Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941540 | XP_003618750.1 | 96.821 | 346 | 11 | 0 | 1 | 346 | 1 | 346 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941540 | sp|Q9C942|CSE_ARATH | 36.513 | 304 | 179 | 5 | 50 | 346 | 36 | 332 | 4.30e-59 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000590 | Msa0941540 | 0.831974 | 1.231464e-55 | -8.615850e-47 |
| Msa0018210 | Msa0941540 | 0.806818 | 6.838718e-50 | -8.615850e-47 |
| Msa0043730 | Msa0941540 | 0.808957 | 2.398831e-50 | -8.615850e-47 |
| Msa0085720 | Msa0941540 | 0.809723 | 1.643427e-50 | -8.615850e-47 |
| Msa0617450 | Msa0941540 | 0.826290 | 2.941916e-54 | -8.615850e-47 |
| Msa0679550 | Msa0941540 | 0.812628 | 3.852951e-51 | -8.615850e-47 |
| Msa0700230 | Msa0941540 | 0.838856 | 2.242974e-57 | -8.615850e-47 |
| Msa0713350 | Msa0941540 | 0.808398 | 3.158538e-50 | -8.615850e-47 |
| Msa0748070 | Msa0941540 | 0.810476 | 1.131319e-50 | -8.615850e-47 |
| Msa0755080 | Msa0941540 | 0.808147 | 3.572508e-50 | -8.615850e-47 |
| Msa0124550 | Msa0941540 | 0.802376 | 5.776946e-49 | -8.615850e-47 |
| Msa0130520 | Msa0941540 | 0.837384 | 5.366039e-57 | -8.615850e-47 |
| Msa0175050 | Msa0941540 | 0.816211 | 6.215645e-52 | -8.615850e-47 |
| Msa0385490 | Msa0941540 | 0.812637 | 3.835559e-51 | -8.615850e-47 |
| Msa0389810 | Msa0941540 | 0.817636 | 2.975726e-52 | -8.615850e-47 |
| Msa0394340 | Msa0941540 | 0.834768 | 2.476130e-56 | -8.615850e-47 |
| Msa0468130 | Msa0941540 | 0.832402 | 9.646958e-56 | -8.615850e-47 |
| Msa0266240 | Msa0941540 | 0.809112 | 2.222500e-50 | -8.615850e-47 |
| Msa0308770 | Msa0941540 | 0.806560 | 7.751220e-50 | -8.615850e-47 |
| Msa0347610 | Msa0941540 | 0.840294 | 9.481654e-58 | -8.615850e-47 |
| Msa0489610 | Msa0941540 | 0.839911 | 1.193856e-57 | -8.615850e-47 |
| Msa0602370 | Msa0941540 | 0.816590 | 5.113295e-52 | -8.615850e-47 |
| Msa0876360 | Msa0941540 | 0.858335 | 8.839997e-63 | -8.615850e-47 |
| Msa0901320 | Msa0941540 | 0.820579 | 6.364915e-53 | -8.615850e-47 |
| Msa0930820 | Msa0941540 | 0.805601 | 1.233690e-49 | -8.615850e-47 |
| Msa0941540 | Msa0966630 | 0.844275 | 8.359858e-59 | -8.615850e-47 |
| Msa0941540 | Msa0978700 | 0.831339 | 1.765076e-55 | -8.615850e-47 |
| Msa0941540 | Msa0982270 | 0.814946 | 1.189009e-51 | -8.615850e-47 |
| Msa0941540 | Msa1001080 | 0.802245 | 6.148924e-49 | -8.615850e-47 |
| Msa0941540 | Msa1036910 | 0.807913 | 4.006609e-50 | -8.615850e-47 |
| Msa0941540 | Msa1062030 | 0.816387 | 5.677182e-52 | -8.615850e-47 |
| Msa0941540 | Msa1065110 | 0.804712 | 1.893776e-49 | -8.615850e-47 |
| Msa0941540 | Msa1094430 | 0.810434 | 1.154794e-50 | -8.615850e-47 |
| Msa0941540 | Msa1135880 | 0.815723 | 7.986034e-52 | -8.615850e-47 |
| Msa0941540 | Msa1164020 | 0.814029 | 1.896528e-51 | -8.615850e-47 |
| Msa0941540 | Msa1174310 | 0.832285 | 1.031194e-55 | -8.615850e-47 |
| Msa0941540 | Msa1174870 | 0.818521 | 1.877312e-52 | -8.615850e-47 |
| Msa0941540 | Msa1207460 | -0.809254 | 2.071707e-50 | -8.615850e-47 |
| Msa0941540 | Msa1222280 | 0.803947 | 2.733494e-49 | -8.615850e-47 |
| Msa0941540 | Msa1234690 | 0.806891 | 6.598989e-50 | -8.615850e-47 |
| Msa0941540 | Msa1234730 | 0.822026 | 2.952093e-53 | -8.615850e-47 |
| Msa0941540 | Msa1235400 | 0.805474 | 1.311872e-49 | -8.615850e-47 |
| Msa0941540 | Msa1241800 | 0.833942 | 3.989835e-56 | -8.615850e-47 |
| Msa0941540 | Msa1244930 | 0.806781 | 6.964298e-50 | -8.615850e-47 |
| Msa0941540 | Msa1276510 | 0.849775 | 2.604740e-60 | -8.615850e-47 |
| Msa0941540 | Msa1307740 | 0.830136 | 3.480651e-55 | -8.615850e-47 |
| Msa0941540 | Msa1314770 | 0.845482 | 3.950931e-59 | -8.615850e-47 |
| Msa0941540 | Msa1315110 | 0.824311 | 8.645852e-54 | -8.615850e-47 |
| Msa0941540 | Msa1325430 | 0.803539 | 3.321899e-49 | -8.615850e-47 |
| Msa0941540 | Msa1360240 | 0.800687 | 1.282491e-48 | -8.615850e-47 |
| Msa0941540 | Msa1371090 | 0.811793 | 5.860889e-51 | -8.615850e-47 |
| Msa0941540 | Msa1388860 | 0.813270 | 2.785970e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941540 | MtrunA17_Chr6g0457581 | 96.821 | 346 | 11 | 0 | 1 | 346 | 1 | 346 | 0.0 | 696 |
| Msa0941540 | MtrunA17_Chr6g0460121 | 96.233 | 292 | 11 | 0 | 55 | 346 | 18 | 309 | 0.0 | 587 |
| Msa0941540 | MtrunA17_Chr7g0215451 | 77.246 | 334 | 76 | 0 | 3 | 336 | 4 | 337 | 0.0 | 548 |
| Msa0941540 | MtrunA17_Chr1g0209741 | 57.831 | 332 | 139 | 1 | 6 | 336 | 45 | 376 | 1.57e-146 | 418 |
| Msa0941540 | MtrunA17_Chr5g0423541 | 55.556 | 333 | 147 | 1 | 6 | 337 | 59 | 391 | 7.88e-140 | 402 |
| Msa0941540 | MtrunA17_Chr6g0484431 | 60.650 | 277 | 108 | 1 | 1 | 276 | 5 | 281 | 2.96e-128 | 368 |
| Msa0941540 | MtrunA17_Chr1g0195501 | 51.525 | 295 | 142 | 1 | 52 | 345 | 6 | 300 | 5.93e-104 | 308 |
| Msa0941540 | MtrunA17_Chr7g0269371 | 46.535 | 303 | 153 | 2 | 51 | 345 | 5 | 306 | 8.90e-98 | 293 |
| Msa0941540 | MtrunA17_Chr1g0212901 | 46.690 | 287 | 153 | 0 | 51 | 337 | 7 | 293 | 2.46e-93 | 281 |
| Msa0941540 | MtrunA17_Chr4g0047891 | 40.727 | 275 | 162 | 1 | 62 | 335 | 47 | 321 | 6.06e-76 | 236 |
| Msa0941540 | MtrunA17_Chr4g0071671 | 38.380 | 284 | 162 | 4 | 65 | 341 | 41 | 318 | 1.64e-60 | 197 |
| Msa0941540 | MtrunA17_Chr1g0199771 | 34.021 | 291 | 187 | 5 | 57 | 344 | 34 | 322 | 1.29e-52 | 176 |
| Msa0941540 | MtrunA17_Chr3g0140391 | 35.507 | 276 | 161 | 8 | 66 | 336 | 107 | 370 | 3.61e-44 | 155 |
| Msa0941540 | MtrunA17_Chr6g0479331 | 35.125 | 279 | 164 | 8 | 62 | 335 | 122 | 388 | 1.35e-40 | 146 |
| Msa0941540 | MtrunA17_Chr6g0460131 | 93.878 | 49 | 3 | 0 | 1 | 49 | 1 | 49 | 5.88e-25 | 95.9 |
| Msa0941540 | MtrunA17_Chr6g0484421 | 68.182 | 66 | 21 | 0 | 277 | 342 | 1 | 66 | 1.30e-23 | 92.4 |
| Msa0941540 | MtrunA17_Chr1g0209761 | 45.455 | 66 | 36 | 0 | 270 | 335 | 12 | 77 | 1.65e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941540 | AT5G16120.3 | 66.667 | 333 | 111 | 0 | 8 | 340 | 10 | 342 | 1.21e-176 | 494 |
| Msa0941540 | AT5G16120.1 | 66.667 | 333 | 111 | 0 | 8 | 340 | 10 | 342 | 1.21e-176 | 494 |
| Msa0941540 | AT5G16120.2 | 66.667 | 333 | 111 | 0 | 8 | 340 | 28 | 360 | 1.58e-176 | 494 |
| Msa0941540 | AT5G16120.4 | 66.667 | 333 | 111 | 0 | 8 | 340 | 42 | 374 | 1.90e-176 | 494 |
| Msa0941540 | AT1G77420.1 | 56.677 | 337 | 143 | 2 | 2 | 335 | 40 | 376 | 1.01e-138 | 399 |
| Msa0941540 | AT3G62860.1 | 49.306 | 288 | 145 | 1 | 51 | 338 | 6 | 292 | 1.04e-100 | 301 |
| Msa0941540 | AT2G47630.1 | 51.049 | 286 | 139 | 1 | 51 | 335 | 6 | 291 | 2.88e-98 | 295 |
| Msa0941540 | AT2G39420.1 | 46.875 | 288 | 153 | 0 | 49 | 336 | 6 | 293 | 1.00e-95 | 287 |
| Msa0941540 | AT2G39410.2 | 44.792 | 288 | 159 | 0 | 51 | 338 | 8 | 295 | 2.42e-91 | 276 |
| Msa0941540 | AT2G39400.1 | 45.675 | 289 | 157 | 0 | 54 | 342 | 5 | 293 | 8.74e-89 | 269 |
| Msa0941540 | AT3G62860.2 | 49.798 | 247 | 124 | 0 | 92 | 338 | 3 | 249 | 1.37e-86 | 263 |
| Msa0941540 | AT3G55180.1 | 46.154 | 286 | 153 | 1 | 54 | 338 | 5 | 290 | 1.96e-85 | 261 |
| Msa0941540 | AT2G47630.2 | 53.419 | 234 | 109 | 0 | 102 | 335 | 13 | 246 | 5.72e-83 | 254 |
| Msa0941540 | AT2G47630.3 | 53.419 | 234 | 109 | 0 | 102 | 335 | 33 | 266 | 9.58e-83 | 254 |
| Msa0941540 | AT1G11090.1 | 41.522 | 289 | 168 | 1 | 50 | 337 | 26 | 314 | 1.21e-78 | 244 |
| Msa0941540 | AT3G55190.1 | 42.705 | 281 | 160 | 1 | 55 | 334 | 12 | 292 | 1.45e-77 | 241 |
| Msa0941540 | AT5G14980.1 | 35.315 | 286 | 183 | 2 | 54 | 338 | 32 | 316 | 1.09e-62 | 203 |
| Msa0941540 | AT2G39400.2 | 43.750 | 224 | 126 | 0 | 54 | 277 | 5 | 228 | 2.97e-61 | 196 |
| Msa0941540 | AT1G52760.1 | 36.513 | 304 | 179 | 5 | 50 | 346 | 36 | 332 | 4.37e-60 | 196 |
| Msa0941540 | AT5G19290.1 | 34.276 | 283 | 183 | 3 | 54 | 334 | 32 | 313 | 2.81e-58 | 191 |
| Msa0941540 | AT1G73480.1 | 32.710 | 321 | 202 | 8 | 21 | 337 | 152 | 462 | 1.96e-43 | 156 |
| Msa0941540 | AT5G11650.1 | 32.119 | 302 | 180 | 10 | 45 | 334 | 87 | 375 | 2.00e-40 | 146 |
| Msa0941540 | AT1G18360.1 | 31.392 | 309 | 193 | 9 | 36 | 337 | 85 | 381 | 5.11e-38 | 140 |
| Msa0941540 | AT2G39410.1 | 43.564 | 101 | 57 | 0 | 51 | 151 | 8 | 108 | 1.77e-26 | 102 |
| Msa0941540 | AT5G11650.2 | 29.545 | 220 | 135 | 8 | 45 | 253 | 87 | 297 | 1.31e-21 | 94.0 |
Find 63 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAATTGTGTAGAATTTA+AGG | 0.114645 | 6_3:+15363166 | Msa0941540:five_prime_UTR |
| AACCTAAGTACCTTTGATTT+TGG | 0.137143 | 6_3:-15365751 | None:intergenic |
| TATTGACCATATATTATTTA+AGG | 0.152166 | 6_3:+15363319 | Msa0941540:CDS |
| CAAAAGGGATTGAGATCTTT+TGG | 0.190232 | 6_3:+15365265 | Msa0941540:CDS |
| GATTTAGTTTCATTTGATTT+TGG | 0.237005 | 6_3:+15363108 | Msa0941540:five_prime_UTR |
| CATCAGACTCACCCTCAATT+AGG | 0.237730 | 6_3:-15367054 | None:intergenic |
| CTACCATTATTCATTCTTCA+TGG | 0.264378 | 6_3:+15366929 | Msa0941540:CDS |
| TTCTTGGTGACATCATTTCT+TGG | 0.299252 | 6_3:+15367092 | Msa0941540:CDS |
| GAAACAATAGTTCAAATTCT+TGG | 0.314715 | 6_3:+15367076 | Msa0941540:CDS |
| GCTATGGATTATCCAGGATT+TGG | 0.314731 | 6_3:+15365657 | Msa0941540:CDS |
| ATCAGACTCACCCTCAATTA+GGG | 0.336116 | 6_3:-15367053 | None:intergenic |
| GGTCTTTCAGAAGGTCTTCA+TGG | 0.347967 | 6_3:+15365678 | Msa0941540:CDS |
| TTGAATTGTGTAGAATTTAA+GGG | 0.353411 | 6_3:+15363167 | Msa0941540:five_prime_UTR |
| AAACTTGCATCATGCGGATA+TGG | 0.356929 | 6_3:+15365627 | Msa0941540:CDS |
| TGTTTGTTTCTTTCTTATCT+AGG | 0.362124 | 6_3:-15367152 | None:intergenic |
| ATCGCACCATTCCATGCTTT+AGG | 0.379419 | 6_3:-15366184 | None:intergenic |
| TAAATACCTTAAATAATATA+TGG | 0.393767 | 6_3:-15363325 | None:intergenic |
| CAATTCAAAAGACTTTGATT+TGG | 0.405862 | 6_3:-15363152 | None:intergenic |
| TCTCCATGAAGAATGAATAA+TGG | 0.413485 | 6_3:-15366932 | None:intergenic |
| GTCGGGACCATCTTATTCTT+CGG | 0.425573 | 6_3:-15366378 | None:intergenic |
| TCTTATGAGGTAAACTCAAA+AGG | 0.427343 | 6_3:+15365249 | Msa0941540:CDS |
| CAAACCTGTTCCCTCTTCTT+CGG | 0.431010 | 6_3:-15366432 | None:intergenic |
| TGTGTAGATTTCAGAGCAAA+TGG | 0.435653 | 6_3:+15366305 | Msa0941540:intron |
| AGAAAGATGAAGAGGTTACC+AGG | 0.454554 | 6_3:+15363200 | Msa0941540:exon |
| TTGGAAAAGTTGGCTTCCTA+AGG | 0.461344 | 6_3:+15365284 | Msa0941540:CDS |
| CTATAACGTTATTAGTTACA+AGG | 0.464116 | 6_3:+15366575 | Msa0941540:CDS |
| TACAATGCTTTGCTCACTGA+TGG | 0.467237 | 6_3:-15366974 | None:intergenic |
| GCAAATGGTTCCACCAAAGT+TGG | 0.494646 | 6_3:+15366320 | Msa0941540:CDS |
| CTTATGAGGTAAACTCAAAA+GGG | 0.502053 | 6_3:+15365250 | Msa0941540:CDS |
| CCAGGATTTGGTCTTTCAGA+AGG | 0.502384 | 6_3:+15365669 | Msa0941540:CDS |
| TGCTCAACATGCCCTAATTG+AGG | 0.503834 | 6_3:+15367042 | Msa0941540:CDS |
| TGCTATGAAACAGTCTTATG+AGG | 0.507438 | 6_3:+15365236 | Msa0941540:intron |
| CTTATTCTTCGGAAGAACAT+TGG | 0.509068 | 6_3:-15366367 | None:intergenic |
| ATGGTCCCGACACAGGATAT+AGG | 0.516637 | 6_3:+15366390 | Msa0941540:CDS |
| TCAACAAGCTGATCAAAACT+TGG | 0.517735 | 6_3:-15365708 | None:intergenic |
| AGATCCGAAGAAGAGGGAAC+AGG | 0.520539 | 6_3:+15366428 | Msa0941540:CDS |
| CCTTCTGAAAGACCAAATCC+TGG | 0.529189 | 6_3:-15365669 | None:intergenic |
| CATCTCCTATATCCTGTGTC+GGG | 0.529204 | 6_3:-15366395 | None:intergenic |
| GCTCAACATGCCCTAATTGA+GGG | 0.530025 | 6_3:+15367043 | Msa0941540:CDS |
| TGTTAAAATGCTAATTGCTA+TGG | 0.532325 | 6_3:+15366344 | Msa0941540:CDS |
| GCATCTCCTATATCCTGTGT+CGG | 0.533074 | 6_3:-15366396 | None:intergenic |
| CATGGAAGAGAATTGAACTC+TGG | 0.541050 | 6_3:-15366103 | None:intergenic |
| AGAGAGAGAGAAAGATGAAG+AGG | 0.543583 | 6_3:+15363192 | Msa0941540:exon |
| TGCAATTCATCATCAACCCC+TGG | 0.546322 | 6_3:-15363218 | None:intergenic |
| TCACGAGCTTGTCTTCTAGC+AGG | 0.549660 | 6_3:-15363272 | None:intergenic |
| CATTCAAAGATCCGAAGAAG+AGG | 0.560078 | 6_3:+15366421 | Msa0941540:CDS |
| GAAAGATGAAGAGGTTACCA+GGG | 0.569912 | 6_3:+15363201 | Msa0941540:exon |
| TTCATTTCTAATCCATCACA+TGG | 0.572797 | 6_3:-15364621 | None:intergenic |
| TCTACAGCAGTCCGCAGGCG+TGG | 0.573560 | 6_3:-15366603 | None:intergenic |
| GCAGTTCTACAGCAGTCCGC+AGG | 0.575669 | 6_3:-15366608 | None:intergenic |
| GAATAAGATGGTCCCGACAC+AGG | 0.586122 | 6_3:+15366383 | Msa0941540:CDS |
| GAACAGTACTCCAAAATCAA+AGG | 0.588011 | 6_3:+15365741 | Msa0941540:CDS |
| TGTTCTTCCGAAGAATAAGA+TGG | 0.590037 | 6_3:+15366371 | Msa0941540:CDS |
| TGGAATCTATGAAGCTTCGT+AGG | 0.592848 | 6_3:-15362958 | None:intergenic |
| TGATGGATTAGAAATGAAAG+AGG | 0.601962 | 6_3:+15364626 | Msa0941540:CDS |
| TGCTAGAAGACAAGCTCGTG+AGG | 0.606036 | 6_3:+15363274 | Msa0941540:CDS |
| AAACAACCTAAAGCATGGAA+TGG | 0.608006 | 6_3:+15366178 | Msa0941540:CDS |
| ATTCAAAGATCCGAAGAAGA+GGG | 0.610929 | 6_3:+15366422 | Msa0941540:CDS |
| AGAAAATGTACTTTACACAT+CGG | 0.615088 | 6_3:-15366217 | None:intergenic |
| GCTAGAAAACTTGCATCATG+CGG | 0.626869 | 6_3:+15365621 | Msa0941540:CDS |
| ACTTGAAACAACCTAAAGCA+TGG | 0.648914 | 6_3:+15366173 | Msa0941540:CDS |
| AAAGATGAAGAGGTTACCAG+GGG | 0.694425 | 6_3:+15363202 | Msa0941540:exon |
| ACAAGGATAAACCACGCCTG+CGG | 0.714990 | 6_3:+15366592 | Msa0941540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACCTTAAATAATATA+TGG | - | chr6_3:15363328-15363347 | None:intergenic | 10.0% |
| !!! | TTTTATTGAATTTTTAAAGT+TGG | + | chr6_3:15363435-15363454 | Msa0941540:intron | 10.0% |
| !! | ATTATTTAAATGTAATTGTT+TGG | - | chr6_3:15363642-15363661 | None:intergenic | 10.0% |
| !! | AAAAATTGTAAAATAATTGT+AGG | - | chr6_3:15364226-15364245 | None:intergenic | 10.0% |
| !!! | AAATTTTAATGCTAAAATAA+AGG | - | chr6_3:15364466-15364485 | None:intergenic | 10.0% |
| !! | TTTATTACATATGAAAAAAA+AGG | + | chr6_3:15367258-15367277 | Msa0941540:three_prime_UTR | 10.0% |
| !! | TATTGACCATATATTATTTA+AGG | + | chr6_3:15363319-15363338 | Msa0941540:CDS | 15.0% |
| !!! | TGTTATATACTTTTTTCATG+AGG | + | chr6_3:15363078-15363097 | Msa0941540:five_prime_UTR | 20.0% |
| !!! | GATTTAGTTTCATTTGATTT+TGG | + | chr6_3:15363108-15363127 | Msa0941540:five_prime_UTR | 20.0% |
| !!! | TTTGATTTGGTTTGTTTTAA+TGG | - | chr6_3:15363142-15363161 | None:intergenic | 20.0% |
| !! | TTTGAATTGTGTAGAATTTA+AGG | + | chr6_3:15363166-15363185 | Msa0941540:five_prime_UTR | 20.0% |
| !! | TTGAATTGTGTAGAATTTAA+GGG | + | chr6_3:15363167-15363186 | Msa0941540:five_prime_UTR | 20.0% |
| !! | AATGCTAAAATAAAGGATTA+AGG | - | chr6_3:15364459-15364478 | None:intergenic | 20.0% |
| !! | GTAAATAGTTTACTTTGAAT+TGG | + | chr6_3:15364648-15364667 | Msa0941540:intron | 20.0% |
| !!! | ATTCACATTTTGCAATTTTA+AGG | + | chr6_3:15364899-15364918 | Msa0941540:intron | 20.0% |
| !!! | TTAGACTATTGATAATTTGA+AGG | + | chr6_3:15364927-15364946 | Msa0941540:intron | 20.0% |
| !! | GATACAATCTTAAAATTTCA+AGG | + | chr6_3:15364958-15364977 | Msa0941540:intron | 20.0% |
| !! | TAAAATTTCAAGGATCAAAT+AGG | + | chr6_3:15364968-15364987 | Msa0941540:intron | 20.0% |
| !! | TTTAGTGTAATTATATGTGT+CGG | + | chr6_3:15365483-15365502 | Msa0941540:intron | 20.0% |
| !!! | TAGACTTTTATAATAGCTTA+CGG | - | chr6_3:15366738-15366757 | None:intergenic | 20.0% |
| !!! | TATATACTTTTTTCATGAGG+TGG | + | chr6_3:15363081-15363100 | Msa0941540:five_prime_UTR | 25.0% |
| !!! | TTTCATTTGATTTTGGTTTC+TGG | + | chr6_3:15363115-15363134 | Msa0941540:five_prime_UTR | 25.0% |
| !!! | TTCATTTGATTTTGGTTTCT+GGG | + | chr6_3:15363116-15363135 | Msa0941540:five_prime_UTR | 25.0% |
| ! | CAATTCAAAAGACTTTGATT+TGG | - | chr6_3:15363155-15363174 | None:intergenic | 25.0% |
| ! | GAAGATATTGAATGCAAAAA+TGG | + | chr6_3:15363241-15363260 | Msa0941540:CDS | 25.0% |
| !!! | TTGAATTTTTAAAGTTGGTC+TGG | + | chr6_3:15363440-15363459 | Msa0941540:intron | 25.0% |
| !!! | TAGTACATTGACTTTCATAT+TGG | + | chr6_3:15363813-15363832 | Msa0941540:intron | 25.0% |
| !!! | GTTTCTAGCTATTTAATGAT+AGG | + | chr6_3:15363903-15363922 | Msa0941540:intron | 25.0% |
| ! | GATAATAGAAAATGTGTTGT+TGG | - | chr6_3:15364184-15364203 | None:intergenic | 25.0% |
| ! | TATTAAGTGTGAGAGTTAAT+TGG | + | chr6_3:15364287-15364306 | Msa0941540:intron | 25.0% |
| !! | AATTGGTTTATCAGTAAACA+TGG | + | chr6_3:15364304-15364323 | Msa0941540:intron | 25.0% |
| !! | ACCTTTTGTAGTATTTAATG+TGG | + | chr6_3:15364395-15364414 | Msa0941540:intron | 25.0% |
| ! | AATAACAAAGGACAATGATA+AGG | - | chr6_3:15365188-15365207 | None:intergenic | 25.0% |
| ! | AACTAAATTGAGTTATCTTG+TGG | + | chr6_3:15365552-15365571 | Msa0941540:intron | 25.0% |
| !! | AGTAATGATTGATGATACTA+AGG | + | chr6_3:15366039-15366058 | Msa0941540:intron | 25.0% |
| !! | AAAGGTTTGGTTTATTTGTA+TGG | + | chr6_3:15366072-15366091 | Msa0941540:intron | 25.0% |
| !!! | TTTCTTTTTGGAGAATCTAT+GGG | + | chr6_3:15366127-15366146 | Msa0941540:CDS | 25.0% |
| ! | AGAAAATGTACTTTACACAT+CGG | - | chr6_3:15366220-15366239 | None:intergenic | 25.0% |
| ! | TGTTAAAATGCTAATTGCTA+TGG | + | chr6_3:15366344-15366363 | Msa0941540:CDS | 25.0% |
| !!! | ACTTTTGATGCGTTATTTTT+TGG | + | chr6_3:15366492-15366511 | Msa0941540:intron | 25.0% |
| ! | CTATAACGTTATTAGTTACA+AGG | + | chr6_3:15366575-15366594 | Msa0941540:CDS | 25.0% |
| !! | CAATTTTTGTTCGATTTCTT+CGG | - | chr6_3:15366643-15366662 | None:intergenic | 25.0% |
| !! | AATTTTCTTGTTACACTCTT+TGG | + | chr6_3:15366700-15366719 | Msa0941540:intron | 25.0% |
| ! | CATGTAATGACTATGTTTAT+AGG | + | chr6_3:15366901-15366920 | Msa0941540:intron | 25.0% |
| ! | GAAACAATAGTTCAAATTCT+TGG | + | chr6_3:15367076-15367095 | Msa0941540:CDS | 25.0% |
| !! | TGTTTGTTTCTTTCTTATCT+AGG | - | chr6_3:15367155-15367174 | None:intergenic | 25.0% |
| !!! | TCCACCTTCTTGTTTTTTTT+TGG | + | chr6_3:15362977-15362996 | Msa0941540:five_prime_UTR | 30.0% |
| TGTGCCAAAAAAAAACAAGA+AGG | - | chr6_3:15362984-15363003 | None:intergenic | 30.0% | |
| ! | GGTATTTATGTCTTTGCTTT+TGG | + | chr6_3:15363340-15363359 | Msa0941540:intron | 30.0% |
| !! | TCTTCTTGAGTTTTTGTTTC+TGG | + | chr6_3:15363484-15363503 | Msa0941540:intron | 30.0% |
| !! | CTTCTTGAGTTTTTGTTTCT+GGG | + | chr6_3:15363485-15363504 | Msa0941540:intron | 30.0% |
| !!! | GTTTTTTTAGTGCACCAAAT+TGG | + | chr6_3:15363530-15363549 | Msa0941540:intron | 30.0% |
| TAATCACATGTATGTAACCA+AGG | - | chr6_3:15363573-15363592 | None:intergenic | 30.0% | |
| ! | TTGACTTTCATATTGGTAGT+TGG | + | chr6_3:15363820-15363839 | Msa0941540:intron | 30.0% |
| AAATAGCTAGAAACTAGAAC+AGG | - | chr6_3:15363897-15363916 | None:intergenic | 30.0% | |
| ! | AAACACATGGAGAATTTTCT+TGG | - | chr6_3:15363953-15363972 | None:intergenic | 30.0% |
| ACATATGCACATAAAACACA+TGG | - | chr6_3:15363966-15363985 | None:intergenic | 30.0% | |
| ! | TATGGTGTTAGAGTTTATGA+TGG | - | chr6_3:15364029-15364048 | None:intergenic | 30.0% |
| !!! | TTCCGGTCTGTAATTTTTTT+GGG | + | chr6_3:15364073-15364092 | Msa0941540:intron | 30.0% |
| !! | ATGTTGTTTCAAAGCCAATT+GGG | + | chr6_3:15364120-15364139 | Msa0941540:intron | 30.0% |
| ! | TGGTTATGTACTAGACATTT+TGG | + | chr6_3:15364324-15364343 | Msa0941540:intron | 30.0% |
| GCCACATTAAATACTACAAA+AGG | - | chr6_3:15364399-15364418 | None:intergenic | 30.0% | |
| TTGCATCACATCACATTATT+TGG | + | chr6_3:15364485-15364504 | Msa0941540:intron | 30.0% | |
| TGCATCACATCACATTATTT+GGG | + | chr6_3:15364486-15364505 | Msa0941540:intron | 30.0% | |
| TTCATTTCTAATCCATCACA+TGG | - | chr6_3:15364624-15364643 | None:intergenic | 30.0% | |
| !! | TGATGGATTAGAAATGAAAG+AGG | + | chr6_3:15364626-15364645 | Msa0941540:CDS | 30.0% |
| ACTCATATAACTTCAAGAAC+AGG | - | chr6_3:15364684-15364703 | None:intergenic | 30.0% | |
| TTATTAGTGATGTCTATGTG+TGG | - | chr6_3:15365071-15365090 | None:intergenic | 30.0% | |
| TCTTATGAGGTAAACTCAAA+AGG | + | chr6_3:15365249-15365268 | Msa0941540:CDS | 30.0% | |
| CTTATGAGGTAAACTCAAAA+GGG | + | chr6_3:15365250-15365269 | Msa0941540:CDS | 30.0% | |
| !! | TTGAGATCTTTTGGAAAAGT+TGG | + | chr6_3:15365274-15365293 | Msa0941540:CDS | 30.0% |
| ! | GTATTTTTCTGTCATGGATA+TGG | + | chr6_3:15365327-15365346 | Msa0941540:CDS | 30.0% |
| !!! | ACTTGCACTTTTTTCTTTGA+AGG | + | chr6_3:15365354-15365373 | Msa0941540:CDS | 30.0% |
| AACTCAATCATGTGTTACAT+TGG | + | chr6_3:15365581-15365600 | Msa0941540:intron | 30.0% | |
| !! | AACCTAAGTACCTTTGATTT+TGG | - | chr6_3:15365754-15365773 | None:intergenic | 30.0% |
| !! | AAAGGTACTTAGGTTCTATT+TGG | + | chr6_3:15365759-15365778 | Msa0941540:intron | 30.0% |
| TGAAAACAGCTCATAATCTT+AGG | + | chr6_3:15365936-15365955 | Msa0941540:intron | 30.0% | |
| !! | TACTAAGGTATTGATGCAAA+AGG | + | chr6_3:15366054-15366073 | Msa0941540:intron | 30.0% |
| !! | CTTTCTTTTTGGAGAATCTA+TGG | + | chr6_3:15366126-15366145 | Msa0941540:CDS | 30.0% |
| !! | ATTTTAACAACCAACTTTGG+TGG | - | chr6_3:15366333-15366352 | None:intergenic | 30.0% |
| !! | AGCATTTTAACAACCAACTT+TGG | - | chr6_3:15366336-15366355 | None:intergenic | 30.0% |
| GAAAGAAAATTAGCGCAAAA+AGG | - | chr6_3:15366469-15366488 | None:intergenic | 30.0% | |
| CGAAGAAATCGAACAAAAAT+TGG | + | chr6_3:15366641-15366660 | Msa0941540:CDS | 30.0% | |
| AAAAGTCTATCTTCACGTTA+AGG | + | chr6_3:15366749-15366768 | Msa0941540:intron | 30.0% | |
| TATAGACAAAGCAGTATAAG+AGG | - | chr6_3:15366798-15366817 | None:intergenic | 30.0% | |
| CTACCATTATTCATTCTTCA+TGG | + | chr6_3:15366929-15366948 | Msa0941540:CDS | 30.0% | |
| TCTCCATGAAGAATGAATAA+TGG | - | chr6_3:15366935-15366954 | None:intergenic | 30.0% | |
| GCCAAAAAAAAACAAGAAGG+TGG | - | chr6_3:15362981-15363000 | None:intergenic | 35.0% | |
| !! | GCTTTTAAGGATATTCAGCT+TGG | + | chr6_3:15363296-15363315 | Msa0941540:CDS | 35.0% |
| TATCAACAACATCGCCAATT+TGG | - | chr6_3:15363547-15363566 | None:intergenic | 35.0% | |
| CGATGTTGTTGATATAACCT+TGG | + | chr6_3:15363553-15363572 | Msa0941540:intron | 35.0% | |
| CTAGTATCTGACACATATTG+CGG | + | chr6_3:15363609-15363628 | Msa0941540:intron | 35.0% | |
| CACATATATCGAACACAACA+CGG | - | chr6_3:15363706-15363725 | None:intergenic | 35.0% | |
| ! | TGTGTCTGTGTCATAGTTTT+AGG | + | chr6_3:15363722-15363741 | Msa0941540:intron | 35.0% |
| !!! | GTGTCATAGTTTTAGGTTTG+AGG | + | chr6_3:15363729-15363748 | Msa0941540:intron | 35.0% |
| !! | AGGTTTGAGGTTTTAGTACA+AGG | + | chr6_3:15363742-15363761 | Msa0941540:intron | 35.0% |
| !! | GGTTTTAGTACAAGGTTGTT+TGG | + | chr6_3:15363750-15363769 | Msa0941540:intron | 35.0% |
| ! | ACTTTCATATTGGTAGTTGG+TGG | + | chr6_3:15363823-15363842 | Msa0941540:intron | 35.0% |
| TTGAAACTTGAAAGAGAGAG+AGG | + | chr6_3:15363870-15363889 | Msa0941540:intron | 35.0% | |
| TGTAACAATCGAGGAGAATA+TGG | - | chr6_3:15364047-15364066 | None:intergenic | 35.0% | |
| GAACTGTAATGTAACAATCG+AGG | - | chr6_3:15364056-15364075 | None:intergenic | 35.0% | |
| CGATTGTTACATTACAGTTC+CGG | + | chr6_3:15364056-15364075 | Msa0941540:intron | 35.0% | |
| !!! | GTTCCGGTCTGTAATTTTTT+TGG | + | chr6_3:15364072-15364091 | Msa0941540:intron | 35.0% |
| GTCCCAAAAAAATTACAGAC+CGG | - | chr6_3:15364078-15364097 | None:intergenic | 35.0% | |
| GGACTATAATGTAACGATTG+AGG | + | chr6_3:15364094-15364113 | Msa0941540:intron | 35.0% | |
| CTATAATGTAACGATTGAGG+AGG | + | chr6_3:15364097-15364116 | Msa0941540:intron | 35.0% | |
| !! | GATGTTGTTTCAAAGCCAAT+TGG | + | chr6_3:15364119-15364138 | Msa0941540:intron | 35.0% |
| TCACATCACATTATTTGGGA+AGG | + | chr6_3:15364490-15364509 | Msa0941540:intron | 35.0% | |
| CACATCACATTATTTGGGAA+GGG | + | chr6_3:15364491-15364510 | Msa0941540:intron | 35.0% | |
| TCCTAGTAAATATCAACGAG+GGG | - | chr6_3:15364779-15364798 | None:intergenic | 35.0% | |
| GTCCTAGTAAATATCAACGA+GGG | - | chr6_3:15364780-15364799 | None:intergenic | 35.0% | |
| AGTCCTAGTAAATATCAACG+AGG | - | chr6_3:15364781-15364800 | None:intergenic | 35.0% | |
| GGACTATAATGACGTTAAGT+TGG | + | chr6_3:15364796-15364815 | Msa0941540:intron | 35.0% | |
| TGTTCGCAGATGAACTTAAT+AGG | + | chr6_3:15364854-15364873 | Msa0941540:intron | 35.0% | |
| ! | TGCTATGAAACAGTCTTATG+AGG | + | chr6_3:15365236-15365255 | Msa0941540:intron | 35.0% |
| ! | CAAAAGGGATTGAGATCTTT+TGG | + | chr6_3:15365265-15365284 | Msa0941540:CDS | 35.0% |
| !!! | CAGAAAAATACTGCTGCTTT+TGG | - | chr6_3:15365318-15365337 | None:intergenic | 35.0% |
| ! | TTTCTTTGAAGGCATGTAAC+TGG | + | chr6_3:15365365-15365384 | Msa0941540:intron | 35.0% |
| TAGCTATAAGCTATGAAGCA+TGG | + | chr6_3:15365404-15365423 | Msa0941540:intron | 35.0% | |
| TAAGCTATGAAGCATGGATA+CGG | + | chr6_3:15365410-15365429 | Msa0941540:intron | 35.0% | |
| TACTTATAGCCTATGAAGCA+CGG | - | chr6_3:15365533-15365552 | None:intergenic | 35.0% | |
| GTTACATTGGAAACATTTGC+AGG | + | chr6_3:15365594-15365613 | Msa0941540:intron | 35.0% | |
| !! | GTTTTTGCTATGGATTATCC+AGG | + | chr6_3:15365651-15365670 | Msa0941540:CDS | 35.0% |
| TCAACAAGCTGATCAAAACT+TGG | - | chr6_3:15365711-15365730 | None:intergenic | 35.0% | |
| GAACAGTACTCCAAAATCAA+AGG | + | chr6_3:15365741-15365760 | Msa0941540:CDS | 35.0% | |
| !! | CTCCAAAATCAAAGGTACTT+AGG | + | chr6_3:15365749-15365768 | Msa0941540:intron | 35.0% |
| AAACAGCTCATAATCTTAGG+CGG | + | chr6_3:15365939-15365958 | Msa0941540:intron | 35.0% | |
| ! | ATTTTACAACAGTCTTCGAG+GGG | - | chr6_3:15365977-15365996 | None:intergenic | 35.0% |
| ! | CATTTTACAACAGTCTTCGA+GGG | - | chr6_3:15365978-15365997 | None:intergenic | 35.0% |
| ! | ACATTTTACAACAGTCTTCG+AGG | - | chr6_3:15365979-15365998 | None:intergenic | 35.0% |
| !! | AGGTATTGATGCAAAAGGTT+TGG | + | chr6_3:15366059-15366078 | Msa0941540:intron | 35.0% |
| ! | TCTCTTCCATGCTTTCTTTT+TGG | + | chr6_3:15366115-15366134 | Msa0941540:CDS | 35.0% |
| GATTCTCCAAAAAGAAAGCA+TGG | - | chr6_3:15366124-15366143 | None:intergenic | 35.0% | |
| ACTTGAAACAACCTAAAGCA+TGG | + | chr6_3:15366173-15366192 | Msa0941540:CDS | 35.0% | |
| AAACAACCTAAAGCATGGAA+TGG | + | chr6_3:15366178-15366197 | Msa0941540:CDS | 35.0% | |
| ! | CATTTTCTCAAACTCAGTCA+TGG | + | chr6_3:15366232-15366251 | Msa0941540:intron | 35.0% |
| TGAAATCTACACAAAGTTGC+AGG | - | chr6_3:15366298-15366317 | None:intergenic | 35.0% | |
| TGTGTAGATTTCAGAGCAAA+TGG | + | chr6_3:15366305-15366324 | Msa0941540:intron | 35.0% | |
| CTTATTCTTCGGAAGAACAT+TGG | - | chr6_3:15366370-15366389 | None:intergenic | 35.0% | |
| TGTTCTTCCGAAGAATAAGA+TGG | + | chr6_3:15366371-15366390 | Msa0941540:CDS | 35.0% | |
| ATTCAAAGATCCGAAGAAGA+GGG | + | chr6_3:15366422-15366441 | Msa0941540:CDS | 35.0% | |
| AGAAAATTAGCGCAAAAAGG+AGG | - | chr6_3:15366466-15366485 | None:intergenic | 35.0% | |
| ACATAATACGTCGATAATGC+AGG | - | chr6_3:15366830-15366849 | None:intergenic | 35.0% | |
| ! | TTCTTGGTGACATCATTTCT+TGG | + | chr6_3:15367092-15367111 | Msa0941540:CDS | 35.0% |
| TGGAATCTATGAAGCTTCGT+AGG | - | chr6_3:15362961-15362980 | None:intergenic | 40.0% | |
| AGAGAGAGAGAAAGATGAAG+AGG | + | chr6_3:15363192-15363211 | Msa0941540:exon | 40.0% | |
| AGAAAGATGAAGAGGTTACC+AGG | + | chr6_3:15363200-15363219 | Msa0941540:exon | 40.0% | |
| GAAAGATGAAGAGGTTACCA+GGG | + | chr6_3:15363201-15363220 | Msa0941540:exon | 40.0% | |
| AAAGATGAAGAGGTTACCAG+GGG | + | chr6_3:15363202-15363221 | Msa0941540:exon | 40.0% | |
| CTGGGAAGATTGCATTTAGT+TGG | + | chr6_3:15363503-15363522 | Msa0941540:intron | 40.0% | |
| TCCCTTGATATGGTTACGTA+GGG | + | chr6_3:15363781-15363800 | Msa0941540:intron | 40.0% | |
| ACCCTACGTAACCATATCAA+GGG | - | chr6_3:15363785-15363804 | None:intergenic | 40.0% | |
| TGGTACTTCTTACTCCTAAG+AGG | + | chr6_3:15363843-15363862 | Msa0941540:intron | 40.0% | |
| GGTACTTCTTACTCCTAAGA+GGG | + | chr6_3:15363844-15363863 | Msa0941540:intron | 40.0% | |
| CAAGTTTCAACTACCCTCTT+AGG | - | chr6_3:15363860-15363879 | None:intergenic | 40.0% | |
| TGTTTCAAAGCCAATTGGGT+CGG | + | chr6_3:15364124-15364143 | Msa0941540:intron | 40.0% | |
| ! | TGTATTGATACCGACCCAAT+TGG | - | chr6_3:15364137-15364156 | None:intergenic | 40.0% |
| CACATTATTTGGGAAGGGAA+TGG | + | chr6_3:15364496-15364515 | Msa0941540:intron | 40.0% | |
| AACTTAATAGGTCCAGACAC+AGG | + | chr6_3:15364866-15364885 | Msa0941540:intron | 40.0% | |
| ACTTAATAGGTCCAGACACA+GGG | + | chr6_3:15364867-15364886 | Msa0941540:intron | 40.0% | |
| ! | TTGGAAAAGTTGGCTTCCTA+AGG | + | chr6_3:15365284-15365303 | Msa0941540:CDS | 40.0% |
| !!! | GCTTTTGGCTTAGATTCCTT+AGG | - | chr6_3:15365303-15365322 | None:intergenic | 40.0% |
| ! | GCAGCAGTATTTTTCTGTCA+TGG | + | chr6_3:15365321-15365340 | Msa0941540:CDS | 40.0% |
| TTATTAGCAGTGTCTGTGTC+CGG | - | chr6_3:15365445-15365464 | None:intergenic | 40.0% | |
| GCTAGAAAACTTGCATCATG+CGG | + | chr6_3:15365621-15365640 | Msa0941540:CDS | 40.0% | |
| AAACTTGCATCATGCGGATA+TGG | + | chr6_3:15365627-15365646 | Msa0941540:CDS | 40.0% | |
| ! | CGGATATGGAGTTTTTGCTA+TGG | + | chr6_3:15365641-15365660 | Msa0941540:CDS | 40.0% |
| ! | GCTATGGATTATCCAGGATT+TGG | + | chr6_3:15365657-15365676 | Msa0941540:CDS | 40.0% |
| ! | AAGCTAGTCTGATGCACTTA+TGG | + | chr6_3:15365906-15365925 | Msa0941540:intron | 40.0% |
| CATGGAAGAGAATTGAACTC+TGG | - | chr6_3:15366106-15366125 | None:intergenic | 40.0% | |
| !! | CTTTTTGGAGAATCTATGGG+TGG | + | chr6_3:15366130-15366149 | Msa0941540:CDS | 40.0% |
| CATTCAAAGATCCGAAGAAG+AGG | + | chr6_3:15366421-15366440 | Msa0941540:CDS | 40.0% | |
| ACGTTAAGGCGACACTTAAA+AGG | + | chr6_3:15366763-15366782 | Msa0941540:intron | 40.0% | |
| CGTTAAGGCGACACTTAAAA+GGG | + | chr6_3:15366764-15366783 | Msa0941540:intron | 40.0% | |
| TACAATGCTTTGCTCACTGA+TGG | - | chr6_3:15366977-15366996 | None:intergenic | 40.0% | |
| ATCAGACTCACCCTCAATTA+GGG | - | chr6_3:15367056-15367075 | None:intergenic | 40.0% | |
| TGCAATTCATCATCAACCCC+TGG | - | chr6_3:15363221-15363240 | None:intergenic | 45.0% | |
| ! | ACAAGCTCGTGAGGCTTTTA+AGG | + | chr6_3:15363283-15363302 | Msa0941540:CDS | 45.0% |
| GGAGATCATGTCCCTTGATA+TGG | + | chr6_3:15363771-15363790 | Msa0941540:intron | 45.0% | |
| GTCCCTTGATATGGTTACGT+AGG | + | chr6_3:15363780-15363799 | Msa0941540:intron | 45.0% | |
| CACCCTACGTAACCATATCA+AGG | - | chr6_3:15363786-15363805 | None:intergenic | 45.0% | |
| CTTGATATGGTTACGTAGGG+TGG | + | chr6_3:15363784-15363803 | Msa0941540:intron | 45.0% | |
| ! | GTTTTGCAGACTCCATGTGA+TGG | + | chr6_3:15364609-15364628 | Msa0941540:intron | 45.0% |
| GCCCCTCGTTGATATTTACT+AGG | + | chr6_3:15364775-15364794 | Msa0941540:intron | 45.0% | |
| ACTTCAGACTGAACACGTCT+CGG | - | chr6_3:15365137-15365156 | None:intergenic | 45.0% | |
| ! | ACGTGTTCAGTCTGAAGTGT+CGG | + | chr6_3:15365139-15365158 | Msa0941540:intron | 45.0% |
| !! | CGGTGCTACATAGTTCATCA+AGG | + | chr6_3:15365159-15365178 | Msa0941540:intron | 45.0% |
| ! | CCTTCTGAAAGACCAAATCC+TGG | - | chr6_3:15365672-15365691 | None:intergenic | 45.0% |
| ! | CCAGGATTTGGTCTTTCAGA+AGG | + | chr6_3:15365669-15365688 | Msa0941540:CDS | 45.0% |
| GGTCTTTCAGAAGGTCTTCA+TGG | + | chr6_3:15365678-15365697 | Msa0941540:CDS | 45.0% | |
| ATCGCACCATTCCATGCTTT+AGG | - | chr6_3:15366187-15366206 | None:intergenic | 45.0% | |
| GCAAATGGTTCCACCAAAGT+TGG | + | chr6_3:15366320-15366339 | Msa0941540:CDS | 45.0% | |
| GTCGGGACCATCTTATTCTT+CGG | - | chr6_3:15366381-15366400 | None:intergenic | 45.0% | |
| CATCTCCTATATCCTGTGTC+GGG | - | chr6_3:15366398-15366417 | None:intergenic | 45.0% | |
| GCATCTCCTATATCCTGTGT+CGG | - | chr6_3:15366399-15366418 | None:intergenic | 45.0% | |
| CAAACCTGTTCCCTCTTCTT+CGG | - | chr6_3:15366435-15366454 | None:intergenic | 45.0% | |
| TGCTCAACATGCCCTAATTG+AGG | + | chr6_3:15367042-15367061 | Msa0941540:CDS | 45.0% | |
| GCTCAACATGCCCTAATTGA+GGG | + | chr6_3:15367043-15367062 | Msa0941540:CDS | 45.0% | |
| CATCAGACTCACCCTCAATT+AGG | - | chr6_3:15367057-15367076 | None:intergenic | 45.0% | |
| !! | ATTCAATAAAAAATAAAAAA+GGG | - | chr6_3:15363426-15363445 | None:intergenic | 5.0% |
| !! | AATTCAATAAAAAATAAAAA+AGG | - | chr6_3:15363427-15363446 | None:intergenic | 5.0% |
| !!! | ATTTTGAAATATTTATAAAA+TGG | - | chr6_3:15364722-15364741 | None:intergenic | 5.0% |
| !! | ATATTATATATTAATAACAA+AGG | - | chr6_3:15365200-15365219 | None:intergenic | 5.0% |
| TCACGAGCTTGTCTTCTAGC+AGG | - | chr6_3:15363275-15363294 | None:intergenic | 50.0% | |
| TGCTAGAAGACAAGCTCGTG+AGG | + | chr6_3:15363274-15363293 | Msa0941540:CDS | 50.0% | |
| ATCAAGTTCGTCCCTGTGTC+TGG | - | chr6_3:15364881-15364900 | None:intergenic | 50.0% | |
| ATGGATACGGATGCAGACAC+CGG | + | chr6_3:15365423-15365442 | Msa0941540:intron | 50.0% | |
| GCACGGACACTCATCGAATT+AGG | - | chr6_3:15365516-15365535 | None:intergenic | 50.0% | |
| GATGAGTGTCCGTGCTTCAT+AGG | + | chr6_3:15365521-15365540 | Msa0941540:intron | 50.0% | |
| GAATAAGATGGTCCCGACAC+AGG | + | chr6_3:15366383-15366402 | Msa0941540:CDS | 50.0% | |
| ATGGTCCCGACACAGGATAT+AGG | + | chr6_3:15366390-15366409 | Msa0941540:CDS | 50.0% | |
| AGATCCGAAGAAGAGGGAAC+AGG | + | chr6_3:15366428-15366447 | Msa0941540:CDS | 50.0% | |
| ACAAGGATAAACCACGCCTG+CGG | + | chr6_3:15366592-15366611 | Msa0941540:CDS | 50.0% | |
| ACGTCTCGGTCTGACACATG+TGG | - | chr6_3:15365123-15365142 | None:intergenic | 55.0% | |
| GCAGTTCTACAGCAGTCCGC+AGG | - | chr6_3:15366611-15366630 | None:intergenic | 60.0% | |
| TCTACAGCAGTCCGCAGGCG+TGG | - | chr6_3:15366606-15366625 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 15362923 | 15367290 | 15362923 | ID=Msa0941540;Name=Msa0941540 |
| chr6_3 | mRNA | 15362923 | 15367290 | 15362923 | ID=Msa0941540-mRNA-1;Parent=Msa0941540;Name=Msa0941540-mRNA-1;_AED=0.10;_eAED=0.10;_QI=283|1|1|1|1|1|8|134|346 |
| chr6_3 | exon | 15362923 | 15363340 | 15362923 | ID=Msa0941540-mRNA-1:exon:4680;Parent=Msa0941540-mRNA-1 |
| chr6_3 | exon | 15364618 | 15364647 | 15364618 | ID=Msa0941540-mRNA-1:exon:4681;Parent=Msa0941540-mRNA-1 |
| chr6_3 | exon | 15365249 | 15365375 | 15365249 | ID=Msa0941540-mRNA-1:exon:4682;Parent=Msa0941540-mRNA-1 |
| chr6_3 | exon | 15365616 | 15365762 | 15365616 | ID=Msa0941540-mRNA-1:exon:4683;Parent=Msa0941540-mRNA-1 |
| chr6_3 | exon | 15366098 | 15366228 | 15366098 | ID=Msa0941540-mRNA-1:exon:4684;Parent=Msa0941540-mRNA-1 |
| chr6_3 | exon | 15366312 | 15366449 | 15366312 | ID=Msa0941540-mRNA-1:exon:4685;Parent=Msa0941540-mRNA-1 |
| chr6_3 | exon | 15366570 | 15366668 | 15366570 | ID=Msa0941540-mRNA-1:exon:4686;Parent=Msa0941540-mRNA-1 |
| chr6_3 | exon | 15366923 | 15367290 | 15366923 | ID=Msa0941540-mRNA-1:exon:4687;Parent=Msa0941540-mRNA-1 |
| chr6_3 | five_prime_UTR | 15362923 | 15363205 | 15362923 | ID=Msa0941540-mRNA-1:five_prime_utr;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15363206 | 15363340 | 15363206 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15364618 | 15364647 | 15364618 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15365249 | 15365375 | 15365249 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15365616 | 15365762 | 15365616 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15366098 | 15366228 | 15366098 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15366312 | 15366449 | 15366312 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15366570 | 15366668 | 15366570 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | CDS | 15366923 | 15367156 | 15366923 | ID=Msa0941540-mRNA-1:cds;Parent=Msa0941540-mRNA-1 |
| chr6_3 | three_prime_UTR | 15367157 | 15367290 | 15367157 | ID=Msa0941540-mRNA-1:three_prime_utr;Parent=Msa0941540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
