AlfalfaGEDB | Msa1135810

M. sativa cultivar zhongmu-4 / Msa1135810

KEGG: K13210
GO: GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135810	XP_024627050.1	88.218	331	39	0	60	390	300	630	0.0	569

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135810	A0A396GVK9	88.218	331	39	0	60	390	299	629	0.0	569

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004060	Msa1135810	-0.812134	4.938528e-51	-8.615850e-47
Msa0006880	Msa1135810	-0.848135	7.432973e-60	-8.615850e-47
Msa0007850	Msa1135810	-0.838463	2.832782e-57	-8.615850e-47
Msa0008840	Msa1135810	-0.828195	1.029129e-54	-8.615850e-47
Msa0010500	Msa1135810	-0.826273	2.970238e-54	-8.615850e-47
Msa0014830	Msa1135810	-0.808864	2.512119e-50	-8.615850e-47
Msa0015140	Msa1135810	-0.803027	4.239866e-49	-8.615850e-47
Msa0021090	Msa1135810	0.845834	3.172065e-59	-8.615850e-47
Msa0027580	Msa1135810	-0.803419	3.517859e-49	-8.615850e-47
Msa0029260	Msa1135810	-0.821396	4.127790e-53	-8.615850e-47

Showing 1 to 10 of 293 entries

Previous1 2 3 4 5…30Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135810	MtrunA17_Chr7g0217251	88.218	331	39	0	60	390	299	629	0.0	569
Msa1135810	MtrunA17_Chr5g0396101	74.104	251	28	2	74	287	2	252	6.99e-107	322
Msa1135810	MtrunA17_Chr5g0396101	61.798	89	20	1	5	79	275	363	1.84e-17	84.0

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135810	AT1G33680.1	54.000	100	36	4	79	177	399	489	2.09e-13	72.8

Showing 1 to 1 of 1 entries

Previous1Next

Find 210 sgRNAs with CRISPR-Local

Find 607 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGGGTTATGATCATTA+TGG	0.425468	7_4:+3558271	Msa1135810:CDS
AACCGGGTTGTCCACCAGGC+TGG	0.415446	7_4:-3551058	None:intergenic
AACTGGGGATGGACCTATGG+AGG	0.556603	7_4:-3558383	None:intergenic
AACTTGCGGATAACTAGGTG+CGG	0.688779	7_4:-3551102	None:intergenic
AAGGACAACATCCAGTCTTA+TGG	0.414360	7_4:+3559043	Msa1135810:CDS
AAGGACCGGTACAGTGTTGG+GGG	0.617380	7_4:-3558351	None:intergenic
AAGGAGGATCTAAGGCTGCT+TGG	0.531537	7_4:-3551208	None:intergenic
AAGGCCTCACCAGAGTTTGC+AGG	0.398717	7_4:+3558234	Msa1135810:CDS
AATCACCCGCAGTCTGCACC+TGG	0.524809	7_4:+3551023	Msa1135810:CDS
AATTGTAATTAATCTGAACT+GGG	0.556874	7_4:-3558399	None:intergenic

Showing 1 to 10 of 210 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACAACAATGGAAGCA+TGG	+	chr7_4:3551602-3551621	Msa1135810:intron	30.0%
CGAATTCTTATCTCATGTTA+TGG	-	chr7_4:3551999-3552018	None:intergenic	30.0%
TGACATCAAGATATGATTGA+TGG	+	chr7_4:3552085-3552104	Msa1135810:intron	30.0%
ATAAGAGGCTATAGGTTTAT+AGG	+	chr7_4:3552111-3552130	Msa1135810:intron	30.0%
GTAATCTTACTTATGTGCTT+AGG	-	chr7_4:3552137-3552156	None:intergenic	30.0%
TTTGTGTAATTTCAACCACA+TGG	+	chr7_4:3552278-3552297	Msa1135810:intron	30.0%
AAAGTGAAAATCACACCTTA+AGG	-	chr7_4:3552438-3552457	None:intergenic	30.0%
ACACCTTCATAAAAGTAAGT+TGG	+	chr7_4:3552480-3552499	Msa1135810:intron	30.0%
TTGAAAAAACTATCCCTTGT+GGG	-	chr7_4:3553194-3553213	None:intergenic	30.0%
GTACTACCCTAAAATAACTT+AGG	-	chr7_4:3553289-3553308	None:intergenic	30.0%

Showing 1 to 10 of 607 entries

Previous1 2 3 4 5…61Next

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	3550987	3559077	3550987	ID=Msa1135810;Name=Msa1135810
chr7_4	mRNA	3550987	3559077	3550987	ID=Msa1135810-mRNA-1;Parent=Msa1135810;Name=Msa1135810-mRNA-1;_AED=0.37;_eAED=0.38;_QI=0\|0\|0\|1\|0.5\|1\|3\|0\|431
chr7_4	exon	3550987	3551121	3550987	ID=Msa1135810-mRNA-1:exon:1009;Parent=Msa1135810-mRNA-1
chr7_4	exon	3551164	3551247	3551164	ID=Msa1135810-mRNA-1:exon:1010;Parent=Msa1135810-mRNA-1
chr7_4	exon	3558001	3559077	3558001	ID=Msa1135810-mRNA-1:exon:1011;Parent=Msa1135810-mRNA-1
chr7_4	CDS	3550987	3551121	3550987	ID=Msa1135810-mRNA-1:cds;Parent=Msa1135810-mRNA-1
chr7_4	CDS	3551164	3551247	3551164	ID=Msa1135810-mRNA-1:cds;Parent=Msa1135810-mRNA-1
chr7_4	CDS	3558001	3559077	3558001	ID=Msa1135810-mRNA-1:cds;Parent=Msa1135810-mRNA-1

Gene Sequence

>Msa1135810

ATGGGTCTGCACTCTGCACTAGCTGCCGATGGTTACAATCACCCGCAGTCTGCACCTGGACAAGTTTATGCCCAGCCTGGTGGACAACCCGGTTATGGGCAACCAGGTGCCCAGGCCGCACCTAGTTATCCGCAAACTTACCCTGAACAACCAGCCTCTAACAATGCAGTTTATGGCTACCAAGCAGCCTTAGATCCTCCTTATAACAGCGGCAGCCAGCCTGTCAAGTCATCATCAGGTGGTTTCAGACAGCAGGCCTACCGTCCGCCACAAGGATCTGGTGGTCCACCACTATGGGGTCAGCAAGGTTCACATTATGGCCACCCACCATCATATTACTATCAGCATCGCTGGCCATATCCCTCTCATAATCAATCATATGCACCTACTCCTTATGGAAATTATCCTCAACATATGGCTCCAAGGAGCAGTTACGGTTCTGGTTGGGAGCAAAGGCCTCACCAGAGTTTGCAGGGGCCGCCCTCACACAACAGGGGTTATGATCATTATGGTGGACAAAGGGGTCATTCATCTGAAGTTACATCATCCGCCCCGCATCCCAGTTCTATCCCCCAACACTGTACCGGTCCTTATCCTTTACCCTCCATAGGTCCATCCCCAGTTCAGATTAATTACAATTACGAAAACCGTCCCCCTGCACAATATCCATATGGAGGACATCCAACCTACCCTCAAGCCTGGGCTCAAGCAAATCATGCACCTCCACAGCAGTATGGAAAGCCACCATTGTATGGCGTGCCACCTTCACAAGGGCAGCATCCACAGGCTTATGTCCACCCTAGAGCCACTCAACCAGGCGAGATTCCGTATCAGGGTTCTACTCCAGCACAATCATATGGCAGGCCACCATTGTTTGGCATGCCACCTTCACAAGGACAACATCCAGAGTCTTATGGCCCCCCTAGAGCCACTCAACCAGGCGAGATTCCGTATCATGGTTCTACTCCAGCACAATCATATGGCTGGCCACCATTGTTTGGCATGCCACCTTCACAAGGACAACATCCAGAGTCTTATGGCCCCCCTAGAGCCACTCAACCAGGCGAGATTCCGTATCATGGTTCTACTCCAGCACAATCATATGGCAGGCCACCATTGTTTGGCATGCCACCTTCACAAGGACAACATCCAGAGTCTTATGGCCCCCCTAGAGCCACTCAACCAGGCGAGATTCCGTATCAGGGTTCTACTCCAGCACAATCACATGGCAGGCCACCATTGTATGGCGTGCCACCTTCACAAGGACAACATCCAGTCTTATGGCGGCCACCCTAG

Protein sequence

>Msa1135810

MGLHSALAADGYNHPQSAPGQVYAQPGGQPGYGQPGAQAAPSYPQTYPEQPASNNAVYGYQAALDPPYNSGSQPVKSSSGGFRQQAYRPPQGSGGPPLWGQQGSHYGHPPSYYYQHRWPYPSHNQSYAPTPYGNYPQHMAPRSSYGSGWEQRPHQSLQGPPSHNRGYDHYGGQRGHSSEVTSSAPHPSSIPQHCTGPYPLPSIGPSPVQINYNYENRPPAQYPYGGHPTYPQAWAQANHAPPQQYGKPPLYGVPPSQGQHPQAYVHPRATQPGEIPYQGSTPAQSYGRPPLFGMPPSQGQHPESYGPPRATQPGEIPYHGSTPAQSYGWPPLFGMPPSQGQHPESYGPPRATQPGEIPYHGSTPAQSYGRPPLFGMPPSQGQHPESYGPPRATQPGEIPYQGSTPAQSHGRPPLYGVPPSQGQHPVLWRPP*