AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0762970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762970 MtrunA17_Chr5g0413371 92.308 403 27 1 1 403 132 530 0.0 770
Msa0762970 MtrunA17_Chr1g0193171 27.517 298 181 9 114 403 60 330 1.56e-20 94.0
Msa0762970 MtrunA17_Chr1g0190521 29.717 212 135 4 206 404 132 342 2.36e-20 93.6
Msa0762970 MtrunA17_Chr7g0275141 28.788 132 91 2 257 386 20 150 1.59e-17 84.7
Msa0762970 MtrunA17_Chr1g0190511 28.302 212 138 4 206 404 27 237 1.99e-16 81.3
Msa0762970 MtrunA17_Chr4g0069321 30.675 163 109 3 243 403 171 331 4.03e-16 80.5
Msa0762970 MtrunA17_Chr4g0049281 33.077 130 84 2 259 386 8 136 6.42e-16 79.7
Msa0762970 MtrunA17_Chr8g0338961 31.724 145 95 3 244 386 257 399 3.81e-14 73.9
Msa0762970 MtrunA17_Chr6g0462901 27.692 130 92 2 256 384 405 533 4.12e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762970 AT3G05850.1 25.305 328 219 10 88 403 38 351 1.72e-18 88.2
Msa0762970 AT1G06740.1 25.301 249 164 8 146 387 54 287 2.45e-15 78.6

Find 124 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGGGTCAGTTATTT+TGG 0.059773 5_2:-21642252 None:intergenic
CGAGACCCAGGTTCGGTTTC+GGG 0.114778 5_2:-21636569 None:intergenic
CAATGTTTAGTGGTTTATTT+TGG 0.196890 5_2:+21642061 Msa0762970:three_prime_UTR
CACTGCGTAATGCAAAATTT+AGG 0.219611 5_2:-21636435 None:intergenic
ATACCCGCATAACTCATATT+TGG 0.224107 5_2:-21641727 None:intergenic
TCCTGATCGGTACTCCTATT+TGG 0.236061 5_2:+21640922 Msa0762970:CDS
AGAAAATGGGTCAGTTATTC+CGG 0.254483 5_2:-21642216 None:intergenic
AAACATGAGCATTCAAGATT+TGG 0.255671 5_2:+21636610 Msa0762970:five_prime_UTR
TTTCCTTTGATACCTCTATT+AGG 0.262376 5_2:-21641376 None:intergenic
ATTTAGTGTTATATTGTATT+GGG 0.297084 5_2:-21642298 None:intergenic
GAAGTTAAGAAAACTAGTTT+AGG 0.304656 5_2:+21636816 Msa0762970:five_prime_UTR
ACGAGACCCAGGTTCGGTTT+CGG 0.311640 5_2:-21636570 None:intergenic
TAAGAAAAGTGTATAAATAA+AGG 0.319790 5_2:-21642364 None:intergenic
TATTTAGTGTTATATTGTAT+TGG 0.323817 5_2:-21642299 None:intergenic
AAGTTAAGAAAACTAGTTTA+GGG 0.326960 5_2:+21636817 Msa0762970:five_prime_UTR
ACTGCGTAATGCAAAATTTA+GGG 0.328314 5_2:-21636434 None:intergenic
AACTCACTAAGTATAATATC+AGG 0.335954 5_2:-21641166 None:intergenic
ATCAATAATGGACTCAATAA+TGG 0.336122 5_2:+21640974 Msa0762970:CDS
TCGGTACTCCTATTTGGATT+TGG 0.336972 5_2:+21640928 Msa0762970:CDS
CTAGAAGTTGGTCTATTGTT+TGG 0.346137 5_2:+21641433 Msa0762970:CDS
AGAAAAGAAGAACAATGATT+TGG 0.350025 5_2:+21636863 Msa0762970:five_prime_UTR
ATCTTATATGTTATCCCATC+TGG 0.354321 5_2:-21641601 None:intergenic
GAAGTTGGAAAGCAAGTTAA+AGG 0.356001 5_2:+21641699 Msa0762970:CDS
GAAGATGTTGATTCTCTGTT+TGG 0.361541 5_2:-21636712 None:intergenic
AAGAAAAGTGTATAAATAAA+GGG 0.363831 5_2:-21642363 None:intergenic
AGTGGATTGGCTATCAATAA+TGG 0.373898 5_2:+21640962 Msa0762970:CDS
AAGAGGGGTTTGAGATTAAG+AGG 0.381353 5_2:+21641500 Msa0762970:CDS
AGTTGTATTGAAAATTGAAA+TGG 0.391384 5_2:-21642266 None:intergenic
GTCATCAACCAAATCCAAAT+AGG 0.396507 5_2:-21640936 None:intergenic
TCAACAGAAGTTTCAATTTG+AGG 0.397293 5_2:+21636733 Msa0762970:five_prime_UTR
AAAGTAGAATATATTGTATT+GGG 0.398539 5_2:-21642339 None:intergenic
GAAAGTAGAATATATTGTAT+TGG 0.399220 5_2:-21642340 None:intergenic
AATAAACCCGAAACCGAACC+TGG 0.404728 5_2:+21636563 Msa0762970:five_prime_UTR
CAAGAGCTGTTGGATAACTA+TGG 0.418865 5_2:+21641754 Msa0762970:CDS
GGTGATCAAGGTGCATCATT+AGG 0.424389 5_2:+21637104 Msa0762970:CDS
CCGGTATAATTGACCTACTT+TGG 0.426163 5_2:-21642401 None:intergenic
AAATGTACACATCCCATGTT+AGG 0.435203 5_2:-21640851 None:intergenic
TCCAAATAGGAGTACCGATC+AGG 0.438387 5_2:-21640923 None:intergenic
ATATCTGCTCATGAATTTGA+AGG 0.439074 5_2:+21641400 Msa0762970:CDS
GTTGTATTGAAAATTGAAAT+GGG 0.439494 5_2:-21642265 None:intergenic
GTATATAGCGATTGCTCTGA+TGG 0.440944 5_2:+21642035 Msa0762970:three_prime_UTR
TAAAGTTGACCTACATTACT+TGG 0.445820 5_2:-21641784 None:intergenic
TGGGGTGAAAATTAGTGAGT+TGG 0.449163 5_2:+21636947 Msa0762970:five_prime_UTR
CCAAAGTAGGTCAATTATAC+CGG 0.454663 5_2:+21642401 Msa0762970:three_prime_UTR
ACTCAAATGCCACATCTACT+TGG 0.459803 5_2:+21641668 Msa0762970:CDS
TTCAATTTGAGGAAGAATTG+AGG 0.460770 5_2:+21636744 Msa0762970:five_prime_UTR
GAGAGATAAAACTAAGATAC+AGG 0.464718 5_2:+21641874 Msa0762970:exon
GAAGAACAATGATTTGGAGT+TGG 0.466825 5_2:+21636869 Msa0762970:five_prime_UTR
GATTTGGTTGATGACATTAG+TGG 0.467108 5_2:+21640944 Msa0762970:CDS
CATGGGATGTGTACATTTGT+TGG 0.467845 5_2:+21640856 Msa0762970:CDS
GAAAATGGGTCAGTTATTCC+GGG 0.468412 5_2:-21642215 None:intergenic
TTAGTGAGTTTGATGATGAA+TGG 0.469717 5_2:+21641179 Msa0762970:CDS
AACGTGCGACGTGGCTCGGA+TGG 0.474912 5_2:+21641980 Msa0762970:three_prime_UTR
AAAGAGGAAATGTGTGAGAG+AGG 0.479885 5_2:+21636770 Msa0762970:five_prime_UTR
TACTTGGATTGCAAGGAAGT+TGG 0.479955 5_2:+21641684 Msa0762970:CDS
GGTTTAGTGGATATGGAGAA+TGG 0.485042 5_2:-21636498 None:intergenic
AAGAGGAAATGTGTGAGAGA+GGG 0.485749 5_2:+21636771 Msa0762970:five_prime_UTR
GGTGAAAATTAGTGAGTTGG+AGG 0.492346 5_2:+21636950 Msa0762970:five_prime_UTR
TGGCTATGGTACACCTAACA+TGG 0.495098 5_2:+21640838 Msa0762970:CDS
CTGATGGAAACAATGTTTAG+TGG 0.498051 5_2:+21642051 Msa0762970:three_prime_UTR
ATAAATTGACACTTTAACTT+CGG 0.498881 5_2:-21641353 None:intergenic
GCTAAACGTGCGACGTGGCT+CGG 0.499279 5_2:+21641976 Msa0762970:three_prime_UTR
GAAAGTGATGAAATTCTCTC+AGG 0.500322 5_2:+21641229 Msa0762970:CDS
GTGTCAATTTATCCTAATAG+AGG 0.512081 5_2:+21641364 Msa0762970:CDS
CATGCATCTCCTGCACCAGA+TGG 0.517694 5_2:+21641586 Msa0762970:CDS
GGTTGATGACATTAGTGGAT+TGG 0.519201 5_2:+21640949 Msa0762970:CDS
AGTGGGATGACAGAAAGAAA+TGG 0.519842 5_2:-21641011 None:intergenic
AAAAGGAGGAAGGGTGATCA+AGG 0.524536 5_2:+21637092 Msa0762970:CDS
TGTTGAAAGTTGATCCTGAT+CGG 0.525860 5_2:+21640909 Msa0762970:CDS
GAATTGAACCTCCCATGAAA+AGG 0.526968 5_2:+21637075 Msa0762970:CDS
AGTGAGGCTAGGGTTGATGC+TGG 0.527054 5_2:+21636990 Msa0762970:CDS
TATGTTATCCCATCTGGTGC+AGG 0.528276 5_2:-21641595 None:intergenic
GTGCTGCAGATGGTTGTTGT+TGG 0.531203 5_2:+21641557 Msa0762970:CDS
GAAGAAGATTAGTGAGGCTA+GGG 0.531417 5_2:+21636980 Msa0762970:CDS
GGCATAGAACCAAGTAATGT+AGG 0.532485 5_2:+21641775 Msa0762970:CDS
AGAGATTGGGAATGAGATTG+TGG 0.534715 5_2:+21637034 Msa0762970:CDS
GTGAATTGTTGACTTACTAG+TGG 0.542926 5_2:-21641029 None:intergenic
GGAAGAATTGAGGAAGAAAG+AGG 0.549439 5_2:+21636754 Msa0762970:five_prime_UTR
AGATACTACTCCCTCCGTCC+CGG 0.549993 5_2:+21642197 Msa0762970:three_prime_UTR
GTTTAGTGGATATGGAGAAT+GGG 0.552165 5_2:-21636497 None:intergenic
ATGGTAACGAGACCCAGGTT+CGG 0.553279 5_2:-21636576 None:intergenic
GGGAAAGTGAAACTAGAAGT+TGG 0.554485 5_2:+21641421 Msa0762970:CDS
GGAGGTTCAATTCTTTGCAA+AGG 0.554500 5_2:-21637065 None:intergenic
ACGTGCGACGTGGCTCGGAT+GGG 0.554509 5_2:+21641981 Msa0762970:three_prime_UTR
GATCCAAATATGAGTTATGC+GGG 0.556800 5_2:+21641724 Msa0762970:CDS
GTCAGTTATTCCGGGACGGA+GGG 0.558569 5_2:-21642207 None:intergenic
AGAAAAGTGTATAAATAAAG+GGG 0.559725 5_2:-21642362 None:intergenic
TATCCTAATAGAGGTATCAA+AGG 0.564025 5_2:+21641373 Msa0762970:CDS
ACCTCCCATGAAAAGGAGGA+AGG 0.564040 5_2:+21637082 Msa0762970:CDS
TGAAGAAGATTAGTGAGGCT+AGG 0.565659 5_2:+21636979 Msa0762970:CDS
TAAGTAATGTTGTATAAACA+TGG 0.567349 5_2:-21641111 None:intergenic
GTGAGGCTAGGGTTGATGCT+GGG 0.572851 5_2:+21636991 Msa0762970:CDS
TATCTGCTCATGAATTTGAA+GGG 0.578816 5_2:+21641401 Msa0762970:CDS
CCACATCTACTTGGATTGCA+AGG 0.580563 5_2:+21641677 Msa0762970:CDS
TATAGAAGAGAGCTCACAAG+TGG 0.587113 5_2:+21640808 Msa0762970:intron
ATGCATCTCCTGCACCAGAT+GGG 0.589805 5_2:+21641587 Msa0762970:CDS
GGTCAGTTATTCCGGGACGG+AGG 0.593751 5_2:-21642208 None:intergenic
ACTCACTAAGTATAATATCA+GGG 0.594109 5_2:-21641165 None:intergenic
CCTCCCATGAAAAGGAGGAA+GGG 0.594242 5_2:+21637083 Msa0762970:CDS
CATCTCAAGAACATGACTAT+CGG 0.607263 5_2:-21641059 None:intergenic
CAAGTGGAGAACAATGGCTA+TGG 0.609468 5_2:+21640824 Msa0762970:CDS
CCTTGCAATCCAAGTAGATG+TGG 0.615060 5_2:-21641677 None:intergenic
TTCATATGGTAACGAGACCC+AGG 0.616968 5_2:-21636581 None:intergenic
GTTCGTGTACAAGAATGACC+TGG 0.619017 5_2:-21641637 None:intergenic
CAAAGTAGGTCAATTATACC+GGG 0.619620 5_2:+21642402 Msa0762970:three_prime_UTR
TTGAACCTCCCATGAAAAGG+AGG 0.626318 5_2:+21637078 Msa0762970:CDS
ACTGCTAGATGTGCTGCAGA+TGG 0.631118 5_2:+21641547 Msa0762970:CDS
GGGTATGAAACAAGAGCTGT+TGG 0.632928 5_2:+21641744 Msa0762970:CDS
AATAATGGACTCAATAATGG+AGG 0.634814 5_2:+21640977 Msa0762970:CDS
ATGGGTCAGTTATTCCGGGA+CGG 0.635699 5_2:-21642211 None:intergenic
TGATCCAAATATGAGTTATG+CGG 0.636992 5_2:+21641723 Msa0762970:CDS
ATAAACCCGAAACCGAACCT+GGG 0.644214 5_2:+21636564 Msa0762970:five_prime_UTR
TACAACATTACTTAATCACG+AGG 0.647600 5_2:+21641120 Msa0762970:CDS
TTCGTGTACAAGAATGACCT+GGG 0.654913 5_2:-21641636 None:intergenic
GTCTCGTTACCATATGAACA+TGG 0.657120 5_2:+21636586 Msa0762970:five_prime_UTR
GGCTATGGTACACCTAACAT+GGG 0.658576 5_2:+21640839 Msa0762970:CDS
TGAATTGTTGACTTACTAGT+GGG 0.663929 5_2:-21641028 None:intergenic
GAGATTAACATTGATGAGCA+TGG 0.664972 5_2:+21641286 Msa0762970:CDS
ATCAATGAAGAAGATTAGTG+AGG 0.665581 5_2:+21636974 Msa0762970:exon
GATGATGAATGGAGAGTGAG+TGG 0.667600 5_2:+21641190 Msa0762970:CDS
AAGATTAAGTCATACAACCC+AGG 0.678278 5_2:+21641619 Msa0762970:CDS
AGCTCACAAGTGGAGAACAA+TGG 0.680339 5_2:+21640818 Msa0762970:CDS
GATTGGGAATGAGATTGTGG+AGG 0.716006 5_2:+21637037 Msa0762970:CDS
ACAACATTACTTAATCACGA+GGG 0.719512 5_2:+21641121 Msa0762970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATGATTTAATTAATATTA+AGG + chr5_2:21638416-21638435 Msa0762970:intron 10.0%
!!! TACTTTTCTTTTTTTAATTA+CGG - chr5_2:21638985-21639004 None:intergenic 10.0%
!!! TTTAAAGAATTTAAAATTCT+AGG - chr5_2:21639228-21639247 None:intergenic 10.0%
!! AAAAAAAAAAGAATATCTTA+TGG + chr5_2:21640088-21640107 Msa0762970:intron 10.0%
!! ACAATTTAAGTGAAATTTAA+CGG + chr5_2:21637405-21637424 Msa0762970:intron 15.0%
!! AGAAAAATAATTTACTTCAT+GGG + chr5_2:21637699-21637718 Msa0762970:intron 15.0%
!!! TAAGTTATGATTTGTAATTA+AGG - chr5_2:21638023-21638042 None:intergenic 15.0%
!!! AGAGAAAACAATATATTTTT+TGG - chr5_2:21638228-21638247 None:intergenic 15.0%
!!! AATTAAATCATTGATTTCTT+AGG - chr5_2:21638409-21638428 None:intergenic 15.0%
!!! TATATAATAGTAGTTCTTTT+AGG + chr5_2:21638814-21638833 Msa0762970:intron 15.0%
!!! ATATAATAGTAGTTCTTTTA+GGG + chr5_2:21638815-21638834 Msa0762970:intron 15.0%
!!! ACTTTTCTTTTTTTAATTAC+GGG - chr5_2:21638984-21639003 None:intergenic 15.0%
!! GAAAAAAAAACTGAAATATA+AGG - chr5_2:21639050-21639069 None:intergenic 15.0%
!!! TCTTATAGTTTTATATACTT+TGG + chr5_2:21639276-21639295 Msa0762970:intron 15.0%
!! TAAAATTGTATATAAGCATA+TGG - chr5_2:21639832-21639851 None:intergenic 15.0%
!!! TTTTGCAATTTATATCAAAA+TGG + chr5_2:21640531-21640550 Msa0762970:intron 15.0%
!! TTTGCAATTTATATCAAAAT+GGG + chr5_2:21640532-21640551 Msa0762970:intron 15.0%
!!! TTTTTTTGACAATAGTATTT+TGG + chr5_2:21642143-21642162 Msa0762970:three_prime_UTR 15.0%
!!! GACATTTTTTTTTAGAAAAT+GGG - chr5_2:21642232-21642251 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr5_2:21642301-21642320 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr5_2:21642302-21642321 None:intergenic 15.0%
!! AAAGTAGAATATATTGTATT+GGG - chr5_2:21642342-21642361 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr5_2:21642366-21642385 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr5_2:21642367-21642386 None:intergenic 15.0%
!!! AATTGAAACTTTTGAAGAAA+GGG - chr5_2:21636524-21636543 None:intergenic 20.0%
!!! AAATTGAAACTTTTGAAGAA+AGG - chr5_2:21636525-21636544 None:intergenic 20.0%
!!! AAGTTAAGAAAACTAGTTTA+GGG + chr5_2:21636817-21636836 Msa0762970:five_prime_UTR 20.0%
!! ATCATTAGGTATGAAAATTA+TGG + chr5_2:21637118-21637137 Msa0762970:intron 20.0%
!!! TATTTTGTAAGAGAGTAAAT+TGG + chr5_2:21637480-21637499 Msa0762970:intron 20.0%
!!! ATTTTGTAAGAGAGTAAATT+GGG + chr5_2:21637481-21637500 Msa0762970:intron 20.0%
!! TTGAATTCAATACAAATGAT+AGG + chr5_2:21637554-21637573 Msa0762970:intron 20.0%
!! GAGAAAAATAATTTACTTCA+TGG + chr5_2:21637698-21637717 Msa0762970:intron 20.0%
!! CAATTTGATATATGAATTCT+TGG - chr5_2:21637736-21637755 None:intergenic 20.0%
!!! TTAATGCTTGTTCTTATTTA+AGG + chr5_2:21638380-21638399 Msa0762970:intron 20.0%
!! TTAAGGAATTACTATTTCAA+TGG + chr5_2:21638433-21638452 Msa0762970:intron 20.0%
!! TAAGGAATTACTATTTCAAT+GGG + chr5_2:21638434-21638453 Msa0762970:intron 20.0%
!! TGAAAATTCAATAACCAATT+CGG + chr5_2:21638460-21638479 Msa0762970:intron 20.0%
!! AATTCCAATCAATTTATGTA+AGG + chr5_2:21638499-21638518 Msa0762970:intron 20.0%
!! TGAAGAAATGTAATATTATG+AGG + chr5_2:21639176-21639195 Msa0762970:intron 20.0%
!! GAAGAAATGTAATATTATGA+GGG + chr5_2:21639177-21639196 Msa0762970:intron 20.0%
!!! CTCAATAGTTTTATATACTT+TGG + chr5_2:21639444-21639463 Msa0762970:intron 20.0%
!! AAGAAATAAAAATGAGCATA+TGG - chr5_2:21639771-21639790 None:intergenic 20.0%
!!! AATTAAGAATTTTAGAAGCA+TGG - chr5_2:21639956-21639975 None:intergenic 20.0%
!!! TACAAATAAATAAGAGCATA+TGG - chr5_2:21640007-21640026 None:intergenic 20.0%
!! ATACTCAAATCATAAACAAA+AGG - chr5_2:21640133-21640152 None:intergenic 20.0%
!! TAAGTAATGTTGTATAAACA+TGG - chr5_2:21641114-21641133 None:intergenic 20.0%
!! TTACATAGATGAAGAAAAAA+GGG + chr5_2:21641258-21641277 Msa0762970:CDS 20.0%
!!! ATAAATTGACACTTTAACTT+CGG - chr5_2:21641356-21641375 None:intergenic 20.0%
!!! TATTTTGGATACAAGTATTT+TGG + chr5_2:21642158-21642177 Msa0762970:three_prime_UTR 20.0%
!!! GGACATTTTTTTTTAGAAAA+TGG - chr5_2:21642233-21642252 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr5_2:21642268-21642287 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr5_2:21642269-21642288 None:intergenic 20.0%
!! GAAAGTAGAATATATTGTAT+TGG - chr5_2:21642343-21642362 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr5_2:21642365-21642384 None:intergenic 20.0%
!!! ATTGAAACTTTTGAAGAAAG+GGG - chr5_2:21636523-21636542 None:intergenic 25.0%
!! GAAGTTAAGAAAACTAGTTT+AGG + chr5_2:21636816-21636835 Msa0762970:five_prime_UTR 25.0%
! AGAAAAGAAGAACAATGATT+TGG + chr5_2:21636863-21636882 Msa0762970:five_prime_UTR 25.0%
! CAATATTAGTTATCACCTAA+GGG - chr5_2:21637369-21637388 None:intergenic 25.0%
! ACAATATTAGTTATCACCTA+AGG - chr5_2:21637370-21637389 None:intergenic 25.0%
! ATTTAAGTGAAATTTAACGG+AGG + chr5_2:21637408-21637427 Msa0762970:intron 25.0%
! TTTAAGTGAAATTTAACGGA+GGG + chr5_2:21637409-21637428 Msa0762970:intron 25.0%
! TTTCCTGTGTAAAATTGTTA+GGG + chr5_2:21637441-21637460 Msa0762970:intron 25.0%
! AAAATTGTTAGGGACTAATT+TGG + chr5_2:21637451-21637470 Msa0762970:intron 25.0%
! AAATTGTTAGGGACTAATTT+GGG + chr5_2:21637452-21637471 Msa0762970:intron 25.0%
! AAATGATAGGATTAATGCTT+TGG + chr5_2:21637567-21637586 Msa0762970:intron 25.0%
! TTCTTAGTAGTTAACATTCA+TGG - chr5_2:21637666-21637685 None:intergenic 25.0%
! TTATGTCCTATTGAAATCAA+TGG + chr5_2:21637828-21637847 Msa0762970:intron 25.0%
! AACATAAACTCATTTAGCAT+TGG + chr5_2:21637948-21637967 Msa0762970:intron 25.0%
! ACATAAACTCATTTAGCATT+GGG + chr5_2:21637949-21637968 Msa0762970:intron 25.0%
! TCAACCTTACATAAATTGAT+TGG - chr5_2:21638506-21638525 None:intergenic 25.0%
! AATCATGATTAAGATGTCAA+GGG + chr5_2:21638618-21638637 Msa0762970:intron 25.0%
!! AAACACACTCTAAATGATTT+TGG - chr5_2:21639078-21639097 None:intergenic 25.0%
!! AAAATCATTTAGAGTGTGTT+TGG + chr5_2:21639077-21639096 Msa0762970:intron 25.0%
!! TAAAACTATAAGAGTGTGTT+TGG - chr5_2:21639269-21639288 None:intergenic 25.0%
! ACAATGCTAATCTAATCAAT+AGG - chr5_2:21639362-21639381 None:intergenic 25.0%
! ACAATGCTAATCTAATCAAT+AGG - chr5_2:21639362-21639381 None:intergenic 25.0%
! AGGAATTGTTAGATTTGAAA+TGG + chr5_2:21640169-21640188 Msa0762970:intron 25.0%
! ATATATCCAAGCATCTTATA+TGG + chr5_2:21640360-21640379 Msa0762970:intron 25.0%
!!! TCTTGTTAGATTTGTTATTC+AGG - chr5_2:21640591-21640610 None:intergenic 25.0%
! TGAATAACAAATCTAACAAG+AGG + chr5_2:21640590-21640609 Msa0762970:intron 25.0%
!! ACAGTCTCTTTTATTCTATT+AGG + chr5_2:21640743-21640762 Msa0762970:intron 25.0%
!!! ATCAATAATGGACTCAATAA+TGG + chr5_2:21640974-21640993 Msa0762970:CDS 25.0%
! ACTCACTAAGTATAATATCA+GGG - chr5_2:21641168-21641187 None:intergenic 25.0%
! AACTCACTAAGTATAATATC+AGG - chr5_2:21641169-21641188 None:intergenic 25.0%
!! ATTTCATCACTTTCATTTTG+AGG - chr5_2:21641223-21641242 None:intergenic 25.0%
! GTTACATAGATGAAGAAAAA+AGG + chr5_2:21641257-21641276 Msa0762970:CDS 25.0%
!!! TAGAGATTTTGTTATACAAG+AGG + chr5_2:21641483-21641502 Msa0762970:CDS 25.0%
!!! AGAGATTTTGTTATACAAGA+GGG + chr5_2:21641484-21641503 Msa0762970:CDS 25.0%
! TAAGAGGATAAAAAACGAAA+AGG + chr5_2:21641516-21641535 Msa0762970:CDS 25.0%
!! CAATGTTTAGTGGTTTATTT+TGG + chr5_2:21642061-21642080 Msa0762970:three_prime_UTR 25.0%
!! TTGAAACTTTTGAAGAAAGG+GGG - chr5_2:21636522-21636541 None:intergenic 30.0%
! TCATGTTTTCCATGTTCATA+TGG - chr5_2:21636598-21636617 None:intergenic 30.0%
AAACATGAGCATTCAAGATT+TGG + chr5_2:21636610-21636629 Msa0762970:five_prime_UTR 30.0%
TCAACAGAAGTTTCAATTTG+AGG + chr5_2:21636733-21636752 Msa0762970:five_prime_UTR 30.0%
TTCAATTTGAGGAAGAATTG+AGG + chr5_2:21636744-21636763 Msa0762970:five_prime_UTR 30.0%
!!! TAGAAAAAGAGTTGGTGTTT+TGG + chr5_2:21636905-21636924 Msa0762970:five_prime_UTR 30.0%
AGAACGAGAAAAATGCATTT+GGG + chr5_2:21636928-21636947 Msa0762970:five_prime_UTR 30.0%
ATCAATGAAGAAGATTAGTG+AGG + chr5_2:21636974-21636993 Msa0762970:exon 30.0%
CTGTTGAAGAAAAAGAGATT+GGG + chr5_2:21637021-21637040 Msa0762970:CDS 30.0%
ACAATTGTCAGAGACTAATT+TGG - chr5_2:21637281-21637300 None:intergenic 30.0%
GTTTCCTGTGTAAAATTGTT+AGG + chr5_2:21637440-21637459 Msa0762970:intron 30.0%
AGATTGTTAGGGGTTAATTT+GGG + chr5_2:21637509-21637528 Msa0762970:intron 30.0%
TAATGCTTTGGTAGATTTCT+AGG + chr5_2:21637579-21637598 Msa0762970:intron 30.0%
!! ATTGGACCATTGATTTCAAT+AGG - chr5_2:21637837-21637856 None:intergenic 30.0%
ATTAAAAGCTCTCTTGCATA+AGG - chr5_2:21637989-21638008 None:intergenic 30.0%
! TTCCTTAATGATAAGTGTTG+GGG - chr5_2:21638147-21638166 None:intergenic 30.0%
GTTCCTTAATGATAAGTGTT+GGG - chr5_2:21638148-21638167 None:intergenic 30.0%
!! ACTTTTTGGTAACACAAAGA+TGG - chr5_2:21638170-21638189 None:intergenic 30.0%
!! ACACAAAGATGCTTACTTTT+TGG - chr5_2:21638184-21638203 None:intergenic 30.0%
ATTGATGCTCTATACTCATT+TGG + chr5_2:21638346-21638365 Msa0762970:intron 30.0%
ATCATGATTCATGACACAAT+TGG - chr5_2:21638607-21638626 None:intergenic 30.0%
GAATCATGATTAAGATGTCA+AGG + chr5_2:21638617-21638636 Msa0762970:intron 30.0%
GAATGGGAACAGTTATTTAA+AGG + chr5_2:21638690-21638709 Msa0762970:intron 30.0%
!! TCTTTTTAAGCAGTAAGCTT+AGG + chr5_2:21638747-21638766 Msa0762970:intron 30.0%
!! CTTTTTAAGCAGTAAGCTTA+GGG + chr5_2:21638748-21638767 Msa0762970:intron 30.0%
! GGAAGAAATATGTCATGTTT+TGG + chr5_2:21638769-21638788 Msa0762970:intron 30.0%
! TTTGGATTTAGAGTTTAGGA+GGG - chr5_2:21639023-21639042 None:intergenic 30.0%
! TGTGTTTGGATTTAGAGTTT+AGG - chr5_2:21639027-21639046 None:intergenic 30.0%
ACTGAAATATAAGGTGTGTT+TGG - chr5_2:21639041-21639060 None:intergenic 30.0%
!! ACTCTAAATGATTTTGGAAG+AGG - chr5_2:21639072-21639091 None:intergenic 30.0%
TGAGGGAATGTAATACTTTA+AGG + chr5_2:21639114-21639133 Msa0762970:intron 30.0%
TTAAGGTGAATTCCATTGTT+TGG + chr5_2:21639131-21639150 Msa0762970:intron 30.0%
TGTGTTTGGATGAAGTAATT+TGG - chr5_2:21639255-21639274 None:intergenic 30.0%
TGTTCTATTGTGTTCTTTGT+AGG - chr5_2:21639308-21639327 None:intergenic 30.0%
! TGTTTTATACTCCTCATTGT+TGG + chr5_2:21639334-21639353 Msa0762970:intron 30.0%
TGTTCTATTGTGTTCTTTGT+AGG - chr5_2:21639308-21639327 None:intergenic 30.0%
! TGTTTTATACTCCTCATTGT+TGG + chr5_2:21639334-21639353 Msa0762970:intron 30.0%
!!! TTTCTTGTTCCTGTTGTTTT+CGG + chr5_2:21639647-21639666 Msa0762970:intron 30.0%
AAAAAAACACCGAAAACAAC+AGG - chr5_2:21639659-21639678 None:intergenic 30.0%
!!! GTTGTTTTCGGTGTTTTTTT+AGG + chr5_2:21639659-21639678 Msa0762970:intron 30.0%
!!! GGTGTTTTTTTAGGATTACA+AGG + chr5_2:21639668-21639687 Msa0762970:intron 30.0%
!!! GTTTTTTTAGGATTACAAGG+AGG + chr5_2:21639671-21639690 Msa0762970:intron 30.0%
ACATCAAACAAACAAAGACA+TGG - chr5_2:21639869-21639888 None:intergenic 30.0%
! ATGTCTTTGTTTGTTTGATG+TGG + chr5_2:21639868-21639887 Msa0762970:intron 30.0%
! TGTCTTTGTTTGTTTGATGT+GGG + chr5_2:21639869-21639888 Msa0762970:intron 30.0%
ACATACATGGTTAGTACAAA+AGG - chr5_2:21639983-21640002 None:intergenic 30.0%
TCTCTTACATGAGTATCTTA+TGG + chr5_2:21640056-21640075 Msa0762970:intron 30.0%
! GTATTTGTCACTGTATTGAT+AGG + chr5_2:21640149-21640168 Msa0762970:intron 30.0%
GTAGGGAAAAATAATCTCTT+GGG + chr5_2:21640226-21640245 Msa0762970:intron 30.0%
TAGGGAAAAATAATCTCTTG+GGG + chr5_2:21640227-21640246 Msa0762970:intron 30.0%
!!! GGTTTCTAAGGTATTTTACA+TGG + chr5_2:21640279-21640298 Msa0762970:intron 30.0%
AAAAGCTGTCAAAAATGACA+AGG - chr5_2:21640672-21640691 None:intergenic 30.0%
!! AATAATGGACTCAATAATGG+AGG + chr5_2:21640977-21640996 Msa0762970:CDS 30.0%
!! TGAATTGTTGACTTACTAGT+GGG - chr5_2:21641031-21641050 None:intergenic 30.0%
TACAACATTACTTAATCACG+AGG + chr5_2:21641120-21641139 Msa0762970:CDS 30.0%
ACAACATTACTTAATCACGA+GGG + chr5_2:21641121-21641140 Msa0762970:CDS 30.0%
!! TTAGTGAGTTTGATGATGAA+TGG + chr5_2:21641179-21641198 Msa0762970:CDS 30.0%
GTGTCAATTTATCCTAATAG+AGG + chr5_2:21641364-21641383 Msa0762970:CDS 30.0%
!! TATCCTAATAGAGGTATCAA+AGG + chr5_2:21641373-21641392 Msa0762970:CDS 30.0%
TTTCCTTTGATACCTCTATT+AGG - chr5_2:21641379-21641398 None:intergenic 30.0%
ATATCTGCTCATGAATTTGA+AGG + chr5_2:21641400-21641419 Msa0762970:CDS 30.0%
TATCTGCTCATGAATTTGAA+GGG + chr5_2:21641401-21641420 Msa0762970:CDS 30.0%
!! GAGATTTTGTTATACAAGAG+GGG + chr5_2:21641485-21641504 Msa0762970:CDS 30.0%
ATCTTATATGTTATCCCATC+TGG - chr5_2:21641604-21641623 None:intergenic 30.0%
TGATCCAAATATGAGTTATG+CGG + chr5_2:21641723-21641742 Msa0762970:CDS 30.0%
TAAAGTTGACCTACATTACT+TGG - chr5_2:21641787-21641806 None:intergenic 30.0%
!!! GTATCTTAGTTTTATCTCTC+TGG - chr5_2:21641874-21641893 None:intergenic 30.0%
GAGAGATAAAACTAAGATAC+AGG + chr5_2:21641874-21641893 Msa0762970:exon 30.0%
!!! TGTTTAGTGGTTTATTTTGG+AGG + chr5_2:21642064-21642083 Msa0762970:three_prime_UTR 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG - chr5_2:21642254-21642273 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - chr5_2:21642255-21642274 None:intergenic 30.0%
! GTTTAGTGGATATGGAGAAT+GGG - chr5_2:21636500-21636519 None:intergenic 35.0%
! TCAATTTTTCGTGCTTCTCA+TGG + chr5_2:21636538-21636557 Msa0762970:five_prime_UTR 35.0%
!! GAAGATGTTGATTCTCTGTT+TGG - chr5_2:21636715-21636734 None:intergenic 35.0%
! GAAGAACAATGATTTGGAGT+TGG + chr5_2:21636869-21636888 Msa0762970:five_prime_UTR 35.0%
TCTGAGCTTAGAAAAAGAGT+TGG + chr5_2:21636897-21636916 Msa0762970:five_prime_UTR 35.0%
GAGAACGAGAAAAATGCATT+TGG + chr5_2:21636927-21636946 Msa0762970:five_prime_UTR 35.0%
GAACGAGAAAAATGCATTTG+GGG + chr5_2:21636929-21636948 Msa0762970:five_prime_UTR 35.0%
GCTGTTGAAGAAAAAGAGAT+TGG + chr5_2:21637020-21637039 Msa0762970:CDS 35.0%
GAATCGCGTTCAAATTGTTA+GGG - chr5_2:21637219-21637238 None:intergenic 35.0%
TGAATCGCGTTCAAATTGTT+AGG - chr5_2:21637220-21637239 None:intergenic 35.0%
!! ACGCGATTCAATTTTGTTTC+TGG + chr5_2:21637230-21637249 Msa0762970:intron 35.0%
ATTGTAGCACATTATTCCCA+TGG + chr5_2:21637296-21637315 Msa0762970:intron 35.0%
! ATGATTTAAAACACGCCCTT+AGG + chr5_2:21637351-21637370 Msa0762970:intron 35.0%
! AGTCCCTAACAATTTTACAC+AGG - chr5_2:21637447-21637466 None:intergenic 35.0%
CAGATTGTTAGGGGTTAATT+TGG + chr5_2:21637508-21637527 Msa0762970:intron 35.0%
TTTCCTGCTGTATAAAGACA+AGG + chr5_2:21637624-21637643 Msa0762970:intron 35.0%
CTGTATAAAGACAAGGTGTA+GGG + chr5_2:21637631-21637650 Msa0762970:intron 35.0%
! AATGGTCCAATTTGTTCAAC+TGG + chr5_2:21637846-21637865 Msa0762970:intron 35.0%
TCTAATTCGATGATGAGTGA+TGG - chr5_2:21637904-21637923 None:intergenic 35.0%
! CATTTAGCATTGGGTTGTTA+TGG + chr5_2:21637958-21637977 Msa0762970:intron 35.0%
!! TAATGATAAGTGTTGGGGAT+GGG - chr5_2:21638142-21638161 None:intergenic 35.0%
!! TTAATGATAAGTGTTGGGGA+TGG - chr5_2:21638143-21638162 None:intergenic 35.0%
ATCCCCAACACTTATCATTA+AGG + chr5_2:21638142-21638161 Msa0762970:intron 35.0%
GGTTCCTTAATGATAAGTGT+TGG - chr5_2:21638149-21638168 None:intergenic 35.0%
AACAGGACAACAACATTGAT+TGG - chr5_2:21638266-21638285 None:intergenic 35.0%
AATCAACACACGAATGAAAC+AGG - chr5_2:21638283-21638302 None:intergenic 35.0%
! TTTCTAGACTAGAGAAGCAT+GGG - chr5_2:21638321-21638340 None:intergenic 35.0%
! ATTTCTAGACTAGAGAAGCA+TGG - chr5_2:21638322-21638341 None:intergenic 35.0%
CATGATTTCATCTTCCGAAT+TGG - chr5_2:21638477-21638496 None:intergenic 35.0%
!! TATGAAAACTCCTCTAGGAT+AGG - chr5_2:21638543-21638562 None:intergenic 35.0%
TTGAGTATGAAAACTCCTCT+AGG - chr5_2:21638548-21638567 None:intergenic 35.0%
ATGATTAAGATGTCAAGGGT+TGG + chr5_2:21638622-21638641 Msa0762970:intron 35.0%
AAAGGTTAATGAGAGAAGAG+AGG + chr5_2:21638708-21638727 Msa0762970:intron 35.0%
AAGGTTAATGAGAGAAGAGA+GGG + chr5_2:21638709-21638728 Msa0762970:intron 35.0%
!!! CATGTTTTGGAGCTTTTATG+AGG + chr5_2:21638782-21638801 Msa0762970:intron 35.0%
!!! GTAGTTCTTTTAGGGTGTTT+TGG + chr5_2:21638823-21638842 Msa0762970:intron 35.0%
!!! TTCTTTTAGGGTGTTTTGGA+TGG + chr5_2:21638827-21638846 Msa0762970:intron 35.0%
! TTGGATTTAGAGTTTAGGAG+GGG - chr5_2:21639022-21639041 None:intergenic 35.0%
! GTTTGGATTTAGAGTTTAGG+AGG - chr5_2:21639024-21639043 None:intergenic 35.0%
! TCATTTAGAGTGTGTTTGGA+TGG + chr5_2:21639081-21639100 Msa0762970:intron 35.0%
! CATTTAGAGTGTGTTTGGAT+GGG + chr5_2:21639082-21639101 Msa0762970:intron 35.0%
! ATTTAGAGTGTGTTTGGATG+GGG + chr5_2:21639083-21639102 Msa0762970:intron 35.0%
GTGAATTCCATTGTTTGGAT+GGG + chr5_2:21639136-21639155 Msa0762970:intron 35.0%
TGAATTCCATTGTTTGGATG+GGG + chr5_2:21639137-21639156 Msa0762970:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr5_2:21639195-21639214 Msa0762970:intron 35.0%
ATCAATAGGAACCAACAATG+AGG - chr5_2:21639348-21639367 None:intergenic 35.0%
ATCAATAGGAACCAACAATG+AGG - chr5_2:21639348-21639367 None:intergenic 35.0%
TTAGGATTACAAGGAGGATT+TGG + chr5_2:21639677-21639696 Msa0762970:intron 35.0%
ACTGAGCTCATGTTATCTTT+AGG + chr5_2:21639919-21639938 Msa0762970:intron 35.0%
! AAGAGCATATGGTACATACA+TGG - chr5_2:21639996-21640015 None:intergenic 35.0%
GGTAGGGAAAAATAATCTCT+TGG + chr5_2:21640225-21640244 Msa0762970:intron 35.0%
TCTTGGGGAAAAAAAAATCC+AGG + chr5_2:21640242-21640261 Msa0762970:intron 35.0%
CTTGGGGAAAAAAAAATCCA+GGG + chr5_2:21640243-21640262 Msa0762970:intron 35.0%
!!! GGTATTTTACATGGTGCTAT+TGG + chr5_2:21640288-21640307 Msa0762970:intron 35.0%
AGGTTATTCTAGCAATCTGT+TGG - chr5_2:21640571-21640590 None:intergenic 35.0%
AAATCTAACAAGAGGTAGAG+AGG + chr5_2:21640598-21640617 Msa0762970:intron 35.0%
AGAGACTGTTAACAATGACA+GGG - chr5_2:21640732-21640751 None:intergenic 35.0%
AAGAGACTGTTAACAATGAC+AGG - chr5_2:21640733-21640752 None:intergenic 35.0%
AAATGTACACATCCCATGTT+AGG - chr5_2:21640854-21640873 None:intergenic 35.0%
!! CATTTGTTGGTGCATTTTGA+TGG + chr5_2:21640869-21640888 Msa0762970:CDS 35.0%
! TGTTGAAAGTTGATCCTGAT+CGG + chr5_2:21640909-21640928 Msa0762970:CDS 35.0%
GTCATCAACCAAATCCAAAT+AGG - chr5_2:21640939-21640958 None:intergenic 35.0%
!! GATTTGGTTGATGACATTAG+TGG + chr5_2:21640944-21640963 Msa0762970:CDS 35.0%
!! AGTGGATTGGCTATCAATAA+TGG + chr5_2:21640962-21640981 Msa0762970:CDS 35.0%
!! GTGAATTGTTGACTTACTAG+TGG - chr5_2:21641032-21641051 None:intergenic 35.0%
CATCTCAAGAACATGACTAT+CGG - chr5_2:21641062-21641081 None:intergenic 35.0%
!! TCATCACTTTCATTTTGAGG+AGG - chr5_2:21641220-21641239 None:intergenic 35.0%
GAAAGTGATGAAATTCTCTC+AGG + chr5_2:21641229-21641248 Msa0762970:CDS 35.0%
GAGATTAACATTGATGAGCA+TGG + chr5_2:21641286-21641305 Msa0762970:CDS 35.0%
AAGATTAAGTCATACAACCC+AGG + chr5_2:21641619-21641638 Msa0762970:CDS 35.0%
GAAGTTGGAAAGCAAGTTAA+AGG + chr5_2:21641699-21641718 Msa0762970:CDS 35.0%
GATCCAAATATGAGTTATGC+GGG + chr5_2:21641724-21641743 Msa0762970:CDS 35.0%
ATACCCGCATAACTCATATT+TGG - chr5_2:21641730-21641749 None:intergenic 35.0%
CTGATGGAAACAATGTTTAG+TGG + chr5_2:21642051-21642070 Msa0762970:three_prime_UTR 35.0%
!!! TGGTTTATTTTGGAGGATTC+TGG + chr5_2:21642071-21642090 Msa0762970:three_prime_UTR 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr5_2:21642219-21642238 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr5_2:21642388-21642407 Msa0762970:three_prime_UTR 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr5_2:21642401-21642420 Msa0762970:three_prime_UTR 35.0%
! GGTTTAGTGGATATGGAGAA+TGG - chr5_2:21636501-21636520 None:intergenic 40.0%
TTTGAAGAAAGGGGGTTTAG+TGG - chr5_2:21636514-21636533 None:intergenic 40.0%
GTCTCGTTACCATATGAACA+TGG + chr5_2:21636586-21636605 Msa0762970:five_prime_UTR 40.0%
GGAAGAATTGAGGAAGAAAG+AGG + chr5_2:21636754-21636773 Msa0762970:five_prime_UTR 40.0%
AAAGAGGAAATGTGTGAGAG+AGG + chr5_2:21636770-21636789 Msa0762970:five_prime_UTR 40.0%
AAGAGGAAATGTGTGAGAGA+GGG + chr5_2:21636771-21636790 Msa0762970:five_prime_UTR 40.0%
TGGGGTGAAAATTAGTGAGT+TGG + chr5_2:21636947-21636966 Msa0762970:five_prime_UTR 40.0%
! GGTGAAAATTAGTGAGTTGG+AGG + chr5_2:21636950-21636969 Msa0762970:five_prime_UTR 40.0%
TGAAGAAGATTAGTGAGGCT+AGG + chr5_2:21636979-21636998 Msa0762970:CDS 40.0%
GAAGAAGATTAGTGAGGCTA+GGG + chr5_2:21636980-21636999 Msa0762970:CDS 40.0%
AGAGATTGGGAATGAGATTG+TGG + chr5_2:21637034-21637053 Msa0762970:CDS 40.0%
GGAGGTTCAATTCTTTGCAA+AGG - chr5_2:21637068-21637087 None:intergenic 40.0%
GAATTGAACCTCCCATGAAA+AGG + chr5_2:21637075-21637094 Msa0762970:CDS 40.0%
AATCATACATGTCGCAGAGA+AGG - chr5_2:21637337-21637356 None:intergenic 40.0%
AATTGGGAGCTCAGATTGTT+AGG + chr5_2:21637497-21637516 Msa0762970:intron 40.0%
ATTGGGAGCTCAGATTGTTA+GGG + chr5_2:21637498-21637517 Msa0762970:intron 40.0%
CAGCAGGAAAATCACATTCT+CGG - chr5_2:21637614-21637633 None:intergenic 40.0%
ACACCTTGTCTTTATACAGC+AGG - chr5_2:21637630-21637649 None:intergenic 40.0%
GCTGTATAAAGACAAGGTGT+AGG + chr5_2:21637630-21637649 Msa0762970:intron 40.0%
CAAGCACCAGTTGAACAAAT+TGG - chr5_2:21637855-21637874 None:intergenic 40.0%
AAAGCTCTCTTGCATAAGGA+AGG - chr5_2:21637985-21638004 None:intergenic 40.0%
AATGACCATTCCTATCCTAG+AGG + chr5_2:21638530-21638549 Msa0762970:intron 40.0%
!! AAACTCCTCTAGGATAGGAA+TGG - chr5_2:21638538-21638557 None:intergenic 40.0%
GGTCTACAATCTGTTCTCTA+GGG - chr5_2:21638586-21638605 None:intergenic 40.0%
TGGTCTACAATCTGTTCTCT+AGG - chr5_2:21638587-21638606 None:intergenic 40.0%
TTAAGATGTCAAGGGTTGGA+AGG + chr5_2:21638626-21638645 Msa0762970:intron 40.0%
!!! TTTTAGGGTGTTTTGGATGG+AGG + chr5_2:21638830-21638849 Msa0762970:intron 40.0%
!! TTTAGGGTGTTTTGGATGGA+GGG + chr5_2:21638831-21638850 Msa0762970:intron 40.0%
! TTTAGAGTGTGTTTGGATGG+GGG + chr5_2:21639084-21639103 Msa0762970:intron 40.0%
GGTGAATTCCATTGTTTGGA+TGG + chr5_2:21639135-21639154 Msa0762970:intron 40.0%
GAATTCCATTGTTTGGATGG+GGG + chr5_2:21639138-21639157 Msa0762970:intron 40.0%
TACTCATGTAAGAGACAGCT+TGG - chr5_2:21640051-21640070 None:intergenic 40.0%
GGCATATCTGATGGTTTCTA+AGG + chr5_2:21640267-21640286 Msa0762970:intron 40.0%
! ATATATGATGACGACGACGA+TGG - chr5_2:21640346-21640365 None:intergenic 40.0%
! TCAAGCTTCAAGTTTGCGAA+AGG + chr5_2:21640639-21640658 Msa0762970:intron 40.0%
TATAGAAGAGAGCTCACAAG+TGG + chr5_2:21640808-21640827 Msa0762970:intron 40.0%
CATGGGATGTGTACATTTGT+TGG + chr5_2:21640856-21640875 Msa0762970:CDS 40.0%
TCGGTACTCCTATTTGGATT+TGG + chr5_2:21640928-21640947 Msa0762970:CDS 40.0%
!! GGTTGATGACATTAGTGGAT+TGG + chr5_2:21640949-21640968 Msa0762970:CDS 40.0%
AGTGGGATGACAGAAAGAAA+TGG - chr5_2:21641014-21641033 None:intergenic 40.0%
! AACTTCGGCAGAATTTTCAG+AGG - chr5_2:21641341-21641360 None:intergenic 40.0%
! AAGAGGGGTTTGAGATTAAG+AGG + chr5_2:21641500-21641519 Msa0762970:CDS 40.0%
TTCGTGTACAAGAATGACCT+GGG - chr5_2:21641639-21641658 None:intergenic 40.0%
ACTCAAATGCCACATCTACT+TGG + chr5_2:21641668-21641687 Msa0762970:CDS 40.0%
TACTTGGATTGCAAGGAAGT+TGG + chr5_2:21641684-21641703 Msa0762970:CDS 40.0%
CAAGAGCTGTTGGATAACTA+TGG + chr5_2:21641754-21641773 Msa0762970:CDS 40.0%
GGCATAGAACCAAGTAATGT+AGG + chr5_2:21641775-21641794 Msa0762970:CDS 40.0%
GTATATAGCGATTGCTCTGA+TGG + chr5_2:21642035-21642054 Msa0762970:three_prime_UTR 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr5_2:21642218-21642237 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG - chr5_2:21642404-21642423 None:intergenic 40.0%
! GAAAGGGGGTTTAGTGGATA+TGG - chr5_2:21636508-21636527 None:intergenic 45.0%
AATAAACCCGAAACCGAACC+TGG + chr5_2:21636563-21636582 Msa0762970:five_prime_UTR 45.0%
ATAAACCCGAAACCGAACCT+GGG + chr5_2:21636564-21636583 Msa0762970:five_prime_UTR 45.0%
! TTCATATGGTAACGAGACCC+AGG - chr5_2:21636584-21636603 None:intergenic 45.0%
GATTGGGAATGAGATTGTGG+AGG + chr5_2:21637037-21637056 Msa0762970:CDS 45.0%
TTGAACCTCCCATGAAAAGG+AGG + chr5_2:21637078-21637097 Msa0762970:CDS 45.0%
! TCACCCTTCCTCCTTTTCAT+GGG - chr5_2:21637089-21637108 None:intergenic 45.0%
! ATCACCCTTCCTCCTTTTCA+TGG - chr5_2:21637090-21637109 None:intergenic 45.0%
AAAAGGAGGAAGGGTGATCA+AGG + chr5_2:21637092-21637111 Msa0762970:CDS 45.0%
GGTGATCAAGGTGCATCATT+AGG + chr5_2:21637104-21637123 Msa0762970:CDS 45.0%
TTGGGAGCTCAGATTGTTAG+GGG + chr5_2:21637499-21637518 Msa0762970:intron 45.0%
TTCTCAACTTCTCTCTGCTG+TGG + chr5_2:21637791-21637810 Msa0762970:intron 45.0%
TCTCAACTTCTCTCTGCTGT+GGG + chr5_2:21637792-21637811 Msa0762970:intron 45.0%
! GTTGGAAGGTACACACAAGA+AGG + chr5_2:21638640-21638659 Msa0762970:intron 45.0%
CACAAGAAGGCTCGAGAAAA+TGG + chr5_2:21638653-21638672 Msa0762970:intron 45.0%
AGGCTCGAGAAAATGGTTGA+AGG + chr5_2:21638660-21638679 Msa0762970:intron 45.0%
! TGGTTGAAGGTGCACTTGAA+TGG + chr5_2:21638673-21638692 Msa0762970:intron 45.0%
! GGTTGAAGGTGCACTTGAAT+GGG + chr5_2:21638674-21638693 Msa0762970:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + chr5_2:21639096-21639115 Msa0762970:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG + chr5_2:21639097-21639116 Msa0762970:intron 45.0%
ACATTCCCCCATCCAAACAA+TGG - chr5_2:21639146-21639165 None:intergenic 45.0%
GCTCAGTTGTGATTCTATGC+AGG - chr5_2:21639906-21639925 None:intergenic 45.0%
AGCTCCACCCTCAATGATAA+AGG + chr5_2:21640202-21640221 Msa0762970:intron 45.0%
GCTCCACCCTCAATGATAAA+GGG + chr5_2:21640203-21640222 Msa0762970:intron 45.0%
CTCCACCCTCAATGATAAAG+GGG + chr5_2:21640204-21640223 Msa0762970:intron 45.0%
TACCCCTTTATCATTGAGGG+TGG - chr5_2:21640209-21640228 None:intergenic 45.0%
ACCCTCAATGATAAAGGGGT+AGG + chr5_2:21640208-21640227 Msa0762970:intron 45.0%
CCCTACCCCTTTATCATTGA+GGG - chr5_2:21640212-21640231 None:intergenic 45.0%
CCCTCAATGATAAAGGGGTA+GGG + chr5_2:21640209-21640228 Msa0762970:intron 45.0%
TCCCTACCCCTTTATCATTG+AGG - chr5_2:21640213-21640232 None:intergenic 45.0%
GGGGAAAAAAAAATCCAGGG+AGG + chr5_2:21640246-21640265 Msa0762970:intron 45.0%
CAGACGCCATATAAGATGCT+TGG - chr5_2:21640369-21640388 None:intergenic 45.0%
AGCTCACAAGTGGAGAACAA+TGG + chr5_2:21640818-21640837 Msa0762970:CDS 45.0%
CAAGTGGAGAACAATGGCTA+TGG + chr5_2:21640824-21640843 Msa0762970:CDS 45.0%
TGGCTATGGTACACCTAACA+TGG + chr5_2:21640838-21640857 Msa0762970:CDS 45.0%
GGCTATGGTACACCTAACAT+GGG + chr5_2:21640839-21640858 Msa0762970:CDS 45.0%
TCCTGATCGGTACTCCTATT+TGG + chr5_2:21640922-21640941 Msa0762970:CDS 45.0%
!! TCCAAATAGGAGTACCGATC+AGG - chr5_2:21640926-21640945 None:intergenic 45.0%
GATGATGAATGGAGAGTGAG+TGG + chr5_2:21641190-21641209 Msa0762970:CDS 45.0%
TATGTTATCCCATCTGGTGC+AGG - chr5_2:21641598-21641617 None:intergenic 45.0%
GTTCGTGTACAAGAATGACC+TGG - chr5_2:21641640-21641659 None:intergenic 45.0%
CCTTGCAATCCAAGTAGATG+TGG - chr5_2:21641680-21641699 None:intergenic 45.0%
CCACATCTACTTGGATTGCA+AGG + chr5_2:21641677-21641696 Msa0762970:CDS 45.0%
GGGTATGAAACAAGAGCTGT+TGG + chr5_2:21641744-21641763 Msa0762970:CDS 45.0%
AAAAAGCTAAACGTGCGACG+TGG + chr5_2:21641971-21641990 Msa0762970:three_prime_UTR 45.0%
! ATGGTAACGAGACCCAGGTT+CGG - chr5_2:21636579-21636598 None:intergenic 50.0%
ACCTCCCATGAAAAGGAGGA+AGG + chr5_2:21637082-21637101 Msa0762970:CDS 50.0%
CCTCCCATGAAAAGGAGGAA+GGG + chr5_2:21637083-21637102 Msa0762970:CDS 50.0%
CATTATTCCCATGGATCCCC+TGG + chr5_2:21637305-21637324 Msa0762970:intron 50.0%
TTTAGGAGGGGCAAAGAGGA+GGG - chr5_2:21639010-21639029 None:intergenic 50.0%
AGAGTTTAGGAGGGGCAAAG+AGG - chr5_2:21639014-21639033 None:intergenic 50.0%
! ATCCAGGGAGGCATATCTGA+TGG + chr5_2:21640258-21640277 Msa0762970:intron 50.0%
AACCATCAGATATGCCTCCC+TGG - chr5_2:21640263-21640282 None:intergenic 50.0%
ACTGCTAGATGTGCTGCAGA+TGG + chr5_2:21641547-21641566 Msa0762970:CDS 50.0%
GTGCTGCAGATGGTTGTTGT+TGG + chr5_2:21641557-21641576 Msa0762970:CDS 50.0%
ATGCATCTCCTGCACCAGAT+GGG + chr5_2:21641587-21641606 Msa0762970:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr5_2:21642214-21642233 None:intergenic 50.0%
! ACGAGACCCAGGTTCGGTTT+CGG - chr5_2:21636573-21636592 None:intergenic 55.0%
!! AGTGAGGCTAGGGTTGATGC+TGG + chr5_2:21636990-21637009 Msa0762970:CDS 55.0%
!! GTGAGGCTAGGGTTGATGCT+GGG + chr5_2:21636991-21637010 Msa0762970:CDS 55.0%
! CCCTTCCTCCTTTTCATGGG+AGG - chr5_2:21637086-21637105 None:intergenic 55.0%
GTTTAGGAGGGGCAAAGAGG+AGG - chr5_2:21639011-21639030 None:intergenic 55.0%
CATGCATCTCCTGCACCAGA+TGG + chr5_2:21641586-21641605 Msa0762970:CDS 55.0%
AGATACTACTCCCTCCGTCC+CGG + chr5_2:21642197-21642216 Msa0762970:three_prime_UTR 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr5_2:21642210-21642229 None:intergenic 55.0%
! CGAGACCCAGGTTCGGTTTC+GGG - chr5_2:21636572-21636591 None:intergenic 60.0%
GCAGCAACCAGGGGATCCAT+GGG - chr5_2:21637315-21637334 None:intergenic 60.0%
GCAGAGAAGGCAGCAACCAG+GGG - chr5_2:21637324-21637343 None:intergenic 60.0%
CGCAGAGAAGGCAGCAACCA+GGG - chr5_2:21637325-21637344 None:intergenic 60.0%
TCGCAGAGAAGGCAGCAACC+AGG - chr5_2:21637326-21637345 None:intergenic 60.0%
GCTAAACGTGCGACGTGGCT+CGG + chr5_2:21641976-21641995 Msa0762970:three_prime_UTR 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr5_2:21642211-21642230 None:intergenic 60.0%
GGCAGCAACCAGGGGATCCA+TGG - chr5_2:21637316-21637335 None:intergenic 65.0%
! AACGTGCGACGTGGCTCGGA+TGG + chr5_2:21641980-21641999 Msa0762970:three_prime_UTR 65.0%
! ACGTGCGACGTGGCTCGGAT+GGG + chr5_2:21641981-21642000 Msa0762970:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 21636436 21642424 21636436 ID=Msa0762970;Name=Msa0762970
chr5_2 mRNA 21636436 21642424 21636436 ID=Msa0762970-mRNA-1;Parent=Msa0762970;Name=Msa0762970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=542|1|1|1|0.5|0.33|3|467|405
chr5_2 exon 21636436 21637125 21636436 ID=Msa0762970-mRNA-1:exon:9001;Parent=Msa0762970-mRNA-1
chr5_2 exon 21640813 21641895 21640813 ID=Msa0762970-mRNA-1:exon:9002;Parent=Msa0762970-mRNA-1
chr5_2 exon 21641971 21642424 21641971 ID=Msa0762970-mRNA-1:exon:9003;Parent=Msa0762970-mRNA-1
chr5_2 five_prime_UTR 21636436 21636977 21636436 ID=Msa0762970-mRNA-1:five_prime_utr;Parent=Msa0762970-mRNA-1
chr5_2 CDS 21636978 21637125 21636978 ID=Msa0762970-mRNA-1:cds;Parent=Msa0762970-mRNA-1
chr5_2 CDS 21640813 21641882 21640813 ID=Msa0762970-mRNA-1:cds;Parent=Msa0762970-mRNA-1
chr5_2 three_prime_UTR 21641883 21641895 21641883 ID=Msa0762970-mRNA-1:three_prime_utr;Parent=Msa0762970-mRNA-1
chr5_2 three_prime_UTR 21641971 21642424 21641971 ID=Msa0762970-mRNA-1:three_prime_utr;Parent=Msa0762970-mRNA-1
Gene Sequence

>Msa0762970

ATGAAGAAGATTAGTGAGGCTAGGGTTGATGCTGGGATTACTGCTGTTGAAGAAAAAGAGATTGGGAATGAGATTGTGGAGGCTGCTCCTTTGCAAAGAATTGAACCTCCCATGAAAAGGAGGAAGGGTGATCAAGGTGCATCATTAGAAGAGAGCTCACAAGTGGAGAACAATGGCTATGGTACACCTAACATGGGATGTGTACATTTGTTGGTGCATTTTGATGGAGAAAGAAGTACACTTTTGTTGAAAGTTGATCCTGATCGGTACTCCTATTTGGATTTGGTTGATGACATTAGTGGATTGGCTATCAATAATGGACTCAATAATGGAGGTTTGTCTTTTGCCATTTCTTTCTGTCATCCCACTAGTAAGTCAACAATTCACATCAAAACCGATAGTCATGTTCTTGAGATGTTCAAGCTTTATAACATGTGTAGTTGTATCCATGTTTATACAACATTACTTAATCACGAGGGTGATGAAGTTGTTAGTCAAGTCCCTGATATTATACTTAGTGAGTTTGATGATGAATGGAGAGTGAGTGGTGAGCCTCCTCAAAATGAAAGTGATGAAATTCTCTCAGGTTCTAGTTACATAGATGAAGAAAAAAGGGATAATGAGATTAACATTGATGAGCATGGTGATTATGAAGAAAAACATGATCTTATTGCCTCTGAAAATTCTGCCGAAGTTAAAGTGTCAATTTATCCTAATAGAGGTATCAAAGGAAAAATATCTGCTCATGAATTTGAAGGGAAAGTGAAACTAGAAGTTGGTCTATTGTTTGGTGATGTGAATGAGTTTAGAACTGCTCTTAGAGATTTTGTTATACAAGAGGGGTTTGAGATTAAGAGGATAAAAAACGAAAAGGCAAGAGTAACTGCTAGATGTGCTGCAGATGGTTGTTGTTGGCGTATTCATGCATCTCCTGCACCAGATGGGATAACATATAAGATTAAGTCATACAACCCAGGTCATTCTTGTACACGAACAACAAAGAACTCAAATGCCACATCTACTTGGATTGCAAGGAAGTTGGAAAGCAAGTTAAAGGCTGATCCAAATATGAGTTATGCGGGTATGAAACAAGAGCTGTTGGATAACTATGGCATAGAACCAAGTAATGTAGGTCAACTTTATCGTGCAAGAAAAAAGTTGAGACAAGACGCAAAAGAGTTTCATGCACTTTCATATAATGATTTGCCAGAGAGATAA

Protein sequence

>Msa0762970

MKKISEARVDAGITAVEEKEIGNEIVEAAPLQRIEPPMKRRKGDQGASLEESSQVENNGYGTPNMGCVHLLVHFDGERSTLLLKVDPDRYSYLDLVDDISGLAINNGLNNGGLSFAISFCHPTSKSTIHIKTDSHVLEMFKLYNMCSCIHVYTTLLNHEGDEVVSQVPDIILSEFDDEWRVSGEPPQNESDEILSGSSYIDEEKRDNEINIDEHGDYEEKHDLIASENSAEVKVSIYPNRGIKGKISAHEFEGKVKLEVGLLFGDVNEFRTALRDFVIQEGFEIKRIKNEKARVTARCAADGCCWRIHASPAPDGITYKIKSYNPGHSCTRTTKNSNATSTWIARKLESKLKADPNMSYAGMKQELLDNYGIEPSNVGQLYRARKKLRQDAKEFHALSYNDLPER*