intron | 45.0% | |
| ACTGGTTGAACTGTCTTGTC+TGG | + | chr1_1:30392149-30392168 | Msa0018210:intron | 45.0% | |
| TGAGACTGTTTGGGAGAACA+TGG | + | chr1_1:30392573-30392592 | Msa0018210:intron | 45.0% | |
| ACGTGCTGAAGGATAAGATG+AGG | + | chr1_1:30392958-30392977 | Msa0018210:three_prime_UTR | 45.0% | |
| TGCTGAAGGATAAGATGAGG+AGG | + | chr1_1:30392961-30392980 | Msa0018210:three_prime_UTR | 45.0% | |
| GATAAGATGAGGAGGAACTC+AGG | + | chr1_1:30392969-30392988 | Msa0018210:three_prime_UTR | 45.0% | |
| !!! | TTATTTTAAAATTAAATACA+AGG | + | chr1_1:30389140-30389159 | Msa0018210:intron | 5.0% |
| GGCTAGTGAAACTGTGAAGG+TGG | - | chr1_1:30388362-30388381 | None:intergenic | 50.0% | |
| CAAAGATCGATCCGAACCGT+AGG | + | chr1_1:30388656-30388675 | Msa0018210:CDS | 50.0% | |
| AATCGTTATGCGCCACGTGT+CGG | + | chr1_1:30388706-30388725 | Msa0018210:CDS | 50.0% | |
| GGCAATTTATCACCGACACG+TGG | - | chr1_1:30388721-30388740 | None:intergenic | 50.0% | |
| !! | AGGAAGGAAGGTGCTGTTGT+TGG | + | chr1_1:30388757-30388776 | Msa0018210:CDS | 50.0% |
| CGCAGTCTTACCCAGTTTCT+TGG | + | chr1_1:30389457-30389476 | Msa0018210:intron | 50.0% | |
| TCAGCAATCGCAGCTGTTGA+AGG | + | chr1_1:30390374-30390393 | Msa0018210:CDS | 50.0% | |
| !! | TGGTGGCATTGACTCTGAAG+AGG | + | chr1_1:30390526-30390545 | Msa0018210:CDS | 50.0% |
| TGTGGAACAGCACTAGACCA+TGG | + | chr1_1:30391509-30391528 | Msa0018210:CDS | 50.0% | |
| ATCCAACAGCTGCAACACCA+TGG | - | chr1_1:30391529-30391548 | None:intergenic | 50.0% | |
| ! | GGTGTTGCAGCTGTTGGATA+CGG | + | chr1_1:30391530-30391549 | Msa0018210:CDS | 50.0% |
| GAAATTCATGGGGTGGTAGC+TGG | + | chr1_1:30391585-30391604 | Msa0018210:CDS | 50.0% | |
| AATTCATGGGGTGGTAGCTG+GGG | + | chr1_1:30391587-30391606 | Msa0018210:CDS | 50.0% | |
| TCAAGCAGAGCAGGAAAGTG+TGG | + | chr1_1:30391647-30391666 | Msa0018210:CDS | 50.0% | |
| ! | GATGGTGGCTTGATAGGTGA+AGG | - | chr1_1:30391740-30391759 | None:intergenic | 50.0% |
| ! | CAGACAGATGGTGGCTTGAT+AGG | - | chr1_1:30391746-30391765 | None:intergenic | 50.0% |
| TAGCTGTCACAGACAGATGG+TGG | - | chr1_1:30391755-30391774 | None:intergenic | 50.0% | |
| AGCTACTACAGCTGTGCTGA+AGG | + | chr1_1:30391770-30391789 | Msa0018210:CDS | 50.0% | |
| CAGCAAGTAGCAGACTCAAG+AGG | - | chr1_1:30391854-30391873 | None:intergenic | 50.0% | |
| AGGGACATCACCCTATCAAC+AGG | - | chr1_1:30392232-30392251 | None:intergenic | 50.0% | |
| ACAGGGCAAGAACAACCCAT+TGG | + | chr1_1:30392839-30392858 | Msa0018210:intron | 50.0% | |
| CAGGGCAAGAACAACCCATT+GGG | + | chr1_1:30392840-30392859 | Msa0018210:intron | 50.0% | |
| !! | GTCTGGGTGGGTTTTGTCGT+AGG | - | chr1_1:30388404-30388423 | None:intergenic | 55.0% |
| ! | ATTAGGGTTGACCCGGTTCG+CGG | + | chr1_1:30388594-30388613 | Msa0018210:CDS | 55.0% |
| GTTGGTTAGATCCGCGAACC+GGG | - | chr1_1:30388608-30388627 | None:intergenic | 55.0% | |
| ! | CGTTGGTTAGATCCGCGAAC+CGG | - | chr1_1:30388609-30388628 | None:intergenic | 55.0% |
| TTCCCGGACCCTACTTATGC+GGG | - | chr1_1:30389409-30389428 | None:intergenic | 55.0% | |
| CTTCCCGGACCCTACTTATG+CGG | - | chr1_1:30389410-30389429 | None:intergenic | 55.0% | |
| GCATAAGTAGGGTCCGGGAA+GGG | + | chr1_1:30389409-30389428 | Msa0018210:intron | 55.0% | |
| CCTTCAACAGCAACGGCGAT+AGG | - | chr1_1:30390819-30390838 | None:intergenic | 55.0% | |
| ! | CCTATCGCCGTTGCTGTTGA+AGG | + | chr1_1:30390816-30390835 | Msa0018210:CDS | 55.0% |
| ! | ATCGCCGTTGCTGTTGAAGG+AGG | + | chr1_1:30390819-30390838 | Msa0018210:CDS | 55.0% |
| ACCGCCTCCTTCAACAGCAA+CGG | - | chr1_1:30390826-30390845 | None:intergenic | 55.0% | |
| ! | TTGCTGTTGAAGGAGGCGGT+AGG | + | chr1_1:30390826-30390845 | Msa0018210:CDS | 55.0% |
| TGCTGTTGAAGGAGGCGGTA+GGG | + | chr1_1:30390827-30390846 | Msa0018210:CDS | 55.0% | |
| !! | GACCATGGTGTTGCAGCTGT+TGG | + | chr1_1:30391524-30391543 | Msa0018210:CDS | 55.0% |
| !! | TGGTGATGGTCCAGGGTTAG+GGG | - | chr1_1:30391717-30391736 | None:intergenic | 55.0% |
| !! | GTGGTGATGGTCCAGGGTTA+GGG | - | chr1_1:30391718-30391737 | None:intergenic | 55.0% |
| !! | GTGAAGGTGGTGATGGTCCA+GGG | - | chr1_1:30391724-30391743 | None:intergenic | 55.0% |
| GGTGGCTTGATAGGTGAAGG+TGG | - | chr1_1:30391737-30391756 | None:intergenic | 55.0% | |
| TTACCACCAAAGGCCCAGTG+AGG | - | chr1_1:30392897-30392916 | None:intergenic | 55.0% | |
| !! | TGCGGGGAGTTTTAGTGCGC+AGG | - | chr1_1:30389392-30389411 | None:intergenic | 60.0% |
| CTCCCCGCATAAGTAGGGTC+CGG | + | chr1_1:30389403-30389422 | Msa0018210:intron | 60.0% | |
| TCCCCGCATAAGTAGGGTCC+GGG | + | chr1_1:30389404-30389423 | Msa0018210:intron | 60.0% | |
| TCCCGGACCCTACTTATGCG+GGG | - | chr1_1:30389408-30389427 | None:intergenic | 60.0% | |
| CGCATAAGTAGGGTCCGGGA+AGG | + | chr1_1:30389408-30389427 | Msa0018210:intron | 60.0% | |
| CAACAGCAACGGCGATAGGC+TGG | - | chr1_1:30390815-30390834 | None:intergenic | 60.0% | |
| ! | GCCGTTGCTGTTGAAGGAGG+CGG | + | chr1_1:30390822-30390841 | Msa0018210:CDS | 60.0% |
| GTGATGGTCCAGGGTTAGGG+GGG | - | chr1_1:30391715-30391734 | None:intergenic | 60.0% | |
| ! | GGTGATGGTCCAGGGTTAGG+GGG | - | chr1_1:30391716-30391735 | None:intergenic | 60.0% |
| !! | GGTGGTGATGGTCCAGGGTT+AGG | - | chr1_1:30391719-30391738 | None:intergenic | 60.0% |
| !! | GGTGAAGGTGGTGATGGTCC+AGG | - | chr1_1:30391725-30391744 | None:intergenic | 60.0% |
| CCAGCACGAGTGTCACAGAC+AGG | - | chr1_1:30391911-30391930 | None:intergenic | 60.0% | |
| CCTGTCTGTGACACTCGTGC+TGG | + | chr1_1:30391908-30391927 | Msa0018210:CDS | 60.0% | |
| CACTCCTGCCAAGCCTCACT+GGG | + | chr1_1:30392881-30392900 | Msa0018210:CDS | 60.0% | |
| ACCAAAGGCCCAGTGAGGCT+TGG | - | chr1_1:30392892-30392911 | None:intergenic | 60.0% | |
| AAGCCTCACTGGGCCTTTGG+TGG | + | chr1_1:30392891-30392910 | Msa0018210:CDS | 60.0% | |
| GGTGGTAGCTGGGGCGAACA+AGG | + | chr1_1:30391596-30391615 | Msa0018210:CDS | 65.0% | |
| GGAGAGAACCCCCCTAACCC+TGG | + | chr1_1:30391704-30391723 | Msa0018210:CDS | 65.0% | |
| GCACTCCTGCCAAGCCTCAC+TGG | + | chr1_1:30392880-30392899 | Msa0018210:CDS | 65.0% | |
| AAGGCCCAGTGAGGCTTGGC+AGG | - | chr1_1:30392888-30392907 | None:intergenic | 65.0% | |
| GCCAAGCCTCACTGGGCCTT+TGG | + | chr1_1:30392888-30392907 | Msa0018210:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 30388281 | 30393299 | 30388281 | ID=Msa0018210;Name=Msa0018210 |
| chr1_1 | mRNA | 30388281 | 30393299 | 30388281 | ID=Msa0018210-mRNA-1;Parent=Msa0018210;Name=Msa0018210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=38|1|1|1|1|1|5|361|469 |
| chr1_1 | exon | 30388281 | 30388802 | 30388281 | ID=Msa0018210-mRNA-1:exon:10157;Parent=Msa0018210-mRNA-1 |
| chr1_1 | exon | 30390357 | 30390592 | 30390357 | ID=Msa0018210-mRNA-1:exon:10158;Parent=Msa0018210-mRNA-1 |
| chr1_1 | exon | 30390729 | 30390869 | 30390729 | ID=Msa0018210-mRNA-1:exon:10159;Parent=Msa0018210-mRNA-1 |
| chr1_1 | exon | 30391491 | 30391943 | 30391491 | ID=Msa0018210-mRNA-1:exon:10160;Parent=Msa0018210-mRNA-1 |
| chr1_1 | exon | 30392843 | 30393299 | 30392843 | ID=Msa0018210-mRNA-1:exon:10161;Parent=Msa0018210-mRNA-1 |
| chr1_1 | five_prime_UTR | 30388281 | 30388318 | 30388281 | ID=Msa0018210-mRNA-1:five_prime_utr;Parent=Msa0018210-mRNA-1 |
| chr1_1 | CDS | 30388319 | 30388802 | 30388319 | ID=Msa0018210-mRNA-1:cds;Parent=Msa0018210-mRNA-1 |
| chr1_1 | CDS | 30390357 | 30390592 | 30390357 | ID=Msa0018210-mRNA-1:cds;Parent=Msa0018210-mRNA-1 |
| chr1_1 | CDS | 30390729 | 30390869 | 30390729 | ID=Msa0018210-mRNA-1:cds;Parent=Msa0018210-mRNA-1 |
| chr1_1 | CDS | 30391491 | 30391943 | 30391491 | ID=Msa0018210-mRNA-1:cds;Parent=Msa0018210-mRNA-1 |
| chr1_1 | CDS | 30392843 | 30392938 | 30392843 | ID=Msa0018210-mRNA-1:cds;Parent=Msa0018210-mRNA-1 |
| chr1_1 | three_prime_UTR | 30392939 | 30393299 | 30392939 | ID=Msa0018210-mRNA-1:three_prime_utr;Parent=Msa0018210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
