AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556790 MtrunA17_Chr4g0045851 98.507 201 3 0 1 201 1 201 1.64e-138 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556790 AT3G59800.2 85.149 101 15 0 1 101 1 101 6.39e-50 159
Msa0556790 AT3G59800.1 85.149 101 15 0 1 101 1 101 2.98e-49 159
Msa0556790 AT2G43795.2 49.701 167 83 1 30 195 1 167 3.22e-46 150
Msa0556790 AT2G43795.1 73.333 90 24 0 30 119 1 90 8.62e-42 138

Find 66 sgRNAs with CRISPR-Local

Find 552 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATAACACTTCTGGATT+TGG 0.223401 4_1:-55054433 Msa0556790:three_prime_UTR
TTTCTGCAAATAGTAAATTA+TGG 0.256609 4_1:-55054622 Msa0556790:three_prime_UTR
CTAGGAAGAAGAACTGAAAA+AGG 0.260060 4_1:-55057396 Msa0556790:intron
TCATAGCCAGACCTTGTTCT+TGG 0.262017 4_1:+55054356 None:intergenic
TCAAGAAGTTTGTTGACTTT+AGG 0.279506 4_1:-55054529 Msa0556790:three_prime_UTR
TTGATAGATTGATTGTTCTA+TGG 0.299314 4_1:+55061132 None:intergenic
TGATGTTTGAATAACACTTC+TGG 0.301559 4_1:-55054439 Msa0556790:three_prime_UTR
AATCTATCAATTCAGAGAAA+TGG 0.314391 4_1:-55061119 Msa0556790:exon
TCACAAATTTCAATCGAATC+AGG 0.320223 4_1:-55061191 Msa0556790:five_prime_UTR
ATCTATCAATTCAGAGAAAT+GGG 0.342377 4_1:-55061118 Msa0556790:exon
GCAAGGCTCGGTGGTGCTTC+CGG 0.354086 4_1:-55061064 Msa0556790:CDS
GTTGATAGTGGTTGAATACT+TGG 0.366478 4_1:-55054665 Msa0556790:exon
AGAGTGGCATGCTGCCCGTT+TGG 0.423871 4_1:-55060121 Msa0556790:CDS
GATGATGAAGAGGAGCTAGA+TGG 0.425155 4_1:+55054860 None:intergenic
TCTCTCTTCGTCTTCACTAC+TGG 0.428331 4_1:+55054826 None:intergenic
TTGCAATGTGCGAACGTAGC+TGG 0.437203 4_1:+55061243 None:intergenic
TTGATTGATGTAGTGTGAAA+AGG 0.442243 4_1:-55054506 Msa0556790:three_prime_UTR
CTTCTTTGACCGCTTAGACC+TGG 0.443954 4_1:+55054784 None:intergenic
AAACATCTCACACAATTACC+TGG 0.458263 4_1:-55060089 Msa0556790:CDS
ATAAGATGATGAGGGAGTAC+AGG 0.478016 4_1:-55057352 Msa0556790:CDS
TGATTGATGTAGTGTGAAAA+GGG 0.479537 4_1:-55054505 Msa0556790:three_prime_UTR
AAGGGCTCGCAAACTTTCCC+AGG 0.487233 4_1:-55057312 Msa0556790:CDS
AGCCTAAAGTTATCACGAAA+AGG 0.487395 4_1:+55054382 None:intergenic
ATGCCATCTTCAACCTCATC+GGG 0.490780 4_1:+55061037 None:intergenic
TACTAGAGTGATTTCTACCC+TGG 0.496543 4_1:+55057294 None:intergenic
GGGACATCAAGAGTTGATAG+TGG 0.496931 4_1:-55054677 Msa0556790:CDS
TTCACTACTGGAAGAGTATG+AGG 0.499980 4_1:+55054838 None:intergenic
AGTAAGTCTAAACATTCAAA+AGG 0.504331 4_1:-55057272 Msa0556790:intron
GCTTATCCAAGAACAAGGTC+TGG 0.504454 4_1:-55054362 Msa0556790:three_prime_UTR
CAGGTCTAAGCGGTCAAAGA+AGG 0.511908 4_1:-55054783 Msa0556790:CDS
GGCTCAACTAGATGCTGAAA+GGG 0.514123 4_1:-55057330 Msa0556790:CDS
AGAGTATGAGGATGATGAAG+AGG 0.519047 4_1:+55054850 None:intergenic
AAACGGGCAGCATGCCACTC+TGG 0.524308 4_1:+55060123 None:intergenic
TTCAACCTCATCGGGACCAC+CGG 0.529801 4_1:+55061045 None:intergenic
CACAAATTTCAATCGAATCA+GGG 0.541830 4_1:-55061190 Msa0556790:five_prime_UTR
TCCGCCACCATCTTCACTAT+CGG 0.542822 4_1:+55054724 None:intergenic
AGGAGCTATTATTTCAGAGT+GGG 0.556327 4_1:+55054402 None:intergenic
TCTGGAACCGATAGTGAAGA+TGG 0.562772 4_1:-55054731 Msa0556790:CDS
GGTCCCGATGAGGTTGAAGA+TGG 0.565102 4_1:-55061040 Msa0556790:CDS
CGATGAGGTTGAAGATGGCA+TGG 0.570062 4_1:-55061035 Msa0556790:intron
CATGCCATCTTCAACCTCAT+CGG 0.571808 4_1:+55061036 None:intergenic
GGGCTCAACTAGATGCTGAA+AGG 0.573209 4_1:-55057331 Msa0556790:CDS
ACAAAGCTATGCAGAGAGCA+AGG 0.581939 4_1:-55061081 Msa0556790:CDS
CAGATGCAGATAAGATGATG+AGG 0.597568 4_1:-55057361 Msa0556790:CDS
TTTAGGCTTATCCAAGAACA+AGG 0.601464 4_1:-55054367 Msa0556790:three_prime_UTR
AACATCTCACACAATTACCT+GGG 0.601521 4_1:-55060088 Msa0556790:CDS
TGAGGACTGTCGCAGGTGGA+TGG 0.601935 4_1:-55060159 Msa0556790:intron
AGGCTCGGTGGTGCTTCCGG+TGG 0.602328 4_1:-55061061 Msa0556790:CDS
TAAGATGATGAGGGAGTACA+GGG 0.603577 4_1:-55057351 Msa0556790:CDS
AGATGCAGATAAGATGATGA+GGG 0.604147 4_1:-55057360 Msa0556790:CDS
GAATCAGGGTCTAACTGTGG+TGG 0.616678 4_1:-55061176 Msa0556790:five_prime_UTR
ACCGATAGTGAAGATGGTGG+CGG 0.628462 4_1:-55054725 Msa0556790:CDS
ATGCAGAGAGCAAGGCTCGG+TGG 0.635782 4_1:-55061073 Msa0556790:CDS
GTTCATTTCATTCACCAGAG+TGG 0.638013 4_1:-55060137 Msa0556790:CDS
ACTAGAGTGATTTCTACCCT+GGG 0.639592 4_1:+55057295 None:intergenic
TGCTTCCGGTGGTCCCGATG+AGG 0.643153 4_1:-55061050 Msa0556790:CDS
AAGGAGCTATTATTTCAGAG+TGG 0.643772 4_1:+55054401 None:intergenic
TATTCTACTATACAGACAAG+AGG 0.650041 4_1:-55057160 Msa0556790:intron
ATTCTACTATACAGACAAGA+GGG 0.661482 4_1:-55057159 Msa0556790:intron
AGGGCTCGCAAACTTTCCCA+GGG 0.663904 4_1:-55057311 Msa0556790:CDS
GCTATGCAGAGAGCAAGGCT+CGG 0.668438 4_1:-55061076 Msa0556790:CDS
TCTATCAATTCAGAGAAATG+GGG 0.673304 4_1:-55061117 Msa0556790:exon
GATTGATGTAGTGTGAAAAG+GGG 0.678302 4_1:-55054504 Msa0556790:three_prime_UTR
GATCAAAGTCCAGGTCTAAG+CGG 0.689586 4_1:-55054793 Msa0556790:CDS
ATCGAATCAGGGTCTAACTG+TGG 0.693954 4_1:-55061179 Msa0556790:five_prime_UTR
GGAACCGATAGTGAAGATGG+TGG 0.710189 4_1:-55054728 Msa0556790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTATGAATTTCTTT+TGG - chr4_1:55055219-55055238 Msa0556790:intron 10.0%
!! TAAAATACTAATAAAATTCA+AGG - chr4_1:55056848-55056867 Msa0556790:intron 10.0%
!!! TAATTGTTAATTTGTTAATT+GGG + chr4_1:55056947-55056966 None:intergenic 10.0%
!!! TTAATTGTTAATTTGTTAAT+TGG + chr4_1:55056948-55056967 None:intergenic 10.0%
!! TATATATCGTTATATTTATT+TGG + chr4_1:55057415-55057434 None:intergenic 10.0%
!!! TTATTATTTGAAAGAATTTT+TGG - chr4_1:55057502-55057521 Msa0556790:intron 10.0%
!! TAAAAAAAAAAATAATATCC+AGG + chr4_1:55057681-55057700 None:intergenic 10.0%
!!! ATTGAAATTTGTGATTTTTA+GGG + chr4_1:55054397-55054416 None:intergenic 15.0%
!! GAAATTATAAAAAAGATGTA+AGG + chr4_1:55055704-55055723 None:intergenic 15.0%
!! TGTTGTATATTATATAAACA+CGG + chr4_1:55055792-55055811 None:intergenic 15.0%
!! TTAAGAAGAAATTAAAAAAC+AGG + chr4_1:55056111-55056130 None:intergenic 15.0%
!! AATATAACGATATATAGATT+TGG - chr4_1:55057419-55057438 Msa0556790:intron 15.0%
!! GTTAAGAAAAAAATATTCTT+GGG + chr4_1:55057878-55057897 None:intergenic 15.0%
!!! TCTGTAAATTTGTTTAAAAA+GGG + chr4_1:55060110-55060129 None:intergenic 15.0%
!!! TTCTGTAAATTTGTTTAAAA+AGG + chr4_1:55060111-55060130 None:intergenic 15.0%
!!! GAAAATGATTTTATTTTGTT+TGG - chr4_1:55060189-55060208 Msa0556790:intron 15.0%
!!! GATTGAAATTTGTGATTTTT+AGG + chr4_1:55054398-55054417 None:intergenic 20.0%
!! AAAATAGAAAGAGGATAATA+TGG + chr4_1:55054596-55054615 None:intergenic 20.0%
!! GGCTAAAATTATTTGTATTA+AGG - chr4_1:55054707-55054726 Msa0556790:CDS 20.0%
!! CTTATGAAATATCTCTATAA+GGG + chr4_1:55055051-55055070 None:intergenic 20.0%
!! GTGTGTATATATTGTATTAT+AGG - chr4_1:55055350-55055369 Msa0556790:intron 20.0%
!!! ATTTACTCTTAGAAGTATAT+TGG - chr4_1:55055576-55055595 Msa0556790:intron 20.0%
!!! CTTTTTTATAATTTCAATCC+AGG - chr4_1:55055709-55055728 Msa0556790:intron 20.0%
!! TATCATATGAAATGTTATCA+GGG + chr4_1:55056016-55056035 None:intergenic 20.0%
!! ATATCATATGAAATGTTATC+AGG + chr4_1:55056017-55056036 None:intergenic 20.0%
!! AATTTCAAAATGACAAAAGT+TGG - chr4_1:55056188-55056207 Msa0556790:intron 20.0%
!! TTGTACTAAAACTTGAAATA+TGG + chr4_1:55056289-55056308 None:intergenic 20.0%
!!! ATTCCAAAACAAAACTATTT+TGG + chr4_1:55056353-55056372 None:intergenic 20.0%
!!! TTTTGTTTTGGAATTATTAG+AGG - chr4_1:55056359-55056378 Msa0556790:intron 20.0%
!!! TTTGTTTTGGAATTATTAGA+GGG - chr4_1:55056360-55056379 Msa0556790:intron 20.0%
!!! TGAATTTTGAGTAATGTTTA+AGG + chr4_1:55056765-55056784 None:intergenic 20.0%
!!! TGTGACTTTTATTTCAAATT+AGG + chr4_1:55056797-55056816 None:intergenic 20.0%
!! TAAAAAAATGACCCTTTAAA+CGG - chr4_1:55057199-55057218 Msa0556790:intron 20.0%
!!! ATTTTCATCTTTATATTCCT+GGG + chr4_1:55057652-55057671 None:intergenic 20.0%
!!! AATTTTCATCTTTATATTCC+TGG + chr4_1:55057653-55057672 None:intergenic 20.0%
!!! CTATAACTAACACTTTTATT+GGG + chr4_1:55057729-55057748 None:intergenic 20.0%
!!! ACTATAACTAACACTTTTAT+TGG + chr4_1:55057730-55057749 None:intergenic 20.0%
!! AATAAATTCATGGAAGTTAT+GGG - chr4_1:55057823-55057842 Msa0556790:intron 20.0%
!! GGTTAAGAAAAAAATATTCT+TGG + chr4_1:55057879-55057898 None:intergenic 20.0%
!!! CAATTTTGTGTCAATTTTTT+AGG - chr4_1:55058121-55058140 Msa0556790:intron 20.0%
!!! TTTGTTGTAATTTGTTTACT+AGG - chr4_1:55058180-55058199 Msa0556790:intron 20.0%
!!! AATGTGTCCTTTTTTTTTTT+TGG - chr4_1:55058726-55058745 Msa0556790:intron 20.0%
!! AAGAGATCCAAAAAAAAAAA+AGG + chr4_1:55058736-55058755 None:intergenic 20.0%
!!! TTTTTTTTTGGATCTCTTAT+AGG - chr4_1:55058738-55058757 Msa0556790:intron 20.0%
!!! TTTTTTTTGGATCTCTTATA+GGG - chr4_1:55058739-55058758 Msa0556790:intron 20.0%
!! ATTTATATTCCATAAATGAC+AGG - chr4_1:55058831-55058850 Msa0556790:intron 20.0%
!! CTATATTATTGACAAGAAAA+CGG - chr4_1:55058880-55058899 Msa0556790:intron 20.0%
!! AAGTATATTTAAACGTGAAA+AGG - chr4_1:55060036-55060055 Msa0556790:intron 20.0%
!! AGTATATTTAAACGTGAAAA+GGG - chr4_1:55060037-55060056 Msa0556790:intron 20.0%
!!! ATTGAAATGATTATTTTCGT+TGG - chr4_1:55060290-55060309 Msa0556790:intron 20.0%
!!! TGCTTTTTTTAAAAAGTTCA+AGG - chr4_1:55060365-55060384 Msa0556790:intron 20.0%
!!! GCTTTTTTTAAAAAGTTCAA+GGG - chr4_1:55060366-55060385 Msa0556790:intron 20.0%
!!! CTTTTTTTAAAAAGTTCAAG+GGG - chr4_1:55060367-55060386 Msa0556790:intron 20.0%
!! TTTCTGCAAATAGTAAATTA+TGG - chr4_1:55060972-55060991 Msa0556790:intron 20.0%
! TTGATAGATTGATTGTTCTA+TGG + chr4_1:55054465-55054484 None:intergenic 25.0%
! AATCTATCAATTCAGAGAAA+TGG - chr4_1:55054475-55054494 Msa0556790:three_prime_UTR 25.0%
! ATCTATCAATTCAGAGAAAT+GGG - chr4_1:55054476-55054495 Msa0556790:three_prime_UTR 25.0%
! CAATTGAACAAAATAGAAAG+AGG + chr4_1:55054605-55054624 None:intergenic 25.0%
!!! GGTTTTATGCTCTTAATTTT+TGG - chr4_1:55054679-55054698 Msa0556790:CDS 25.0%
!!! TGCTCTTAATTTTTGGATTA+TGG - chr4_1:55054686-55054705 Msa0556790:CDS 25.0%
!!! AGCTGTTTTAAAAGCTATTT+TGG - chr4_1:55054836-55054855 Msa0556790:CDS 25.0%
! GCTTATGAAATATCTCTATA+AGG + chr4_1:55055052-55055071 None:intergenic 25.0%
! AAAATTGAAATTCAAGCACA+GGG + chr4_1:55055074-55055093 None:intergenic 25.0%
!!! TGCTTTTTGACATTTGTTTT+TGG - chr4_1:55055095-55055114 Msa0556790:intron 25.0%
!!! GCTTTTTGACATTTGTTTTT+GGG - chr4_1:55055096-55055115 Msa0556790:intron 25.0%
! TTTGTGGAGAATTTCATAAA+TGG - chr4_1:55055260-55055279 Msa0556790:intron 25.0%
! TTGTGGAGAATTTCATAAAT+GGG - chr4_1:55055261-55055280 Msa0556790:intron 25.0%
!! TGGGTTATATGTATTTGTTT+TGG - chr4_1:55055280-55055299 Msa0556790:intron 25.0%
!!! GTTATATGTATTTGTTTTGG+AGG - chr4_1:55055283-55055302 Msa0556790:intron 25.0%
! GACAAGAATAACAAATAACA+TGG + chr4_1:55055321-55055340 None:intergenic 25.0%
!! TAATTGTGTGAGATGTTTTA+AGG + chr4_1:55055503-55055522 None:intergenic 25.0%
! AGAGTACAAAAAGAAACAAA+AGG - chr4_1:55055530-55055549 Msa0556790:intron 25.0%
! AAAAAACAGAATCAATGGAT+GGG + chr4_1:55055658-55055677 None:intergenic 25.0%
! TAAAAAACAGAATCAATGGA+TGG + chr4_1:55055659-55055678 None:intergenic 25.0%
! TGAGTAAAAAACAGAATCAA+TGG + chr4_1:55055663-55055682 None:intergenic 25.0%
!!! ATTTTATTTTGTAGCATTGC+CGG - chr4_1:55056143-55056162 Msa0556790:intron 25.0%
!!! CATGTTTTAAAATATGACTC+CGG + chr4_1:55056165-55056184 None:intergenic 25.0%
!!! AGACCAAAATAGTTTTGTTT+TGG - chr4_1:55056347-55056366 Msa0556790:intron 25.0%
!!! ACTTTTGTTACTTTAAGCTT+TGG + chr4_1:55056893-55056912 None:intergenic 25.0%
!!! TTGTTAATTTGTTAATTGGG+AGG + chr4_1:55056944-55056963 None:intergenic 25.0%
! TTCACTTAAAACCGTTTAAA+GGG + chr4_1:55057213-55057232 None:intergenic 25.0%
! TTTCACTTAAAACCGTTTAA+AGG + chr4_1:55057214-55057233 None:intergenic 25.0%
! GTTATATTTATTTGGAAGTG+CGG + chr4_1:55057407-55057426 None:intergenic 25.0%
! CAAATAATAAGTGAAGTTGA+GGG + chr4_1:55057492-55057511 None:intergenic 25.0%
! TCAAATAATAAGTGAAGTTG+AGG + chr4_1:55057493-55057512 None:intergenic 25.0%
!!! TTTTTGGAAAATCATCTCTA+TGG - chr4_1:55057518-55057537 Msa0556790:intron 25.0%
! AAAGATGAAAATTCAATTCC+TGG - chr4_1:55057660-55057679 Msa0556790:intron 25.0%
! GAATAAATTCATGGAAGTTA+TGG - chr4_1:55057822-55057841 Msa0556790:intron 25.0%
! AAAAATATTCTTGGGAGTAA+AGG + chr4_1:55057870-55057889 None:intergenic 25.0%
! TTCTTAACCATCAACAAATA+TGG - chr4_1:55057890-55057909 Msa0556790:intron 25.0%
! TCTTAACCATCAACAAATAT+GGG - chr4_1:55057891-55057910 Msa0556790:intron 25.0%
! AAAAGGTTTGACTGATTAAA+GGG + chr4_1:55058067-55058086 None:intergenic 25.0%
! AAAAAGGTTTGACTGATTAA+AGG + chr4_1:55058068-55058087 None:intergenic 25.0%
! GACAAAGCATACAATAAAAA+AGG + chr4_1:55058084-55058103 None:intergenic 25.0%
! AGTAAGTCTAAACATTCAAA+AGG - chr4_1:55058322-55058341 Msa0556790:intron 25.0%
! ATAGTTGCATAATAGTTGAA+GGG + chr4_1:55058573-55058592 None:intergenic 25.0%
!! GGAATATAAATGAACCTTTT+TGG + chr4_1:55058822-55058841 None:intergenic 25.0%
!! TTCAATTTTTGCTTATAGCT+CGG + chr4_1:55058961-55058980 None:intergenic 25.0%
!! ACTTTCAAGTAAATATGAGA+AGG + chr4_1:55059060-55059079 None:intergenic 25.0%
! ATTGATTACAAAGAAGTTCA+AGG + chr4_1:55059442-55059461 None:intergenic 25.0%
! TCTTGATTGTATAAATTGCA+CGG - chr4_1:55059611-55059630 Msa0556790:intron 25.0%
! ATAGTTAATCGATAGGAAAT+TGG + chr4_1:55059860-55059879 None:intergenic 25.0%
! TTAAATATACTTATCCAAGG+CGG + chr4_1:55060028-55060047 None:intergenic 25.0%
! CGTTTAAATATACTTATCCA+AGG + chr4_1:55060031-55060050 None:intergenic 25.0%
! GCAACAAAAGATATTGAAAA+GGG + chr4_1:55060138-55060157 None:intergenic 25.0%
! AGCAACAAAAGATATTGAAA+AGG + chr4_1:55060139-55060158 None:intergenic 25.0%
!!! TCCTAAAATTTTGAAGGAAA+GGG + chr4_1:55060342-55060361 None:intergenic 25.0%
! AAAGCAAATGGTTGAAAAAA+GGG + chr4_1:55060425-55060444 None:intergenic 25.0%
! TAAAGCAAATGGTTGAAAAA+AGG + chr4_1:55060426-55060445 None:intergenic 25.0%
! ATCTATTGATGTAAAGCAAA+TGG + chr4_1:55060437-55060456 None:intergenic 25.0%
! TTACAACCTTCAATTTATGT+TGG - chr4_1:55060505-55060524 Msa0556790:intron 25.0%
! TCAACAATTAACAAAACTGA+AGG + chr4_1:55060589-55060608 None:intergenic 25.0%
TCACAAATTTCAATCGAATC+AGG - chr4_1:55054403-55054422 Msa0556790:three_prime_UTR 30.0%
CACAAATTTCAATCGAATCA+GGG - chr4_1:55054404-55054423 Msa0556790:three_prime_UTR 30.0%
TCTATCAATTCAGAGAAATG+GGG - chr4_1:55054477-55054496 Msa0556790:three_prime_UTR 30.0%
AGAAAGAGGATAATATGGAA+GGG + chr4_1:55054591-55054610 None:intergenic 30.0%
TAGAAAGAGGATAATATGGA+AGG + chr4_1:55054592-55054611 None:intergenic 30.0%
!! ATTTGTATTAAGGCCTTGTT+TGG - chr4_1:55054717-55054736 Msa0556790:CDS 30.0%
ATAAGCTCTTTATCCAAACA+AGG + chr4_1:55054733-55054752 None:intergenic 30.0%
TCAAATAAGCCAATCCAAAT+AGG - chr4_1:55054962-55054981 Msa0556790:intron 30.0%
!!! GGGTTATTTTTTTCACTTGA+TGG + chr4_1:55055031-55055050 None:intergenic 30.0%
GAAAATTGAAATTCAAGCAC+AGG + chr4_1:55055075-55055094 None:intergenic 30.0%
TTTGGGTGTCAATATTTCAA+TGG - chr4_1:55055113-55055132 Msa0556790:intron 30.0%
! TATGAATTTCTTTTGGCGTT+TGG - chr4_1:55055226-55055245 Msa0556790:intron 30.0%
! ATGAATTTCTTTTGGCGTTT+GGG - chr4_1:55055227-55055246 Msa0556790:intron 30.0%
!!! AGGGGAGATATTTTAATGTA+GGG - chr4_1:55055967-55055986 Msa0556790:intron 30.0%
GGAGATGTGTTTATAAACTT+AGG + chr4_1:55056066-55056085 None:intergenic 30.0%
! TAAAATAGAGTTTTGCACCA+TGG - chr4_1:55056231-55056250 Msa0556790:intron 30.0%
!! TTTGTTACTTTAAGCTTTGG+AGG + chr4_1:55056890-55056909 None:intergenic 30.0%
ATGGAGAAGAGTAATAGTTA+GGG - chr4_1:55057166-55057185 Msa0556790:intron 30.0%
AGAAAACATATAGAACTCCA+TGG - chr4_1:55057771-55057790 Msa0556790:intron 30.0%
GAAAACATATAGAACTCCAT+GGG - chr4_1:55057772-55057791 Msa0556790:intron 30.0%
GAATTTATTCACATGTGAGA+AGG + chr4_1:55057812-55057831 None:intergenic 30.0%
CTCACATGTGAATAAATTCA+TGG - chr4_1:55057813-55057832 Msa0556790:intron 30.0%
! ACTATACCCATATTTGTTGA+TGG + chr4_1:55057900-55057919 None:intergenic 30.0%
TAGGAAGAAGAACTGAAAAA+GGG - chr4_1:55058199-55058218 Msa0556790:intron 30.0%
! AAACATTCAAAAGGTATGTG+TGG - chr4_1:55058331-55058350 Msa0556790:intron 30.0%
! AAAAGGTATGTGTGGTTATT+TGG - chr4_1:55058339-55058358 Msa0556790:intron 30.0%
AGGTACTAGAAAAACACAAT+AGG + chr4_1:55058379-55058398 None:intergenic 30.0%
CATCATTAGAAACTGAGTAT+GGG + chr4_1:55058405-55058424 None:intergenic 30.0%
TCATCATTAGAAACTGAGTA+TGG + chr4_1:55058406-55058425 None:intergenic 30.0%
TATTCTACTATACAGACAAG+AGG - chr4_1:55058434-55058453 Msa0556790:intron 30.0%
ATTCTACTATACAGACAAGA+GGG - chr4_1:55058435-55058454 Msa0556790:intron 30.0%
!!! TTCCAACATTTACTTTTTCC+TGG - chr4_1:55058506-55058525 Msa0556790:intron 30.0%
TAGTTGCATAATAGTTGAAG+GGG + chr4_1:55058572-55058591 None:intergenic 30.0%
CATAGTTGCATAATAGTTGA+AGG + chr4_1:55058574-55058593 None:intergenic 30.0%
CATGGTTGCTGAAATATAAA+AGG + chr4_1:55058614-55058633 None:intergenic 30.0%
! CTTTTATATTTCAGCAACCA+TGG - chr4_1:55058612-55058631 Msa0556790:intron 30.0%
GATCTCTTATAGGGTAAATA+GGG - chr4_1:55058748-55058767 Msa0556790:intron 30.0%
CTTTCAACTTTCATCCAAAA+AGG - chr4_1:55058805-55058824 Msa0556790:intron 30.0%
AGTAGTTCCTGTATAACAAA+GGG - chr4_1:55058854-55058873 Msa0556790:intron 30.0%
! TCAATTTTTGCTTATAGCTC+GGG + chr4_1:55058960-55058979 None:intergenic 30.0%
GATAAAAACAGAGCTTCATA+AGG + chr4_1:55059133-55059152 None:intergenic 30.0%
AAGGAAGATGAAATCAATGT+GGG + chr4_1:55059187-55059206 None:intergenic 30.0%
TAAGGAAGATGAAATCAATG+TGG + chr4_1:55059188-55059207 None:intergenic 30.0%
ATGGCAGTTAGTGTTTATTA+AGG + chr4_1:55059206-55059225 None:intergenic 30.0%
! AGAAGTTCAAAGTTGGTTTA+GGG + chr4_1:55059230-55059249 None:intergenic 30.0%
! AAGAAGTTCAAAGTTGGTTT+AGG + chr4_1:55059231-55059250 None:intergenic 30.0%
TAAACCAACTTTGAACTTCT+TGG - chr4_1:55059230-55059249 Msa0556790:intron 30.0%
AACTTCTTGGTTGTAATGAT+GGG - chr4_1:55059243-55059262 Msa0556790:intron 30.0%
!! AATGATGGGTAAAACTAAAG+AGG - chr4_1:55059257-55059276 Msa0556790:intron 30.0%
AAGTTCAAGGAAATGAGAAA+TGG + chr4_1:55059429-55059448 None:intergenic 30.0%
!! AAACTTGGGAATATTGACTT+GGG + chr4_1:55059509-55059528 None:intergenic 30.0%
ACAATCAAGAACTTACTGAT+AGG + chr4_1:55059601-55059620 None:intergenic 30.0%
CTTGATTGTATAAATTGCAC+GGG - chr4_1:55059612-55059631 Msa0556790:intron 30.0%
! TTCCTATCGATTAACTATAG+TGG - chr4_1:55059862-55059881 Msa0556790:intron 30.0%
!!! CAATATCTTTTGTTGCTTTG+AGG - chr4_1:55060142-55060161 Msa0556790:CDS 30.0%
! TCCCTTTCCTTCAAAATTTT+AGG - chr4_1:55060338-55060357 Msa0556790:intron 30.0%
!! CTCCTAAAATTTTGAAGGAA+AGG + chr4_1:55060343-55060362 None:intergenic 30.0%
! GCAAACTCCTAAAATTTTGA+AGG + chr4_1:55060348-55060367 None:intergenic 30.0%
TGAAAAAAGGGAACGATAAT+AGG + chr4_1:55060413-55060432 None:intergenic 30.0%
TCACTTCCAACATAAATTGA+AGG + chr4_1:55060514-55060533 None:intergenic 30.0%
!!! TTCGCCTATCGAAATTTTTT+GGG - chr4_1:55060897-55060916 Msa0556790:intron 30.0%
ATGTCCCAAAAAATTTCGAT+AGG + chr4_1:55060904-55060923 None:intergenic 30.0%
!! TCAAGAAGTTTGTTGACTTT+AGG - chr4_1:55061065-55061084 Msa0556790:CDS 30.0%
TTGATTGATGTAGTGTGAAA+AGG - chr4_1:55061088-55061107 Msa0556790:CDS 30.0%
TGATTGATGTAGTGTGAAAA+GGG - chr4_1:55061089-55061108 Msa0556790:CDS 30.0%
TGATGTTTGAATAACACTTC+TGG - chr4_1:55061155-55061174 Msa0556790:five_prime_UTR 30.0%
TTGAATAACACTTCTGGATT+TGG - chr4_1:55061161-55061180 Msa0556790:five_prime_UTR 30.0%
AAACTCATGTAACAGCAATC+AGG + chr4_1:55054653-55054672 None:intergenic 35.0%
CTGTTACATGAGTTTGTGTT+TGG - chr4_1:55054658-55054677 Msa0556790:exon 35.0%
! CTGTTTTCAGCTTATGTTCA+TGG + chr4_1:55054867-55054886 None:intergenic 35.0%
CATAAGCTGAAAACAGCATA+TGG - chr4_1:55054871-55054890 Msa0556790:CDS 35.0%
ATAAGTTCTGTGAGACTGTT+TGG + chr4_1:55054928-55054947 None:intergenic 35.0%
CAAGTTATCAAGGATACTTG+GGG + chr4_1:55054988-55055007 None:intergenic 35.0%
CCAAGTTATCAAGGATACTT+GGG + chr4_1:55054989-55055008 None:intergenic 35.0%
TCCAAGTTATCAAGGATACT+TGG + chr4_1:55054990-55055009 None:intergenic 35.0%
!! ACTTGATGGTTCTAGCTTTA+CGG + chr4_1:55055017-55055036 None:intergenic 35.0%
CATTATTCAAGCAGATGTGA+AGG + chr4_1:55055146-55055165 None:intergenic 35.0%
GAATTGAAACTTACTACGCA+TGG - chr4_1:55055168-55055187 Msa0556790:intron 35.0%
!!! TTTGGGTTGATATGGTTTTG+TGG - chr4_1:55055244-55055263 Msa0556790:intron 35.0%
!!! ATGTTTTAAGGCTAGCCAAA+CGG + chr4_1:55055491-55055510 None:intergenic 35.0%
AAACATCTCACACAATTACC+TGG - chr4_1:55055505-55055524 Msa0556790:intron 35.0%
AACATCTCACACAATTACCT+GGG - chr4_1:55055506-55055525 Msa0556790:intron 35.0%
! TTTCTTTTTGTACTCTTCCC+AGG + chr4_1:55055526-55055545 None:intergenic 35.0%
ATTTCAATCCAGGTCATTGT+TGG - chr4_1:55055719-55055738 Msa0556790:intron 35.0%
TTTCAATCCAGGTCATTGTT+GGG - chr4_1:55055720-55055739 Msa0556790:intron 35.0%
ACCTCATTGTAATAAGTTCG+AGG - chr4_1:55055825-55055844 Msa0556790:intron 35.0%
TCCTCGAACTTATTACAATG+AGG + chr4_1:55055829-55055848 None:intergenic 35.0%
TCATTGTAATAAGTTCGAGG+AGG - chr4_1:55055828-55055847 Msa0556790:intron 35.0%
CATTGTAATAAGTTCGAGGA+GGG - chr4_1:55055829-55055848 Msa0556790:intron 35.0%
!! AGTTTGGCTTTATTTCTGCA+AGG - chr4_1:55055921-55055940 Msa0556790:intron 35.0%
!! GTTTGGCTTTATTTCTGCAA+GGG - chr4_1:55055922-55055941 Msa0556790:intron 35.0%
! TATTTCTGCAAGGGTTTGTT+TGG - chr4_1:55055931-55055950 Msa0556790:intron 35.0%
! GGTTTGTTTGGTTCAAACAA+GGG - chr4_1:55055943-55055962 Msa0556790:intron 35.0%
! GTTTGTTTGGTTCAAACAAG+GGG - chr4_1:55055944-55055963 Msa0556790:intron 35.0%
!!! GAGGGGAGATATTTTAATGT+AGG - chr4_1:55055966-55055985 Msa0556790:intron 35.0%
!!! GGGGAGATATTTTAATGTAG+GGG - chr4_1:55055968-55055987 Msa0556790:intron 35.0%
! AAAAACAGGTAAGTTTTGCG+AGG + chr4_1:55056097-55056116 None:intergenic 35.0%
TCAAAATGACAAAAGTTGGC+TGG - chr4_1:55056192-55056211 Msa0556790:intron 35.0%
TAAGAACGCAGTTTACTTGT+TGG - chr4_1:55056257-55056276 Msa0556790:intron 35.0%
! TTTCAGGTCTCTTAAAGTAC+AGG + chr4_1:55056443-55056462 None:intergenic 35.0%
CAATTGATTAAGAGGAGTTG+AGG + chr4_1:55056483-55056502 None:intergenic 35.0%
GGAGGTTCTATTTCAAATGA+AGG + chr4_1:55056579-55056598 None:intergenic 35.0%
GATGGAGAAGAGTAATAGTT+AGG - chr4_1:55057165-55057184 Msa0556790:intron 35.0%
AAAATTAAGCGCTTGTCGAA+AGG - chr4_1:55057448-55057467 Msa0556790:intron 35.0%
ATAAGTGAAGTTGAGGGTAA+GGG + chr4_1:55057486-55057505 None:intergenic 35.0%
AATAAGTGAAGTTGAGGGTA+AGG + chr4_1:55057487-55057506 None:intergenic 35.0%
! ATTGAAGTTGACTCTTACGA+CGG + chr4_1:55057564-55057583 None:intergenic 35.0%
ATCACAATTACCAACTGAAG+AGG - chr4_1:55057582-55057601 Msa0556790:intron 35.0%
TCACAATTACCAACTGAAGA+GGG - chr4_1:55057583-55057602 Msa0556790:intron 35.0%
TTCCTGGGTAAGTTATTCTT+GGG + chr4_1:55057637-55057656 None:intergenic 35.0%
ATTCCTGGGTAAGTTATTCT+TGG + chr4_1:55057638-55057657 None:intergenic 35.0%
TTATTCACATGTGAGAAGGT+GGG + chr4_1:55057808-55057827 None:intergenic 35.0%
TTTATTCACATGTGAGAAGG+TGG + chr4_1:55057809-55057828 None:intergenic 35.0%
AAGTTTAGGAATCACATTCC+CGG + chr4_1:55057933-55057952 None:intergenic 35.0%
TGCTGATGATCTAATCCATA+GGG + chr4_1:55057968-55057987 None:intergenic 35.0%
ATGCTGATGATCTAATCCAT+AGG + chr4_1:55057969-55057988 None:intergenic 35.0%
CTAGGAAGAAGAACTGAAAA+AGG - chr4_1:55058198-55058217 Msa0556790:intron 35.0%
AGGAAGAAGAACTGAAAAAG+GGG - chr4_1:55058200-55058219 Msa0556790:intron 35.0%
AGATGCAGATAAGATGATGA+GGG - chr4_1:55058234-55058253 Msa0556790:intron 35.0%
TAGAAACTGAGTATGGGAAA+AGG + chr4_1:55058399-55058418 None:intergenic 35.0%
CTCCAGGAAAAAGTAAATGT+TGG + chr4_1:55058511-55058530 None:intergenic 35.0%
CAAATTAAACACTCTTCTCC+AGG + chr4_1:55058527-55058546 None:intergenic 35.0%
TATTTCAGCAACCATGGTAT+AGG - chr4_1:55058618-55058637 Msa0556790:intron 35.0%
GGATCTCTTATAGGGTAAAT+AGG - chr4_1:55058747-55058766 Msa0556790:intron 35.0%
GAGTAGTTCCTGTATAACAA+AGG - chr4_1:55058853-55058872 Msa0556790:intron 35.0%
! ATAGTCTCCCTTTGTTATAC+AGG + chr4_1:55058864-55058883 None:intergenic 35.0%
! CAATTTTTGCTTATAGCTCG+GGG + chr4_1:55058959-55058978 None:intergenic 35.0%
ATCTACAACACAAAGTTCAG+AGG + chr4_1:55059009-55059028 None:intergenic 35.0%
TGAGAAGGAAAGTTAGTTAG+AGG + chr4_1:55059045-55059064 None:intergenic 35.0%
!!! AGTTTGCCCCTTTTTTATTG+AGG - chr4_1:55059077-55059096 Msa0556790:intron 35.0%
!!! GTTTGCCCCTTTTTTATTGA+GGG - chr4_1:55059078-55059097 Msa0556790:intron 35.0%
CGATTCCCTCAATAAAAAAG+GGG + chr4_1:55059086-55059105 None:intergenic 35.0%
CCGATTCCCTCAATAAAAAA+GGG + chr4_1:55059087-55059106 None:intergenic 35.0%
!!! CCCTTTTTTATTGAGGGAAT+CGG - chr4_1:55059084-55059103 Msa0556790:intron 35.0%
AAATCTGATGGTTTGATGAG+TGG + chr4_1:55059158-55059177 None:intergenic 35.0%
! TTCAAAGTTGGTTTAGGGAA+TGG + chr4_1:55059225-55059244 None:intergenic 35.0%
ACAACCAAGAAGTTCAAAGT+TGG + chr4_1:55059237-55059256 None:intergenic 35.0%
GAACTTCTTGGTTGTAATGA+TGG - chr4_1:55059242-55059261 Msa0556790:intron 35.0%
!! AAACTAAAGAGGCACTAGTT+TGG - chr4_1:55059268-55059287 Msa0556790:intron 35.0%
! CAAACTTGGGAATATTGACT+TGG + chr4_1:55059510-55059529 None:intergenic 35.0%
CCTAATCATCACTCAAACTT+GGG + chr4_1:55059523-55059542 None:intergenic 35.0%
CCAAGTTTGAGTGATGATTA+GGG - chr4_1:55059521-55059540 Msa0556790:intron 35.0%
ATCAAGAACTTACTGATAGG+AGG + chr4_1:55059598-55059617 None:intergenic 35.0%
! CCAATGGGAAATTTTCTTAG+AGG + chr4_1:55059638-55059657 None:intergenic 35.0%
! CCTCTAAGAAAATTTCCCAT+TGG - chr4_1:55059635-55059654 Msa0556790:intron 35.0%
! TAATCTGAAAATGGCTTGGA+TGG + chr4_1:55059667-55059686 None:intergenic 35.0%
AGACTAATCTGAAAATGGCT+TGG + chr4_1:55059671-55059690 None:intergenic 35.0%
GGGATAGACTAATCTGAAAA+TGG + chr4_1:55059676-55059695 None:intergenic 35.0%
! CTGGAAATTATGGTTTTCTC+TGG - chr4_1:55059717-55059736 Msa0556790:intron 35.0%
GTCCACTATAGTTAATCGAT+AGG + chr4_1:55059867-55059886 None:intergenic 35.0%
GACATGTCCTATATAACAGT+TGG - chr4_1:55059884-55059903 Msa0556790:intron 35.0%
GAACAAGCCAACTGTTATAT+AGG + chr4_1:55059894-55059913 None:intergenic 35.0%
!! ATAACAGTTGGCTTGTTCAA+TGG - chr4_1:55059896-55059915 Msa0556790:intron 35.0%
! ATAGATTCGGTTAGAGTTGA+TGG + chr4_1:55059922-55059941 None:intergenic 35.0%
TTTAAAAAGGGTCAATCCGA+AGG + chr4_1:55060098-55060117 None:intergenic 35.0%
AAGTGACAAGACATTGGAAA+GGG + chr4_1:55060239-55060258 None:intergenic 35.0%
AAAGTGACAAGACATTGGAA+AGG + chr4_1:55060240-55060259 None:intergenic 35.0%
GTAACAAAGTGACAAGACAT+TGG + chr4_1:55060245-55060264 None:intergenic 35.0%
!! TGTCTTGTCACTTTGTTACA+AGG - chr4_1:55060246-55060265 Msa0556790:intron 35.0%
GAGAAGCTAGAGTTATAAGT+CGG + chr4_1:55060537-55060556 None:intergenic 35.0%
! CTTATAACTCTAGCTTCTCT+AGG - chr4_1:55060538-55060557 Msa0556790:intron 35.0%
! TGTAACTGATTCTGATTACC+TGG - chr4_1:55060563-55060582 Msa0556790:intron 35.0%
AATTAACAAAACTGAAGGCC+AGG + chr4_1:55060584-55060603 None:intergenic 35.0%
CATCAAAAAGATCAAAGTCC+AGG - chr4_1:55060792-55060811 Msa0556790:intron 35.0%
AAGTCAAAAAGCAAGGATTC+TGG - chr4_1:55060845-55060864 Msa0556790:intron 35.0%
AAAAATTTCGATAGGCGAAC+TGG + chr4_1:55060896-55060915 None:intergenic 35.0%
!!! GTTCGCCTATCGAAATTTTT+TGG - chr4_1:55060896-55060915 Msa0556790:intron 35.0%
!! GTTGATAGTGGTTGAATACT+TGG - chr4_1:55060929-55060948 Msa0556790:intron 35.0%
GATTGATGTAGTGTGAAAAG+GGG - chr4_1:55061090-55061109 Msa0556790:CDS 35.0%
AGGAGCTATTATTTCAGAGT+GGG + chr4_1:55061195-55061214 None:intergenic 35.0%
AAGGAGCTATTATTTCAGAG+TGG + chr4_1:55061196-55061215 None:intergenic 35.0%
! CTCCTTTTCGTGATAACTTT+AGG - chr4_1:55061210-55061229 Msa0556790:five_prime_UTR 35.0%
AGCCTAAAGTTATCACGAAA+AGG + chr4_1:55061215-55061234 None:intergenic 35.0%
TTTAGGCTTATCCAAGAACA+AGG - chr4_1:55061227-55061246 Msa0556790:five_prime_UTR 35.0%
! CCCAAGTATCCTTGATAACT+TGG - chr4_1:55054986-55055005 Msa0556790:intron 40.0%
! ACGGCTTTTCCAAGTTATCA+AGG + chr4_1:55054998-55055017 None:intergenic 40.0%
!!! TTTTGGCGTTTGGGTTGATA+TGG - chr4_1:55055236-55055255 Msa0556790:intron 40.0%
GCTTTATGATGCTCGAATGT+TGG - chr4_1:55055381-55055400 Msa0556790:intron 40.0%
TTCCTGTACCGTTATTGATG+AGG - chr4_1:55055417-55055436 Msa0556790:intron 40.0%
GTTCATTTCATTCACCAGAG+TGG - chr4_1:55055457-55055476 Msa0556790:intron 40.0%
!!! TGTTTTAAGGCTAGCCAAAC+GGG + chr4_1:55055490-55055509 None:intergenic 40.0%
TGTGTACATATGAGAGACAG+AGG - chr4_1:55055609-55055628 Msa0556790:intron 40.0%
GTGTACATATGAGAGACAGA+GGG - chr4_1:55055610-55055629 Msa0556790:intron 40.0%
TGTACATATGAGAGACAGAG+GGG - chr4_1:55055611-55055630 Msa0556790:intron 40.0%
TTCAGGACTGATCAGACATA+TGG + chr4_1:55055891-55055910 None:intergenic 40.0%
CCAAACTTCAGACACAATTC+AGG + chr4_1:55055908-55055927 None:intergenic 40.0%
! CCTGAATTGTGTCTGAAGTT+TGG - chr4_1:55055905-55055924 Msa0556790:intron 40.0%
! GGGTTTGTTTGGTTCAAACA+AGG - chr4_1:55055942-55055961 Msa0556790:intron 40.0%
AAACTGCGTTCTTACAACCA+TGG + chr4_1:55056251-55056270 None:intergenic 40.0%
TCTTGCAGTGTAACAATCGT+CGG + chr4_1:55056330-55056349 None:intergenic 40.0%
!! GAGAAAGTCTTGTTGTGTGA+CGG - chr4_1:55056389-55056408 Msa0556790:intron 40.0%
!! AGAAAGTCTTGTTGTGTGAC+GGG - chr4_1:55056390-55056409 Msa0556790:intron 40.0%
TTAAGAGGAGTTGAGGCAAA+GGG + chr4_1:55056476-55056495 None:intergenic 40.0%
ATTAAGAGGAGTTGAGGCAA+AGG + chr4_1:55056477-55056496 None:intergenic 40.0%
!! GGGAGTGTCAATTGATTAAG+AGG + chr4_1:55056491-55056510 None:intergenic 40.0%
AAGGATCAAGTAGAGAGAAG+GGG + chr4_1:55056511-55056530 None:intergenic 40.0%
CAAGGATCAAGTAGAGAGAA+GGG + chr4_1:55056512-55056531 None:intergenic 40.0%
ACAAGGATCAAGTAGAGAGA+AGG + chr4_1:55056513-55056532 None:intergenic 40.0%
AGAACAAGTCTGAGAATGAG+AGG + chr4_1:55056553-55056572 None:intergenic 40.0%
! TCTCATTCTCAGACTTGTTC+TGG - chr4_1:55056552-55056571 Msa0556790:intron 40.0%
! CTCATTCTCAGACTTGTTCT+GGG - chr4_1:55056553-55056572 Msa0556790:intron 40.0%
TACAATCAAGAGACGAAGAG+AGG - chr4_1:55056990-55057009 Msa0556790:intron 40.0%
GAAGAGAGGAGAACAAAGAT+GGG - chr4_1:55057004-55057023 Msa0556790:intron 40.0%
TGAGATGTGAAGAGAAGAGA+TGG - chr4_1:55057046-55057065 Msa0556790:intron 40.0%
GAGATGTGAAGAGAAGAGAT+GGG - chr4_1:55057047-55057066 Msa0556790:intron 40.0%
AGAGATGATGAGATGAGAAG+AGG - chr4_1:55057081-55057100 Msa0556790:intron 40.0%
CTGCAAACACAACTTCTTCA+TGG + chr4_1:55057129-55057148 None:intergenic 40.0%
TGTGTTTGCAGCTGTGTATT+TGG - chr4_1:55057138-55057157 Msa0556790:CDS 40.0%
!! AGCTGTGTATTTGGTTCTGA+TGG - chr4_1:55057147-55057166 Msa0556790:CDS 40.0%
! TTGAAGTTGACTCTTACGAC+GGG + chr4_1:55057563-55057582 None:intergenic 40.0%
TTCCCAAGAATAACTTACCC+AGG - chr4_1:55057632-55057651 Msa0556790:intron 40.0%
TATTCACATGTGAGAAGGTG+GGG + chr4_1:55057807-55057826 None:intergenic 40.0%
GGGTATAGTCATTCACTTAC+CGG - chr4_1:55057911-55057930 Msa0556790:intron 40.0%
GGTATAGTCATTCACTTACC+GGG - chr4_1:55057912-55057931 Msa0556790:intron 40.0%
CTGATGATCTAATCCATAGG+GGG + chr4_1:55057966-55057985 None:intergenic 40.0%
GCTGATGATCTAATCCATAG+GGG + chr4_1:55057967-55057986 None:intergenic 40.0%
GGAAGAAGAACTGAAAAAGG+GGG - chr4_1:55058201-55058220 Msa0556790:intron 40.0%
CAGATGCAGATAAGATGATG+AGG - chr4_1:55058233-55058252 Msa0556790:intron 40.0%
! ATAAGATGATGAGGGAGTAC+AGG - chr4_1:55058242-55058261 Msa0556790:intron 40.0%
! TAAGATGATGAGGGAGTACA+GGG - chr4_1:55058243-55058262 Msa0556790:intron 40.0%
ACTAGAGTGATTTCTACCCT+GGG + chr4_1:55058302-55058321 None:intergenic 40.0%
TACTAGAGTGATTTCTACCC+TGG + chr4_1:55058303-55058322 None:intergenic 40.0%
GCATAGCAGCAGAAAAAGAA+AGG - chr4_1:55058474-55058493 Msa0556790:intron 40.0%
ATTATGCAACTATGCTCTGC+TGG - chr4_1:55058580-55058599 Msa0556790:intron 40.0%
CCATAACTAGTCCTATACCA+TGG + chr4_1:55058632-55058651 None:intergenic 40.0%
!! CCATGGTATAGGACTAGTTA+TGG - chr4_1:55058629-55058648 Msa0556790:intron 40.0%
GAAAGTCGCTGACAAATTAG+AGG + chr4_1:55058790-55058809 None:intergenic 40.0%
! GGAACTACTCCTGTCATTTA+TGG + chr4_1:55058843-55058862 None:intergenic 40.0%
CCATAGGAATTTACCTTGCA+GGG + chr4_1:55058936-55058955 None:intergenic 40.0%
ACAAAGTTCAGAGGCAAGAA+GGG + chr4_1:55059000-55059019 None:intergenic 40.0%
! GCCGATTCCCTCAATAAAAA+AGG + chr4_1:55059088-55059107 None:intergenic 40.0%
CCCTAATGGTCTACTTATGT+GGG + chr4_1:55059110-55059129 None:intergenic 40.0%
CCCACATAAGTAGACCATTA+GGG - chr4_1:55059107-55059126 Msa0556790:intron 40.0%
AAGATGAAATCAATGTGGGC+TGG + chr4_1:55059183-55059202 None:intergenic 40.0%
TAGCTCCTCTATCAATGAGT+GGG - chr4_1:55059309-55059328 Msa0556790:intron 40.0%
CTTTACATATGGCCTCTTCA+AGG + chr4_1:55059373-55059392 None:intergenic 40.0%
! AGAGGTGCACTCTTTACATA+TGG + chr4_1:55059384-55059403 None:intergenic 40.0%
! TATGTAAAGAGTGCACCTCT+TGG - chr4_1:55059384-55059403 Msa0556790:intron 40.0%
CAGTGTAATGAATGTCCAAG+AGG + chr4_1:55059402-55059421 None:intergenic 40.0%
!! ATTGACTTGGGAAAGGATGA+GGG + chr4_1:55059497-55059516 None:intergenic 40.0%
!! TATTGACTTGGGAAAGGATG+AGG + chr4_1:55059498-55059517 None:intergenic 40.0%
!! TGGGAATATTGACTTGGGAA+AGG + chr4_1:55059504-55059523 None:intergenic 40.0%
CCCAAGTTTGAGTGATGATT+AGG - chr4_1:55059520-55059539 Msa0556790:intron 40.0%
CCCTAATCATCACTCAAACT+TGG + chr4_1:55059524-55059543 None:intergenic 40.0%
ACTTACTGATAGGAGGAATG+AGG + chr4_1:55059591-55059610 None:intergenic 40.0%
! TTATGGTTTTCTCTGGACGT+AGG - chr4_1:55059724-55059743 Msa0556790:intron 40.0%
! TATGGTTTTCTCTGGACGTA+GGG - chr4_1:55059725-55059744 Msa0556790:intron 40.0%
TAGAATGTGGGAATATCCCA+TGG - chr4_1:55059782-55059801 Msa0556790:intron 40.0%
GAGGATCGAAGGAATAGATT+CGG + chr4_1:55059935-55059954 None:intergenic 40.0%
!!! TCTTTTGTTGCTTTGAGGTC+TGG - chr4_1:55060147-55060166 Msa0556790:CDS 40.0%
!! TGTCACTTTGTTACAAGGTC+TGG - chr4_1:55060251-55060270 Msa0556790:intron 40.0%
GTTACAAGGTCTGGAAGAAA+CGG - chr4_1:55060260-55060279 Msa0556790:intron 40.0%
GGGAACGATAATAGGACAAA+AGG + chr4_1:55060405-55060424 None:intergenic 40.0%
GATCTTCTTGAATGCTGCAA+TGG + chr4_1:55060710-55060729 None:intergenic 40.0%
AGAGTATGAGGATGATGAAG+AGG + chr4_1:55060747-55060766 None:intergenic 40.0%
! TTCACTACTGGAAGAGTATG+AGG + chr4_1:55060759-55060778 None:intergenic 40.0%
GAAGCACAAGTCAAAAAGCA+AGG - chr4_1:55060838-55060857 Msa0556790:intron 40.0%
ATCGAATCAGGGTCTAACTG+TGG - chr4_1:55054415-55054434 Msa0556790:three_prime_UTR 45.0%
ACAAAGCTATGCAGAGAGCA+AGG - chr4_1:55054513-55054532 Msa0556790:three_prime_UTR 45.0%
ATGCCATCTTCAACCTCATC+GGG + chr4_1:55054560-55054579 None:intergenic 45.0%
CATGCCATCTTCAACCTCAT+CGG + chr4_1:55054561-55054580 None:intergenic 45.0%
TACTTGGGGCCTATTTGGAT+TGG + chr4_1:55054974-55054993 None:intergenic 45.0%
AAGGATACTTGGGGCCTATT+TGG + chr4_1:55054979-55054998 None:intergenic 45.0%
GTCCTCATCAATAACGGTAC+AGG + chr4_1:55055422-55055441 None:intergenic 45.0%
GCGACAGTCCTCATCAATAA+CGG + chr4_1:55055428-55055447 None:intergenic 45.0%
TTATTGATGAGGACTGTCGC+AGG - chr4_1:55055428-55055447 Msa0556790:intron 45.0%
GTACAAACCCAACAATGACC+TGG + chr4_1:55055730-55055749 None:intergenic 45.0%
GATCAGACATATGGAGCAGA+GGG + chr4_1:55055882-55055901 None:intergenic 45.0%
TGATCAGACATATGGAGCAG+AGG + chr4_1:55055883-55055902 None:intergenic 45.0%
! TGTTTGGTTCAAACAAGGGG+AGG - chr4_1:55055947-55055966 Msa0556790:intron 45.0%
! GTTTGGTTCAAACAAGGGGA+GGG - chr4_1:55055948-55055967 Msa0556790:intron 45.0%
! TTTGGTTCAAACAAGGGGAG+GGG - chr4_1:55055949-55055968 Msa0556790:intron 45.0%
! AACAGGTAAGTTTTGCGAGG+AGG + chr4_1:55056094-55056113 None:intergenic 45.0%
!! AAAGGGGGTAAAGGTGTTTC+AGG + chr4_1:55056459-55056478 None:intergenic 45.0%
TAAGAGGAGTTGAGGCAAAG+GGG + chr4_1:55056475-55056494 None:intergenic 45.0%
GTCTGAGAATGAGAGGTTGA+GGG + chr4_1:55056546-55056565 None:intergenic 45.0%
AGTCTGAGAATGAGAGGTTG+AGG + chr4_1:55056547-55056566 None:intergenic 45.0%
CTGTTGTCAAAGCGGAAATG+CGG - chr4_1:55056632-55056651 Msa0556790:intron 45.0%
!! GCTTTGGAGGCTTAAAGTGT+TGG + chr4_1:55056877-55056896 None:intergenic 45.0%
CGAAGAGAGGAGAACAAAGA+TGG - chr4_1:55057003-55057022 Msa0556790:intron 45.0%
GATGAGATGAGAAGAGGAGA+TGG - chr4_1:55057087-55057106 Msa0556790:intron 45.0%
TTTGGAGAAAGCGGTTGAAG+CGG + chr4_1:55057287-55057306 None:intergenic 45.0%
TTTCTCCAAACGCTCTACCT+TGG - chr4_1:55057297-55057316 Msa0556790:CDS 45.0%
ATTAAGCGCTTGTCGAAAGG+TGG - chr4_1:55057451-55057470 Msa0556790:intron 45.0%
AAACAAACGCCCTCTTCAGT+TGG + chr4_1:55057595-55057614 None:intergenic 45.0%
ATGGGAAGTTATCCCATTCC+AGG - chr4_1:55057841-55057860 Msa0556790:intron 45.0%
TGGGAAGTTATCCCATTCCA+GGG - chr4_1:55057842-55057861 Msa0556790:intron 45.0%
GAGTAAAGGTTCCCTGGAAT+GGG + chr4_1:55057856-55057875 None:intergenic 45.0%
!! GGGGCGTTTCTTTCAAGTTT+AGG + chr4_1:55057947-55057966 None:intergenic 45.0%
CCCTGCAAGGTAAATTCCTA+TGG - chr4_1:55058933-55058952 Msa0556790:intron 45.0%
GCCATAGGAATTTACCTTGC+AGG + chr4_1:55058937-55058956 None:intergenic 45.0%
CAAAGTTCAGAGGCAAGAAG+GGG + chr4_1:55058999-55059018 None:intergenic 45.0%
CACAAAGTTCAGAGGCAAGA+AGG + chr4_1:55059001-55059020 None:intergenic 45.0%
GCCCACATAAGTAGACCATT+AGG - chr4_1:55059106-55059125 Msa0556790:intron 45.0%
GCCCTAATGGTCTACTTATG+TGG + chr4_1:55059111-55059130 None:intergenic 45.0%
AGAGCTTCATAAGGCCCTAA+TGG + chr4_1:55059124-55059143 None:intergenic 45.0%
!! CTAAAGAGGCACTAGTTTGG+CGG - chr4_1:55059271-55059290 Msa0556790:intron 45.0%
CTAGCTCCTCTATCAATGAG+TGG - chr4_1:55059308-55059327 Msa0556790:intron 45.0%
GGATACCCACTCATTGATAG+AGG + chr4_1:55059317-55059336 None:intergenic 45.0%
AATTGCTGACAACGACTCCT+TGG - chr4_1:55059459-55059478 Msa0556790:intron 45.0%
ATTGCTGACAACGACTCCTT+GGG - chr4_1:55059460-55059479 Msa0556790:intron 45.0%
AAAGGATGAGGGAGAATGAC+AGG + chr4_1:55059486-55059505 None:intergenic 45.0%
!! GTGATGATTAGGGCACTGAT+TGG - chr4_1:55059531-55059550 Msa0556790:intron 45.0%
CTTGGATGGAAGGAACCAAT+GGG + chr4_1:55059653-55059672 None:intergenic 45.0%
! CTGAAAATGGCTTGGATGGA+AGG + chr4_1:55059663-55059682 None:intergenic 45.0%
CATAATTTCCAGCCCCAACA+AGG + chr4_1:55059709-55059728 None:intergenic 45.0%
CTTGTTGGGGCTGGAAATTA+TGG - chr4_1:55059707-55059726 Msa0556790:intron 45.0%
TTGCCATGCGACTAGAATGT+GGG - chr4_1:55059770-55059789 Msa0556790:intron 45.0%
ATTCCCACATTCTAGTCGCA+TGG + chr4_1:55059776-55059795 None:intergenic 45.0%
AGAGTTCACCAACTTGGCAA+GGG + chr4_1:55059819-55059838 None:intergenic 45.0%
AAGAGTTCACCAACTTGGCA+AGG + chr4_1:55059820-55059839 None:intergenic 45.0%
!! TTGCCAAGTTGGTGAACTCT+TGG - chr4_1:55059819-55059838 Msa0556790:intron 45.0%
!! TGCCAAGTTGGTGAACTCTT+GGG - chr4_1:55059820-55059839 Msa0556790:intron 45.0%
TACCCAAGAGTTCACCAACT+TGG + chr4_1:55059825-55059844 None:intergenic 45.0%
TAGTACAAGGGGCTCTTTCT+CGG + chr4_1:55059957-55059976 None:intergenic 45.0%
ATGCCCGATGACTAGTACAA+GGG + chr4_1:55059969-55059988 None:intergenic 45.0%
AATCCGAAGGACCTTGGATT+GGG + chr4_1:55060085-55060104 None:intergenic 45.0%
TTGAGGTCTGGAAGAAATCG+AGG - chr4_1:55060159-55060178 Msa0556790:intron 45.0%
CTTGAATGCTGCAATGGAAG+AGG + chr4_1:55060704-55060723 None:intergenic 45.0%
GATGATGAAGAGGAGCTAGA+TGG + chr4_1:55060737-55060756 None:intergenic 45.0%
TCTCTCTTCGTCTTCACTAC+TGG + chr4_1:55060771-55060790 None:intergenic 45.0%
GATCAAAGTCCAGGTCTAAG+CGG - chr4_1:55060801-55060820 Msa0556790:intron 45.0%
! TCTGGAACCGATAGTGAAGA+TGG - chr4_1:55060863-55060882 Msa0556790:intron 45.0%
!! GGGACATCAAGAGTTGATAG+TGG - chr4_1:55060917-55060936 Msa0556790:intron 45.0%
GCTTATCCAAGAACAAGGTC+TGG - chr4_1:55061232-55061251 Msa0556790:five_prime_UTR 45.0%
TCATAGCCAGACCTTGTTCT+TGG + chr4_1:55061241-55061260 None:intergenic 45.0%
!!! TATTTTTTTTTTTAAATGTT+TGG - chr4_1:55057687-55057706 Msa0556790:intron 5.0%
!!! TTTTTTTTTTTTATATTACT+CGG + chr4_1:55061295-55061314 None:intergenic 5.0%
TTGCAATGTGCGAACGTAGC+TGG + chr4_1:55054354-55054373 None:intergenic 50.0%
GAATCAGGGTCTAACTGTGG+TGG - chr4_1:55054418-55054437 Msa0556790:three_prime_UTR 50.0%
CGATGAGGTTGAAGATGGCA+TGG - chr4_1:55054559-55054578 Msa0556790:three_prime_UTR 50.0%
TGAGAGACAGAGGGGAGATA+TGG - chr4_1:55055619-55055638 Msa0556790:intron 50.0%
CATATGGAGCAGAGGGCAAA+TGG + chr4_1:55055875-55055894 None:intergenic 50.0%
! AAGTTTTGCGAGGAGGAGAG+AGG + chr4_1:55056087-55056106 None:intergenic 50.0%
CAGTGTAACAATCGTCGGCA+TGG + chr4_1:55056325-55056344 None:intergenic 50.0%
AGTTGAGGCAAAGGGGGTAA+AGG + chr4_1:55056468-55056487 None:intergenic 50.0%
AAGAGGAGTTGAGGCAAAGG+GGG + chr4_1:55056474-55056493 None:intergenic 50.0%
!! TTGAGGGCATCTGTGTCACA+AGG + chr4_1:55056530-55056549 None:intergenic 50.0%
CACACACAGAGATCAAGAGG+AGG + chr4_1:55056597-55056616 None:intergenic 50.0%
ACGCACACACAGAGATCAAG+AGG + chr4_1:55056600-55056619 None:intergenic 50.0%
GGTGCACTCTGTTGTCAAAG+CGG - chr4_1:55056624-55056643 Msa0556790:intron 50.0%
CTACGCGTCAATTTCTTGGG+TGG + chr4_1:55056663-55056682 None:intergenic 50.0%
CCGCTACGCGTCAATTTCTT+GGG + chr4_1:55056666-55056685 None:intergenic 50.0%
CCCAAGAAATTGACGCGTAG+CGG - chr4_1:55056663-55056682 Msa0556790:intron 50.0%
CCAAGAAATTGACGCGTAGC+GGG - chr4_1:55056664-55056683 Msa0556790:intron 50.0%
TTGGAGAAAGCGGTTGAAGC+GGG + chr4_1:55057286-55057305 None:intergenic 50.0%
! GGTAGAGCGTTTGGAGAAAG+CGG + chr4_1:55057296-55057315 None:intergenic 50.0%
!!! GCGTCGCGTTTTACTGGTTT+TGG - chr4_1:55057326-55057345 Msa0556790:CDS 50.0%
TTGTCAATAGCAGCCGCTAC+CGG + chr4_1:55057368-55057387 None:intergenic 50.0%
GCTGCTATTGACAACAGAGG+TGG - chr4_1:55057374-55057393 Msa0556790:CDS 50.0%
TGAAGTTGAGGGTAAGGGCA+GGG + chr4_1:55057481-55057500 None:intergenic 50.0%
! AGTTGACTCTTACGACGGGA+AGG + chr4_1:55057559-55057578 None:intergenic 50.0%
GGAGTAAAGGTTCCCTGGAA+TGG + chr4_1:55057857-55057876 None:intergenic 50.0%
TCTTGGGAGTAAAGGTTCCC+TGG + chr4_1:55057862-55057881 None:intergenic 50.0%
CTTGAAAGAAACGCCCCCTA+TGG - chr4_1:55057950-55057969 Msa0556790:intron 50.0%
AGAACTGAAAAAGGGGGAGC+TGG - chr4_1:55058207-55058226 Msa0556790:intron 50.0%
GGGCTCAACTAGATGCTGAA+AGG - chr4_1:55058263-55058282 Msa0556790:intron 50.0%
AAGAGCAAATGCTCCCTGCA+AGG - chr4_1:55058920-55058939 Msa0556790:intron 50.0%
!! TGTGGGCTGGACAAATCTGA+TGG + chr4_1:55059170-55059189 None:intergenic 50.0%
! GACTTGGAAGGATGACTTGG+AGG + chr4_1:55059338-55059357 None:intergenic 50.0%
GTGGACTTGGAAGGATGACT+TGG + chr4_1:55059341-55059360 None:intergenic 50.0%
! ACAGTGAAGGTGGACTTGGA+AGG + chr4_1:55059350-55059369 None:intergenic 50.0%
! AAGGACAGTGAAGGTGGACT+TGG + chr4_1:55059354-55059373 None:intergenic 50.0%
CTCTTCAAGGACAGTGAAGG+TGG + chr4_1:55059360-55059379 None:intergenic 50.0%
CACCTTCACTGTCCTTGAAG+AGG - chr4_1:55059358-55059377 Msa0556790:intron 50.0%
!! GATTAGGGCACTGATTGGTG+AGG - chr4_1:55059536-55059555 Msa0556790:intron 50.0%
GCTTGGATGGAAGGAACCAA+TGG + chr4_1:55059654-55059673 None:intergenic 50.0%
TCCCTGATGTTCCTCCTTGT+TGG - chr4_1:55059692-55059711 Msa0556790:intron 50.0%
CCCAACAAGGAGGAACATCA+GGG + chr4_1:55059696-55059715 None:intergenic 50.0%
CCCTGATGTTCCTCCTTGTT+GGG - chr4_1:55059693-55059712 Msa0556790:intron 50.0%
CCTGATGTTCCTCCTTGTTG+GGG - chr4_1:55059694-55059713 Msa0556790:intron 50.0%
AATTTCCAGCCCCAACAAGG+AGG + chr4_1:55059706-55059725 None:intergenic 50.0%
GTTGCCATGCGACTAGAATG+TGG - chr4_1:55059769-55059788 Msa0556790:intron 50.0%
! AAGGGCATGGCAACTACCAT+GGG + chr4_1:55059801-55059820 None:intergenic 50.0%
GAGCCCCTTGTACTAGTCAT+CGG - chr4_1:55059962-55059981 Msa0556790:intron 50.0%
AGCCCCTTGTACTAGTCATC+GGG - chr4_1:55059963-55059982 Msa0556790:intron 50.0%
TGCCCGATGACTAGTACAAG+GGG + chr4_1:55059968-55059987 None:intergenic 50.0%
CATGCCCGATGACTAGTACA+AGG + chr4_1:55059970-55059989 None:intergenic 50.0%
CTTGTACTAGTCATCGGGCA+TGG - chr4_1:55059968-55059987 Msa0556790:intron 50.0%
TACTAGTCATCGGGCATGGA+TGG - chr4_1:55059972-55059991 Msa0556790:intron 50.0%
!! GGGCATGGATGGATTTTGAG+TGG - chr4_1:55059983-55060002 Msa0556790:intron 50.0%
TTCACTACACAGTTCCGCCT+TGG - chr4_1:55060011-55060030 Msa0556790:intron 50.0%
! GGGATGGAGACTGTCATTTC+AGG + chr4_1:55060065-55060084 None:intergenic 50.0%
ACAGTCTCCATCCCAATCCA+AGG - chr4_1:55060071-55060090 Msa0556790:CDS 50.0%
CATCCCAATCCAAGGTCCTT+CGG - chr4_1:55060079-55060098 Msa0556790:CDS 50.0%
CAATCCGAAGGACCTTGGAT+TGG + chr4_1:55060086-55060105 None:intergenic 50.0%
ACAAGGTCTGGAAGAAACGG+AGG - chr4_1:55060263-55060282 Msa0556790:intron 50.0%
CTTCTTTGACCGCTTAGACC+TGG + chr4_1:55060813-55060832 None:intergenic 50.0%
CAGGTCTAAGCGGTCAAAGA+AGG - chr4_1:55060811-55060830 Msa0556790:intron 50.0%
GGAACCGATAGTGAAGATGG+TGG - chr4_1:55060866-55060885 Msa0556790:intron 50.0%
! ACCGATAGTGAAGATGGTGG+CGG - chr4_1:55060869-55060888 Msa0556790:intron 50.0%
TCCGCCACCATCTTCACTAT+CGG + chr4_1:55060873-55060892 None:intergenic 50.0%
GCTATGCAGAGAGCAAGGCT+CGG - chr4_1:55054518-55054537 Msa0556790:three_prime_UTR 55.0%
TTCAACCTCATCGGGACCAC+CGG + chr4_1:55054552-55054571 None:intergenic 55.0%
GGTCCCGATGAGGTTGAAGA+TGG - chr4_1:55054554-55054573 Msa0556790:three_prime_UTR 55.0%
TTGATGAGGACTGTCGCAGG+TGG - chr4_1:55055431-55055450 Msa0556790:intron 55.0%
!! TGTTGTGTGACGGGTTGAGC+TGG - chr4_1:55056399-55056418 Msa0556790:intron 55.0%
!! GTTGTGTGACGGGTTGAGCT+GGG - chr4_1:55056400-55056419 Msa0556790:intron 55.0%
GTTGAGCTGGGTGATCGATG+TGG - chr4_1:55056412-55056431 Msa0556790:intron 55.0%
GATCTCTGTGTGTGCGTGTG+TGG - chr4_1:55056603-55056622 Msa0556790:intron 55.0%
CCCGCTACGCGTCAATTTCT+TGG + chr4_1:55056667-55056686 None:intergenic 55.0%
TATAAAGCGGGCGCGATTGC+AGG + chr4_1:55057251-55057270 None:intergenic 55.0%
CGCGATTGCGGGTATAAAGC+GGG + chr4_1:55057263-55057282 None:intergenic 55.0%
GCGCGATTGCGGGTATAAAG+CGG + chr4_1:55057264-55057283 None:intergenic 55.0%
GCGGCTGCTATTGACAACAG+AGG - chr4_1:55057371-55057390 Msa0556790:CDS 55.0%
GTGAAGTTGAGGGTAAGGGC+AGG + chr4_1:55057482-55057501 None:intergenic 55.0%
TGCTTATAGCTCGGGGCCAT+AGG + chr4_1:55058952-55058971 None:intergenic 55.0%
GGCCTCTTCAAGGACAGTGA+AGG + chr4_1:55059363-55059382 None:intergenic 55.0%
CCCCAACAAGGAGGAACATC+AGG + chr4_1:55059697-55059716 None:intergenic 55.0%
ATGTTCCTCCTTGTTGGGGC+TGG - chr4_1:55059698-55059717 Msa0556790:intron 55.0%
! CAAGGGCATGGCAACTACCA+TGG + chr4_1:55059802-55059821 None:intergenic 55.0%
TTGCCATGCCCTTGCCAAGT+TGG - chr4_1:55059808-55059827 Msa0556790:intron 55.0%
TCACCAACTTGGCAAGGGCA+TGG + chr4_1:55059814-55059833 None:intergenic 55.0%
GCTCTTTCTCGGAGGATCGA+AGG + chr4_1:55059946-55059965 None:intergenic 55.0%
TACAAGGGGCTCTTTCTCGG+AGG + chr4_1:55059954-55059973 None:intergenic 55.0%
! CGAAGGACCTTGGATTGGGA+TGG + chr4_1:55060081-55060100 None:intergenic 55.0%
AGGGTCAATCCGAAGGACCT+TGG + chr4_1:55060091-55060110 None:intergenic 55.0%
ATGCAGAGAGCAAGGCTCGG+TGG - chr4_1:55054521-55054540 Msa0556790:three_prime_UTR 60.0%
TGAGGACTGTCGCAGGTGGA+TGG - chr4_1:55055435-55055454 Msa0556790:intron 60.0%
AAACGGGCAGCATGCCACTC+TGG + chr4_1:55055474-55055493 None:intergenic 60.0%
AGAGTGGCATGCTGCCCGTT+TGG - chr4_1:55055473-55055492 Msa0556790:intron 60.0%
GTCAAAGCGGAAATGCGGCG+CGG - chr4_1:55056637-55056656 Msa0556790:intron 60.0%
!!! ACGCGTAGCGGGCGCTATTT+TGG - chr4_1:55056675-55056694 Msa0556790:intron 60.0%
!!! CGTAGCGGGCGCTATTTTGG+TGG - chr4_1:55056678-55056697 Msa0556790:intron 60.0%
GGCGCGATTGCAGGTCAAAG+CGG + chr4_1:55057242-55057261 None:intergenic 60.0%
! GCGCTCCAAGGTAGAGCGTT+TGG + chr4_1:55057305-55057324 None:intergenic 60.0%
! AGCGCTGCGTCGCGTTTTAC+TGG - chr4_1:55057320-55057339 Msa0556790:CDS 60.0%
GGTGGGGTTGTGCATTCCCA+TGG + chr4_1:55057791-55057810 None:intergenic 60.0%
GAGGGAGAATGACAGGCCCA+AGG + chr4_1:55059479-55059498 None:intergenic 60.0%
!! GCAAGGCTCGGTGGTGCTTC+CGG - chr4_1:55054530-55054549 Msa0556790:three_prime_UTR 65.0%
TGCTTCCGGTGGTCCCGATG+AGG - chr4_1:55054544-55054563 Msa0556790:three_prime_UTR 65.0%
!!! CGGGCGCTATTTTGGTGGCG+CGG - chr4_1:55056683-55056702 Msa0556790:intron 65.0%
GTTGAAGCGGGCGCGATTGC+GGG + chr4_1:55057274-55057293 None:intergenic 65.0%
GGTTGAAGCGGGCGCGATTG+CGG + chr4_1:55057275-55057294 None:intergenic 65.0%
AAACGCGACGCAGCGCTCCA+AGG + chr4_1:55057317-55057336 None:intergenic 65.0%
!! AGGCTCGGTGGTGCTTCCGG+TGG - chr4_1:55054533-55054552 Msa0556790:three_prime_UTR 70.0%
AGCCGCTACCGGCGCTATCG+CGG + chr4_1:55057357-55057376 None:intergenic 70.0%
CTACCGGCGCTATCGCGGCG+CGG + chr4_1:55057352-55057371 None:intergenic 75.0%
!! CGCCGCGATAGCGCCGGTAG+CGG - chr4_1:55057352-55057371 Msa0556790:CDS 75.0%
! TGGCCGCGCCGCGATAGCGC+CGG - chr4_1:55057346-55057365 Msa0556790:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55054287 55061329 55054287 ID=Msa0556790;Name=Msa0556790
chr4_1 mRNA 55054287 55061329 55054287 ID=Msa0556790-mRNA-1;Parent=Msa0556790;Name=Msa0556790-mRNA-1;_AED=0.16;_eAED=0.16;_QI=207|1|1|1|1|1|5|386|201
chr4_1 exon 55054287 55054900 55054287 ID=Msa0556790-mRNA-1:exon:16414;Parent=Msa0556790-mRNA-1
chr4_1 exon 55057121 55057167 55057121 ID=Msa0556790-mRNA-1:exon:16413;Parent=Msa0556790-mRNA-1
chr4_1 exon 55057273 55057414 55057273 ID=Msa0556790-mRNA-1:exon:16412;Parent=Msa0556790-mRNA-1
chr4_1 exon 55060065 55060166 55060065 ID=Msa0556790-mRNA-1:exon:16411;Parent=Msa0556790-mRNA-1
chr4_1 exon 55061036 55061329 55061036 ID=Msa0556790-mRNA-1:exon:16410;Parent=Msa0556790-mRNA-1
chr4_1 five_prime_UTR 55061123 55061329 55061123 ID=Msa0556790-mRNA-1:five_prime_utr;Parent=Msa0556790-mRNA-1
chr4_1 CDS 55061036 55061122 55061036 ID=Msa0556790-mRNA-1:cds;Parent=Msa0556790-mRNA-1
chr4_1 CDS 55060065 55060166 55060065 ID=Msa0556790-mRNA-1:cds;Parent=Msa0556790-mRNA-1
chr4_1 CDS 55057273 55057414 55057273 ID=Msa0556790-mRNA-1:cds;Parent=Msa0556790-mRNA-1
chr4_1 CDS 55057121 55057167 55057121 ID=Msa0556790-mRNA-1:cds;Parent=Msa0556790-mRNA-1
chr4_1 CDS 55054673 55054900 55054673 ID=Msa0556790-mRNA-1:cds;Parent=Msa0556790-mRNA-1
chr4_1 three_prime_UTR 55054287 55054672 55054287 ID=Msa0556790-mRNA-1:three_prime_utr;Parent=Msa0556790-mRNA-1
Gene Sequence

>Msa0556790

ATGGGGAAAAATCAAGCATACAAAGCTATGCAGAGAGCAAGGCTCGGTGGTGCTTCCGGTGGTCCCGATGAGGTTGAAGATGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCCCGTTTGGCTAGCCTTAAAACATCTCACACAATTACCTGGGAAGAGTACAAAAAGAAACAAAAGGAAGAAGAACTGAAAAAGGGGGAGCTGGAAGCAGATGCAGATAAGATGATGAGGGAGTACAGGGCTCAACTAGATGCTGAAAGGGCTCGCAAACTTTCCCAGGGTAGAAATCACTCTAGTAGTAAGTCTAAACATTCAAAAGACAAGAGGGACAAAATTTCAAAGAAGCATAGCAGCAGAAAAAGAAAGCATTCAAGAAGATCTTCTCCATCTAGCTCCTCTTCATCATCCTCATACTCTTCCAGTAGTGAAGACGAAGAGAGATCATCAAAAAGATCAAAGTCCAGGTCTAAGCGGTCAAAGAAGGAAAAGAAGCACAAGTCAAAAAGCAAGGATTCTGGAACCGATAGTGAAGATGGTGGCGGACCAGTTCGCCTATCGAAATTTTTTGGGACATCAAGAGTTGATAGTGGTTGA

Protein sequence

>Msa0556790

MGKNQAYKAMQRARLGGASGGPDEVEDGMVDGSFHSPEWHAARLASLKTSHTITWEEYKKKQKEEELKKGELEADADKMMREYRAQLDAERARKLSQGRNHSSSKSKHSKDKRDKISKKHSSRKRKHSRRSSPSSSSSSSSYSSSSEDEERSSKRSKSRSKRSKKEKKHKSKSKDSGTDSEDGGGPVRLSKFFGTSRVDSG*