Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021090 | XP_013454617.1 | 97.222 | 288 | 3 | 2 | 1 | 286 | 1 | 285 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021090 | sp|Q8LAS8|SFGH_ARATH | 78.947 | 285 | 57 | 2 | 1 | 285 | 1 | 282 | 4.23e-170 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021090 | Msa0031510 | -0.803031 | 4.232746e-49 | -8.615850e-47 |
| Msa0021090 | Msa0126520 | -0.827799 | 1.281279e-54 | -8.615850e-47 |
| Msa0021090 | Msa0131450 | -0.810228 | 1.279696e-50 | -8.615850e-47 |
| Msa0021090 | Msa0227310 | 0.824901 | 6.278291e-54 | -8.615850e-47 |
| Msa0021090 | Msa0291520 | -0.802761 | 4.811197e-49 | -8.615850e-47 |
| Msa0021090 | Msa0370160 | 0.801443 | 8.983441e-49 | -8.615850e-47 |
| Msa0021090 | Msa0419520 | -0.822726 | 2.029872e-53 | -8.615850e-47 |
| Msa0021090 | Msa0439890 | -0.830074 | 3.603720e-55 | -8.615850e-47 |
| Msa0021090 | Msa0550570 | -0.810164 | 1.320577e-50 | -8.615850e-47 |
| Msa0021090 | Msa0556790 | -0.810888 | 9.215548e-51 | -8.615850e-47 |
| Msa0021090 | Msa0565620 | 0.807613 | 4.640520e-50 | -8.615850e-47 |
| Msa0021090 | Msa0618930 | -0.813141 | 2.974460e-51 | -8.615850e-47 |
| Msa0021090 | Msa0694840 | -0.808372 | 3.198543e-50 | -8.615850e-47 |
| Msa0021090 | Msa0706390 | -0.818197 | 2.222131e-52 | -8.615850e-47 |
| Msa0021090 | Msa0720370 | -0.803418 | 3.519911e-49 | -8.615850e-47 |
| Msa0021090 | Msa0921870 | -0.800836 | 1.195649e-48 | -8.615850e-47 |
| Msa0021090 | Msa1070050 | -0.815522 | 8.854224e-52 | -8.615850e-47 |
| Msa0021090 | Msa1089740 | 0.802458 | 5.557220e-49 | -8.615850e-47 |
| Msa0021090 | Msa1135800 | 0.827575 | 1.450162e-54 | -8.615850e-47 |
| Msa0021090 | Msa1135810 | 0.845834 | 3.172065e-59 | -8.615850e-47 |
| Msa0021090 | Msa1193950 | 0.804206 | 2.414026e-49 | -8.615850e-47 |
| Msa0021090 | Msa1344850 | -0.811036 | 8.559875e-51 | -8.615850e-47 |
| Msa0021090 | Msa1418960 | 0.806230 | 9.099321e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021090 | MtrunA17_Chr1g0173101 | 97.222 | 288 | 3 | 2 | 1 | 286 | 1 | 285 | 0.0 | 578 |
| Msa0021090 | MtrunA17_Chr1g0172851 | 91.930 | 285 | 20 | 1 | 1 | 285 | 1 | 282 | 0.0 | 545 |
| Msa0021090 | MtrunA17_Chr1g0172821 | 87.500 | 112 | 14 | 0 | 174 | 285 | 5 | 116 | 4.06e-69 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021090 | AT2G41530.1 | 78.947 | 285 | 57 | 2 | 1 | 285 | 1 | 282 | 4.30e-171 | 474 |
Find 76 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATATTTGGCCATTCTA+TGG | 0.170286 | 1_1:+37276303 | Msa0021090:CDS |
| ACATCAAAAGCTTCTATATT+TGG | 0.201933 | 1_1:+37276292 | Msa0021090:CDS |
| TCCTTTCTCTCCGGTGTCTT+TGG | 0.239487 | 1_1:-37273588 | None:intergenic |
| GTTGTTAGAATCAGAAGAAT+TGG | 0.290116 | 1_1:-37273734 | None:intergenic |
| CGCAAGAGAAATGGAAGAAT+TGG | 0.320263 | 1_1:+37276203 | Msa0021090:CDS |
| GAAGCTGATTCCTGGGACTT+TGG | 0.333888 | 1_1:+37274010 | Msa0021090:CDS |
| ACATCCGACATCATGCTCTT+AGG | 0.365033 | 1_1:+37278171 | Msa0021090:CDS |
| TGTCCCCAAGGACAATTTGT+AGG | 0.384046 | 1_1:-37277529 | None:intergenic |
| AATCATTCCCTGTTCTGTAT+TGG | 0.394716 | 1_1:+37273761 | Msa0021090:CDS |
| CACTTGGTAACAAAGTTTCC+TGG | 0.398459 | 1_1:+37277701 | Msa0021090:CDS |
| CCGGAGAGCCAATACAGAAC+AGG | 0.399855 | 1_1:-37273769 | None:intergenic |
| AAGTTATCACTTAGAAGCTT+TGG | 0.400000 | 1_1:-37276256 | None:intergenic |
| TTGTTAGAATCAGAAGAATT+GGG | 0.418202 | 1_1:-37273733 | None:intergenic |
| ACCAAAGACACCGGAGAGAA+AGG | 0.422095 | 1_1:+37273587 | Msa0021090:five_prime_UTR |
| TTGAAGGTGAAGCTGATTCC+TGG | 0.423587 | 1_1:+37274002 | Msa0021090:CDS |
| GAGAATTTCATCTTCAAATC+CGG | 0.426723 | 1_1:+37273808 | Msa0021090:CDS |
| CAAATCCTACAAATTGTCCT+TGG | 0.427778 | 1_1:+37277524 | Msa0021090:CDS |
| CCTGTTCTGTATTGGCTCTC+CGG | 0.429739 | 1_1:+37273769 | Msa0021090:CDS |
| CCATCTTCTTCCTTTCTCTC+CGG | 0.431118 | 1_1:-37273597 | None:intergenic |
| TCAATGCTACGCAAGAGAAA+TGG | 0.435735 | 1_1:+37276194 | Msa0021090:CDS |
| AAATTACTTGGAGAGGTGTC+GGG | 0.436401 | 1_1:-37273874 | None:intergenic |
| TCTATATTTGGCCATTCTAT+GGG | 0.441526 | 1_1:+37276304 | Msa0021090:CDS |
| AAATCCTACAAATTGTCCTT+GGG | 0.449459 | 1_1:+37277525 | Msa0021090:CDS |
| CGCCATGCCCACCCATAGAA+TGG | 0.459123 | 1_1:-37276315 | None:intergenic |
| AAGGCATTCACAAATTATCT+AGG | 0.465171 | 1_1:+37277553 | Msa0021090:CDS |
| CACGCCTCTTCAAACTTGCC+AGG | 0.481413 | 1_1:-37278062 | None:intergenic |
| TTGAGTAGTGGGAAGATGTT+CGG | 0.481544 | 1_1:+37273640 | Msa0021090:CDS |
| TACCTGATCAATCAAAATGC+TGG | 0.484847 | 1_1:-37277732 | None:intergenic |
| ACAGGAGGTTTGAATGTTGA+AGG | 0.484961 | 1_1:+37273986 | Msa0021090:intron |
| CTCATCGGTGCAAGTGAGGC+CGG | 0.489451 | 1_1:-37273788 | None:intergenic |
| CTGCATGATCAACTGCTACC+TGG | 0.496627 | 1_1:+37278044 | Msa0021090:CDS |
| TAGGTGACAATAAATCTGAA+TGG | 0.496854 | 1_1:+37277572 | Msa0021090:CDS |
| AGGTGACAATAAATCTGAAT+GGG | 0.500234 | 1_1:+37277573 | Msa0021090:CDS |
| GGCCATTCTATGGGTGGGCA+TGG | 0.500735 | 1_1:+37276313 | Msa0021090:CDS |
| AAAATTACTTGGAGAGGTGT+CGG | 0.502239 | 1_1:-37273875 | None:intergenic |
| ATATTTGGCCATTCTATGGG+TGG | 0.506668 | 1_1:+37276307 | Msa0021090:CDS |
| GATTCCTGGGACTTTGGTGT+TGG | 0.506807 | 1_1:+37274016 | Msa0021090:CDS |
| GATGGCAGGAGGAGCAGTGA+CGG | 0.511143 | 1_1:+37273615 | Msa0021090:exon |
| CAACGTGCCGCTTCTGAACA+CGG | 0.521728 | 1_1:+37273835 | Msa0021090:CDS |
| CTGCTGTTACGCTTTCAACC+TGG | 0.525229 | 1_1:+37278104 | Msa0021090:CDS |
| GTCAGTTTCTGCCTTTGCAC+CGG | 0.528564 | 1_1:+37277498 | Msa0021090:intron |
| AGAGAAAGGAAGAAGATGGC+AGG | 0.538772 | 1_1:+37273601 | Msa0021090:exon |
| CAGTGACGGAGTTGAGTAGT+GGG | 0.540988 | 1_1:+37273629 | Msa0021090:CDS |
| TATAATAAAATTACTTGGAG+AGG | 0.542317 | 1_1:-37273881 | None:intergenic |
| AGAAGCGGCACGTTGAGCAC+CGG | 0.544846 | 1_1:-37273827 | None:intergenic |
| TATTTGGCCATTCTATGGGT+GGG | 0.545716 | 1_1:+37276308 | Msa0021090:CDS |
| AAATTGTCCTTGGGGACAGA+AGG | 0.550742 | 1_1:+37277534 | Msa0021090:CDS |
| CCGGAGAGAAAGGAAGAAGA+TGG | 0.556488 | 1_1:+37273597 | Msa0021090:exon |
| GAAAGTTCATTGAACAGCCA+AGG | 0.579280 | 1_1:-37273699 | None:intergenic |
| CAATTTGTAGGATTTGCTAC+CGG | 0.579558 | 1_1:-37277517 | None:intergenic |
| CATACCAACACCAAAGTCCC+AGG | 0.579891 | 1_1:-37274020 | None:intergenic |
| AGGATTTGCTACCGGTGCAA+AGG | 0.582379 | 1_1:-37277509 | None:intergenic |
| GCAGTGACGGAGTTGAGTAG+TGG | 0.583465 | 1_1:+37273628 | Msa0021090:CDS |
| AAACATTACAGTAATACCCT+TGG | 0.586022 | 1_1:+37273682 | Msa0021090:CDS |
| GTGAATGCCTTCTGTCCCCA+AGG | 0.586360 | 1_1:-37277541 | None:intergenic |
| CGGAGAGCCAATACAGAACA+GGG | 0.587832 | 1_1:-37273768 | None:intergenic |
| AATTACTTGGAGAGGTGTCG+GGG | 0.591435 | 1_1:-37273873 | None:intergenic |
| CATGTATGACTATGTTGTCA+AGG | 0.598628 | 1_1:+37276228 | Msa0021090:CDS |
| GGCAACACCGTGTTCAGAAG+CGG | 0.598775 | 1_1:-37273842 | None:intergenic |
| TTTGAAGATGAAATTCTCAT+CGG | 0.604223 | 1_1:-37273803 | None:intergenic |
| GGATTACGATGCTACTCACT+TGG | 0.610375 | 1_1:+37277685 | Msa0021090:intron |
| TGAAGGTGAAGCTGATTCCT+GGG | 0.610524 | 1_1:+37274003 | Msa0021090:CDS |
| GAAAGGAAGAAGATGGCAGG+AGG | 0.620972 | 1_1:+37273604 | Msa0021090:exon |
| GGTTGAAAGCGTAACAGCAG+TGG | 0.625554 | 1_1:-37278101 | None:intergenic |
| AAAGTTCATTGAACAGCCAA+GGG | 0.625939 | 1_1:-37273698 | None:intergenic |
| TGACAATAAATCTGAATGGG+AGG | 0.634434 | 1_1:+37277576 | Msa0021090:CDS |
| GCTACCTGGCAAGTTTGAAG+AGG | 0.636640 | 1_1:+37278058 | Msa0021090:CDS |
| CAGCGGCAAACCAAAGACAC+CGG | 0.647009 | 1_1:+37273578 | Msa0021090:five_prime_UTR |
| AATTCTCATCGGTGCAAGTG+AGG | 0.649677 | 1_1:-37273792 | None:intergenic |
| TAATAAGAGTGATCATAACC+AGG | 0.652139 | 1_1:-37278122 | None:intergenic |
| TAAGCCTAAGAGCATGATGT+CGG | 0.652171 | 1_1:-37278175 | None:intergenic |
| AGTAGTGGGAAGATGTTCGG+AGG | 0.665318 | 1_1:+37273643 | Msa0021090:CDS |
| AATCCTACAAATTGTCCTTG+GGG | 0.667510 | 1_1:+37277526 | Msa0021090:CDS |
| ATTACTTGGAGAGGTGTCGG+GGG | 0.681882 | 1_1:-37273872 | None:intergenic |
| AAAATGCTGGCAGATACACC+AGG | 0.688348 | 1_1:-37277719 | None:intergenic |
| TTTCAATAGAGATCATGCAG+CGG | 0.711848 | 1_1:+37273561 | Msa0021090:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATATAATAAAATTACT+TGG | - | chr1_1:37273889-37273908 | None:intergenic | 10.0% |
| !!! | TTTTAAGTTAAAAATCAATT+TGG | + | chr1_1:37274169-37274188 | Msa0021090:intron | 10.0% |
| !!! | TTTAAGTTAAAAATCAATTT+GGG | + | chr1_1:37274170-37274189 | Msa0021090:intron | 10.0% |
| !! | TTTATCTTGTAAATTATAAT+TGG | - | chr1_1:37274546-37274565 | None:intergenic | 10.0% |
| !!! | ATTTTAAGAGAAAAAAAAAA+TGG | + | chr1_1:37274591-37274610 | Msa0021090:intron | 10.0% |
| !!! | AGTAGATACTTTAAAAAAAT+AGG | - | chr1_1:37275585-37275604 | None:intergenic | 15.0% |
| !!! | AATTAAGATATCTTTTGTAA+AGG | - | chr1_1:37276133-37276152 | None:intergenic | 15.0% |
| !! | TTGCATATTTATTTAATCTA+CGG | + | chr1_1:37276151-37276170 | Msa0021090:intron | 15.0% |
| !!! | TCATTAATCTATTTTACATT+TGG | + | chr1_1:37276560-37276579 | Msa0021090:intron | 15.0% |
| !!! | ATTATATGTATTTTTCACAT+GGG | + | chr1_1:37276605-37276624 | Msa0021090:intron | 15.0% |
| !! | TAATTTACAACAATCATAAA+CGG | - | chr1_1:37277336-37277355 | None:intergenic | 15.0% |
| !! | TATAATAAAATTACTTGGAG+AGG | - | chr1_1:37273884-37273903 | None:intergenic | 20.0% |
| !!! | AAATACTATTTGAAACGAAA+AGG | - | chr1_1:37274057-37274076 | None:intergenic | 20.0% |
| !! | CATATAGTAATGTAAACTAT+TGG | + | chr1_1:37274238-37274257 | Msa0021090:intron | 20.0% |
| !!! | TTTGGGAGTTTTAAAAAAAT+AGG | + | chr1_1:37274398-37274417 | Msa0021090:intron | 20.0% |
| !!! | TTGGGAGTTTTAAAAAAATA+GGG | + | chr1_1:37274399-37274418 | Msa0021090:intron | 20.0% |
| !!! | AGTTTTAAAAAAATAGGGAA+AGG | + | chr1_1:37274404-37274423 | Msa0021090:intron | 20.0% |
| !!! | TGGAATTTTGAATTATTATG+AGG | - | chr1_1:37274526-37274545 | None:intergenic | 20.0% |
| !!! | GTTGTTGTTATTATTCTATT+TGG | + | chr1_1:37274847-37274866 | Msa0021090:intron | 20.0% |
| !! | TCTATTTGGTTAAATTGATT+TGG | + | chr1_1:37274861-37274880 | Msa0021090:intron | 20.0% |
| !! | GTTAGTTAACATATATAATG+AGG | + | chr1_1:37274956-37274975 | Msa0021090:intron | 20.0% |
| !! | TGTCATTGTTTCATATATTA+TGG | + | chr1_1:37275337-37275356 | Msa0021090:intron | 20.0% |
| !!! | TTATCAGGTATATTCTAAAA+AGG | - | chr1_1:37275525-37275544 | None:intergenic | 20.0% |
| !! | TTTCACAATATAACATTATC+AGG | - | chr1_1:37275540-37275559 | None:intergenic | 20.0% |
| !! | TACAAATAAGCTAAAATTCA+GGG | - | chr1_1:37275944-37275963 | None:intergenic | 20.0% |
| !! | TTACAAATAAGCTAAAATTC+AGG | - | chr1_1:37275945-37275964 | None:intergenic | 20.0% |
| !!! | ATACTGATTTATTTACTTTC+CGG | + | chr1_1:37276055-37276074 | Msa0021090:intron | 20.0% |
| !!! | TATATTTATCCAGATTTTTC+AGG | - | chr1_1:37276354-37276373 | None:intergenic | 20.0% |
| !! | GAAAAATCTGGATAAATATA+AGG | + | chr1_1:37276354-37276373 | Msa0021090:CDS | 20.0% |
| !!! | GTTTTTCATAATACATTCAA+AGG | + | chr1_1:37276407-37276426 | Msa0021090:intron | 20.0% |
| !!! | TGAAAAATACATATAATGGA+TGG | - | chr1_1:37276602-37276621 | None:intergenic | 20.0% |
| !! | CATGTGAAAAATACATATAA+TGG | - | chr1_1:37276606-37276625 | None:intergenic | 20.0% |
| !!! | CATTATATGTATTTTTCACA+TGG | + | chr1_1:37276604-37276623 | Msa0021090:intron | 20.0% |
| !! | ATAAGTAGTGTATTTATGAT+TGG | + | chr1_1:37277426-37277445 | Msa0021090:intron | 20.0% |
| !! | TAAGTAGTGTATTTATGATT+GGG | + | chr1_1:37277427-37277446 | Msa0021090:intron | 20.0% |
| !! | ATTATAAACAGCATTATATC+TGG | - | chr1_1:37277912-37277931 | None:intergenic | 20.0% |
| ! | TTGTTAGAATCAGAAGAATT+GGG | - | chr1_1:37273736-37273755 | None:intergenic | 25.0% |
| ! | TTTGAAGATGAAATTCTCAT+CGG | - | chr1_1:37273806-37273825 | None:intergenic | 25.0% |
| ! | ATTTCAACAAACATACATAC+AGG | + | chr1_1:37273968-37273987 | Msa0021090:intron | 25.0% |
| ! | ATAGTAATGTAAACTATTGG+AGG | + | chr1_1:37274241-37274260 | Msa0021090:intron | 25.0% |
| ! | GAAAATCTACTAACTCATAT+TGG | + | chr1_1:37274295-37274314 | Msa0021090:intron | 25.0% |
| !! | TAACTCATATTGGTTGATTT+AGG | + | chr1_1:37274305-37274324 | Msa0021090:intron | 25.0% |
| !!! | TTTTTAAAACTCCCAAACAA+GGG | - | chr1_1:37274395-37274414 | None:intergenic | 25.0% |
| !!! | TTTTTTAAAACTCCCAAACA+AGG | - | chr1_1:37274396-37274415 | None:intergenic | 25.0% |
| !! | AAAAAAATAGGGAAAGGTTT+TGG | + | chr1_1:37274410-37274429 | Msa0021090:intron | 25.0% |
| !! | AAAAAATAGGGAAAGGTTTT+GGG | + | chr1_1:37274411-37274430 | Msa0021090:intron | 25.0% |
| ! | CAATACATTGTGTTATACTT+TGG | - | chr1_1:37274571-37274590 | None:intergenic | 25.0% |
| !!! | GTTTTTTAACTCTCAAACAA+GGG | + | chr1_1:37274662-37274681 | Msa0021090:intron | 25.0% |
| !!! | TTTTTTAACTCTCAAACAAG+GGG | + | chr1_1:37274663-37274682 | Msa0021090:intron | 25.0% |
| ! | AACAACAATAGAAGAATATG+GGG | - | chr1_1:37274833-37274852 | None:intergenic | 25.0% |
| ! | CAACAACAATAGAAGAATAT+GGG | - | chr1_1:37274834-37274853 | None:intergenic | 25.0% |
| ! | ACAACAACAATAGAAGAATA+TGG | - | chr1_1:37274835-37274854 | None:intergenic | 25.0% |
| !!! | TATAAGAAGTTTTTGAGAGT+TGG | - | chr1_1:37275216-37275235 | None:intergenic | 25.0% |
| ! | TCTTATATAGTCATTAAGAC+AGG | + | chr1_1:37275229-37275248 | Msa0021090:intron | 25.0% |
| !!! | ATTTGAAGTCATGTTGTTTT+GGG | - | chr1_1:37275481-37275500 | None:intergenic | 25.0% |
| !!! | AATTTGAAGTCATGTTGTTT+TGG | - | chr1_1:37275482-37275501 | None:intergenic | 25.0% |
| ! | TCTAAAAAGGACTATAATGT+TGG | - | chr1_1:37275512-37275531 | None:intergenic | 25.0% |
| ! | TTAATTGAATTTCACATGCT+AGG | - | chr1_1:37275627-37275646 | None:intergenic | 25.0% |
| ! | CATCATTCATTGTGATATTA+TGG | - | chr1_1:37275674-37275693 | None:intergenic | 25.0% |
| ! | ATGCGTAAAAAAAAACTGAT+GGG | - | chr1_1:37275985-37276004 | None:intergenic | 25.0% |
| ! | AATGCGTAAAAAAAAACTGA+TGG | - | chr1_1:37275986-37276005 | None:intergenic | 25.0% |
| ! | ATTTATTTAATCTACGGAAC+AGG | + | chr1_1:37276157-37276176 | Msa0021090:intron | 25.0% |
| ! | ACATCAAAAGCTTCTATATT+TGG | + | chr1_1:37276292-37276311 | Msa0021090:CDS | 25.0% |
| !!! | AGGAGTTACTTTGATAATTT+TGG | + | chr1_1:37276427-37276446 | Msa0021090:intron | 25.0% |
| ! | AGTAATATCAGATAGTTGTT+AGG | + | chr1_1:37276630-37276649 | Msa0021090:intron | 25.0% |
| !! | TACTTATTAGTTTAAGAGCT+AGG | + | chr1_1:37276818-37276837 | Msa0021090:intron | 25.0% |
| ! | AATGTATTGGAGCTAAATTT+GGG | + | chr1_1:37276947-37276966 | Msa0021090:intron | 25.0% |
| !! | CAACACATACAATTTTTGTT+GGG | + | chr1_1:37277036-37277055 | Msa0021090:intron | 25.0% |
| !! | TAAAAATGTCATCCTTCTTT+TGG | + | chr1_1:37277360-37277379 | Msa0021090:intron | 25.0% |
| ! | ATTTATGGGATTCTAACTTA+TGG | + | chr1_1:37277387-37277406 | Msa0021090:intron | 25.0% |
| ! | TTTATGGGATTCTAACTTAT+GGG | + | chr1_1:37277388-37277407 | Msa0021090:intron | 25.0% |
| !!! | ATACTCTTTTTAATTCTTGC+TGG | + | chr1_1:37277967-37277986 | Msa0021090:intron | 25.0% |
| AAACATTACAGTAATACCCT+TGG | + | chr1_1:37273682-37273701 | Msa0021090:CDS | 30.0% | |
| GTTGTTAGAATCAGAAGAAT+TGG | - | chr1_1:37273737-37273756 | None:intergenic | 30.0% | |
| GAGAATTTCATCTTCAAATC+CGG | + | chr1_1:37273808-37273827 | Msa0021090:CDS | 30.0% | |
| ! | AAAAATAGGGAAAGGTTTTG+GGG | + | chr1_1:37274412-37274431 | Msa0021090:intron | 30.0% |
| !!! | ATTTTAAAGTTCCCCCAAAT+TGG | + | chr1_1:37274460-37274479 | Msa0021090:intron | 30.0% |
| !!! | TTTTAAAGTTCCCCCAAATT+GGG | + | chr1_1:37274461-37274480 | Msa0021090:intron | 30.0% |
| TGAGAGTTAAAAAACCAACA+AGG | - | chr1_1:37274657-37274676 | None:intergenic | 30.0% | |
| !!! | GGTTTTTTAACTCTCAAACA+AGG | + | chr1_1:37274661-37274680 | Msa0021090:intron | 30.0% |
| TAGCTTCATAAAACGTCTTA+AGG | - | chr1_1:37274780-37274799 | None:intergenic | 30.0% | |
| ACAACAATAGAAGAATATGG+GGG | - | chr1_1:37274832-37274851 | None:intergenic | 30.0% | |
| TTAATTGAGAGCAGTTAAGT+TGG | + | chr1_1:37274922-37274941 | Msa0021090:intron | 30.0% | |
| GGCATATAAAAAAGAGAATG+TGG | + | chr1_1:37274977-37274996 | Msa0021090:intron | 30.0% | |
| CAGATATTACAAACTATTCC+TGG | - | chr1_1:37275070-37275089 | None:intergenic | 30.0% | |
| TTATATTGATCTGTGTGCTT+CGG | + | chr1_1:37275102-37275121 | Msa0021090:intron | 30.0% | |
| TGACACTATGTTCTATTATG+AGG | - | chr1_1:37275322-37275341 | None:intergenic | 30.0% | |
| ATTATGGAGTTTATCCTACT+TGG | + | chr1_1:37275353-37275372 | Msa0021090:intron | 30.0% | |
| AACAAAAAAAACCACCAAGT+AGG | - | chr1_1:37275370-37275389 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTTGTTGTATGCAG+AGG | + | chr1_1:37275381-37275400 | Msa0021090:intron | 30.0% |
| AAAAAGGACTATAATGTTGG+TGG | - | chr1_1:37275509-37275528 | None:intergenic | 30.0% | |
| CTGTACATGAAGAATTTCTA+GGG | - | chr1_1:37275732-37275751 | None:intergenic | 30.0% | |
| ACTGTACATGAAGAATTTCT+AGG | - | chr1_1:37275733-37275752 | None:intergenic | 30.0% | |
| TCTTCATGTACAGTTTGAAT+AGG | + | chr1_1:37275739-37275758 | Msa0021090:intron | 30.0% | |
| AAGTTATCACTTAGAAGCTT+TGG | - | chr1_1:37276259-37276278 | None:intergenic | 30.0% | |
| TTCTATATTTGGCCATTCTA+TGG | + | chr1_1:37276303-37276322 | Msa0021090:CDS | 30.0% | |
| TCTATATTTGGCCATTCTAT+GGG | + | chr1_1:37276304-37276323 | Msa0021090:CDS | 30.0% | |
| !!! | TGGCAATGTTTTGAAAGTTA+TGG | + | chr1_1:37276447-37276466 | Msa0021090:intron | 30.0% |
| TATGTTCACAATCTCAGTTA+GGG | - | chr1_1:37276478-37276497 | None:intergenic | 30.0% | |
| ATAATAGCGATAGAAATACC+AGG | - | chr1_1:37276659-37276678 | None:intergenic | 30.0% | |
| TCAAATCTCCATTCTAAACT+TGG | + | chr1_1:37276693-37276712 | Msa0021090:intron | 30.0% | |
| CATCATATCCAAGTTTAGAA+TGG | - | chr1_1:37276704-37276723 | None:intergenic | 30.0% | |
| TTAGCTAGTTAGCAATGTAT+TGG | + | chr1_1:37276934-37276953 | Msa0021090:intron | 30.0% | |
| CAATGTATTGGAGCTAAATT+TGG | + | chr1_1:37276946-37276965 | Msa0021090:intron | 30.0% | |
| ! | GCAACACATACAATTTTTGT+TGG | + | chr1_1:37277035-37277054 | Msa0021090:intron | 30.0% |
| AGTTTATTGTTCAAACTCCA+TGG | + | chr1_1:37277269-37277288 | Msa0021090:intron | 30.0% | |
| !! | CTTCTTTTGGTGACATTTAT+GGG | + | chr1_1:37277373-37277392 | Msa0021090:intron | 30.0% |
| AAATCCTACAAATTGTCCTT+GGG | + | chr1_1:37277525-37277544 | Msa0021090:CDS | 30.0% | |
| ! | AAGGCATTCACAAATTATCT+AGG | + | chr1_1:37277553-37277572 | Msa0021090:CDS | 30.0% |
| TAGGTGACAATAAATCTGAA+TGG | + | chr1_1:37277572-37277591 | Msa0021090:CDS | 30.0% | |
| AGGTGACAATAAATCTGAAT+GGG | + | chr1_1:37277573-37277592 | Msa0021090:CDS | 30.0% | |
| TAATAAGAGTGATCATAACC+AGG | - | chr1_1:37278125-37278144 | None:intergenic | 30.0% | |
| TTTCAATAGAGATCATGCAG+CGG | + | chr1_1:37273561-37273580 | Msa0021090:five_prime_UTR | 35.0% | |
| AAAGTTCATTGAACAGCCAA+GGG | - | chr1_1:37273701-37273720 | None:intergenic | 35.0% | |
| AATCATTCCCTGTTCTGTAT+TGG | + | chr1_1:37273761-37273780 | Msa0021090:CDS | 35.0% | |
| ! | AAAATTACTTGGAGAGGTGT+CGG | - | chr1_1:37273878-37273897 | None:intergenic | 35.0% |
| TCAACAAACATACATACAGG+AGG | + | chr1_1:37273971-37273990 | Msa0021090:intron | 35.0% | |
| !! | AAAATAGGGAAAGGTTTTGG+GGG | + | chr1_1:37274413-37274432 | Msa0021090:intron | 35.0% |
| ! | TTTAAAGTTCCCCCAAATTG+GGG | + | chr1_1:37274462-37274481 | Msa0021090:intron | 35.0% |
| AAACCAACAAGGAAAAGAGA+TGG | - | chr1_1:37274646-37274665 | None:intergenic | 35.0% | |
| CAACAATAGAAGAATATGGG+GGG | - | chr1_1:37274831-37274850 | None:intergenic | 35.0% | |
| GTGTATCAATCTCATCAAGT+AGG | + | chr1_1:37274888-37274907 | Msa0021090:intron | 35.0% | |
| TATCAATCTCATCAAGTAGG+TGG | + | chr1_1:37274891-37274910 | Msa0021090:intron | 35.0% | |
| CACAGATCAATATAACCAAC+TGG | - | chr1_1:37275097-37275116 | None:intergenic | 35.0% | |
| TCACTAGATAACCTTTGTGA+AGG | + | chr1_1:37275292-37275311 | Msa0021090:intron | 35.0% | |
| AGTTTGAATAGGATGAGTAG+AGG | + | chr1_1:37275750-37275769 | Msa0021090:intron | 35.0% | |
| TTGTATGGAGTGGGATAATT+CGG | + | chr1_1:37275784-37275803 | Msa0021090:intron | 35.0% | |
| TTACTTTCCGGAACAGTTAT+TGG | + | chr1_1:37276067-37276086 | Msa0021090:intron | 35.0% | |
| TCTATAGCCAATAACTGTTC+CGG | - | chr1_1:37276077-37276096 | None:intergenic | 35.0% | |
| CATGTATGACTATGTTGTCA+AGG | + | chr1_1:37276228-37276247 | Msa0021090:CDS | 35.0% | |
| GACTATCTACCTGAAAAATC+TGG | + | chr1_1:37276342-37276361 | Msa0021090:CDS | 35.0% | |
| GTATGTTCACAATCTCAGTT+AGG | - | chr1_1:37276479-37276498 | None:intergenic | 35.0% | |
| TGTTGGAGAAGCTTATGAAT+TGG | + | chr1_1:37276754-37276773 | Msa0021090:intron | 35.0% | |
| AATAGAAACACTAGAACGAG+TGG | + | chr1_1:37276869-37276888 | Msa0021090:intron | 35.0% | |
| ! | CGAGTGGTTTTCATTTAAGT+AGG | + | chr1_1:37276885-37276904 | Msa0021090:intron | 35.0% |
| AGATCCATCTTGCAAGAATA+TGG | + | chr1_1:37277008-37277027 | Msa0021090:intron | 35.0% | |
| AGTTCCATATTCTTGCAAGA+TGG | - | chr1_1:37277015-37277034 | None:intergenic | 35.0% | |
| ! | AAAGTTTAGCTTCAGAACGT+TGG | - | chr1_1:37277109-37277128 | None:intergenic | 35.0% |
| TATTGTTCAAACTCCATGGA+AGG | + | chr1_1:37277273-37277292 | Msa0021090:intron | 35.0% | |
| CCATAAATGTCACCAAAAGA+AGG | - | chr1_1:37277375-37277394 | None:intergenic | 35.0% | |
| !! | CCTTCTTTTGGTGACATTTA+TGG | + | chr1_1:37277372-37277391 | Msa0021090:intron | 35.0% |
| !! | CAATTTGTAGGATTTGCTAC+CGG | - | chr1_1:37277520-37277539 | None:intergenic | 35.0% |
| CAAATCCTACAAATTGTCCT+TGG | + | chr1_1:37277524-37277543 | Msa0021090:CDS | 35.0% | |
| AATCCTACAAATTGTCCTTG+GGG | + | chr1_1:37277526-37277545 | Msa0021090:CDS | 35.0% | |
| TGACAATAAATCTGAATGGG+AGG | + | chr1_1:37277576-37277595 | Msa0021090:CDS | 35.0% | |
| TACCTGATCAATCAAAATGC+TGG | - | chr1_1:37277735-37277754 | None:intergenic | 35.0% | |
| GAAGTTACAATTGTAGTTGC+TGG | + | chr1_1:37277807-37277826 | Msa0021090:intron | 35.0% | |
| ATTCAACTTGCAACTACAAC+GGG | - | chr1_1:37277873-37277892 | None:intergenic | 35.0% | |
| CATTCAACTTGCAACTACAA+CGG | - | chr1_1:37277874-37277893 | None:intergenic | 35.0% | |
| ! | GCAAGTTGAATGAACCAAAA+TGG | + | chr1_1:37277882-37277901 | Msa0021090:intron | 35.0% |
| ! | TTATATCTGGCTGACCATTT+TGG | - | chr1_1:37277899-37277918 | None:intergenic | 35.0% |
| !! | TTACTATTGCCCTACTTTTC+AGG | + | chr1_1:37278004-37278023 | Msa0021090:intron | 35.0% |
| !! | TACTATTGCCCTACTTTTCA+GGG | + | chr1_1:37278005-37278024 | Msa0021090:intron | 35.0% |
| ! | TTGAGTAGTGGGAAGATGTT+CGG | + | chr1_1:37273640-37273659 | Msa0021090:CDS | 40.0% |
| GAAAGTTCATTGAACAGCCA+AGG | - | chr1_1:37273702-37273721 | None:intergenic | 40.0% | |
| !! | AAATTACTTGGAGAGGTGTC+GGG | - | chr1_1:37273877-37273896 | None:intergenic | 40.0% |
| ACAGGAGGTTTGAATGTTGA+AGG | + | chr1_1:37273986-37274005 | Msa0021090:intron | 40.0% | |
| !! | TTGGAGGTTTGCTATTGACA+TGG | + | chr1_1:37274257-37274276 | Msa0021090:intron | 40.0% |
| !! | TTTAGGCTTTGTTTGCGAGT+TGG | + | chr1_1:37274322-37274341 | Msa0021090:intron | 40.0% |
| !! | TTAGGCTTTGTTTGCGAGTT+GGG | + | chr1_1:37274323-37274342 | Msa0021090:intron | 40.0% |
| !! | TTTGTTTGCGAGTTGGGTTT+TGG | + | chr1_1:37274329-37274348 | Msa0021090:intron | 40.0% |
| TGGAGAGATAAACCCTTGTT+TGG | + | chr1_1:37274380-37274399 | Msa0021090:intron | 40.0% | |
| ! | GGAGAGATAAACCCTTGTTT+GGG | + | chr1_1:37274381-37274400 | Msa0021090:intron | 40.0% |
| !!! | AAATAGGGAAAGGTTTTGGG+GGG | + | chr1_1:37274414-37274433 | Msa0021090:intron | 40.0% |
| TTAAAGTTCCCCCAAATTGG+GGG | + | chr1_1:37274463-37274482 | Msa0021090:intron | 40.0% | |
| TTAACTCTCAAACAAGGGGA+AGG | + | chr1_1:37274667-37274686 | Msa0021090:intron | 40.0% | |
| !!! | CTTTGTTTGCGAGTTTTGAG+GGG | - | chr1_1:37274757-37274776 | None:intergenic | 40.0% |
| !!! | GCTTTGTTTGCGAGTTTTGA+GGG | - | chr1_1:37274758-37274777 | None:intergenic | 40.0% |
| ! | TGGATAGAGCATCAATTCCA+CGG | + | chr1_1:37274997-37275016 | Msa0021090:intron | 40.0% |
| GACTCTCCCAATTGCAAAAA+CGG | - | chr1_1:37275025-37275044 | None:intergenic | 40.0% | |
| TGTAATATCTGTGTGCCAGT+TGG | + | chr1_1:37275079-37275098 | Msa0021090:intron | 40.0% | |
| AAATGGTATCTTGAAGAGGG+GGG | - | chr1_1:37275146-37275165 | None:intergenic | 40.0% | |
| GAAATGGTATCTTGAAGAGG+GGG | - | chr1_1:37275147-37275166 | None:intergenic | 40.0% | |
| CGAAATGGTATCTTGAAGAG+GGG | - | chr1_1:37275148-37275167 | None:intergenic | 40.0% | |
| GCGAAATGGTATCTTGAAGA+GGG | - | chr1_1:37275149-37275168 | None:intergenic | 40.0% | |
| ATGTGAGAGTTGAAGAGCAA+CGG | - | chr1_1:37275183-37275202 | None:intergenic | 40.0% | |
| !! | GAAGTTTTTGAGAGTTGGAG+AGG | - | chr1_1:37275211-37275230 | None:intergenic | 40.0% |
| ATGGAGTTTATCCTACTTGG+TGG | + | chr1_1:37275356-37275375 | Msa0021090:intron | 40.0% | |
| TAGGAATTCAGCAATCTGCA+AGG | - | chr1_1:37275566-37275585 | None:intergenic | 40.0% | |
| CACATGCTAGGTAACAATAC+AGG | - | chr1_1:37275615-37275634 | None:intergenic | 40.0% | |
| GAATAGGATGAGTAGAGGTA+AGG | + | chr1_1:37275755-37275774 | Msa0021090:intron | 40.0% | |
| AATGTACATCGCACATCTGA+AGG | - | chr1_1:37276108-37276127 | None:intergenic | 40.0% | |
| TTTAATCTACGGAACAGGTG+CGG | + | chr1_1:37276162-37276181 | Msa0021090:intron | 40.0% | |
| TCAATGCTACGCAAGAGAAA+TGG | + | chr1_1:37276194-37276213 | Msa0021090:CDS | 40.0% | |
| CGCAAGAGAAATGGAAGAAT+TGG | + | chr1_1:37276203-37276222 | Msa0021090:CDS | 40.0% | |
| ATATTTGGCCATTCTATGGG+TGG | + | chr1_1:37276307-37276326 | Msa0021090:CDS | 40.0% | |
| TATTTGGCCATTCTATGGGT+GGG | + | chr1_1:37276308-37276327 | Msa0021090:CDS | 40.0% | |
| CAGATAGTTGTTAGGATACC+TGG | + | chr1_1:37276638-37276657 | Msa0021090:intron | 40.0% | |
| ACTTCCATATCTCTGAGTGT+TGG | + | chr1_1:37276737-37276756 | Msa0021090:intron | 40.0% | |
| TTCTCCAACACTCAGAGATA+TGG | - | chr1_1:37276744-37276763 | None:intergenic | 40.0% | |
| GAATTTCAGTGTGCAACAGA+AGG | + | chr1_1:37276776-37276795 | Msa0021090:intron | 40.0% | |
| !! | CAGAAGGTTTTGTGTATAGC+TGG | + | chr1_1:37276792-37276811 | Msa0021090:intron | 40.0% |
| CTTGCAAGATGGATCTAAGA+TGG | - | chr1_1:37277004-37277023 | None:intergenic | 40.0% | |
| TTCCAGCAAGAGCAAAAACT+AGG | + | chr1_1:37277180-37277199 | Msa0021090:intron | 40.0% | |
| TGTGCTGGATATGAGAATGT+TGG | + | chr1_1:37277203-37277222 | Msa0021090:intron | 40.0% | |
| ACTAAGCAGTTGAAGAATGC+AGG | + | chr1_1:37277664-37277683 | Msa0021090:intron | 40.0% | |
| ! | CACTTGGTAACAAAGTTTCC+TGG | + | chr1_1:37277701-37277720 | Msa0021090:CDS | 40.0% |
| !!! | TGCCAGCATTTTGATTGATC+AGG | + | chr1_1:37277730-37277749 | Msa0021090:CDS | 40.0% |
| !! | ACTATTGCCCTACTTTTCAG+GGG | + | chr1_1:37278006-37278025 | Msa0021090:intron | 40.0% |
| ! | TAAGCCTAAGAGCATGATGT+CGG | - | chr1_1:37278178-37278197 | None:intergenic | 40.0% |
| CCATCTTCTTCCTTTCTCTC+CGG | - | chr1_1:37273600-37273619 | None:intergenic | 45.0% | |
| AGAGAAAGGAAGAAGATGGC+AGG | + | chr1_1:37273601-37273620 | Msa0021090:exon | 45.0% | |
| AATTCTCATCGGTGCAAGTG+AGG | - | chr1_1:37273795-37273814 | None:intergenic | 45.0% | |
| !! | AATTACTTGGAGAGGTGTCG+GGG | - | chr1_1:37273876-37273895 | None:intergenic | 45.0% |
| ! | TTGAAGGTGAAGCTGATTCC+TGG | + | chr1_1:37274002-37274021 | Msa0021090:CDS | 45.0% |
| ! | TGAAGGTGAAGCTGATTCCT+GGG | + | chr1_1:37274003-37274022 | Msa0021090:CDS | 45.0% |
| !!! | TTTGCGAGTTGGGTTTTGGA+GGG | + | chr1_1:37274333-37274352 | Msa0021090:intron | 45.0% |
| !!! | AAGGTTTTGGGGGGTTTTGA+AGG | + | chr1_1:37274423-37274442 | Msa0021090:intron | 45.0% |
| !!! | AGGTTTTGGGGGGTTTTGAA+GGG | + | chr1_1:37274424-37274443 | Msa0021090:intron | 45.0% |
| TAAAGTTCCCCCAAATTGGG+GGG | + | chr1_1:37274464-37274483 | Msa0021090:intron | 45.0% | |
| CCAACAAGGAAAAGAGATGG+AGG | - | chr1_1:37274643-37274662 | None:intergenic | 45.0% | |
| ! | CCTCCATCTCTTTTCCTTGT+TGG | + | chr1_1:37274640-37274659 | Msa0021090:intron | 45.0% |
| !!! | GGCTTTGTTTGCGAGTTTTG+AGG | - | chr1_1:37274759-37274778 | None:intergenic | 45.0% |
| ! | GGATAGAGCATCAATTCCAC+GGG | + | chr1_1:37274998-37275017 | Msa0021090:intron | 45.0% |
| ! | GATAGAGCATCAATTCCACG+GGG | + | chr1_1:37274999-37275018 | Msa0021090:intron | 45.0% |
| TAGAGTCTCTCAAATGCTCC+AGG | + | chr1_1:37275049-37275068 | Msa0021090:intron | 45.0% | |
| AATGGTATCTTGAAGAGGGG+GGG | - | chr1_1:37275145-37275164 | None:intergenic | 45.0% | |
| GGCGAAATGGTATCTTGAAG+AGG | - | chr1_1:37275150-37275169 | None:intergenic | 45.0% | |
| TGTGAGAGTTGAAGAGCAAC+GGG | - | chr1_1:37275182-37275201 | None:intergenic | 45.0% | |
| TATGAGGCAAGCCTTCACAA+AGG | - | chr1_1:37275306-37275325 | None:intergenic | 45.0% | |
| ! | AAGTGTCACTGCAGATTTGG+TGG | - | chr1_1:37275438-37275457 | None:intergenic | 45.0% |
| ! | GTGAAGTGTCACTGCAGATT+TGG | - | chr1_1:37275441-37275460 | None:intergenic | 45.0% |
| !!! | GTTGTTTTGGGTGCGCATAT+AGG | - | chr1_1:37275469-37275488 | None:intergenic | 45.0% |
| !! | GCTTGTTGTGACATGACAGT+CGG | + | chr1_1:37275696-37275715 | Msa0021090:intron | 45.0% |
| GATGAGTAGAGGTAAGGTTC+TGG | + | chr1_1:37275761-37275780 | Msa0021090:intron | 45.0% | |
| ! | GAGGTAAGGTTCTGGTTGTA+TGG | + | chr1_1:37275769-37275788 | Msa0021090:intron | 45.0% |
| ! | AAGGTTCTGGTTGTATGGAG+TGG | + | chr1_1:37275774-37275793 | Msa0021090:intron | 45.0% |
| ! | AGGTTCTGGTTGTATGGAGT+GGG | + | chr1_1:37275775-37275794 | Msa0021090:intron | 45.0% |
| TTAATCTACGGAACAGGTGC+GGG | + | chr1_1:37276163-37276182 | Msa0021090:intron | 45.0% | |
| ! | GCTTTTGATGTGTCAAGCTG+TGG | - | chr1_1:37276283-37276302 | None:intergenic | 45.0% |
| CTGCAACAAGCTGACTGTAT+CGG | + | chr1_1:37276508-37276527 | Msa0021090:intron | 45.0% | |
| TTGGGATTGCAGATTAGCAC+AGG | + | chr1_1:37276965-37276984 | Msa0021090:intron | 45.0% | |
| !! | TAAGAGGTCAGAGCATTGCA+GGG | - | chr1_1:37277151-37277170 | None:intergenic | 45.0% |
| GCTGGAACTTTACTCCTAAG+AGG | - | chr1_1:37277167-37277186 | None:intergenic | 45.0% | |
| !! | CACCTAGTTTTTGCTCTTGC+TGG | - | chr1_1:37277185-37277204 | None:intergenic | 45.0% |
| AGAGCAAAAACTAGGTGTGC+TGG | + | chr1_1:37277188-37277207 | Msa0021090:intron | 45.0% | |
| ! | TGTTGGAGTAGCACTTGTTG+AGG | + | chr1_1:37277220-37277239 | Msa0021090:intron | 45.0% |
| TGTTCAAACTCCATGGAAGG+TGG | + | chr1_1:37277276-37277295 | Msa0021090:intron | 45.0% | |
| GATTACAGTTCCACCTTCCA+TGG | - | chr1_1:37277289-37277308 | None:intergenic | 45.0% | |
| TGTCCCCAAGGACAATTTGT+AGG | - | chr1_1:37277532-37277551 | None:intergenic | 45.0% | |
| AAATTGTCCTTGGGGACAGA+AGG | + | chr1_1:37277534-37277553 | Msa0021090:CDS | 45.0% | |
| TGAATGGGAGGTAAGCTAGA+AGG | + | chr1_1:37277588-37277607 | Msa0021090:intron | 45.0% | |
| GAATGGGAGGTAAGCTAGAA+GGG | + | chr1_1:37277589-37277608 | Msa0021090:intron | 45.0% | |
| AATGGGAGGTAAGCTAGAAG+GGG | + | chr1_1:37277590-37277609 | Msa0021090:intron | 45.0% | |
| GGATTACGATGCTACTCACT+TGG | + | chr1_1:37277685-37277704 | Msa0021090:intron | 45.0% | |
| AAAATGCTGGCAGATACACC+AGG | - | chr1_1:37277722-37277741 | None:intergenic | 45.0% | |
| !! | CTATTGCCCTACTTTTCAGG+GGG | + | chr1_1:37278007-37278026 | Msa0021090:intron | 45.0% |
| CATCTTCCCCCTGAAAAGTA+GGG | - | chr1_1:37278016-37278035 | None:intergenic | 45.0% | |
| TCATCTTCCCCCTGAAAAGT+AGG | - | chr1_1:37278017-37278036 | None:intergenic | 45.0% | |
| ACATCCGACATCATGCTCTT+AGG | + | chr1_1:37278171-37278190 | Msa0021090:CDS | 45.0% | |
| ACCAAAGACACCGGAGAGAA+AGG | + | chr1_1:37273587-37273606 | Msa0021090:five_prime_UTR | 50.0% | |
| TCCTTTCTCTCCGGTGTCTT+TGG | - | chr1_1:37273591-37273610 | None:intergenic | 50.0% | |
| CCGGAGAGAAAGGAAGAAGA+TGG | + | chr1_1:37273597-37273616 | Msa0021090:exon | 50.0% | |
| GAAAGGAAGAAGATGGCAGG+AGG | + | chr1_1:37273604-37273623 | Msa0021090:exon | 50.0% | |
| ! | CAGTGACGGAGTTGAGTAGT+GGG | + | chr1_1:37273629-37273648 | Msa0021090:CDS | 50.0% |
| ! | AGTAGTGGGAAGATGTTCGG+AGG | + | chr1_1:37273643-37273662 | Msa0021090:CDS | 50.0% |
| CGGAGAGCCAATACAGAACA+GGG | - | chr1_1:37273771-37273790 | None:intergenic | 50.0% | |
| !! | CCTGTTCTGTATTGGCTCTC+CGG | + | chr1_1:37273769-37273788 | Msa0021090:CDS | 50.0% |
| !! | ATTACTTGGAGAGGTGTCGG+GGG | - | chr1_1:37273875-37273894 | None:intergenic | 50.0% |
| ! | GAAGCTGATTCCTGGGACTT+TGG | + | chr1_1:37274010-37274029 | Msa0021090:CDS | 50.0% |
| ! | GATTCCTGGGACTTTGGTGT+TGG | + | chr1_1:37274016-37274035 | Msa0021090:CDS | 50.0% |
| CATACCAACACCAAAGTCCC+AGG | - | chr1_1:37274023-37274042 | None:intergenic | 50.0% | |
| !! | GTTTGCGAGTTGGGTTTTGG+AGG | + | chr1_1:37274332-37274351 | Msa0021090:intron | 50.0% |
| !!! | TTGCGAGTTGGGTTTTGGAG+GGG | + | chr1_1:37274334-37274353 | Msa0021090:intron | 50.0% |
| GGAAGGGAAGGAAAGGCTTA+TGG | + | chr1_1:37274360-37274379 | Msa0021090:intron | 50.0% | |
| !!! | TTTGCGAGTTTTGAGGGGAG+GGG | - | chr1_1:37274752-37274771 | None:intergenic | 50.0% |
| !!! | GTTTGCGAGTTTTGAGGGGA+GGG | - | chr1_1:37274753-37274772 | None:intergenic | 50.0% |
| !!! | TGTTTGCGAGTTTTGAGGGG+AGG | - | chr1_1:37274754-37274773 | None:intergenic | 50.0% |
| !!! | ACGGGGCCGTTTTTGCAATT+GGG | + | chr1_1:37275016-37275035 | Msa0021090:intron | 50.0% |
| GTGAGAGTTGAAGAGCAACG+GGG | - | chr1_1:37275181-37275200 | None:intergenic | 50.0% | |
| TTGGGTGCGCATATAGGAGT+AGG | - | chr1_1:37275463-37275482 | None:intergenic | 50.0% | |
| TGCAGATTAGCACAGGTTGC+AGG | + | chr1_1:37276972-37276991 | Msa0021090:intron | 50.0% | |
| GCAGATTAGCACAGGTTGCA+GGG | + | chr1_1:37276973-37276992 | Msa0021090:intron | 50.0% | |
| CAGATTAGCACAGGTTGCAG+GGG | + | chr1_1:37276974-37276993 | Msa0021090:intron | 50.0% | |
| AGATTAGCACAGGTTGCAGG+GGG | + | chr1_1:37276975-37276994 | Msa0021090:intron | 50.0% | |
| !! | TCAGAGCATTGCAGGGCTTA+TGG | - | chr1_1:37277144-37277163 | None:intergenic | 50.0% |
| !! | CTAAGAGGTCAGAGCATTGC+AGG | - | chr1_1:37277152-37277171 | None:intergenic | 50.0% |
| CTGCAATGCTCTGACCTCTT+AGG | + | chr1_1:37277150-37277169 | Msa0021090:intron | 50.0% | |
| GTCAGTTTCTGCCTTTGCAC+CGG | + | chr1_1:37277498-37277517 | Msa0021090:intron | 50.0% | |
| !! | AGGATTTGCTACCGGTGCAA+AGG | - | chr1_1:37277512-37277531 | None:intergenic | 50.0% |
| CTGCATGATCAACTGCTACC+TGG | + | chr1_1:37278044-37278063 | Msa0021090:CDS | 50.0% | |
| GCTACCTGGCAAGTTTGAAG+AGG | + | chr1_1:37278058-37278077 | Msa0021090:CDS | 50.0% | |
| ! | GGTTGAAAGCGTAACAGCAG+TGG | - | chr1_1:37278104-37278123 | None:intergenic | 50.0% |
| CTGCTGTTACGCTTTCAACC+TGG | + | chr1_1:37278104-37278123 | Msa0021090:CDS | 50.0% | |
| CAGCGGCAAACCAAAGACAC+CGG | + | chr1_1:37273578-37273597 | Msa0021090:five_prime_UTR | 55.0% | |
| ! | GCAGTGACGGAGTTGAGTAG+TGG | + | chr1_1:37273628-37273647 | Msa0021090:CDS | 55.0% |
| CCGGAGAGCCAATACAGAAC+AGG | - | chr1_1:37273772-37273791 | None:intergenic | 55.0% | |
| !! | CAACGTGCCGCTTCTGAACA+CGG | + | chr1_1:37273835-37273854 | Msa0021090:CDS | 55.0% |
| GGCAACACCGTGTTCAGAAG+CGG | - | chr1_1:37273845-37273864 | None:intergenic | 55.0% | |
| !!! | GAGTTGGGTTTTGGAGGGGA+GGG | + | chr1_1:37274338-37274357 | Msa0021090:intron | 55.0% |
| !!! | AGTTGGGTTTTGGAGGGGAG+GGG | + | chr1_1:37274339-37274358 | Msa0021090:intron | 55.0% |
| ! | TCCCCCAAATTGGGGGGTTT+TGG | + | chr1_1:37274470-37274489 | Msa0021090:intron | 55.0% |
| CCCAAAACCCCCCAATTTGG+GGG | - | chr1_1:37274474-37274493 | None:intergenic | 55.0% | |
| ! | CCCCCAAATTGGGGGGTTTT+GGG | + | chr1_1:37274471-37274490 | Msa0021090:intron | 55.0% |
| CCCCAAAACCCCCCAATTTG+GGG | - | chr1_1:37274475-37274494 | None:intergenic | 55.0% | |
| ! | CCCCAAATTGGGGGGTTTTG+GGG | + | chr1_1:37274472-37274491 | Msa0021090:intron | 55.0% |
| CCCCCAAAACCCCCCAATTT+GGG | - | chr1_1:37274476-37274495 | None:intergenic | 55.0% | |
| !! | CCCAAATTGGGGGGTTTTGG+GGG | + | chr1_1:37274473-37274492 | Msa0021090:intron | 55.0% |
| !!! | CCAAATTGGGGGGTTTTGGG+GGG | + | chr1_1:37274474-37274493 | Msa0021090:intron | 55.0% |
| GGAAAGGCTTAGGAGGGGAA+GGG | - | chr1_1:37274727-37274746 | None:intergenic | 55.0% | |
| AGGAAAGGCTTAGGAGGGGA+AGG | - | chr1_1:37274728-37274747 | None:intergenic | 55.0% | |
| GGGAAGGAAAGGCTTAGGAG+GGG | - | chr1_1:37274732-37274751 | None:intergenic | 55.0% | |
| GGGGAAGGAAAGGCTTAGGA+GGG | - | chr1_1:37274733-37274752 | None:intergenic | 55.0% | |
| AGGGGAAGGAAAGGCTTAGG+AGG | - | chr1_1:37274734-37274753 | None:intergenic | 55.0% | |
| TTTGAGGGGAGGGGAAGGAA+AGG | - | chr1_1:37274743-37274762 | None:intergenic | 55.0% | |
| CAATTGCAAAAACGGCCCCG+TGG | - | chr1_1:37275017-37275036 | None:intergenic | 55.0% | |
| !!! | CACGGGGCCGTTTTTGCAAT+TGG | + | chr1_1:37275015-37275034 | Msa0021090:intron | 55.0% |
| GAGTTGAAGAGCAACGGGGA+GGG | - | chr1_1:37275177-37275196 | None:intergenic | 55.0% | |
| AGAGTTGAAGAGCAACGGGG+AGG | - | chr1_1:37275178-37275197 | None:intergenic | 55.0% | |
| GTGAATGCCTTCTGTCCCCA+AGG | - | chr1_1:37277544-37277563 | None:intergenic | 55.0% | |
| CACGCCTCTTCAAACTTGCC+AGG | - | chr1_1:37278065-37278084 | None:intergenic | 55.0% | |
| GATGGCAGGAGGAGCAGTGA+CGG | + | chr1_1:37273615-37273634 | Msa0021090:exon | 60.0% | |
| CTCATCGGTGCAAGTGAGGC+CGG | - | chr1_1:37273791-37273810 | None:intergenic | 60.0% | |
| AGAAGCGGCACGTTGAGCAC+CGG | - | chr1_1:37273830-37273849 | None:intergenic | 60.0% | |
| !!! | CGAGTTGGGTTTTGGAGGGG+AGG | + | chr1_1:37274337-37274356 | Msa0021090:intron | 60.0% |
| !!! | GGTTTTGGAGGGGAGGGGAA+GGG | + | chr1_1:37274344-37274363 | Msa0021090:intron | 60.0% |
| CCCCCCAAAACCCCCCAATT+TGG | - | chr1_1:37274477-37274496 | None:intergenic | 60.0% | |
| GGAAGGGGAGGGAGAAAGGA+GGG | - | chr1_1:37274697-37274716 | None:intergenic | 60.0% | |
| AGGAAGGGGAGGGAGAAAGG+AGG | - | chr1_1:37274698-37274717 | None:intergenic | 60.0% | |
| GGAAGGAAGGGGAGGGAGAA+AGG | - | chr1_1:37274701-37274720 | None:intergenic | 60.0% | |
| AGGGAAGGGAAGGAAGGGGA+GGG | - | chr1_1:37274708-37274727 | None:intergenic | 60.0% | |
| AAGGGAAGGGAAGGAAGGGG+AGG | - | chr1_1:37274709-37274728 | None:intergenic | 60.0% | |
| GGGAAGGGAAGGGAAGGAAG+GGG | - | chr1_1:37274712-37274731 | None:intergenic | 60.0% | |
| GGGGAAGGGAAGGGAAGGAA+GGG | - | chr1_1:37274713-37274732 | None:intergenic | 60.0% | |
| AGGGGAAGGGAAGGGAAGGA+AGG | - | chr1_1:37274714-37274733 | None:intergenic | 60.0% | |
| TAGGAGGGGAAGGGAAGGGA+AGG | - | chr1_1:37274718-37274737 | None:intergenic | 60.0% | |
| GGCTTAGGAGGGGAAGGGAA+GGG | - | chr1_1:37274722-37274741 | None:intergenic | 60.0% | |
| AGGCTTAGGAGGGGAAGGGA+AGG | - | chr1_1:37274723-37274742 | None:intergenic | 60.0% | |
| GGGAGGGGAAGGAAAGGCTT+AGG | - | chr1_1:37274737-37274756 | None:intergenic | 60.0% | |
| !!! | CGAGTTTTGAGGGGAGGGGA+AGG | - | chr1_1:37274748-37274767 | None:intergenic | 60.0% |
| AAGAGCAACGGGGAGGGTGA+AGG | - | chr1_1:37275171-37275190 | None:intergenic | 60.0% | |
| GGCCATTCTATGGGTGGGCA+TGG | + | chr1_1:37276313-37276332 | Msa0021090:CDS | 60.0% | |
| CGCCATGCCCACCCATAGAA+TGG | - | chr1_1:37276318-37276337 | None:intergenic | 60.0% | |
| !! | AGAGGTGTCGGGGGCGATCA+AGG | - | chr1_1:37273866-37273885 | None:intergenic | 65.0% |
| !!! | GGGTTTTGGAGGGGAGGGGA+AGG | + | chr1_1:37274343-37274362 | Msa0021090:intron | 65.0% |
| TTGGAGGGGAGGGGAAGGGA+AGG | + | chr1_1:37274348-37274367 | Msa0021090:intron | 65.0% | |
| GGGGAGGGGAAGGGAAGGAA+AGG | + | chr1_1:37274353-37274372 | Msa0021090:intron | 65.0% | |
| CGGGGAGGGTGAAGGCGAAA+TGG | - | chr1_1:37275163-37275182 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 37273521 | 37278202 | 37273521 | ID=Msa0021090;Name=Msa0021090 |
| chr1_1 | mRNA | 37273521 | 37278202 | 37273521 | ID=Msa0021090-mRNA-1;Parent=Msa0021090;Name=Msa0021090-mRNA-1;_AED=0.36;_eAED=0.36;_QI=95|1|0.66|1|1|1|6|0|286 |
| chr1_1 | exon | 37273521 | 37273889 | 37273521 | ID=Msa0021090-mRNA-1:exon:11663;Parent=Msa0021090-mRNA-1 |
| chr1_1 | exon | 37273990 | 37274037 | 37273990 | ID=Msa0021090-mRNA-1:exon:11664;Parent=Msa0021090-mRNA-1 |
| chr1_1 | exon | 37276179 | 37276375 | 37276179 | ID=Msa0021090-mRNA-1:exon:11665;Parent=Msa0021090-mRNA-1 |
| chr1_1 | exon | 37277499 | 37277597 | 37277499 | ID=Msa0021090-mRNA-1:exon:11666;Parent=Msa0021090-mRNA-1 |
| chr1_1 | exon | 37277686 | 37277751 | 37277686 | ID=Msa0021090-mRNA-1:exon:11667;Parent=Msa0021090-mRNA-1 |
| chr1_1 | exon | 37278026 | 37278202 | 37278026 | ID=Msa0021090-mRNA-1:exon:11668;Parent=Msa0021090-mRNA-1 |
| chr1_1 | five_prime_UTR | 37273521 | 37273615 | 37273521 | ID=Msa0021090-mRNA-1:five_prime_utr;Parent=Msa0021090-mRNA-1 |
| chr1_1 | CDS | 37273616 | 37273889 | 37273616 | ID=Msa0021090-mRNA-1:cds;Parent=Msa0021090-mRNA-1 |
| chr1_1 | CDS | 37273990 | 37274037 | 37273990 | ID=Msa0021090-mRNA-1:cds;Parent=Msa0021090-mRNA-1 |
| chr1_1 | CDS | 37276179 | 37276375 | 37276179 | ID=Msa0021090-mRNA-1:cds;Parent=Msa0021090-mRNA-1 |
| chr1_1 | CDS | 37277499 | 37277597 | 37277499 | ID=Msa0021090-mRNA-1:cds;Parent=Msa0021090-mRNA-1 |
| chr1_1 | CDS | 37277686 | 37277751 | 37277686 | ID=Msa0021090-mRNA-1:cds;Parent=Msa0021090-mRNA-1 |
| chr1_1 | CDS | 37278026 | 37278202 | 37278026 | ID=Msa0021090-mRNA-1:cds;Parent=Msa0021090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
