AlfalfaGEDB | Msa0021960

M. sativa cultivar zhongmu-4 / Msa0021960

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021960	sp\|Q9SVY1\|ZWIP2_ARATH	58.722	407	121	8	1	384	1	383	5.55e-142	411

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification
Msa0021960	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0021960	0.800661	1.298244e-48	-8.615850e-47
Msa0017510	Msa0021960	0.803103	4.089046e-49	-8.615850e-47
Msa0021960	Msa0024550	0.824599	7.398281e-54	-8.615850e-47
Msa0021960	Msa0120400	0.819266	1.271387e-52	-8.615850e-47
Msa0021960	Msa0157290	0.803519	3.354500e-49	-8.615850e-47
Msa0021960	Msa0211140	0.811907	5.536612e-51	-8.615850e-47
Msa0021960	Msa0221290	0.809731	1.636641e-50	-8.615850e-47
Msa0021960	Msa0225100	0.800375	1.484761e-48	-8.615850e-47
Msa0021960	Msa0261340	0.802311	5.958669e-49	-8.615850e-47
Msa0021960	Msa0265850	0.800485	1.409534e-48	-8.615850e-47
Msa0021960	Msa0287740	0.802327	5.914692e-49	-8.615850e-47
Msa0021960	Msa0305700	0.804888	1.739821e-49	-8.615850e-47
Msa0021960	Msa0360210	0.800838	1.194194e-48	-8.615850e-47
Msa0021960	Msa0363070	0.807307	5.387665e-50	-8.615850e-47
Msa0021960	Msa0363200	0.809805	1.578038e-50	-8.615850e-47
Msa0021960	Msa0410650	0.818190	2.230214e-52	-8.615850e-47
Msa0021960	Msa0464680	0.803698	3.078391e-49	-8.615850e-47
Msa0021960	Msa0467430	0.804518	2.079158e-49	-8.615850e-47
Msa0021960	Msa0498060	0.818640	1.763999e-52	-8.615850e-47
Msa0021960	Msa0507680	0.811326	7.402692e-51	-8.615850e-47
Msa0021960	Msa0762970	0.803445	3.473829e-49	-8.615850e-47
Msa0021960	Msa0769180	0.802683	4.994722e-49	-8.615850e-47
Msa0021960	Msa0828560	0.819405	1.181636e-52	-8.615850e-47
Msa0021960	Msa0861510	0.802655	5.061252e-49	-8.615850e-47
Msa0021960	Msa0967380	0.838402	2.937410e-57	-8.615850e-47
Msa0021960	Msa0967870	0.809526	1.811529e-50	-8.615850e-47
Msa0021960	Msa1043370	0.801065	1.073437e-48	-8.615850e-47
Msa0021960	Msa1085200	0.815633	8.364531e-52	-8.615850e-47
Msa0021960	Msa1228200	0.801790	7.624698e-49	-8.615850e-47
Msa0021960	Msa1267770	0.805002	1.647049e-49	-8.615850e-47
Msa0021960	Msa1309030	0.802385	5.751721e-49	-8.615850e-47
Msa0021960	Msa1330420	0.802869	4.572234e-49	-8.615850e-47
Msa0021960	Msa1366340	0.826728	2.312741e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021960	MtrunA17_Chr1g0173841	94.656	393	10	4	1	384	1	391	0.0	760
Msa0021960	MtrunA17_Chr7g0258011	73.000	300	57	6	86	379	66	347	1.47e-158	449
Msa0021960	MtrunA17_Chr8g0352011	61.935	310	80	6	86	381	54	339	3.52e-132	382
Msa0021960	MtrunA17_Chr2g0328921	63.667	300	78	6	87	383	44	315	1.41e-127	369
Msa0021960	MtrunA17_Chr5g0422571	65.368	231	51	4	140	368	59	262	6.37e-107	316
Msa0021960	MtrunA17_Chr2g0321291	61.475	244	79	4	137	379	76	305	3.06e-106	315
Msa0021960	MtrunA17_Chr4g0026521	62.553	235	66	3	146	377	75	290	9.24e-104	308
Msa0021960	MtrunA17_Chr1g0198651	74.419	172	41	1	205	373	99	270	1.17e-96	290
Msa0021960	MtrunA17_Chr4g0053341	62.673	217	52	2	143	359	38	225	6.84e-94	280
Msa0021960	MtrunA17_Chr1g0200421	37.195	164	92	5	215	370	245	405	1.21e-23	102
Msa0021960	MtrunA17_Chr2g0320341	37.584	149	84	4	223	364	246	392	2.17e-21	94.7
Msa0021960	MtrunA17_Chr1g0199101	35.374	147	83	6	208	352	63	199	9.38e-20	90.9
Msa0021960	MtrunA17_Chr7g0268961	34.437	151	83	5	209	352	33	174	1.45e-19	90.1
Msa0021960	MtrunA17_Chr1g0151351	35.915	142	80	5	213	352	62	194	1.81e-19	89.7
Msa0021960	MtrunA17_Chr4g0029521	35.971	139	80	4	215	352	61	191	1.95e-19	89.7
Msa0021960	MtrunA17_Chr1g0210821	34.416	154	91	5	208	360	60	204	2.42e-19	89.7
Msa0021960	MtrunA17_Chr1g0181381	31.977	172	100	5	208	378	54	209	2.47e-19	89.4
Msa0021960	MtrunA17_Chr1g0162971	36.691	139	78	5	215	352	64	193	2.59e-19	89.4
Msa0021960	MtrunA17_Chr1g0185121	35.915	142	80	5	213	352	61	193	3.92e-19	88.6
Msa0021960	MtrunA17_Chr1g0191991	32.948	173	90	7	209	373	74	228	4.30e-19	89.0
Msa0021960	MtrunA17_Chr1g0163001	34.932	146	85	5	208	352	59	195	4.33e-19	89.0
Msa0021960	MtrunA17_Chr2g0326381	34.932	146	86	4	208	352	48	185	9.94e-19	87.0
Msa0021960	MtrunA17_Chr2g0330171	33.333	147	86	5	208	352	62	198	1.65e-18	87.0
Msa0021960	MtrunA17_Chr8g0342421	34.286	140	80	5	215	352	85	214	1.79e-18	87.0
Msa0021960	MtrunA17_Chr7g0263941	35.374	147	83	6	208	352	50	186	1.96e-18	86.3
Msa0021960	MtrunA17_Chr3g0123941	36.025	161	93	7	223	379	139	293	5.07e-18	84.3
Msa0021960	MtrunA17_Chr8g0382121	37.143	140	81	6	223	357	127	264	1.47e-17	82.8
Msa0021960	MtrunA17_Chr4g0040571	30.857	175	103	5	208	381	55	212	3.01e-17	83.2
Msa0021960	MtrunA17_Chr8g0373541	34.532	139	81	4	215	352	56	185	4.88e-17	82.8
Msa0021960	MtrunA17_Chr2g0324991	33.803	142	84	5	208	347	8	141	7.37e-16	74.3
Msa0021960	MtrunA17_Chr3g0141431	31.655	139	87	3	213	350	43	174	8.11e-15	75.5
Msa0021960	MtrunA17_Chr8g0375521	29.834	181	104	7	183	348	6	178	6.84e-13	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021960	AT3G57670.1	58.722	407	121	8	1	384	1	383	5.64e-143	411
Msa0021960	AT1G51220.1	55.014	349	127	5	39	376	8	337	7.72e-130	376
Msa0021960	AT3G20880.1	56.637	339	115	10	49	376	93	410	6.72e-121	356
Msa0021960	AT1G13290.1	66.818	220	42	4	144	361	53	243	1.04e-101	303
Msa0021960	AT1G08290.1	58.091	241	91	4	139	369	92	332	5.21e-98	295
Msa0021960	AT1G34790.1	61.039	231	76	1	145	375	83	299	7.54e-97	291
Msa0021960	AT1G34370.3	38.776	147	79	4	215	352	28	172	1.30e-24	102
Msa0021960	AT1G34370.2	38.776	147	79	4	215	352	238	382	3.46e-24	104
Msa0021960	AT1G34370.1	38.776	147	79	4	215	352	238	382	3.46e-24	104
Msa0021960	AT5G22890.1	39.865	148	76	5	223	360	219	363	3.77e-22	97.1
Msa0021960	AT5G03150.1	32.353	170	98	5	215	383	76	229	8.63e-20	91.3
Msa0021960	AT1G55110.3	36.620	142	79	5	213	352	84	216	1.46e-19	90.5
Msa0021960	AT1G55110.1	36.620	142	79	5	213	352	84	216	1.46e-19	90.5
Msa0021960	AT1G55110.2	36.620	142	79	5	213	352	84	216	1.46e-19	90.5
Msa0021960	AT2G02070.2	34.194	155	92	4	199	352	59	204	2.43e-19	90.1
Msa0021960	AT2G02070.1	34.194	155	92	4	199	352	59	204	2.43e-19	90.1
Msa0021960	AT2G02080.1	35.461	141	81	4	213	352	75	206	4.68e-19	89.4
Msa0021960	AT2G02080.4	35.461	141	81	4	213	352	75	206	4.68e-19	89.4
Msa0021960	AT2G02080.5	35.461	141	81	4	213	352	75	206	4.68e-19	89.4
Msa0021960	AT2G02080.3	35.461	141	81	4	213	352	75	206	4.68e-19	89.4
Msa0021960	AT1G14580.1	35.374	147	83	5	208	352	69	205	1.46e-18	87.4
Msa0021960	AT1G14580.2	35.374	147	83	5	208	352	69	205	1.46e-18	87.4
Msa0021960	AT1G14580.3	35.374	147	83	5	208	352	83	219	1.94e-18	87.0
Msa0021960	AT2G02080.6	36.232	138	78	4	216	352	1	129	2.27e-18	86.7
Msa0021960	AT2G02080.2	36.232	138	78	4	216	352	1	129	2.27e-18	86.7
Msa0021960	AT5G66730.1	35.915	142	79	6	213	352	53	184	9.80e-18	85.1
Msa0021960	AT3G45260.2	35.971	139	80	4	215	352	62	192	2.14e-17	84.0
Msa0021960	AT3G45260.1	35.971	139	80	4	215	352	62	192	2.14e-17	84.0
Msa0021960	AT5G60470.1	33.813	139	83	4	215	352	58	188	3.29e-17	83.2
Msa0021960	AT5G60470.2	33.813	139	83	4	215	352	67	197	3.31e-17	83.2
Msa0021960	AT5G60470.3	33.813	139	83	4	215	352	63	193	3.42e-17	83.2
Msa0021960	AT5G44160.1	33.813	139	82	4	215	352	60	189	5.09e-17	82.8
Msa0021960	AT5G44160.2	33.813	139	82	4	215	352	21	150	5.13e-17	82.8
Msa0021960	AT1G03840.1	32.192	146	89	4	208	352	57	193	6.54e-17	82.8
Msa0021960	AT1G03840.2	33.562	146	87	5	208	352	55	191	6.69e-17	82.8
Msa0021960	AT3G13810.4	32.877	146	89	4	208	352	86	223	1.67e-16	81.3
Msa0021960	AT3G13810.1	32.877	146	89	4	208	352	86	223	1.67e-16	81.3
Msa0021960	AT3G13810.2	32.877	146	89	4	208	352	87	224	1.75e-16	81.3
Msa0021960	AT3G13810.5	32.877	146	89	4	208	352	81	218	1.86e-16	81.3
Msa0021960	AT3G13810.6	32.877	146	89	4	208	352	67	204	2.04e-16	81.3
Msa0021960	AT3G13810.3	32.877	146	89	4	208	352	73	210	2.09e-16	81.3
Msa0021960	AT3G50700.1	32.877	146	88	4	208	352	50	186	3.17e-16	80.5
Msa0021960	AT4G02670.2	32.192	146	90	3	208	352	71	208	3.39e-16	80.1
Msa0021960	AT4G02670.1	32.192	146	90	3	208	352	69	206	3.42e-16	80.1

Find 84 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCATCAATCTTGCACTTTAA+TGG	0.133562	1_1:-39976593	Msa0021960:CDS
ATTATTGAATTGGAAGAAAT+TGG	0.185958	1_1:+39976921	None:intergenic
ACTCCTTCTCAGATTCTTAT+TGG	0.201568	1_1:-39976325	Msa0021960:CDS
TGTGTACCTCTTAGAGATTC+TGG	0.222352	1_1:+39974006	None:intergenic
AAAGATCATATAAGAGCTTT+TGG	0.231134	1_1:-39973721	Msa0021960:CDS
ATGAAATTGTGAAGATAATT+AGG	0.241835	1_1:+39976841	None:intergenic
GGGAGTGGTCATGCTGCTTA+TGG	0.311784	1_1:-39973700	Msa0021960:CDS
TTGGATTATTATTATTGAAT+TGG	0.318920	1_1:+39976911	None:intergenic
CACTTCAAACACATTATAAA+AGG	0.323447	1_1:-39973885	Msa0021960:CDS
CATGTTGTTGTATCTGTTGA+AGG	0.332315	1_1:+39976267	None:intergenic
GTGACTGTTGCACTTCATAT+AGG	0.339638	1_1:-39976520	Msa0021960:CDS
TGACTGTTGCACTTCATATA+GGG	0.360463	1_1:-39976519	Msa0021960:CDS
TCTTTCAATGGCTTTGCTCT+TGG	0.361148	1_1:+39973916	None:intergenic
ACCCTTGTTAAGTGATCTAT+TGG	0.367615	1_1:+39976363	None:intergenic
ATTGTTGTTCACCAGGTTGC+AGG	0.377391	1_1:-39973954	Msa0021960:CDS
CCTTGTTATTGTTGTTCACC+AGG	0.383239	1_1:-39973961	Msa0021960:CDS
CATGCTGCTTATGGAATTGA+TGG	0.388035	1_1:-39973691	Msa0021960:CDS
GAAGAAGGGTAATGGTTTGT+TGG	0.403794	1_1:+39976892	None:intergenic
TAGTCATAAAGTAGAAGAAA+AGG	0.405108	1_1:-39976557	Msa0021960:CDS
GGATGGTTGTGGTGGGATGA+AGG	0.410709	1_1:+39976862	None:intergenic
ATGATGATGGTAGTGGAAAA+AGG	0.413174	1_1:+39976789	None:intergenic
AAGCTTTGGTATTGTCTTTG+TGG	0.415419	1_1:-39973772	Msa0021960:CDS
GATGGTTGTGGTGGGATGAA+GGG	0.422119	1_1:+39976863	None:intergenic
GATGAGAAGAAATTTGAGTA+AGG	0.430003	1_1:+39976943	None:intergenic
CTTATCCTCAGATGCATATG+TGG	0.432175	1_1:-39974056	Msa0021960:intron
AACAGTTCTCAGGCAATTTG+TGG	0.435474	1_1:+39977046	None:intergenic
AGAAGAACTGTGGAAAGCTT+TGG	0.443136	1_1:-39973786	Msa0021960:CDS
AGTGTTCTGAAATCTTTCAA+TGG	0.447098	1_1:+39973904	None:intergenic
ATCTTGCACTTTAATGGATG+TGG	0.454122	1_1:-39976587	Msa0021960:CDS
TCTTGTTCAACTTCAGAAGC+AGG	0.458660	1_1:+39973649	None:intergenic
TGAGAGTGGGAACAGTTCTC+AGG	0.460997	1_1:+39977036	None:intergenic
AATTTATTAACTGACTATGA+TGG	0.461942	1_1:-39973537	Msa0021960:three_prime_UTR
CACTTAACAAGGGTCAGTAT+TGG	0.467580	1_1:-39976354	Msa0021960:CDS
AGCGACGATTCCTCTTCAGC+TGG	0.480169	1_1:-39976397	Msa0021960:CDS
CTAAGAGGTACACAACCAAC+AGG	0.500045	1_1:-39973997	Msa0021960:CDS
ATCTCAGAAGAACTAGGGCT+TGG	0.503709	1_1:+39976493	None:intergenic
GGTTTGAAGAAGAAGGGTAA+TGG	0.512390	1_1:+39976884	None:intergenic
AGTTCTCAAATTTGAAACCA+TGG	0.519692	1_1:+39973501	None:intergenic
GGAAGATGGTGAAGAAGAAG+AGG	0.526711	1_1:+39976726	None:intergenic
GTATAGTGTTGAGGTGAGAG+TGG	0.527857	1_1:+39977022	None:intergenic
CAGATGCATATGTGGGGACA+TGG	0.531260	1_1:-39974048	Msa0021960:CDS
CATGGATCACAATACAGAAA+AGG	0.532079	1_1:-39974030	Msa0021960:CDS
TATGTGTAGAAAATGTGGTA+AGG	0.535524	1_1:-39973842	Msa0021960:CDS
TTATCCTCAGATGCATATGT+GGG	0.539918	1_1:-39974055	Msa0021960:intron
GTTGCAATCTCAGAAGAACT+AGG	0.540111	1_1:+39976487	None:intergenic
ATAAGAATCTGAGAAGGAGT+AGG	0.541391	1_1:+39976328	None:intergenic
GAAGATAATTAGGATGGTTG+TGG	0.543497	1_1:+39976851	None:intergenic
GATGAAGGGTTTGAAGAAGA+AGG	0.545010	1_1:+39976877	None:intergenic
GATAATTAGGATGGTTGTGG+TGG	0.547796	1_1:+39976854	None:intergenic
ATGAGAAGAAATTTGAGTAA+GGG	0.549996	1_1:+39976944	None:intergenic
TATAGTGTTGAGGTGAGAGT+GGG	0.552979	1_1:+39977023	None:intergenic
GGATAAGACTTAAAAGTGGA+AGG	0.557559	1_1:+39976686	None:intergenic
GTAGGGATAAGACTTAAAAG+TGG	0.560728	1_1:+39976682	None:intergenic
ATGAAGGGTTTGAAGAAGAA+GGG	0.562956	1_1:+39976878	None:intergenic
GAAGAAAAGGAAGATCATGA+AGG	0.566975	1_1:-39976544	Msa0021960:CDS
GATAAGACTTAAAAGTGGAA+GGG	0.571221	1_1:+39976687	None:intergenic
ATGCAGTTGTAGTTTGAAGA+TGG	0.571936	1_1:+39976758	None:intergenic
TAAGAATCTGAGAAGGAGTA+GGG	0.573637	1_1:+39976329	None:intergenic
AAAGGACCAGAATCTCTAAG+AGG	0.574044	1_1:-39974012	Msa0021960:CDS
CACATTATAAAAGGAAACAT+GGG	0.574183	1_1:-39973876	Msa0021960:CDS
AAGGAAAAGGTATAGTGTTG+AGG	0.576256	1_1:+39977013	None:intergenic
ACACATTATAAAAGGAAACA+TGG	0.579095	1_1:-39973877	Msa0021960:CDS
CACAACCAACAGGTATGCTA+AGG	0.584031	1_1:-39973987	Msa0021960:CDS
TGTTATTGTTGAAAGTTGTG+TGG	0.590691	1_1:+39976815	None:intergenic
TTGCAATCTCAGAAGAACTA+GGG	0.593596	1_1:+39976488	None:intergenic
AAAGGAAGAATATGAAGATG+AGG	0.594322	1_1:-39976656	Msa0021960:CDS
ATTGATGATGGTGATGATGA+TGG	0.595308	1_1:+39976608	None:intergenic
ATAACATAATATAATTCACT+TGG	0.595694	1_1:+39973570	None:intergenic
CCACTCAGACTCAGTAGTGA+AGG	0.601174	1_1:-39973618	Msa0021960:exon
TCAATGTTGTTCCTGCAACC+TGG	0.607275	1_1:+39973943	None:intergenic
TTAAAGTGCAAGATTGATGA+TGG	0.612972	1_1:+39976596	None:intergenic
ATGGATATATATAATAGCCA+TGG	0.615481	1_1:-39973518	Msa0021960:three_prime_UTR
TACCAATAGATCACTTAACA+AGG	0.618619	1_1:-39976365	Msa0021960:CDS
GGAAGCCTTAGCATACCTGT+TGG	0.624844	1_1:+39973982	None:intergenic
AATTGTGAAGATAATTAGGA+TGG	0.628754	1_1:+39976845	None:intergenic
CCTGGTGAACAACAATAACA+AGG	0.629412	1_1:+39973961	None:intergenic
CAACAGATACAACAACATGC+AGG	0.634469	1_1:-39976263	Msa0021960:intron
ATAATTAGGATGGTTGTGGT+GGG	0.636065	1_1:+39976855	None:intergenic
GGACCAATAAGAATCTGAGA+AGG	0.643048	1_1:+39976322	None:intergenic
ACAGGACAAGAGAACTGTGT+AGG	0.644430	1_1:+39976301	None:intergenic
AGAACTCATGAGAAGAACTG+TGG	0.653790	1_1:-39973796	Msa0021960:CDS
CCTTCACTACTGAGTCTGAG+TGG	0.658392	1_1:+39973618	None:intergenic
ACCAATAGATCACTTAACAA+GGG	0.699637	1_1:-39976364	Msa0021960:CDS
TATCCTCAGATGCATATGTG+GGG	0.710095	1_1:-39974054	Msa0021960:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAATAATATAATTTTTAAA+AGG	-	chr1_1:39975824-39975843	Msa0021960:intron	0.0%
!!!	TAATAATATAATTTTTAAAA+GGG	-	chr1_1:39975825-39975844	Msa0021960:intron	0.0%
!!!	ATAAGAAAAAATTATCTTTT+TGG	-	chr1_1:39974874-39974893	Msa0021960:intron	10.0%
!!	TTAATATATTATCATTTACT+TGG	+	chr1_1:39975073-39975092	None:intergenic	10.0%
!!!	ATAAATTACATTAAATTTTG+AGG	-	chr1_1:39975328-39975347	Msa0021960:intron	10.0%
!!!	TTATAAATTTCATTAATTTG+AGG	-	chr1_1:39975381-39975400	Msa0021960:intron	10.0%
!!	ATTATTTACAATTAAATAGA+AGG	+	chr1_1:39976059-39976078	None:intergenic	10.0%
!!	TTCTATTTAATTGTAAATAA+TGG	-	chr1_1:39976058-39976077	Msa0021960:intron	10.0%
!!!	AAATAATGGTTTTTATATTT+TGG	-	chr1_1:39976072-39976091	Msa0021960:intron	10.0%
!!	AAATAGAAAAAGAAAAGAAA+AGG	+	chr1_1:39973559-39973578	None:intergenic	15.0%
!!	TTGGATTATTATTATTGAAT+TGG	+	chr1_1:39973642-39973661	None:intergenic	15.0%
!!!	TGATTTTCTTAAATTATCAA+CGG	-	chr1_1:39974529-39974548	Msa0021960:intron	15.0%
!!!	TGAAAACAAATTTAATTTCT+TGG	-	chr1_1:39974639-39974658	Msa0021960:intron	15.0%
!!!	GAAAACAAATTTAATTTCTT+GGG	-	chr1_1:39974640-39974659	Msa0021960:intron	15.0%
!!	TTTAATTAATTACACCAATA+TGG	+	chr1_1:39974812-39974831	None:intergenic	15.0%
!!	AAACAAAAACTATTAATTGT+TGG	+	chr1_1:39975099-39975118	None:intergenic	15.0%
!!!	ATTATAAATTAACTTGAGAA+AGG	-	chr1_1:39975776-39975795	Msa0021960:intron	15.0%
!!!	TTATAAATTAACTTGAGAAA+GGG	-	chr1_1:39975777-39975796	Msa0021960:intron	15.0%
!!!	TTTTATGTGGATTAATAATT+AGG	+	chr1_1:39976224-39976243	None:intergenic	15.0%
!!!	ATAATAACTTCTTCTTTTTA+AGG	-	chr1_1:39976438-39976457	Msa0021960:CDS	15.0%
!!	ATAACATAATATAATTCACT+TGG	+	chr1_1:39976983-39977002	None:intergenic	15.0%
!!	AAAAAGAAAAGAAAAGGAAA+AGG	+	chr1_1:39973553-39973572	None:intergenic	20.0%
!!!	TCTTTAATTTTTCTCATCAA+TGG	-	chr1_1:39973579-39973598	Msa0021960:three_prime_UTR	20.0%
!!	ATTATTGAATTGGAAGAAAT+TGG	+	chr1_1:39973632-39973651	None:intergenic	20.0%
!!	ATGAAATTGTGAAGATAATT+AGG	+	chr1_1:39973712-39973731	None:intergenic	20.0%
!!	TGGACACTAAATTAATATTA+AGG	+	chr1_1:39974394-39974413	None:intergenic	20.0%
!!	AAGAAAAATTTCAAAAGAAG+AGG	+	chr1_1:39974730-39974749	None:intergenic	20.0%
!!!	GTATTTTTTGCATGATAAAA+TGG	-	chr1_1:39974841-39974860	Msa0021960:intron	20.0%
!!	ATATGAATTCAGTCTAAAAA+GGG	+	chr1_1:39975132-39975151	None:intergenic	20.0%
!!	TATATGAATTCAGTCTAAAA+AGG	+	chr1_1:39975133-39975152	None:intergenic	20.0%
!!	CTATATATGATACAATTAGA+AGG	+	chr1_1:39975252-39975271	None:intergenic	20.0%
!!	TGTAATGATTATTTAACTCA+AGG	+	chr1_1:39975443-39975462	None:intergenic	20.0%
!!!	TTTTTAACAAAAAATGGTGA+AGG	-	chr1_1:39975745-39975764	Msa0021960:intron	20.0%
!!!	TTTTAACAAAAAATGGTGAA+GGG	-	chr1_1:39975746-39975765	Msa0021960:intron	20.0%
!!!	CATATCATTTTTGTTTTATG+TGG	+	chr1_1:39976237-39976256	None:intergenic	20.0%
!!	TGAAAAAACTCAAAAAATGT+TGG	+	chr1_1:39976347-39976366	None:intergenic	20.0%
!!	AATTTATTAACTGACTATGA+TGG	-	chr1_1:39977013-39977032	Msa0021960:five_prime_UTR	20.0%
!	ATGAGAAGAAATTTGAGTAA+GGG	+	chr1_1:39973609-39973628	None:intergenic	25.0%
!	AATTGTGAAGATAATTAGGA+TGG	+	chr1_1:39973708-39973727	None:intergenic	25.0%
!!!	CATATTCTTCCTTTTTTGTA+GGG	+	chr1_1:39973888-39973907	None:intergenic	25.0%
!!!	TCATATTCTTCCTTTTTTGT+AGG	+	chr1_1:39973889-39973908	None:intergenic	25.0%
!	TAGTCATAAAGTAGAAGAAA+AGG	-	chr1_1:39973993-39974012	Msa0021960:CDS	25.0%
!!!	GTGCTAAGGTTTTTAAAAAA+AGG	+	chr1_1:39974351-39974370	None:intergenic	25.0%
!	TCTTAAATTATCAACGGTAT+CGG	-	chr1_1:39974535-39974554	Msa0021960:intron	25.0%
!!!	TGTTTTCAGAAGTATGAATT+TGG	+	chr1_1:39974627-39974646	None:intergenic	25.0%
!	GATGTTTGACTAATTGTAAT+AGG	-	chr1_1:39974692-39974711	Msa0021960:intron	25.0%
!	GAAGAAAAATAGAAAGTGAA+CGG	+	chr1_1:39974753-39974772	None:intergenic	25.0%
!	TCTTTGTTCTTTAACCATAT+TGG	-	chr1_1:39974795-39974814	Msa0021960:intron	25.0%
!!	TCAGATTCTATATATCCTTT+TGG	-	chr1_1:39974919-39974938	Msa0021960:intron	25.0%
!!	TTAATAGAACTGAATTTTGC+AGG	-	chr1_1:39975031-39975050	Msa0021960:intron	25.0%
!!	TAATAGAACTGAATTTTGCA+GGG	-	chr1_1:39975032-39975051	Msa0021960:intron	25.0%
!	AAGTTCCACATATACATTAA+TGG	-	chr1_1:39975167-39975186	Msa0021960:intron	25.0%
!	TATGTCCATTAATGTATATG+TGG	+	chr1_1:39975175-39975194	None:intergenic	25.0%
!	CATATAAATGTCATGTCAAA+AGG	-	chr1_1:39975929-39975948	Msa0021960:intron	25.0%
!	TGCATTCCTAATTAAAATCT+TGG	-	chr1_1:39976255-39976274	Msa0021960:intron	25.0%
!	ATTCCTAATTAAAATCTTGG+CGG	-	chr1_1:39976258-39976277	Msa0021960:intron	25.0%
!	GTAATAATCATCATTGATGA+AGG	+	chr1_1:39976285-39976304	None:intergenic	25.0%
!	CACTTCAAACACATTATAAA+AGG	-	chr1_1:39976665-39976684	Msa0021960:CDS	25.0%
!	ACACATTATAAAAGGAAACA+TGG	-	chr1_1:39976673-39976692	Msa0021960:CDS	25.0%
!	CACATTATAAAAGGAAACAT+GGG	-	chr1_1:39976674-39976693	Msa0021960:CDS	25.0%
!!	AAAGATCATATAAGAGCTTT+TGG	-	chr1_1:39976829-39976848	Msa0021960:CDS	25.0%
!!	AAGATCATATAAGAGCTTTT+GGG	-	chr1_1:39976830-39976849	Msa0021960:CDS	25.0%
!	ATGGATATATATAATAGCCA+TGG	-	chr1_1:39977032-39977051	Msa0021960:five_prime_UTR	25.0%
	GATGAGAAGAAATTTGAGTA+AGG	+	chr1_1:39973610-39973629	None:intergenic	30.0%
	TGTTATTGTTGAAAGTTGTG+TGG	+	chr1_1:39973738-39973757	None:intergenic	30.0%
	GATAAGACTTAAAAGTGGAA+GGG	+	chr1_1:39973866-39973885	None:intergenic	30.0%
!	AAGTCTTATCCCTACAAAAA+AGG	-	chr1_1:39973876-39973895	Msa0021960:CDS	30.0%
	AAAGGAAGAATATGAAGATG+AGG	-	chr1_1:39973894-39973913	Msa0021960:CDS	30.0%
	TTAAAGTGCAAGATTGATGA+TGG	+	chr1_1:39973957-39973976	None:intergenic	30.0%
	TCATCAATCTTGCACTTTAA+TGG	-	chr1_1:39973957-39973976	Msa0021960:CDS	30.0%
	TACCAATAGATCACTTAACA+AGG	-	chr1_1:39974185-39974204	Msa0021960:intron	30.0%
	ACCAATAGATCACTTAACAA+GGG	-	chr1_1:39974186-39974205	Msa0021960:intron	30.0%
	TTAAGGAGAAGAAGATCTAT+AGG	+	chr1_1:39974377-39974396	None:intergenic	30.0%
	TTTAGTGTATTCATATGCGT+CGG	+	chr1_1:39974504-39974523	None:intergenic	30.0%
	GTATGAATTTGGAAGAAAAG+TGG	+	chr1_1:39974616-39974635	None:intergenic	30.0%
	GAACAAAGAAAAATGACCTT+GGG	+	chr1_1:39974784-39974803	None:intergenic	30.0%
	AGAACAAAGAAAAATGACCT+TGG	+	chr1_1:39974785-39974804	None:intergenic	30.0%
	GAGTTGTTTAATCAACCAAA+AGG	+	chr1_1:39974937-39974956	None:intergenic	30.0%
	TTTGGTTGATTAAACAACTC+AGG	-	chr1_1:39974937-39974956	Msa0021960:intron	30.0%
	AGACTTCAATGTTGTACTAA+AGG	+	chr1_1:39974977-39974996	None:intergenic	30.0%
	AATGTATATGTGGAACTTTC+AGG	+	chr1_1:39975165-39975184	None:intergenic	30.0%
!	TCATTAATTTGAGGTGCAAA+AGG	-	chr1_1:39975390-39975409	Msa0021960:intron	30.0%
	TTACAACTAAGTGATCTCTA+TGG	-	chr1_1:39975595-39975614	Msa0021960:intron	30.0%
	CATTTCACAATCAACTCAAT+GGG	+	chr1_1:39975714-39975733	None:intergenic	30.0%
	TCATTTCACAATCAACTCAA+TGG	+	chr1_1:39975715-39975734	None:intergenic	30.0%
	AGGGAAATCATTATTAACAG+CGG	-	chr1_1:39975796-39975815	Msa0021960:intron	30.0%
	ATAACAATGTCATGTCTTCT+AGG	-	chr1_1:39975958-39975977	Msa0021960:intron	30.0%
	ACAATTAAATAGAAGGCAAG+CGG	+	chr1_1:39976052-39976071	None:intergenic	30.0%
!	AGTTGCAAAATCAAGTTGTT+AGG	-	chr1_1:39976163-39976182	Msa0021960:intron	30.0%
!	GTTGCAAAATCAAGTTGTTA+GGG	-	chr1_1:39976164-39976183	Msa0021960:intron	30.0%
	TTCCTAATTAAAATCTTGGC+GGG	-	chr1_1:39976259-39976278	Msa0021960:intron	30.0%
	AAAACTCAAAAAATGTTGGC+TGG	+	chr1_1:39976343-39976362	None:intergenic	30.0%
!!	AGTGTTCTGAAATCTTTCAA+TGG	+	chr1_1:39976649-39976668	None:intergenic	30.0%
!	CCACATTTTCTACACATAAA+AGG	+	chr1_1:39976706-39976725	None:intergenic	30.0%
!	CCTTTTATGTGTAGAAAATG+TGG	-	chr1_1:39976703-39976722	Msa0021960:CDS	30.0%
	TATGTGTAGAAAATGTGGTA+AGG	-	chr1_1:39976708-39976727	Msa0021960:CDS	30.0%
!	GTTCTGATTTTAAGCATAAG+CGG	-	chr1_1:39976800-39976819	Msa0021960:CDS	30.0%
!!!	AATTGATGGTTTTGAAGAAG+AGG	-	chr1_1:39976873-39976892	Msa0021960:CDS	30.0%
!	AGTTCTCAAATTTGAAACCA+TGG	+	chr1_1:39977052-39977071	None:intergenic	30.0%
!	AAGGAAAAGGTATAGTGTTG+AGG	+	chr1_1:39973540-39973559	None:intergenic	35.0%
	ATGAAGGGTTTGAAGAAGAA+GGG	+	chr1_1:39973675-39973694	None:intergenic	35.0%
	ATAATTAGGATGGTTGTGGT+GGG	+	chr1_1:39973698-39973717	None:intergenic	35.0%
	GAAGATAATTAGGATGGTTG+TGG	+	chr1_1:39973702-39973721	None:intergenic	35.0%
!!	ATGATGATGGTAGTGGAAAA+AGG	+	chr1_1:39973764-39973783	None:intergenic	35.0%
	ATGCAGTTGTAGTTTGAAGA+TGG	+	chr1_1:39973795-39973814	None:intergenic	35.0%
	GGATAAGACTTAAAAGTGGA+AGG	+	chr1_1:39973867-39973886	None:intergenic	35.0%
	GTAGGGATAAGACTTAAAAG+TGG	+	chr1_1:39973871-39973890	None:intergenic	35.0%
!!	ATTGATGATGGTGATGATGA+TGG	+	chr1_1:39973945-39973964	None:intergenic	35.0%
!	ATCTTGCACTTTAATGGATG+TGG	-	chr1_1:39973963-39973982	Msa0021960:CDS	35.0%
	GAAGAAAAGGAAGATCATGA+AGG	-	chr1_1:39974006-39974025	Msa0021960:CDS	35.0%
	TGACTGTTGCACTTCATATA+GGG	-	chr1_1:39974031-39974050	Msa0021960:CDS	35.0%
	TTGCAATCTCAGAAGAACTA+GGG	+	chr1_1:39974065-39974084	None:intergenic	35.0%
	ACCCTTGTTAAGTGATCTAT+TGG	+	chr1_1:39974190-39974209	None:intergenic	35.0%
	TAAGAATCTGAGAAGGAGTA+GGG	+	chr1_1:39974224-39974243	None:intergenic	35.0%
	ATAAGAATCTGAGAAGGAGT+AGG	+	chr1_1:39974225-39974244	None:intergenic	35.0%
	ACTCCTTCTCAGATTCTTAT+TGG	-	chr1_1:39974225-39974244	Msa0021960:intron	35.0%
!	TTGAAGGTTTTACAGCAAAC+AGG	+	chr1_1:39974270-39974289	None:intergenic	35.0%
	CATGTTGTTGTATCTGTTGA+AGG	+	chr1_1:39974286-39974305	None:intergenic	35.0%
	GTAGCTCAATGGTATGAATT+TGG	+	chr1_1:39974414-39974433	None:intergenic	35.0%
	AGTTGAATGAACCACAAACA+CGG	+	chr1_1:39974583-39974602	None:intergenic	35.0%
	AAAAATGACCTTGGGAAAAG+GGG	+	chr1_1:39974776-39974795	None:intergenic	35.0%
	GAAAAATGACCTTGGGAAAA+GGG	+	chr1_1:39974777-39974796	None:intergenic	35.0%
	AGAAAAATGACCTTGGGAAA+AGG	+	chr1_1:39974778-39974797	None:intergenic	35.0%
	AGTTGCATGGCAAAATACAT+AGG	+	chr1_1:39975009-39975028	None:intergenic	35.0%
	AGTTCTATTAAGCAGTTGCA+TGG	+	chr1_1:39975022-39975041	None:intergenic	35.0%
!	ATATGTGGAACTTTCAGGTA+TGG	+	chr1_1:39975160-39975179	None:intergenic	35.0%
	TCAAGAGGGTTCAATATCTT+TGG	-	chr1_1:39975530-39975549	Msa0021960:intron	35.0%
	CTCATCAACCTAATGATAGT+GGG	+	chr1_1:39975570-39975589	None:intergenic	35.0%
	ACTCATCAACCTAATGATAG+TGG	+	chr1_1:39975571-39975590	None:intergenic	35.0%
	TCTCTATGGAAATAGACAAG+AGG	-	chr1_1:39975609-39975628	Msa0021960:intron	35.0%
	CTCTATGGAAATAGACAAGA+GGG	-	chr1_1:39975610-39975629	Msa0021960:intron	35.0%
!!!	ATTGGTTTTGTCATCCGAAA+AGG	-	chr1_1:39976005-39976024	Msa0021960:intron	35.0%
	CAATTAAATAGAAGGCAAGC+GGG	+	chr1_1:39976051-39976070	None:intergenic	35.0%
!	ATTTTGCAACTTCAAGTGAG+GGG	+	chr1_1:39976154-39976173	None:intergenic	35.0%
!	GATTTTGCAACTTCAAGTGA+GGG	+	chr1_1:39976155-39976174	None:intergenic	35.0%
!	TGATTTTGCAACTTCAAGTG+AGG	+	chr1_1:39976156-39976175	None:intergenic	35.0%
!!	TTGTAAGAGTTTTGTCCATG+AGG	+	chr1_1:39976201-39976220	None:intergenic	35.0%
	TTATCCTCAGATGCATATGT+GGG	-	chr1_1:39976495-39976514	Msa0021960:CDS	35.0%
	CATGGATCACAATACAGAAA+AGG	-	chr1_1:39976520-39976539	Msa0021960:CDS	35.0%
!	AAGCTTTGGTATTGTCTTTG+TGG	-	chr1_1:39976778-39976797	Msa0021960:CDS	35.0%
	AACAGTTCTCAGGCAATTTG+TGG	+	chr1_1:39973507-39973526	None:intergenic	40.0%
!	TATAGTGTTGAGGTGAGAGT+GGG	+	chr1_1:39973530-39973549	None:intergenic	40.0%
!	GAAGAAGGGTAATGGTTTGT+TGG	+	chr1_1:39973661-39973680	None:intergenic	40.0%
	GGTTTGAAGAAGAAGGGTAA+TGG	+	chr1_1:39973669-39973688	None:intergenic	40.0%
	GATGAAGGGTTTGAAGAAGA+AGG	+	chr1_1:39973676-39973695	None:intergenic	40.0%
	GATAATTAGGATGGTTGTGG+TGG	+	chr1_1:39973699-39973718	None:intergenic	40.0%
!!	GATGATGATGATGATGGTAG+TGG	+	chr1_1:39973771-39973790	None:intergenic	40.0%
!	GATGGTGATGATGATGATGA+TGG	+	chr1_1:39973777-39973796	None:intergenic	40.0%
!!	TCTTTTAAAGGAGGGGAAGA+TGG	+	chr1_1:39973841-39973860	None:intergenic	40.0%
!!	AAGGGCTTCTTTTAAAGGAG+GGG	+	chr1_1:39973848-39973867	None:intergenic	40.0%
!!	GAAGGGCTTCTTTTAAAGGA+GGG	+	chr1_1:39973849-39973868	None:intergenic	40.0%
!	AGTGGAAGGGCTTCTTTTAA+AGG	+	chr1_1:39973853-39973872	None:intergenic	40.0%
	GTGACTGTTGCACTTCATAT+AGG	-	chr1_1:39974030-39974049	Msa0021960:CDS	40.0%
	GTTGCAATCTCAGAAGAACT+AGG	+	chr1_1:39974066-39974085	None:intergenic	40.0%
	ACTCAAAAATCCAGCTGAAG+AGG	+	chr1_1:39974166-39974185	None:intergenic	40.0%
	CACTTAACAAGGGTCAGTAT+TGG	-	chr1_1:39974196-39974215	Msa0021960:intron	40.0%
	GGACCAATAAGAATCTGAGA+AGG	+	chr1_1:39974231-39974250	None:intergenic	40.0%
	CAACAGATACAACAACATGC+AGG	-	chr1_1:39974287-39974306	Msa0021960:intron	40.0%
!!	AGATCTATAGGTTGGTGCTA+AGG	+	chr1_1:39974365-39974384	None:intergenic	40.0%
	GGAGAAGAAGATCTATAGGT+TGG	+	chr1_1:39974373-39974392	None:intergenic	40.0%
!	TTTGCAAAGGTGTAGCTCAA+TGG	+	chr1_1:39974425-39974444	None:intergenic	40.0%
	AAAATGACCTTGGGAAAAGG+GGG	+	chr1_1:39974775-39974794	None:intergenic	40.0%
	TCTACGCAGCAATTCTTCTT+TGG	+	chr1_1:39975493-39975512	None:intergenic	40.0%
	TGACAATGAGACACTTCAAG+AGG	-	chr1_1:39975515-39975534	Msa0021960:intron	40.0%
	GACAATGAGACACTTCAAGA+GGG	-	chr1_1:39975516-39975535	Msa0021960:intron	40.0%
!!	ATGATAGTGGGTTTGAGACT+TGG	+	chr1_1:39975558-39975577	None:intergenic	40.0%
	GTCTCAAACCCACTATCATT+AGG	-	chr1_1:39975559-39975578	Msa0021960:intron	40.0%
	TCATGAATGTTGTGTTCACG+AGG	-	chr1_1:39975982-39976001	Msa0021960:intron	40.0%
	AATGTTGTGTTCACGAGGAT+TGG	-	chr1_1:39975987-39976006	Msa0021960:intron	40.0%
	GAGGGGTTCAAATTTCATGT+AGG	+	chr1_1:39976137-39976156	None:intergenic	40.0%
	CTTATCCTCAGATGCATATG+TGG	-	chr1_1:39976494-39976513	Msa0021960:CDS	40.0%
	TATCCTCAGATGCATATGTG+GGG	-	chr1_1:39976496-39976515	Msa0021960:CDS	40.0%
	AAAGGACCAGAATCTCTAAG+AGG	-	chr1_1:39976538-39976557	Msa0021960:CDS	40.0%
	TGTGTACCTCTTAGAGATTC+TGG	+	chr1_1:39976547-39976566	None:intergenic	40.0%
	CCTGGTGAACAACAATAACA+AGG	+	chr1_1:39976592-39976611	None:intergenic	40.0%
!!	CCTTGTTATTGTTGTTCACC+AGG	-	chr1_1:39976589-39976608	Msa0021960:CDS	40.0%
!	TCTTTCAATGGCTTTGCTCT+TGG	+	chr1_1:39976637-39976656	None:intergenic	40.0%
!!!	CTTTTGCTGTTAGAGGAGAT+TGG	-	chr1_1:39976731-39976750	Msa0021960:CDS	40.0%
	AGAACTCATGAGAAGAACTG+TGG	-	chr1_1:39976754-39976773	Msa0021960:CDS	40.0%
	AGAAGAACTGTGGAAAGCTT+TGG	-	chr1_1:39976764-39976783	Msa0021960:CDS	40.0%
!!	CATATAAGAGCTTTTGGGAG+TGG	-	chr1_1:39976835-39976854	Msa0021960:CDS	40.0%
!	CATGCTGCTTATGGAATTGA+TGG	-	chr1_1:39976859-39976878	Msa0021960:CDS	40.0%
	TCTTGTTCAACTTCAGAAGC+AGG	+	chr1_1:39976904-39976923	None:intergenic	40.0%
!	GTATAGTGTTGAGGTGAGAG+TGG	+	chr1_1:39973531-39973550	None:intergenic	45.0%
	GGAAGATGGTGAAGAAGAAG+AGG	+	chr1_1:39973827-39973846	None:intergenic	45.0%
!!	GGAAGGGCTTCTTTTAAAGG+AGG	+	chr1_1:39973850-39973869	None:intergenic	45.0%
	ATCTCAGAAGAACTAGGGCT+TGG	+	chr1_1:39974060-39974079	None:intergenic	45.0%
	ACAGGACAAGAGAACTGTGT+AGG	+	chr1_1:39974252-39974271	None:intergenic	45.0%
!	CATAGGAGGAGGTTTTGCAA+AGG	+	chr1_1:39974438-39974457	None:intergenic	45.0%
	CCACAAACACGGACATAACA+TGG	+	chr1_1:39974572-39974591	None:intergenic	45.0%
	CCATGTTATGTCCGTGTTTG+TGG	-	chr1_1:39974569-39974588	Msa0021960:intron	45.0%
!	TTTTCTTCCCCCTTTTCCCA+AGG	-	chr1_1:39974765-39974784	Msa0021960:intron	45.0%
!	GTGGAACTTTCAGGTATGGA+AGG	+	chr1_1:39975156-39975175	None:intergenic	45.0%
	AGGGATGAATTGACACCTCA+TGG	-	chr1_1:39976183-39976202	Msa0021960:intron	45.0%
!!!	GGCCCGCCAAGATTTTAATT+AGG	+	chr1_1:39976264-39976283	None:intergenic	45.0%
!	CTAAGAGGTACACAACCAAC+AGG	-	chr1_1:39976553-39976572	Msa0021960:CDS	45.0%
	CACAACCAACAGGTATGCTA+AGG	-	chr1_1:39976563-39976582	Msa0021960:CDS	45.0%
!	ATTGTTGTTCACCAGGTTGC+AGG	-	chr1_1:39976596-39976615	Msa0021960:CDS	45.0%
	TCAATGTTGTTCCTGCAACC+TGG	+	chr1_1:39976610-39976629	None:intergenic	45.0%
!!!	GGTAAGGCTTTTGCTGTTAG+AGG	-	chr1_1:39976724-39976743	Msa0021960:CDS	45.0%
!!!	ATAATTTTTTTAACAAAAAA+TGG	-	chr1_1:39975739-39975758	Msa0021960:intron	5.0%
	TGAGAGTGGGAACAGTTCTC+AGG	+	chr1_1:39973517-39973536	None:intergenic	50.0%
!	GATGGTTGTGGTGGGATGAA+GGG	+	chr1_1:39973690-39973709	None:intergenic	50.0%
	AAACCTCCTCCTATGAAGCG+CGG	-	chr1_1:39974443-39974462	Msa0021960:intron	50.0%
	TATGAAGCGCGGACACTCAT+CGG	-	chr1_1:39974454-39974473	Msa0021960:intron	50.0%
!	GCTGCGTCGTTAGACCTTTT+CGG	+	chr1_1:39976022-39976041	None:intergenic	50.0%
	TGTCCCCACATATGCATCTG+AGG	+	chr1_1:39976502-39976521	None:intergenic	50.0%
	CAGATGCATATGTGGGGACA+TGG	-	chr1_1:39976502-39976521	Msa0021960:CDS	50.0%
	GGAAGCCTTAGCATACCTGT+TGG	+	chr1_1:39976571-39976590	None:intergenic	50.0%
	CCTTCACTACTGAGTCTGAG+TGG	+	chr1_1:39976935-39976954	None:intergenic	50.0%
	CCACTCAGACTCAGTAGTGA+AGG	-	chr1_1:39976932-39976951	Msa0021960:CDS	50.0%
!	GGATGGTTGTGGTGGGATGA+AGG	+	chr1_1:39973691-39973710	None:intergenic	55.0%
	AGCGACGATTCCTCTTCAGC+TGG	-	chr1_1:39974153-39974172	Msa0021960:intron	55.0%
	GATGAGTGTCCGCGCTTCAT+AGG	+	chr1_1:39974455-39974474	None:intergenic	55.0%
!	GGGAGTGGTCATGCTGCTTA+TGG	-	chr1_1:39976850-39976869	Msa0021960:CDS	55.0%
	TGTCCGCGCTTCATAGGAGG+AGG	+	chr1_1:39974449-39974468	None:intergenic	60.0%
	GAGTGTCCGCGCTTCATAGG+AGG	+	chr1_1:39974452-39974471	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	39973497	39977075	39973497	ID=Msa0021960;Name=Msa0021960
chr1_1	mRNA	39973497	39977075	39973497	ID=Msa0021960-mRNA-1;Parent=Msa0021960;Name=Msa0021960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101\|1\|1\|1\|1\|1\|2\|127\|384
chr1_1	exon	39973497	39974067	39973497	ID=Msa0021960-mRNA-1:exon:12119;Parent=Msa0021960-mRNA-1
chr1_1	exon	39976264	39977075	39976264	ID=Msa0021960-mRNA-1:exon:12118;Parent=Msa0021960-mRNA-1
chr1_1	five_prime_UTR	39976975	39977075	39976975	ID=Msa0021960-mRNA-1:five_prime_utr;Parent=Msa0021960-mRNA-1
chr1_1	CDS	39976264	39976974	39976264	ID=Msa0021960-mRNA-1:cds;Parent=Msa0021960-mRNA-1
chr1_1	CDS	39973624	39974067	39973624	ID=Msa0021960-mRNA-1:cds;Parent=Msa0021960-mRNA-1
chr1_1	three_prime_UTR	39973497	39973623	39973497	ID=Msa0021960-mRNA-1:three_prime_utr;Parent=Msa0021960-mRNA-1

Gene Sequence

>Msa0021960

ATGGCAGACCCTTACTCAAATTTCTTCTCATCCAATTTCTTCCAATTCAATAATAATAATCCAACAAACCATTACCCTTCTTCTTCAAACCCTTCATCCCACCACAACCATCCTAATTATCTTCACAATTTCATTAACCACACAACTTTCAACAATAACAACACCTTTTTCCACTACCATCATCATCATCATCACCATCTTCAAACTACAACTGCATCTTGTTCTTCCTCTTCTTCTTCACCATCTTCCCCTCCTTTAAAAGAAGCCCTTCCACTTTTAAGTCTTATCCCTACAAAAAAGGAAGAATATGAAGATGAGGTACATAATCAACATCAACAACATCACCATCATCATCACCATCATCAATCTTGCACTTTAATGGATGTGGATGATTGTAGTCATAAAGTAGAAGAAAAGGAAGATCATGAAGGTGTGACTGTTGCACTTCATATAGGGTTACCAAGCCCTAGTTCTTCTGAGATTGCAACTATGATGATGTCTTCTTCTTCTGAGATGATGATTAATGAACAAGATCATTTACAAGATGTTACTATTAGCGACGATTCCTCTTCAGCTGGATTTTTGAGTACCAATAGATCACTTAACAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTTATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTGTAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGTTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCATTGAAAGATTTCAGAACACTTCAAACACATTATAAAAGGAAACATGGGATTAAGCCTTTTATGTGTAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGAAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGCGGTCGCTTAAAGATCATATAAGAGCTTTTGGGAGTGGTCATGCTGCTTATGGAATTGATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGAATCCACTCAGACTCAGTAG

Protein sequence

>Msa0021960

MADPYSNFFSSNFFQFNNNNPTNHYPSSSNPSSHHNHPNYLHNFINHTTFNNNNTFFHYHHHHHHHLQTTTASCSSSSSSPSSPPLKEALPLLSLIPTKKEEYEDEVHNQHQQHHHHHHHHQSCTLMDVDDCSHKVEEKEDHEGVTVALHIGLPSPSSSEIATMMMSSSSEMMINEQDHLQDVTISDDSSSAGFLSTNRSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQTQ*