AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0061150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061150 MtrunA17_Chr1g0161051 96.651 209 7 0 1 209 1 209 6.90e-153 422
Msa0061150 MtrunA17_Chr1g0161061 61.463 205 67 1 1 205 1 193 1.91e-89 261
Msa0061150 MtrunA17_Chr1g0186321 50.000 168 84 0 33 200 62 229 4.63e-57 180
Msa0061150 MtrunA17_Chr7g0274451 48.810 168 86 0 33 200 64 231 6.12e-55 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061150 AT1G70680.1 63.187 182 67 0 24 205 9 190 8.02e-82 242
Msa0061150 AT1G70670.1 59.890 182 73 0 26 207 10 191 1.60e-79 236
Msa0061150 AT1G23240.3 57.485 167 71 0 33 199 2 168 3.63e-69 209
Msa0061150 AT1G23240.1 57.485 167 71 0 33 199 28 194 4.87e-69 210
Msa0061150 AT1G23240.4 57.485 167 71 0 33 199 37 203 7.32e-69 210
Msa0061150 AT1G70680.2 62.500 152 57 0 54 205 5 156 2.87e-64 196
Msa0061150 AT5G55240.1 45.989 187 97 1 22 204 49 235 7.45e-55 175
Msa0061150 AT4G26740.1 46.591 176 90 1 29 200 57 232 1.88e-54 174
Msa0061150 AT2G33380.1 45.562 169 92 0 33 201 60 228 7.73e-52 167
Msa0061150 AT1G23240.2 59.055 127 52 0 33 159 37 163 9.73e-52 165
Msa0061150 AT1G23250.2 48.252 143 71 2 57 199 20 159 1.42e-40 136
Msa0061150 AT1G23250.1 48.252 143 71 2 57 199 50 189 6.26e-40 135
Msa0061150 AT2G33380.2 38.462 169 62 2 33 201 60 186 1.49e-37 129
Msa0061150 AT5G29560.1 48.148 108 56 0 33 140 63 170 3.63e-32 115

Find 52 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACACTTATAAGTTAATT+TGG 0.174035 1_2:-19156374 Msa0061150:five_prime_UTR
AGACTATAGGTGTTGGAATT+TGG 0.178403 1_2:+19156430 None:intergenic
TCCTAATTCGGTTGGTAATT+AGG 0.198294 1_2:-19152995 Msa0061150:exon
ACAACAGCAATGCGTGAAAT+TGG 0.210121 1_2:-19155586 Msa0061150:intron
AAGCAAACCATTCTTGTCTT+TGG 0.246204 1_2:+19153099 None:intergenic
CTTGTTTGAATTACTGAAAA+AGG 0.283522 1_2:-19153041 Msa0061150:CDS
TCCTAATTACCAACCGAATT+AGG 0.299438 1_2:+19152994 None:intergenic
TGGATATTCTTAACTTCAAT+TGG 0.307296 1_2:+19153876 None:intergenic
TAATGTCACATTATTTGTTA+TGG 0.320483 1_2:+19156471 None:intergenic
AGAATTACTTCATCCTAATT+CGG 0.349772 1_2:-19153007 Msa0061150:exon
TCATCATATGTTAAAGCATT+TGG 0.356094 1_2:+19153629 None:intergenic
CACTCCCATGTTTGCCCCGT+TGG 0.374563 1_2:+19153856 None:intergenic
TTTACACAGTAATTTGATTA+CGG 0.390532 1_2:-19152885 Msa0061150:three_prime_UTR
AACCTTCCTTTGACATCTTT+AGG 0.422579 1_2:+19153575 None:intergenic
TTCTTGTTATCATATGATAC+AGG 0.422673 1_2:+19156269 None:intergenic
TCATATGTAGGATTTGTTGA+TGG 0.435999 1_2:-19156158 Msa0061150:intron
CAACAGCAATGCGTGAAATT+GGG 0.440569 1_2:-19155585 Msa0061150:intron
TTCTTTGACTTGAATCATGA+TGG 0.443395 1_2:-19156077 Msa0061150:CDS
GGGTTGGTAGCTTTGTTGAA+TGG 0.445777 1_2:-19153141 Msa0061150:CDS
AATATCCAACGGGGCAAACA+TGG 0.456851 1_2:-19153861 Msa0061150:CDS
TGAAGTTAAGAATATCCAAC+GGG 0.458555 1_2:-19153871 Msa0061150:CDS
GTTTGTTGCATCTAAATTTG+AGG 0.466576 1_2:-19153681 Msa0061150:CDS
ATGATGGTGTTATTTATCCA+TGG 0.477891 1_2:-19156061 Msa0061150:CDS
TATATATAGACTATAGGTGT+TGG 0.478625 1_2:+19156423 None:intergenic
AAACTTGCCAAAGACAAGAA+TGG 0.495506 1_2:-19153106 Msa0061150:CDS
TATCCATGGGAGACTTTCCA+AGG 0.502495 1_2:-19156047 Msa0061150:intron
TTCTATATCGACAAAGCAAA+AGG 0.505863 1_2:-19152968 Msa0061150:three_prime_UTR
TGTGTATATATATAGACTAT+AGG 0.509823 1_2:+19156417 None:intergenic
TTACTTCATCCTAATTCGGT+TGG 0.510841 1_2:-19153003 Msa0061150:exon
GGCAAACATGGGAGTGACAC+TGG 0.512670 1_2:-19153849 Msa0061150:CDS
AGGATTTGTTGATGGTATTG+AGG 0.529818 1_2:-19156150 Msa0061150:CDS
ACAATCCGAGGAGTTTATGA+TGG 0.535320 1_2:-19153067 Msa0061150:CDS
TGATGGTGTTATTTATCCAT+GGG 0.540816 1_2:-19156060 Msa0061150:CDS
GCAATGCGTGAAATTGGGAG+TGG 0.555445 1_2:-19155580 Msa0061150:CDS
AGCTTCCATCATAAACTCCT+CGG 0.564407 1_2:+19153062 None:intergenic
AGAGAGCCTAAAGATGTCAA+AGG 0.568594 1_2:-19153581 Msa0061150:CDS
ATTTGGAAAGCGTTGCGTGA+AGG 0.598190 1_2:+19156447 None:intergenic
AGCCTAAAGATGTCAAAGGA+AGG 0.598867 1_2:-19153577 Msa0061150:intron
CAATGCGTGAAATTGGGAGT+GGG 0.601313 1_2:-19155579 Msa0061150:CDS
AAACCTTGGAAAGTCTCCCA+TGG 0.606392 1_2:+19156044 None:intergenic
ACTGGAGCATATGATTCTGA+AGG 0.615429 1_2:-19153831 Msa0061150:CDS
ATATCCAACGGGGCAAACAT+GGG 0.618740 1_2:-19153860 Msa0061150:CDS
CAGGGCGAGTTGTCTGACTG+AGG 0.618929 1_2:+19155515 None:intergenic
TAGAAAACGCTTAAGCAACA+AGG 0.623303 1_2:+19156314 None:intergenic
TTGAAGTTAAGAATATCCAA+CGG 0.624281 1_2:-19153872 Msa0061150:CDS
GATAACAAGAAACTAGAGGA+AGG 0.624914 1_2:-19156257 Msa0061150:intron
AGGGCGAGTTGTCTGACTGA+GGG 0.633873 1_2:+19155516 None:intergenic
GAGCATATGATTCTGAAGGA+AGG 0.661835 1_2:-19153827 Msa0061150:intron
ATATGATAACAAGAAACTAG+AGG 0.670209 1_2:-19156261 Msa0061150:CDS
CTTCAGAAAGAAACAATCCG+AGG 0.674979 1_2:-19153079 Msa0061150:CDS
AATGCGTGAAATTGGGAGTG+GGG 0.694422 1_2:-19155578 Msa0061150:CDS
GAAGTTAAGAATATCCAACG+GGG 0.810368 1_2:-19153870 Msa0061150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAAATAATAATATTT+TGG - chr1_2:19154824-19154843 Msa0061150:intron 0.0%
!! AAAGATTATATCTTATAATT+TGG - chr1_2:19154649-19154668 Msa0061150:intron 10.0%
!! TTAAATTTCAATTCATATGT+AGG - chr1_2:19153224-19153243 Msa0061150:intron 15.0%
!!! AATAACACTTAAATTTTGTA+AGG - chr1_2:19153736-19153755 Msa0061150:intron 15.0%
!! TATTGAATAACCAATATATT+TGG + chr1_2:19154391-19154410 None:intergenic 15.0%
!!! TAATTAATTTTTTTTGGTAG+TGG + chr1_2:19155117-19155136 None:intergenic 15.0%
!! TAAACAATTAATTGTGTATA+TGG - chr1_2:19155909-19155928 Msa0061150:intron 15.0%
!! TATTTATTAAATGATGTATG+TGG + chr1_2:19155948-19155967 None:intergenic 15.0%
!!! TAATGTCACATTATTTGTTA+TGG + chr1_2:19152926-19152945 None:intergenic 20.0%
!! TGTGTATATATATAGACTAT+AGG + chr1_2:19152980-19152999 None:intergenic 20.0%
!!! AAAAAGTGCTTTTTAGTATT+TGG + chr1_2:19153046-19153065 None:intergenic 20.0%
!!! CTTTTATGTAAAAAAAACCT+TGG + chr1_2:19153367-19153386 None:intergenic 20.0%
!!! CAAGGTTTTTTTTACATAAA+AGG - chr1_2:19153365-19153384 Msa0061150:intron 20.0%
!! AGTTATTAAGCTTCATAATT+AGG - chr1_2:19153459-19153478 Msa0061150:intron 20.0%
!! TTCAATTAGACATTGAATTT+GGG + chr1_2:19153501-19153520 None:intergenic 20.0%
!!! TTCTGTTTGCTAAAATAAAT+AGG + chr1_2:19153534-19153553 None:intergenic 20.0%
!! GAATGATACAATAAACTATT+TGG + chr1_2:19153588-19153607 None:intergenic 20.0%
!! TCTTAACATGTTAATTGTTA+TGG + chr1_2:19153691-19153710 None:intergenic 20.0%
!! ACTTGAAAAGATTAATACAT+TGG - chr1_2:19153713-19153732 Msa0061150:intron 20.0%
!!! AAATTTTGTAAGGAGAAAAA+AGG - chr1_2:19153746-19153765 Msa0061150:intron 20.0%
!!! ACATCTTATAATTTTCTTCT+CGG - chr1_2:19153920-19153939 Msa0061150:intron 20.0%
!!! CTTTTTTTTTCTTCTTGAAT+TGG - chr1_2:19153976-19153995 Msa0061150:intron 20.0%
!!! AGCAATTTTGATATTTTTTC+TGG - chr1_2:19154137-19154156 Msa0061150:intron 20.0%
!!! AATGTGAAACTTTAATTTGT+AGG - chr1_2:19154184-19154203 Msa0061150:intron 20.0%
!! AATATATCGACCAAATATAT+TGG - chr1_2:19154378-19154397 Msa0061150:intron 20.0%
!! TATTTACATAAGTATCTTAG+TGG + chr1_2:19154804-19154823 None:intergenic 20.0%
!!! ATATTTTGGTCTCAAAATTT+TGG - chr1_2:19154838-19154857 Msa0061150:intron 20.0%
!!! TACAGAATTTTCAATATACT+CGG + chr1_2:19154915-19154934 None:intergenic 20.0%
!!! ACTCTCTTTTAAAATACTTT+TGG + chr1_2:19154956-19154975 None:intergenic 20.0%
!!! TTCATAAGTCAAGTTTTTAT+TGG + chr1_2:19155328-19155347 None:intergenic 20.0%
!! TACTTATGCTATCATTTATA+TGG - chr1_2:19155457-19155476 Msa0061150:intron 20.0%
!! TTTACACAGTAATTTGATTA+CGG - chr1_2:19156509-19156528 Msa0061150:five_prime_UTR 20.0%
! TATATATAGACTATAGGTGT+TGG + chr1_2:19152974-19152993 None:intergenic 25.0%
!!! AACTTATAAGTGTTGCTTTT+TGG + chr1_2:19153016-19153035 None:intergenic 25.0%
! GCAACACTTATAAGTTAATT+TGG - chr1_2:19153020-19153039 Msa0061150:CDS 25.0%
!! TTCTTGTTATCATATGATAC+AGG + chr1_2:19153128-19153147 None:intergenic 25.0%
! ATATGATAACAAGAAACTAG+AGG - chr1_2:19153133-19153152 Msa0061150:CDS 25.0%
! ATTACTTGAGCTAAACTATT+TGG + chr1_2:19153412-19153431 None:intergenic 25.0%
! GTTCAATTAGACATTGAATT+TGG + chr1_2:19153502-19153521 None:intergenic 25.0%
! AAACAGAACCGAAATAAATT+CGG - chr1_2:19153546-19153565 Msa0061150:intron 25.0%
! TATTTGGCTGAAAATTGATT+TGG + chr1_2:19153572-19153591 None:intergenic 25.0%
! AGAAAAAAGGAATTTGATAG+TGG - chr1_2:19153759-19153778 Msa0061150:intron 25.0%
! CATAAAGAGATTTACTTACA+GGG + chr1_2:19153900-19153919 None:intergenic 25.0%
! TCATAAAGAGATTTACTTAC+AGG + chr1_2:19153901-19153920 None:intergenic 25.0%
!! TTTTTCTTCTTGAATTGGAT+AGG - chr1_2:19153981-19154000 Msa0061150:intron 25.0%
!!! TCATCGAATCAATCTTTTTT+TGG + chr1_2:19154510-19154529 None:intergenic 25.0%
! ACTCAAAAAAGATATTTGAG+CGG - chr1_2:19154529-19154548 Msa0061150:intron 25.0%
!!! AAAGTTAGAAGTATCACTTT+CGG - chr1_2:19154682-19154701 Msa0061150:intron 25.0%
! AAGTAATGTTCGTTTAAAAG+AGG + chr1_2:19155269-19155288 None:intergenic 25.0%
! ATTAATGTTATACGACCTTA+TGG + chr1_2:19155296-19155315 None:intergenic 25.0%
!!! GTCAAGTTTTTATTGGTTAA+GGG + chr1_2:19155321-19155340 None:intergenic 25.0%
!!! AGTCAAGTTTTTATTGGTTA+AGG + chr1_2:19155322-19155341 None:intergenic 25.0%
! TTAACTTCAATTGGAAAAAG+TGG + chr1_2:19155512-19155531 None:intergenic 25.0%
! TGGATATTCTTAACTTCAAT+TGG + chr1_2:19155521-19155540 None:intergenic 25.0%
! TTGAAGTTAAGAATATCCAA+CGG - chr1_2:19155522-19155541 Msa0061150:CDS 25.0%
!! TCATCATATGTTAAAGCATT+TGG + chr1_2:19155768-19155787 None:intergenic 25.0%
! TGACTAGAGACTATATATAT+AGG + chr1_2:19155858-19155877 None:intergenic 25.0%
! CTTCAAATTATTAGTTGTGT+CGG - chr1_2:19156111-19156130 Msa0061150:CDS 25.0%
! TAATTAATACTCGTATATGC+AGG - chr1_2:19156232-19156251 Msa0061150:intron 25.0%
! AATTAATACTCGTATATGCA+GGG - chr1_2:19156233-19156252 Msa0061150:intron 25.0%
! CTTGTTTGAATTACTGAAAA+AGG - chr1_2:19156353-19156372 Msa0061150:five_prime_UTR 25.0%
! AGAATTACTTCATCCTAATT+CGG - chr1_2:19156387-19156406 Msa0061150:five_prime_UTR 25.0%
! AAGCGTTTTCTACACTAATA+TGG - chr1_2:19153091-19153110 Msa0061150:CDS 30.0%
!! TCATATGTAGGATTTGTTGA+TGG - chr1_2:19153236-19153255 Msa0061150:intron 30.0%
!! ACATTTTCATGATCTGGAAT+GGG + chr1_2:19153278-19153297 None:intergenic 30.0%
! AACATTTTCATGATCTGGAA+TGG + chr1_2:19153279-19153298 None:intergenic 30.0%
! TGAAGAACATTTTCATGATC+TGG + chr1_2:19153284-19153303 None:intergenic 30.0%
!! TTCTTTGACTTGAATCATGA+TGG - chr1_2:19153317-19153336 Msa0061150:intron 30.0%
!! ATGATGGTGTTATTTATCCA+TGG - chr1_2:19153333-19153352 Msa0061150:intron 30.0%
!! TGATGGTGTTATTTATCCAT+GGG - chr1_2:19153334-19153353 Msa0061150:intron 30.0%
GAAGCTTAATAACTACTACT+TGG + chr1_2:19153453-19153472 None:intergenic 30.0%
! TGATTTGGCCGAATTTATTT+CGG + chr1_2:19153557-19153576 None:intergenic 30.0%
!!! TGGTTGAAACTGAAGTTTTT+TGG + chr1_2:19154490-19154509 None:intergenic 30.0%
! TTTTGGTCTCAAAATTTTGG+AGG - chr1_2:19154841-19154860 Msa0061150:intron 30.0%
!!! TGACATAGCTGGTTTTTAAA+GGG + chr1_2:19154892-19154911 None:intergenic 30.0%
!! GTTTTAGTAACCTTAGTCTT+GGG + chr1_2:19154982-19155001 None:intergenic 30.0%
! TTGTAGATCTAAAACTCCTA+GGG + chr1_2:19155004-19155023 None:intergenic 30.0%
! ATTGTAGATCTAAAACTCCT+AGG + chr1_2:19155005-19155024 None:intergenic 30.0%
TGCATAAAATATGCAAGATC+CGG - chr1_2:19155077-19155096 Msa0061150:intron 30.0%
!!! TAATTTTTTTTGGTAGTGGC+CGG + chr1_2:19155113-19155132 None:intergenic 30.0%
!! GAACATTACTTTTGTCCATA+AGG - chr1_2:19155278-19155297 Msa0061150:intron 30.0%
TTATATGGTTCTTGTTGAGT+AGG - chr1_2:19155472-19155491 Msa0061150:intron 30.0%
TATATGGTTCTTGTTGAGTA+GGG - chr1_2:19155473-19155492 Msa0061150:intron 30.0%
TGAAGTTAAGAATATCCAAC+GGG - chr1_2:19155523-19155542 Msa0061150:CDS 30.0%
! GTTTGTTGCATCTAAATTTG+AGG - chr1_2:19155713-19155732 Msa0061150:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr1_2:19156074-19156093 None:intergenic 30.0%
TTCTATATCGACAAAGCAAA+AGG - chr1_2:19156426-19156445 Msa0061150:five_prime_UTR 30.0%
!! AGACTATAGGTGTTGGAATT+TGG + chr1_2:19152967-19152986 None:intergenic 35.0%
TAGAAAACGCTTAAGCAACA+AGG + chr1_2:19153083-19153102 None:intergenic 35.0%
GATAACAAGAAACTAGAGGA+AGG - chr1_2:19153137-19153156 Msa0061150:CDS 35.0%
!! AGGATTTGTTGATGGTATTG+AGG - chr1_2:19153244-19153263 Msa0061150:intron 35.0%
TGAGCTAAACTATTTGGTCA+TGG + chr1_2:19153406-19153425 None:intergenic 35.0%
TCTGGTTGAACTATGACATA+TGG - chr1_2:19154155-19154174 Msa0061150:intron 35.0%
CACAACTCTCTTCAACATAT+AGG + chr1_2:19154741-19154760 None:intergenic 35.0%
AGAGAGTTGTGAGAAATTAG+AGG - chr1_2:19154750-19154769 Msa0061150:intron 35.0%
AAGAGAGTCTTGAGGATATA+TGG - chr1_2:19154776-19154795 Msa0061150:intron 35.0%
!!! GACATAGCTGGTTTTTAAAG+GGG + chr1_2:19154891-19154910 None:intergenic 35.0%
!!! GTGACATAGCTGGTTTTTAA+AGG + chr1_2:19154893-19154912 None:intergenic 35.0%
!! GGTTTTAGTAACCTTAGTCT+TGG + chr1_2:19154983-19155002 None:intergenic 35.0%
ACTAAGGTTACTAAAACCCT+AGG - chr1_2:19154985-19155004 Msa0061150:intron 35.0%
GCATAAAATATGCAAGATCC+GGG - chr1_2:19155078-19155097 Msa0061150:intron 35.0%
CATAAAATATGCAAGATCCG+GGG - chr1_2:19155079-19155098 Msa0061150:intron 35.0%
!!! AATTTTTTTTGGTAGTGGCC+GGG + chr1_2:19155112-19155131 None:intergenic 35.0%
CAATTGGAAAAAGTGGAGAT+GGG + chr1_2:19155505-19155524 None:intergenic 35.0%
TCAATTGGAAAAAGTGGAGA+TGG + chr1_2:19155506-19155525 None:intergenic 35.0%
GAAGTTAAGAATATCCAACG+GGG - chr1_2:19155524-19155543 Msa0061150:CDS 35.0%
AACCTTCCTTTGACATCTTT+AGG + chr1_2:19155822-19155841 None:intergenic 35.0%
! AAATTATTAGTTGTGTCGGC+AGG - chr1_2:19156115-19156134 Msa0061150:CDS 35.0%
AAACTTGCCAAAGACAAGAA+TGG - chr1_2:19156288-19156307 Msa0061150:exon 35.0%
AAGCAAACCATTCTTGTCTT+TGG + chr1_2:19156298-19156317 None:intergenic 35.0%
TTACTTCATCCTAATTCGGT+TGG - chr1_2:19156391-19156410 Msa0061150:five_prime_UTR 35.0%
!! TCCTAATTCGGTTGGTAATT+AGG - chr1_2:19156399-19156418 Msa0061150:five_prime_UTR 35.0%
TCCTAATTACCAACCGAATT+AGG + chr1_2:19156403-19156422 None:intergenic 35.0%
ACAACAGCAATGCGTGAAAT+TGG - chr1_2:19153808-19153827 Msa0061150:intron 40.0%
CAACAGCAATGCGTGAAATT+GGG - chr1_2:19153809-19153828 Msa0061150:intron 40.0%
!!! AGCTGCTATTTTCATCAACG+TGG - chr1_2:19153855-19153874 Msa0061150:CDS 40.0%
CAAAATTGCTAGCTCAAACG+CGG + chr1_2:19154127-19154146 None:intergenic 40.0%
CATCAAGATATCCTCATTCG+TGG + chr1_2:19154568-19154587 None:intergenic 40.0%
AGAGGTAAAAGAGAGTCTTG+AGG - chr1_2:19154768-19154787 Msa0061150:intron 40.0%
TGAAAATAGCTCAAGAGAGC+TGG + chr1_2:19154868-19154887 None:intergenic 40.0%
! AATATACTCGGTGACATAGC+TGG + chr1_2:19154903-19154922 None:intergenic 40.0%
!!! ATTTTTTTTGGTAGTGGCCG+GGG + chr1_2:19155111-19155130 None:intergenic 40.0%
CCTATATGTTCAGTGAGAGT+TGG + chr1_2:19155384-19155403 None:intergenic 40.0%
CCAACTCTCACTGAACATAT+AGG - chr1_2:19155381-19155400 Msa0061150:intron 40.0%
ACTGGAGCATATGATTCTGA+AGG - chr1_2:19155563-19155582 Msa0061150:CDS 40.0%
! GAGCATATGATTCTGAAGGA+AGG - chr1_2:19155567-19155586 Msa0061150:CDS 40.0%
AGAGAGCCTAAAGATGTCAA+AGG - chr1_2:19155813-19155832 Msa0061150:intron 40.0%
AGCCTAAAGATGTCAAAGGA+AGG - chr1_2:19155817-19155836 Msa0061150:intron 40.0%
TAGTGACCAGCTATAAAGCA+CGG - chr1_2:19155996-19156015 Msa0061150:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG + chr1_2:19156068-19156087 None:intergenic 40.0%
TCATCTATGAAGCACGGATA+CGG + chr1_2:19156172-19156191 None:intergenic 40.0%
AATACTCGTATATGCAGGGT+TGG - chr1_2:19156237-19156256 Msa0061150:intron 40.0%
CTTCAGAAAGAAACAATCCG+AGG - chr1_2:19156315-19156334 Msa0061150:five_prime_UTR 40.0%
ACAATCCGAGGAGTTTATGA+TGG - chr1_2:19156327-19156346 Msa0061150:five_prime_UTR 40.0%
AGCTTCCATCATAAACTCCT+CGG + chr1_2:19156335-19156354 None:intergenic 40.0%
!! ATTTGGAAAGCGTTGCGTGA+AGG + chr1_2:19152950-19152969 None:intergenic 45.0%
TATCCATGGGAGACTTTCCA+AGG - chr1_2:19153347-19153366 Msa0061150:intron 45.0%
AAACCTTGGAAAGTCTCCCA+TGG + chr1_2:19153353-19153372 None:intergenic 45.0%
CAATGCGTGAAATTGGGAGT+GGG - chr1_2:19153815-19153834 Msa0061150:intron 45.0%
AATGCGTGAAATTGGGAGTG+GGG - chr1_2:19153816-19153835 Msa0061150:intron 45.0%
AAGTGCAAATGCCACGAATG+AGG - chr1_2:19154554-19154573 Msa0061150:intron 45.0%
AGTTATGTCACCTTGCGTGT+AGG - chr1_2:19154709-19154728 Msa0061150:intron 45.0%
GTTATGTCACCTTGCGTGTA+GGG - chr1_2:19154710-19154729 Msa0061150:intron 45.0%
TGAGCTTAACTCAGCTGGTT+GGG - chr1_2:19155050-19155069 Msa0061150:intron 45.0%
AATATCCAACGGGGCAAACA+TGG - chr1_2:19155533-19155552 Msa0061150:CDS 45.0%
ATATCCAACGGGGCAAACAT+GGG - chr1_2:19155534-19155553 Msa0061150:CDS 45.0%
TATAAAGCACGGACACTCCT+CGG - chr1_2:19156007-19156026 Msa0061150:intron 45.0%
ACACGACATATGTTCGACAC+CGG + chr1_2:19156045-19156064 None:intergenic 45.0%
ATCCGTGCTTCATAGATGAC+CGG - chr1_2:19156173-19156192 Msa0061150:intron 45.0%
ATCCGGTCATCTATGAAGCA+CGG + chr1_2:19156178-19156197 None:intergenic 45.0%
!! GGGTTGGTAGCTTTGTTGAA+TGG - chr1_2:19156253-19156272 Msa0061150:intron 45.0%
!! AAATAAAAAAAAATATTACT+TGG - chr1_2:19154420-19154439 Msa0061150:intron 5.0%
!!! GAAAAATAATTAATTTTTTT+TGG + chr1_2:19155123-19155142 None:intergenic 5.0%
!!! TATTAAAGAATTTTTTTTAT+AGG + chr1_2:19155620-19155639 None:intergenic 5.0%
!!! AGTAAAAATATATATTTTTT+AGG - chr1_2:19155691-19155710 Msa0061150:intron 5.0%
GCAATGCGTGAAATTGGGAG+TGG - chr1_2:19153814-19153833 Msa0061150:intron 50.0%
AGAGAGTCGTCCCAAGACTA+AGG - chr1_2:19154969-19154988 Msa0061150:intron 50.0%
GTGAGCTTAACTCAGCTGGT+TGG - chr1_2:19155049-19155068 Msa0061150:intron 50.0%
GAGTGTCCGTGCTTTATAGC+TGG + chr1_2:19156005-19156024 None:intergenic 50.0%
CACGACATATGTTCGACACC+GGG + chr1_2:19156044-19156063 None:intergenic 50.0%
GTGCTTCATAGATGACCGGA+TGG - chr1_2:19156177-19156196 Msa0061150:intron 50.0%
TCCATGCATCGTACACCATC+CGG + chr1_2:19156195-19156214 None:intergenic 50.0%
AGGGCGAGTTGTCTGACTGA+GGG + chr1_2:19153881-19153900 None:intergenic 55.0%
ATGTCACCTTGCGTGTAGGG+CGG - chr1_2:19154713-19154732 Msa0061150:intron 55.0%
CCAGCTGAGTTAAGCTCACG+AGG + chr1_2:19155048-19155067 None:intergenic 55.0%
CCTCGTGAGCTTAACTCAGC+TGG - chr1_2:19155045-19155064 Msa0061150:intron 55.0%
AAGATCCGGGGTTCAAACCC+CGG - chr1_2:19155091-19155110 Msa0061150:intron 55.0%
GGCAAACATGGGAGTGACAC+TGG - chr1_2:19155545-19155564 Msa0061150:CDS 55.0%
ATGAAGCACGGATACGGACG+CGG + chr1_2:19156166-19156185 None:intergenic 55.0%
ACCGGATGGTGTACGATGCA+TGG - chr1_2:19156191-19156210 Msa0061150:intron 55.0%
CAGGGCGAGTTGTCTGACTG+AGG + chr1_2:19153882-19153901 None:intergenic 60.0%
TAGGAACCGCCCTACACGCA+AGG + chr1_2:19154722-19154741 None:intergenic 60.0%
CACTCCCATGTTTGCCCCGT+TGG + chr1_2:19155541-19155560 None:intergenic 60.0%
CGCGGACACTGGACACAACA+CGG + chr1_2:19156148-19156167 None:intergenic 60.0%
AGTGGCCGGGGTTTGAACCC+CGG + chr1_2:19155099-19155118 None:intergenic 65.0%
GCACGGACACTCCTCGGACT+AGG - chr1_2:19156013-19156032 Msa0061150:intron 65.0%
! TCCTCGGACTAGGCGTGTCC+CGG - chr1_2:19156023-19156042 Msa0061150:intron 65.0%
ACGGATACGGACGCGGACAC+TGG + chr1_2:19156159-19156178 None:intergenic 65.0%
ACCGGGACACGCCTAGTCCG+AGG + chr1_2:19156027-19156046 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 19152835 19156581 19152835 ID=Msa0061150;Name=Msa0061150
chr1_2 mRNA 19152835 19156581 19152835 ID=Msa0061150-mRNA-1;Parent=Msa0061150;Name=Msa0061150-mRNA-1;_AED=0.31;_eAED=0.31;_QI=275|1|1|1|1|1|6|177|209
chr1_2 exon 19152835 19153162 19152835 ID=Msa0061150-mRNA-1:exon:7433;Parent=Msa0061150-mRNA-1
chr1_2 exon 19153578 19153703 19153578 ID=Msa0061150-mRNA-1:exon:7432;Parent=Msa0061150-mRNA-1
chr1_2 exon 19153828 19153922 19153828 ID=Msa0061150-mRNA-1:exon:7431;Parent=Msa0061150-mRNA-1
chr1_2 exon 19155516 19155601 19155516 ID=Msa0061150-mRNA-1:exon:7430;Parent=Msa0061150-mRNA-1
chr1_2 exon 19156048 19156170 19156048 ID=Msa0061150-mRNA-1:exon:7429;Parent=Msa0061150-mRNA-1
chr1_2 exon 19156258 19156581 19156258 ID=Msa0061150-mRNA-1:exon:7428;Parent=Msa0061150-mRNA-1
chr1_2 five_prime_UTR 19156307 19156581 19156307 ID=Msa0061150-mRNA-1:five_prime_utr;Parent=Msa0061150-mRNA-1
chr1_2 CDS 19156258 19156306 19156258 ID=Msa0061150-mRNA-1:cds;Parent=Msa0061150-mRNA-1
chr1_2 CDS 19156048 19156170 19156048 ID=Msa0061150-mRNA-1:cds;Parent=Msa0061150-mRNA-1
chr1_2 CDS 19155516 19155601 19155516 ID=Msa0061150-mRNA-1:cds;Parent=Msa0061150-mRNA-1
chr1_2 CDS 19153828 19153922 19153828 ID=Msa0061150-mRNA-1:cds;Parent=Msa0061150-mRNA-1
chr1_2 CDS 19153578 19153703 19153578 ID=Msa0061150-mRNA-1:cds;Parent=Msa0061150-mRNA-1
chr1_2 CDS 19153012 19153162 19153012 ID=Msa0061150-mRNA-1:cds;Parent=Msa0061150-mRNA-1
chr1_2 three_prime_UTR 19152835 19153011 19152835 ID=Msa0061150-mRNA-1:three_prime_utr;Parent=Msa0061150-mRNA-1
Gene Sequence

>Msa0061150

ATGGCATCTTCTTCTCCTGTATCATATGATAACAAGAAACTAGAGGAAGGATTTGTTGATGGTATTGAGGAGAAGAAACCCATTCCAGATCATGAAAATGTTCTTCAGAAACATGCTGCTTTCTTTGACTTGAATCATGATGGTGTTATTTATCCATGGGAGACTTTCCAAGCAATGCGTGAAATTGGGAGTGGGGTGTTGTTATCAACTGCAGCTGCTATTTTCATCAACGTGGCCCTCAGTCAGACAACTCGCCCTGGAAAGTTCCCATCTCCACTTTTTCCAATTGAAGTTAAGAATATCCAACGGGGCAAACATGGGAGTGACACTGGAGCATATGATTCTGAAGGAAGGTTTGTTGCATCTAAATTTGAGGAAATCTTCATCAAACATGCACATACACATCCAAATGCTTTAACATATGATGAGCTAAATGAGTTGATAAAGACAAACAGAGAGCCTAAAGATGTCAAAGGAAGGGTTGGTAGCTTTGTTGAATGGAAAATTCTTTACAAACTTGCCAAAGACAAGAATGGTTTGCTTCAGAAAGAAACAATCCGAGGAGTTTATGATGGAAGCTTGTTTGAATTACTGAAAAAGGAACATACAAAAAGAATTACTTCATCCTAA

Protein sequence

>Msa0061150

MASSSPVSYDNKKLEEGFVDGIEEKKPIPDHENVLQKHAAFFDLNHDGVIYPWETFQAMREIGSGVLLSTAAAIFINVALSQTTRPGKFPSPLFPIEVKNIQRGKHGSDTGAYDSEGRFVASKFEEIFIKHAHTHPNALTYDELNELIKTNREPKDVKGRVGSFVEWKILYKLAKDKNGLLQKETIRGVYDGSLFELLKKEHTKRITSS*