AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0022090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022090 MtrunA17_Chr1g0174161 95.356 323 13 1 1 321 1 323 0.0 588
Msa0022090 MtrunA17_Chr7g0258161 67.055 343 85 7 1 321 1 337 1.34e-133 384
Msa0022090 MtrunA17_Chr4g0035101 55.147 136 56 1 113 243 93 228 1.93e-41 147
Msa0022090 MtrunA17_Chr8g0385911 70.408 98 24 3 149 241 134 231 7.34e-40 143
Msa0022090 MtrunA17_Chr7g0234761 44.500 200 87 6 102 283 243 436 1.63e-39 145
Msa0022090 MtrunA17_Chr1g0152131 55.200 125 53 1 119 243 224 345 2.17e-39 144
Msa0022090 MtrunA17_Chr3g0144641 68.041 97 31 0 155 251 188 284 2.44e-39 143
Msa0022090 MtrunA17_Chr8g0365941 55.224 134 51 3 110 240 260 387 1.31e-38 142
Msa0022090 MtrunA17_Chr5g0421111 70.787 89 26 0 155 243 362 450 5.14e-38 142
Msa0022090 MtrunA17_Chr8g0339091 59.804 102 41 0 155 256 288 389 7.94e-37 138
Msa0022090 MtrunA17_Chr3g0131771 56.522 115 41 2 155 266 144 252 2.07e-36 134
Msa0022090 MtrunA17_Chr8g0363921 69.412 85 26 0 155 239 148 232 4.86e-36 131
Msa0022090 MtrunA17_Chr5g0415291 52.756 127 60 0 103 229 57 183 6.09e-35 127
Msa0022090 MtrunA17_Chr6g0484271 43.312 157 72 2 82 235 90 232 1.78e-31 119
Msa0022090 MtrunA17_Chr4g0074161 46.364 110 48 4 154 258 202 305 3.93e-18 84.7
Msa0022090 MtrunA17_Chr1g0190731 38.889 126 69 4 158 281 193 312 4.03e-17 81.3
Msa0022090 MtrunA17_Chr1g0182791 46.377 69 36 1 160 228 319 386 1.35e-12 68.6
Msa0022090 MtrunA17_Chr4g0032951 47.692 65 34 0 158 222 355 419 2.70e-12 67.4
Msa0022090 MtrunA17_Chr4g0014771 47.692 65 34 0 158 222 118 182 2.96e-12 64.7
Msa0022090 MtrunA17_Chr1g0184841 49.425 87 38 3 158 239 120 205 7.80e-12 65.1
Msa0022090 MtrunA17_Chr1g0193321 41.429 70 40 1 161 230 465 533 1.13e-11 65.9
Msa0022090 MtrunA17_Chr3g0095391 31.429 105 70 2 161 265 312 414 1.34e-11 65.5
Msa0022090 MtrunA17_Chr1g0174271 44.928 69 38 0 158 226 298 366 4.31e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022090 AT3G57800.2 50.299 334 117 10 2 292 19 346 5.79e-86 264
Msa0022090 AT2G42300.1 49.196 311 111 8 6 293 20 306 1.01e-79 246
Msa0022090 AT3G57800.1 43.832 381 118 11 2 292 19 393 2.11e-76 241
Msa0022090 AT2G42300.4 50.958 261 95 5 6 243 20 270 7.06e-70 219
Msa0022090 AT1G26260.4 36.981 265 110 7 58 266 67 330 1.61e-44 157
Msa0022090 AT1G26260.1 36.981 265 110 7 58 266 67 330 1.61e-44 157
Msa0022090 AT1G26260.6 36.981 265 110 7 58 266 67 330 1.61e-44 157
Msa0022090 AT1G26260.2 36.981 265 110 7 58 266 67 330 1.61e-44 157
Msa0022090 AT1G26260.3 42.929 198 91 5 90 266 83 279 4.34e-43 152
Msa0022090 AT1G26260.5 42.929 198 91 5 90 266 112 308 8.31e-43 152
Msa0022090 AT3G07340.2 40.784 255 99 7 71 292 138 373 2.40e-42 152
Msa0022090 AT3G07340.1 41.107 253 97 7 73 292 140 373 3.76e-42 152
Msa0022090 AT3G23690.1 48.454 194 83 6 115 293 144 335 2.55e-41 148
Msa0022090 AT2G42300.5 44.186 215 87 5 6 197 20 224 4.70e-41 143
Msa0022090 AT2G42300.3 44.186 215 87 5 6 197 20 224 4.70e-41 143
Msa0022090 AT2G42300.2 44.186 215 87 5 6 197 20 224 4.92e-41 144
Msa0022090 AT1G68920.1 60.684 117 40 2 155 266 300 415 7.42e-41 149
Msa0022090 AT1G68920.4 60.684 117 40 2 155 266 300 415 7.42e-41 149
Msa0022090 AT1G68920.2 60.684 117 40 2 155 266 300 415 7.42e-41 149
Msa0022090 AT1G68920.3 60.684 117 40 2 155 266 299 414 7.54e-41 149
Msa0022090 AT1G10120.2 55.970 134 55 2 123 253 169 301 9.96e-40 144
Msa0022090 AT1G10120.1 55.970 134 55 2 123 253 169 301 9.96e-40 144
Msa0022090 AT4G34530.1 55.814 129 50 2 151 279 165 286 6.07e-39 141
Msa0022090 AT5G50915.3 45.604 182 84 8 112 283 89 265 5.33e-38 137
Msa0022090 AT5G50915.4 45.604 182 84 8 112 283 89 265 5.33e-38 137
Msa0022090 AT2G18300.1 44.242 165 67 3 120 265 130 288 8.55e-38 138
Msa0022090 AT5G50915.1 48.780 164 69 8 112 265 89 247 1.20e-37 136
Msa0022090 AT5G50915.2 48.780 164 69 8 112 265 89 247 1.20e-37 136
Msa0022090 AT5G48560.2 68.478 92 28 1 155 245 298 389 1.64e-37 140
Msa0022090 AT5G48560.1 68.478 92 28 1 155 245 298 389 2.66e-37 140
Msa0022090 AT2G18300.2 43.713 167 67 4 120 265 130 290 2.03e-36 134
Msa0022090 AT4G36540.2 48.921 139 64 3 113 244 89 227 3.19e-36 133
Msa0022090 AT4G36540.1 49.275 138 63 3 113 243 89 226 3.75e-36 133
Msa0022090 AT2G18300.3 45.860 157 60 3 120 257 130 280 5.33e-36 134
Msa0022090 AT1G59640.1 78.667 75 16 0 155 229 133 207 1.02e-35 130
Msa0022090 AT1G59640.2 78.667 75 16 0 155 229 133 207 9.24e-35 130
Msa0022090 AT1G18400.2 68.750 80 25 0 156 235 143 222 2.80e-32 121
Msa0022090 AT1G18400.1 68.750 80 25 0 156 235 143 222 4.04e-32 121
Msa0022090 AT5G62610.2 72.000 75 21 0 155 229 150 224 7.77e-32 120
Msa0022090 AT5G62610.1 72.000 75 21 0 155 229 150 224 7.77e-32 120
Msa0022090 AT1G73830.2 68.354 79 25 0 157 235 146 224 1.19e-31 120
Msa0022090 AT1G73830.1 68.354 79 25 0 157 235 146 224 1.25e-31 120
Msa0022090 AT1G25330.1 66.250 80 27 0 156 235 102 181 2.17e-30 115
Msa0022090 AT2G24260.2 60.606 66 25 1 158 223 35 99 3.27e-17 80.5
Msa0022090 AT4G30980.1 62.121 66 24 1 158 223 130 194 4.14e-17 81.3
Msa0022090 AT4G30980.2 62.121 66 24 1 158 223 178 242 5.76e-17 81.3
Msa0022090 AT2G24260.1 60.606 66 25 1 158 223 138 202 8.85e-17 80.5
Msa0022090 AT5G58010.1 61.194 67 25 1 157 223 98 163 1.06e-16 79.7
Msa0022090 AT2G20180.7 40.179 112 52 3 115 223 172 271 2.58e-15 76.6
Msa0022090 AT2G20180.1 40.179 112 52 3 115 223 172 271 2.58e-15 76.6
Msa0022090 AT2G20180.5 40.179 112 52 3 115 223 172 271 2.58e-15 76.6
Msa0022090 AT2G20180.4 40.179 112 52 3 115 223 243 342 3.43e-15 76.6
Msa0022090 AT2G20180.6 40.179 112 52 3 115 223 243 342 3.43e-15 76.6
Msa0022090 AT2G20180.2 40.179 112 52 3 115 223 243 342 3.43e-15 76.6
Msa0022090 AT2G20180.3 40.179 112 52 3 115 223 243 342 3.43e-15 76.6
Msa0022090 AT2G20180.8 39.450 109 51 3 115 220 243 339 6.22e-14 72.4
Msa0022090 AT4G28800.1 42.466 73 41 1 161 233 252 323 1.21e-12 68.9
Msa0022090 AT1G09530.3 46.032 63 33 1 161 223 340 401 5.90e-12 67.0
Msa0022090 AT1G09530.2 46.032 63 33 1 161 223 340 401 5.90e-12 67.0
Msa0022090 AT1G09530.5 46.032 63 33 1 161 223 340 401 5.90e-12 67.0
Msa0022090 AT1G09530.1 46.032 63 33 1 161 223 340 401 5.90e-12 67.0
Msa0022090 AT1G09530.4 46.032 63 33 1 161 223 340 401 5.90e-12 67.0
Msa0022090 AT1G09530.6 46.032 63 33 1 161 223 340 401 5.90e-12 67.0
Msa0022090 AT4G28815.2 36.082 97 57 2 161 253 71 166 7.71e-12 64.7
Msa0022090 AT4G28790.1 41.667 72 41 1 161 232 274 344 9.65e-12 66.2
Msa0022090 AT4G28815.1 36.082 97 57 2 161 253 147 242 3.15e-11 63.9
Msa0022090 AT2G42280.1 37.778 90 55 1 132 221 254 342 3.69e-11 63.9
Msa0022090 AT4G02590.3 48.837 86 38 3 158 238 83 167 5.75e-11 62.4
Msa0022090 AT4G02590.2 48.837 86 38 3 158 238 146 230 7.31e-11 62.8
Msa0022090 AT4G02590.1 48.837 86 38 3 158 238 146 230 7.31e-11 62.8

Find 118 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCATTGTGTGGGATTTC+TGG 0.105980 1_1:+40698402 None:intergenic
TCAAGGTTGAAATCAATTAT+TGG 0.224458 1_1:+40699273 None:intergenic
TGTTTGTAATTGTAATAAAA+AGG 0.258988 1_1:+40703422 None:intergenic
TGCATTCCACCAACCACTTT+GGG 0.284445 1_1:-40698346 Msa0022090:CDS
ATCAGGAACAGCATTGGTTT+TGG 0.289474 1_1:-40699925 Msa0022090:CDS
CAAGGTTGAAATCAATTATT+GGG 0.303962 1_1:+40699274 None:intergenic
CTTCACTCGTCGGAGATTAC+CGG 0.318302 1_1:-40702979 Msa0022090:CDS
AAATTTCCTTTACAGATATC+AGG 0.320893 1_1:-40699942 Msa0022090:intron
CAGTATGTATACTAACTATA+GGG 0.322900 1_1:-40697692 Msa0022090:three_prime_UTR
TATGACTCATCGGCAAATTC+AGG 0.337138 1_1:-40698270 Msa0022090:CDS
CGGAAGCTCCTCGCCGTTGC+CGG 0.341941 1_1:+40702574 None:intergenic
TATAGGGGTCATTCAGTCTT+AGG 0.342811 1_1:-40697676 Msa0022090:three_prime_UTR
GTTTGGATATCTCATATAAA+CGG 0.356627 1_1:+40703357 None:intergenic
TCAGTATGTATACTAACTAT+AGG 0.357630 1_1:-40697693 Msa0022090:three_prime_UTR
TTTCTGGGGTCATGAAATTA+GGG 0.358922 1_1:+40698307 None:intergenic
CCCGGCGAAAACGGAGAATC+TGG 0.372380 1_1:+40702873 None:intergenic
TTTCTCAAACCGGTTCATTT+CGG 0.375009 1_1:-40703148 Msa0022090:five_prime_UTR
GTTCTGTGTTGGTTCTTCTC+TGG 0.383542 1_1:+40703285 None:intergenic
ATGCATTCCACCAACCACTT+TGG 0.397314 1_1:-40698347 Msa0022090:CDS
TACTAAGTTAGTCGAGTTTG+TGG 0.403033 1_1:+40702843 None:intergenic
ATCGCCGCCGACGAGAATTC+CGG 0.408348 1_1:-40702593 Msa0022090:CDS
AGTTAACTGTGTAAGTTGTT+GGG 0.409414 1_1:+40703184 None:intergenic
GGAGAATGAAGGAGGGAAAG+AGG 0.412243 1_1:+40703207 None:intergenic
TCAGAGTCGGTTGGAAAACC+TGG 0.413514 1_1:-40697784 Msa0022090:three_prime_UTR
GGAAGGGAAAGTTAAATTAC+CGG 0.419559 1_1:+40702921 None:intergenic
CGAATTCCAAGAGTGCAAAA+AGG 0.420797 1_1:-40702759 Msa0022090:CDS
GAGTTCGCTGTTTCCGTCGC+CGG 0.429642 1_1:+40703048 None:intergenic
CAAGTCAGTGGATAGGGTTT+CGG 0.429991 1_1:+40702949 None:intergenic
TGCTGTCTGTTTCCATTGTG+TGG 0.436586 1_1:+40698393 None:intergenic
TTTGGATATCTCATATAAAC+GGG 0.441271 1_1:+40703358 None:intergenic
CAAACCGGTTCATTTCGGTT+TGG 0.446795 1_1:-40703143 Msa0022090:five_prime_UTR
AAATTAGCCTTGATTTGAGC+AGG 0.448707 1_1:-40697843 Msa0022090:three_prime_UTR
CGAAGAAATTCAAGGAATCA+TGG 0.453331 1_1:-40703073 Msa0022090:CDS
AGATGAAGATGGAGCTATGA+AGG 0.454767 1_1:-40697930 Msa0022090:CDS
CTTCTTCCTTGCTAGCCTGT+TGG 0.454803 1_1:+40697750 None:intergenic
GACCAAACCTTGTTGCAACC+TGG 0.459346 1_1:+40701526 None:intergenic
CTGTTGGCTGAATAAAATCC+AGG 0.459891 1_1:+40697766 None:intergenic
ATAATGTGCTTGTTCTGTGT+TGG 0.461228 1_1:+40703274 None:intergenic
GTTTGAGAAAACTTGAAAAC+CGG 0.466672 1_1:+40703161 None:intergenic
GAGTTAACTGTGTAAGTTGT+TGG 0.466741 1_1:+40703183 None:intergenic
AATGAAACTGTTGCAAGAGC+TGG 0.476800 1_1:-40701551 Msa0022090:CDS
ACAGCGGGTGAAACTGCGTT+AGG 0.478912 1_1:+40698429 None:intergenic
GAGGAGAGAAAGAAAGAGAG+TGG 0.488095 1_1:+40703226 None:intergenic
CAATTCAACGAAGAAATTCA+AGG 0.489910 1_1:-40703081 Msa0022090:CDS
GTGTTGCAAGTCAGTGGATA+GGG 0.490731 1_1:+40702943 None:intergenic
TGAACCAAACCGAAATGAAC+CGG 0.491780 1_1:+40703139 None:intergenic
TGTCCTCTGTTTGTCAGAGT+CGG 0.492707 1_1:-40697797 Msa0022090:three_prime_UTR
TTACCCTTTCTGCTAAGCTA+TGG 0.495150 1_1:+40702510 None:intergenic
ACCAAACCTTGTTGCAACCT+GGG 0.495296 1_1:+40701527 None:intergenic
GCACTCAAATCAGATGAAGA+TGG 0.500237 1_1:-40697941 Msa0022090:CDS
GAGCAGGCACAACATTCAGC+AGG 0.501059 1_1:-40697827 Msa0022090:three_prime_UTR
GGGATTTCTGGCCACACAGC+GGG 0.504729 1_1:+40698414 None:intergenic
TCAACCAACGCGGCGTTGGA+AGG 0.508170 1_1:+40702904 None:intergenic
CTCTGTTTGTCAGAGTCGGT+TGG 0.512545 1_1:-40697793 Msa0022090:three_prime_UTR
CTGTTGCAAGAGCTGGTCCC+AGG 0.513301 1_1:-40701544 Msa0022090:CDS
TTGTAACGGAAGTGTTGAAT+AGG 0.513389 1_1:+40703398 None:intergenic
AGGAATCATGGCTCCGGCGA+CGG 0.514735 1_1:-40703061 Msa0022090:CDS
GCTGTCTGTTTCCATTGTGT+GGG 0.520796 1_1:+40698394 None:intergenic
TAGCCATAGCTTAGCAGAAA+GGG 0.520877 1_1:-40702513 Msa0022090:intron
CTTAGTAAAGGATGAGCTAC+CGG 0.525432 1_1:-40702827 Msa0022090:CDS
AGCTCGACGACCTGCGTCGG+TGG 0.526023 1_1:+40703003 None:intergenic
AAGGAAGGAACGAGAAAAGA+AGG 0.526931 1_1:-40702740 Msa0022090:intron
GTTAACTGTGTAAGTTGTTG+GGG 0.546502 1_1:+40703185 None:intergenic
ACAGATATCAGGAACAGCAT+TGG 0.547071 1_1:-40699931 Msa0022090:intron
CATCCACCTTCTTCAGTCTC+CGG 0.551105 1_1:+40702808 None:intergenic
GGTGTTGCAAGTCAGTGGAT+AGG 0.551839 1_1:+40702942 None:intergenic
AATTCAAGGAATCATGGCTC+CGG 0.553332 1_1:-40703067 Msa0022090:CDS
CAACCAACGCGGCGTTGGAA+GGG 0.553760 1_1:+40702905 None:intergenic
GGATTCGAATTCGATGGTTG+AGG 0.554329 1_1:+40703443 None:intergenic
TTTCCCTTCCAACGCCGCGT+TGG 0.556664 1_1:-40702908 Msa0022090:CDS
TGTTGTGCCTGCTCAAATCA+AGG 0.557928 1_1:+40697836 None:intergenic
AAACTCGACTAACTTAGTAA+AGG 0.561284 1_1:-40702839 Msa0022090:CDS
ATTCAGCCAACAGGCTAGCA+AGG 0.565949 1_1:-40697756 Msa0022090:three_prime_UTR
CAGCGGGTGAAACTGCGTTA+GGG 0.566488 1_1:+40698430 None:intergenic
GCCGACGAGAATTCCGGCAA+CGG 0.567888 1_1:-40702587 Msa0022090:CDS
GAATTTCCGTACTGTTGTAA+CGG 0.568743 1_1:+40703384 None:intergenic
GAGCTACCGGAGACTGAAGA+AGG 0.570935 1_1:-40702814 Msa0022090:CDS
CTGCAGCTAATATGCTGTCA+AGG 0.571111 1_1:+40699256 None:intergenic
CATTCTGTAGAGATTGCACA+TGG 0.585158 1_1:+40699889 None:intergenic
GTCAGTGGATAGGGTTTCGG+CGG 0.587492 1_1:+40702952 None:intergenic
ACTTCTAAGTTATGACTCAT+CGG 0.587921 1_1:-40698280 Msa0022090:CDS
ACACTTCCGTTACAACAGTA+CGG 0.590861 1_1:-40703390 Msa0022090:five_prime_UTR
GCGTTCAACCAACGCGGCGT+TGG 0.594819 1_1:+40702900 None:intergenic
GCCGTTGCCGGAATTCTCGT+CGG 0.595821 1_1:+40702586 None:intergenic
AAAGCAACGTTGTTACGCTA+CGG 0.596953 1_1:+40703325 None:intergenic
ACAACTTACACAGTTAACTC+CGG 0.599212 1_1:-40703180 Msa0022090:five_prime_UTR
GACAGCAATTTCAGCAATCG+TGG 0.599757 1_1:-40698377 Msa0022090:CDS
ATAGCCATAGCTTAGCAGAA+AGG 0.599793 1_1:-40702514 Msa0022090:CDS
CAGATTGTAAAATCATTGAA+CGG 0.599861 1_1:-40697640 Msa0022090:three_prime_UTR
TATCCACTGACTTGCAACAC+CGG 0.603238 1_1:-40702940 Msa0022090:CDS
CATTCCACCAACCACTTTGG+GGG 0.604196 1_1:-40698344 Msa0022090:CDS
CGAACTCGAACGTGAACGTA+CGG 0.605120 1_1:+40702554 None:intergenic
CGTCGAGCTTCTTCACTCGT+CGG 0.607615 1_1:-40702989 Msa0022090:CDS
GCATTCCACCAACCACTTTG+GGG 0.608496 1_1:-40698345 Msa0022090:CDS
GAATTGAATCGACTCGAACG+TGG 0.610167 1_1:+40703098 None:intergenic
TCTTGAACTTCCACCGACGC+AGG 0.611122 1_1:-40703013 Msa0022090:CDS
TTACCGGTGTTGCAAGTCAG+TGG 0.611762 1_1:+40702937 None:intergenic
AGTATGTATACTAACTATAG+GGG 0.615156 1_1:-40697691 Msa0022090:three_prime_UTR
GGTTTGGTTCAGTTGAACGA+TGG 0.616544 1_1:-40703127 Msa0022090:exon
GCAATCTCTACAGAATGAAG+TGG 0.617385 1_1:-40699883 Msa0022090:CDS
GATGAAGATGGAGCTATGAA+GGG 0.619479 1_1:-40697929 Msa0022090:CDS
ATCTCTACAGAATGAAGTGG+AGG 0.623403 1_1:-40699880 Msa0022090:intron
TGGATGTGTCTCTGATCCAA+CGG 0.628322 1_1:-40702791 Msa0022090:CDS
CGAGAATTCCGGCAACGGCG+AGG 0.633666 1_1:-40702582 Msa0022090:CDS
ATGAAGGGATACAGAAGCAG+TGG 0.638058 1_1:-40697914 Msa0022090:CDS
ACGCAGTTTCACCCGCTGTG+TGG 0.639303 1_1:-40698425 Msa0022090:CDS
AGAAGCTCGACGACCTGCGT+CGG 0.647459 1_1:+40703000 None:intergenic
CTACCGGAGACTGAAGAAGG+TGG 0.649449 1_1:-40702811 Msa0022090:CDS
TGGCCAGAAATCCCACACAA+TGG 0.662181 1_1:-40698405 Msa0022090:CDS
GCTGGTCCCAGGTTGCAACA+AGG 0.662336 1_1:-40701533 Msa0022090:intron
GGCGAAAACGGAGAATCTGG+CGG 0.667076 1_1:+40702876 None:intergenic
CAACCGACTCTGACAAACAG+AGG 0.673114 1_1:+40697794 None:intergenic
CGGTGGAAGTTCAAGAAGTG+CGG 0.677977 1_1:+40703020 None:intergenic
GTTGCCGGAATTCTCGTCGG+CGG 0.688782 1_1:+40702589 None:intergenic
TTAACTGTGTAAGTTGTTGG+GGG 0.694181 1_1:+40703186 None:intergenic
TGGGATTTCTGGCCACACAG+CGG 0.724797 1_1:+40698413 None:intergenic
GGCGGCGCGTTCAACCAACG+CGG 0.742023 1_1:+40702894 None:intergenic
GTTCACGTTCGAGTTCGACG+AGG 0.757130 1_1:-40702548 Msa0022090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_1:40698967-40698986 Msa0022090:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr1_1:40698966-40698985 Msa0022090:intron 0.0%
!! ATAAAAAGTTATGAATTTAA+TGG + chr1_1:40698913-40698932 None:intergenic 10.0%
!! TTAATGTAATAATATATCAT+CGG - chr1_1:40698943-40698962 Msa0022090:intron 10.0%
!!! ATAATTTTATTTTCAAGTAA+AGG - chr1_1:40700643-40700662 Msa0022090:intron 10.0%
!! AAGTTAGAAAATAATATAAA+TGG - chr1_1:40701568-40701587 Msa0022090:CDS 10.0%
!! TGTTTGTAATTGTAATAAAA+AGG + chr1_1:40697607-40697626 None:intergenic 15.0%
!! AAATAAAAAATTGAGTTTAG+TGG - chr1_1:40698772-40698791 Msa0022090:intron 15.0%
!! AATCCCTATATATATATATA+TGG - chr1_1:40699324-40699343 Msa0022090:intron 15.0%
!! CATCCATATATATATATATA+GGG + chr1_1:40699330-40699349 None:intergenic 15.0%
!! ACATCCATATATATATATAT+AGG + chr1_1:40699331-40699350 None:intergenic 15.0%
!!! AAAACATGTACTTTAATTTT+TGG + chr1_1:40699700-40699719 None:intergenic 15.0%
!! TATCAAAGAAATTATACATA+AGG - chr1_1:40699867-40699886 Msa0022090:intron 15.0%
!! ATCAAAGAAATTATACATAA+GGG - chr1_1:40699868-40699887 Msa0022090:intron 15.0%
!!! AGTAAATAAAAGTACTTTTT+GGG + chr1_1:40699943-40699962 None:intergenic 15.0%
!!! TAGTAAATAAAAGTACTTTT+TGG + chr1_1:40699944-40699963 None:intergenic 15.0%
!! AATTAAGGAAATAATTATTG+AGG + chr1_1:40700561-40700580 None:intergenic 15.0%
!!! ATTTTCATTATTTACATGAT+TGG + chr1_1:40700864-40700883 None:intergenic 15.0%
!! AATCATGTAAATAATGAAAA+TGG - chr1_1:40700863-40700882 Msa0022090:intron 15.0%
!! ATCATGTAAATAATGAAAAT+GGG - chr1_1:40700864-40700883 Msa0022090:intron 15.0%
!! TATAAATACAATCTAAAGAA+GGG + chr1_1:40701010-40701029 None:intergenic 15.0%
!! ATATAAATACAATCTAAAGA+AGG + chr1_1:40701011-40701030 None:intergenic 15.0%
!!! TTAAGAACTTTAAAAATTAG+TGG - chr1_1:40701281-40701300 Msa0022090:intron 15.0%
!!! ATATTATTTTCTAACTTTCA+AGG + chr1_1:40701565-40701584 None:intergenic 15.0%
!! CAAAATTGAAAATATTTCAT+AGG - chr1_1:40701617-40701636 Msa0022090:intron 15.0%
!!! TTTTCTCTTTTATTGAAAAA+AGG - chr1_1:40701807-40701826 Msa0022090:intron 15.0%
!! TAAAAATTAAAATGTCAAGA+AGG + chr1_1:40701928-40701947 None:intergenic 15.0%
!!! TCATCAAATTTGTTTTTAAT+TGG - chr1_1:40702058-40702077 Msa0022090:intron 15.0%
!! TAACTAAAAAGTAAAATAGA+TGG + chr1_1:40702370-40702389 None:intergenic 15.0%
!!! AAATAATATCTGAAATTCAT+TGG + chr1_1:40702510-40702529 None:intergenic 15.0%
!!! AAGTTTTAAAATTGATTGAA+AGG - chr1_1:40702961-40702980 Msa0022090:CDS 15.0%
!!! AGTTTTAAAATTGATTGAAA+GGG - chr1_1:40702962-40702981 Msa0022090:CDS 15.0%
!!! TTGCACTTAGAATTAATTTT+AGG - chr1_1:40698640-40698659 Msa0022090:intron 20.0%
!! TTTCAAAAGATTATATGATG+TGG - chr1_1:40698686-40698705 Msa0022090:intron 20.0%
!!! TTTTAATTAGAATACTCTGA+CGG + chr1_1:40698750-40698769 None:intergenic 20.0%
!! AAAAATATTAATTGATACGG+TGG - chr1_1:40698866-40698885 Msa0022090:intron 20.0%
!! AAAAGTTATGAATTTAATGG+TGG + chr1_1:40698910-40698929 None:intergenic 20.0%
!!! TTTTAATTTGATTGTGTTGT+AGG - chr1_1:40699427-40699446 Msa0022090:intron 20.0%
!! TGAAGATTAACATCTTAAAA+AGG + chr1_1:40699535-40699554 None:intergenic 20.0%
!!! TACTTTAATTTTTGGTGAAA+AGG + chr1_1:40699692-40699711 None:intergenic 20.0%
!! AAACTTTGTGGTTTATTTAA+TGG + chr1_1:40699828-40699847 None:intergenic 20.0%
!! CATATATCTAAAAAACTTTG+TGG + chr1_1:40699840-40699859 None:intergenic 20.0%
!!! CTTGATATCAATTTTTGTTA+AGG + chr1_1:40700036-40700055 None:intergenic 20.0%
!!! ATAGTAATTCTTTTTTGCTA+TGG - chr1_1:40700084-40700103 Msa0022090:intron 20.0%
!!! TAAAACAATGGATTGATTTA+TGG + chr1_1:40700110-40700129 None:intergenic 20.0%
!!! AATCCATTGTTTTATGAAAA+AGG - chr1_1:40700116-40700135 Msa0022090:intron 20.0%
!! ATTTATGGGATAATGAATAT+AGG - chr1_1:40700411-40700430 Msa0022090:intron 20.0%
!! TTTATGGGATAATGAATATA+GGG - chr1_1:40700412-40700431 Msa0022090:intron 20.0%
!! TGTGTATATAACTAAAGTTT+AGG + chr1_1:40700538-40700557 None:intergenic 20.0%
!! GTAGCATAAACTTTAAATTA+AGG + chr1_1:40700576-40700595 None:intergenic 20.0%
!!! TTTTTTTTTCCTTTCTTCTT+TGG - chr1_1:40700601-40700620 Msa0022090:intron 20.0%
!!! TCATTTAGATTGCAAAATTT+TGG + chr1_1:40700744-40700763 None:intergenic 20.0%
!! TCATGTAAATAATGAAAATG+GGG - chr1_1:40700865-40700884 Msa0022090:intron 20.0%
!! AAATTAAGAAACCTTAAACA+CGG - chr1_1:40700984-40701003 Msa0022090:intron 20.0%
!!! TTTTATATAACTGACATTCT+AGG - chr1_1:40701174-40701193 Msa0022090:intron 20.0%
!! GGAATTTATTTATTTGTCTT+TGG - chr1_1:40701828-40701847 Msa0022090:intron 20.0%
!! TTTATTTATTTGTCTTTGGT+TGG - chr1_1:40701832-40701851 Msa0022090:intron 20.0%
!! TTATTTATTTGTCTTTGGTT+GGG - chr1_1:40701833-40701852 Msa0022090:intron 20.0%
!! TAGTCTAATAAAACTAAATC+AGG + chr1_1:40701996-40702015 None:intergenic 20.0%
!! AATAGTTAAACTCAATTAGA+TGG + chr1_1:40702084-40702103 None:intergenic 20.0%
!!! TGTAAATACTTTTTTTCTTG+AGG - chr1_1:40702234-40702253 Msa0022090:intron 20.0%
!!! GTAAATACTTTTTTTCTTGA+GGG - chr1_1:40702235-40702254 Msa0022090:intron 20.0%
!! AGAATTTATAACTACTAGTT+AGG + chr1_1:40702337-40702356 None:intergenic 20.0%
!!! ATTTTACTTTTTAGTTACCA+AGG - chr1_1:40702373-40702392 Msa0022090:intron 20.0%
!! ATTAATATGTCCTTAAGATA+AGG - chr1_1:40703011-40703030 Msa0022090:CDS 20.0%
! TTTGGATATCTCATATAAAC+GGG + chr1_1:40697671-40697690 None:intergenic 25.0%
! GTTTGGATATCTCATATAAA+CGG + chr1_1:40697672-40697691 None:intergenic 25.0%
! ACGAACTCAATTGAAAAATT+AGG - chr1_1:40698326-40698345 Msa0022090:CDS 25.0%
! CGAACTCAATTGAAAAATTA+GGG - chr1_1:40698327-40698346 Msa0022090:CDS 25.0%
! TGAATTTCTCACTAATTTGA+GGG - chr1_1:40698355-40698374 Msa0022090:CDS 25.0%
! TAAAAAATTGAGTTTAGTGG+TGG - chr1_1:40698775-40698794 Msa0022090:intron 25.0%
! ACACCTTAATAAAAACTAGT+GGG + chr1_1:40699061-40699080 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG - chr1_1:40699104-40699123 Msa0022090:intron 25.0%
!! TTTTAGTAACATTCACCTTA+AGG + chr1_1:40699122-40699141 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - chr1_1:40699143-40699162 Msa0022090:intron 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG + chr1_1:40699143-40699162 None:intergenic 25.0%
! AAGTAGTTAAATACACCTTA+AGG - chr1_1:40699250-40699269 Msa0022090:intron 25.0%
! CATCTTAAAAAGGAATGAAA+AGG + chr1_1:40699525-40699544 None:intergenic 25.0%
! AGACAATTTAGACTAAATCA+TGG + chr1_1:40699607-40699626 None:intergenic 25.0%
!! AAAGACACAATAGTACTTTT+AGG + chr1_1:40699630-40699649 None:intergenic 25.0%
!!! TAAAAGTACTATTGTGTCTT+TGG - chr1_1:40699629-40699648 Msa0022090:intron 25.0%
! ATACATAAGGGAAATAGTAT+TGG - chr1_1:40699880-40699899 Msa0022090:intron 25.0%
! TAGAGGAATAAAATCTGTTT+AGG + chr1_1:40699980-40699999 None:intergenic 25.0%
! CATTTAGAGAAAAATGTTAG+AGG + chr1_1:40699997-40700016 None:intergenic 25.0%
!! CTAACATTTTTCTCTAAATG+TGG - chr1_1:40699997-40700016 Msa0022090:intron 25.0%
!!! TGTCCTTTTTCATAAAACAA+TGG + chr1_1:40700122-40700141 None:intergenic 25.0%
! TTTGTAGTACAGGATAATTA+AGG - chr1_1:40700162-40700181 Msa0022090:intron 25.0%
! ATTAGTATTTCACTTCCTTA+GGG + chr1_1:40700336-40700355 None:intergenic 25.0%
! TGAAATACTAATCCATCTTT+GGG - chr1_1:40700344-40700363 Msa0022090:intron 25.0%
! TGGTATCTATCAATCATTTA+TGG - chr1_1:40700396-40700415 Msa0022090:intron 25.0%
! GGTATCTATCAATCATTTAT+GGG - chr1_1:40700397-40700416 Msa0022090:intron 25.0%
!! AAGAAACCATAACTTTTAGA+AGG - chr1_1:40700441-40700460 Msa0022090:intron 25.0%
!! ATATTGCCTTCTAAAAGTTA+TGG + chr1_1:40700450-40700469 None:intergenic 25.0%
! ATCAAGCATGATTTATTAAC+AGG + chr1_1:40700709-40700728 None:intergenic 25.0%
! CATGTAAATAATGAAAATGG+GGG - chr1_1:40700866-40700885 Msa0022090:intron 25.0%
! ATGTAAATAATGAAAATGGG+GGG - chr1_1:40700867-40700886 Msa0022090:intron 25.0%
! AAATTTCCTTTACAGATATC+AGG - chr1_1:40701084-40701103 Msa0022090:intron 25.0%
! TTTGAAGGATCAGATAAATA+CGG + chr1_1:40701325-40701344 None:intergenic 25.0%
! TAATGTCACATAGAATAACA+GGG + chr1_1:40701425-40701444 None:intergenic 25.0%
! ATAATGTCACATAGAATAAC+AGG + chr1_1:40701426-40701445 None:intergenic 25.0%
!! TGCAAATTTTTCTACAAAAG+TGG - chr1_1:40701450-40701469 Msa0022090:intron 25.0%
! CAAGGTTGAAATCAATTATT+GGG + chr1_1:40701755-40701774 None:intergenic 25.0%
! TCAAGGTTGAAATCAATTAT+TGG + chr1_1:40701756-40701775 None:intergenic 25.0%
!!! TTTTTAGTTCGAATTTATCG+AGG - chr1_1:40701942-40701961 Msa0022090:intron 25.0%
! TGAAATGATGAACATGAAAA+TGG - chr1_1:40702126-40702145 Msa0022090:intron 25.0%
! GAAATGATGAACATGAAAAT+GGG - chr1_1:40702127-40702146 Msa0022090:intron 25.0%
! AAATGATGAACATGAAAATG+GGG - chr1_1:40702128-40702147 Msa0022090:intron 25.0%
!! AATGTAATAGAGTACTTAAC+AGG - chr1_1:40702262-40702281 Msa0022090:intron 25.0%
! TGTCTAATTTAATCACATCA+TGG - chr1_1:40702802-40702821 Msa0022090:CDS 25.0%
! TCAGTATGTATACTAACTAT+AGG - chr1_1:40703333-40703352 Msa0022090:five_prime_UTR 25.0%
! CAGTATGTATACTAACTATA+GGG - chr1_1:40703334-40703353 Msa0022090:five_prime_UTR 25.0%
! AGTATGTATACTAACTATAG+GGG - chr1_1:40703335-40703354 Msa0022090:five_prime_UTR 25.0%
! CAGATTGTAAAATCATTGAA+CGG - chr1_1:40703386-40703405 Msa0022090:five_prime_UTR 25.0%
TAAAAAGGATTCGAATTCGA+TGG + chr1_1:40697592-40697611 None:intergenic 30.0%
AGTTAACTGTGTAAGTTGTT+GGG + chr1_1:40697845-40697864 None:intergenic 30.0%
GTTTGAGAAAACTTGAAAAC+CGG + chr1_1:40697868-40697887 None:intergenic 30.0%
!!! GTTTTCAAGTTTTCTCAAAC+CGG - chr1_1:40697868-40697887 Msa0022090:three_prime_UTR 30.0%
CAATTCAACGAAGAAATTCA+AGG - chr1_1:40697945-40697964 Msa0022090:CDS 30.0%
AAACTCGACTAACTTAGTAA+AGG - chr1_1:40698187-40698206 Msa0022090:intron 30.0%
CTGAATTTCTCACTAATTTG+AGG - chr1_1:40698354-40698373 Msa0022090:CDS 30.0%
! ATGATGTGGCAGATTTTTAT+TGG - chr1_1:40698700-40698719 Msa0022090:intron 30.0%
!!! GCGTGTAAAGTTGTTTTAAA+CGG + chr1_1:40698809-40698828 None:intergenic 30.0%
GTTATGAATTTAATGGTGGT+GGG + chr1_1:40698906-40698925 None:intergenic 30.0%
AGTTATGAATTTAATGGTGG+TGG + chr1_1:40698907-40698926 None:intergenic 30.0%
! ATATATATATGGGGTTTGCT+AGG - chr1_1:40699030-40699049 Msa0022090:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG - chr1_1:40699055-40699074 Msa0022090:intron 30.0%
CACACCTTAATAAAAACTAG+TGG + chr1_1:40699062-40699081 None:intergenic 30.0%
! CACACCTTCTAAAAAATAAG+TGG - chr1_1:40699142-40699161 Msa0022090:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + chr1_1:40699202-40699221 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - chr1_1:40699202-40699221 Msa0022090:intron 30.0%
! CACACCTTCTAAAAAATAAG+TGG + chr1_1:40699142-40699161 None:intergenic 30.0%
! TTTTAGCAAACTACACCTTA+AGG + chr1_1:40699268-40699287 None:intergenic 30.0%
ACTATTGTGTCTTTGGATTA+TGG - chr1_1:40699636-40699655 Msa0022090:intron 30.0%
CTATTGTGTCTTTGGATTAT+GGG - chr1_1:40699637-40699656 Msa0022090:intron 30.0%
TATTGTGTCTTTGGATTATG+GGG - chr1_1:40699638-40699657 Msa0022090:intron 30.0%
!! CTGACTTGTAATTTTGTAAG+AGG + chr1_1:40699909-40699928 None:intergenic 30.0%
CTTACAAAATTACAAGTCAG+TGG - chr1_1:40699909-40699928 Msa0022090:CDS 30.0%
AGGAATAAAATCTGTTTAGG+AGG + chr1_1:40699977-40699996 None:intergenic 30.0%
! TGTGTTGATACATGTATTCA+TGG - chr1_1:40700307-40700326 Msa0022090:intron 30.0%
! GTGTTGATACATGTATTCAT+GGG - chr1_1:40700308-40700327 Msa0022090:intron 30.0%
TTAGTATTTCACTTCCTTAG+GGG + chr1_1:40700335-40700354 None:intergenic 30.0%
GATTAGTATTTCACTTCCTT+AGG + chr1_1:40700337-40700356 None:intergenic 30.0%
GTGAAATACTAATCCATCTT+TGG - chr1_1:40700343-40700362 Msa0022090:intron 30.0%
TACCAAACAATAAACCTAAC+TGG - chr1_1:40700471-40700490 Msa0022090:intron 30.0%
ACCAAACAATAAACCTAACT+GGG - chr1_1:40700472-40700491 Msa0022090:intron 30.0%
!!! TTTTTTCCTTTCTTCTTTGG+TGG - chr1_1:40700604-40700623 Msa0022090:intron 30.0%
GTTTGTCAATTGTCAATATC+AGG - chr1_1:40700836-40700855 Msa0022090:intron 30.0%
TGTAAATAATGAAAATGGGG+GGG - chr1_1:40700868-40700887 Msa0022090:intron 30.0%
!! TCAGATTATTTTACCCGTAT+TGG + chr1_1:40700899-40700918 None:intergenic 30.0%
TTGAAGGATCAGATAAATAC+GGG + chr1_1:40701324-40701343 None:intergenic 30.0%
!! AATGTTCTAAGCACTTTTGA+AGG + chr1_1:40701340-40701359 None:intergenic 30.0%
ATTTCATAGGATCTTTCTGT+TGG - chr1_1:40701630-40701649 Msa0022090:intron 30.0%
! GCAGATTTTATCAATGAAAC+TGG - chr1_1:40701719-40701738 Msa0022090:intron 30.0%
ATTCTTCTAAGTTTCCACAT+TGG - chr1_1:40702025-40702044 Msa0022090:intron 30.0%
ATGAATAACTCTAACCAATG+TGG + chr1_1:40702042-40702061 None:intergenic 30.0%
CTGGTATATGGAATAGAAAA+GGG - chr1_1:40702403-40702422 Msa0022090:intron 30.0%
! ATGCAATGTGTATGATTTTG+TGG - chr1_1:40702455-40702474 Msa0022090:intron 30.0%
! TATCTGAAATTCATTGGAGA+AGG + chr1_1:40702504-40702523 None:intergenic 30.0%
! AACTTAGAAGTGAGTTTTCT+GGG + chr1_1:40702737-40702756 None:intergenic 30.0%
! TAACTTAGAAGTGAGTTTTC+TGG + chr1_1:40702738-40702757 None:intergenic 30.0%
ACTTCTAAGTTATGACTCAT+CGG - chr1_1:40702746-40702765 Msa0022090:CDS 30.0%
AGCTTTCATAAGACAATGAT+TGG - chr1_1:40702846-40702865 Msa0022090:CDS 30.0%
TGAGGGATAAACAAATTGAA+AGG - chr1_1:40702878-40702897 Msa0022090:CDS 30.0%
TTACTTATTAGCATGTCTCT+CGG + chr1_1:40702915-40702934 None:intergenic 30.0%
GAGACATGCTAATAAGTAAT+TGG - chr1_1:40702916-40702935 Msa0022090:CDS 30.0%
!! CTACTTCTGAAGATTTTCAA+TGG - chr1_1:40703456-40703475 Msa0022090:five_prime_UTR 30.0%
!! TTGTAACGGAAGTGTTGAAT+AGG + chr1_1:40697631-40697650 None:intergenic 35.0%
GAATTTCCGTACTGTTGTAA+CGG + chr1_1:40697645-40697664 None:intergenic 35.0%
ATAATGTGCTTGTTCTGTGT+TGG + chr1_1:40697755-40697774 None:intergenic 35.0%
TTAACTGTGTAAGTTGTTGG+GGG + chr1_1:40697843-40697862 None:intergenic 35.0%
GTTAACTGTGTAAGTTGTTG+GGG + chr1_1:40697844-40697863 None:intergenic 35.0%
GAGTTAACTGTGTAAGTTGT+TGG + chr1_1:40697846-40697865 None:intergenic 35.0%
ACAACTTACACAGTTAACTC+CGG - chr1_1:40697846-40697865 Msa0022090:three_prime_UTR 35.0%
! TTTCTCAAACCGGTTCATTT+CGG - chr1_1:40697878-40697897 Msa0022090:three_prime_UTR 35.0%
CGAAGAAATTCAAGGAATCA+TGG - chr1_1:40697953-40697972 Msa0022090:intron 35.0%
GGAAGGGAAAGTTAAATTAC+CGG + chr1_1:40698108-40698127 None:intergenic 35.0%
TACTAAGTTAGTCGAGTTTG+TGG + chr1_1:40698186-40698205 None:intergenic 35.0%
AAAATTGAGTTTAGTGGTGG+TGG - chr1_1:40698778-40698797 Msa0022090:intron 35.0%
TGTATGTTAGCAACTCCTAT+AGG - chr1_1:40699166-40699185 Msa0022090:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr1_1:40699289-40699308 Msa0022090:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr1_1:40699295-40699314 None:intergenic 35.0%
ATTTGATTGTGTTGTAGGCT+AGG - chr1_1:40699432-40699451 Msa0022090:intron 35.0%
! GTGAAAAGGTGATAATGACA+TGG + chr1_1:40699678-40699697 None:intergenic 35.0%
AATCTGTTTAGGAGGATTGT+AGG + chr1_1:40699969-40699988 None:intergenic 35.0%
! TACGTCATAGTTTGTAGTAC+AGG - chr1_1:40700152-40700171 Msa0022090:intron 35.0%
TAAGTCAGAAAGCCAAAGAA+AGG + chr1_1:40700203-40700222 None:intergenic 35.0%
!! TCTTTGGCTTTCTGACTTAT+TGG - chr1_1:40700204-40700223 Msa0022090:intron 35.0%
TGAAAGGGAATTATTCTAGC+TGG - chr1_1:40700261-40700280 Msa0022090:intron 35.0%
! ATACTAATCCATCTTTGGGA+AGG - chr1_1:40700348-40700367 Msa0022090:intron 35.0%
GTTACCATCAACACTTTGTT+TGG - chr1_1:40700376-40700395 Msa0022090:intron 35.0%
!! GATACCAAACAAAGTGTTGA+TGG + chr1_1:40700383-40700402 None:intergenic 35.0%
ATGGGATAATGAATATAGGG+TGG - chr1_1:40700415-40700434 Msa0022090:intron 35.0%
TGGGATAATGAATATAGGGT+GGG - chr1_1:40700416-40700435 Msa0022090:intron 35.0%
ACCCAGTTAGGTTTATTGTT+TGG + chr1_1:40700476-40700495 None:intergenic 35.0%
!! TAAAGGCTTTTGAGTGTTTG+TGG - chr1_1:40700660-40700679 Msa0022090:intron 35.0%
!! AAAGGCTTTTGAGTGTTTGT+GGG - chr1_1:40700661-40700680 Msa0022090:intron 35.0%
GATTCAACAACAAATGATGC+TGG + chr1_1:40700771-40700790 None:intergenic 35.0%
GTGGTCGAACATACTTATAA+TGG + chr1_1:40700929-40700948 None:intergenic 35.0%
TGATAGTTTGAATCAAGTCG+TGG + chr1_1:40700948-40700967 None:intergenic 35.0%
AGTTCTTAAGCACTATCTAC+AGG + chr1_1:40701270-40701289 None:intergenic 35.0%
TGAAGGATCAGATAAATACG+GGG + chr1_1:40701323-40701342 None:intergenic 35.0%
AAATTAGGCAATGTGACGAT+CGG + chr1_1:40701484-40701503 None:intergenic 35.0%
TTCTAGACTTCTGCATTGTT+TGG - chr1_1:40701529-40701548 Msa0022090:intron 35.0%
! CTGAACTACATGTACTTTTC+TGG - chr1_1:40701863-40701882 Msa0022090:intron 35.0%
!! GCTTGGCTCTAAAATATTTG+AGG - chr1_1:40701885-40701904 Msa0022090:intron 35.0%
!!! ACTTTTTAGTTACCAAGGTC+TGG - chr1_1:40702378-40702397 Msa0022090:intron 35.0%
!!! CTTTTTAGTTACCAAGGTCT+GGG - chr1_1:40702379-40702398 Msa0022090:intron 35.0%
!!! TTTTTAGTTACCAAGGTCTG+GGG - chr1_1:40702380-40702399 Msa0022090:intron 35.0%
GCTGGTATATGGAATAGAAA+AGG - chr1_1:40702402-40702421 Msa0022090:intron 35.0%
!!! GTGTTTTGATGTGTTCAGTT+TGG - chr1_1:40702425-40702444 Msa0022090:intron 35.0%
!! TTTCTGGGGTCATGAAATTA+GGG + chr1_1:40702722-40702741 None:intergenic 35.0%
!!! TTTTCTGGGGTCATGAAATT+AGG + chr1_1:40702723-40702742 None:intergenic 35.0%
! ACTTAGAAGTGAGTTTTCTG+GGG + chr1_1:40702736-40702755 None:intergenic 35.0%
!! ATCATGGTTGCTATTTCCTT+TGG - chr1_1:40702818-40702837 Msa0022090:CDS 35.0%
ATAAGACAATGATTGGAGTG+TGG - chr1_1:40702853-40702872 Msa0022090:CDS 35.0%
TTCATCAGCTCCTTATCTTA+AGG + chr1_1:40703024-40703043 None:intergenic 35.0%
!! AAATTAGCCTTGATTTGAGC+AGG - chr1_1:40703183-40703202 Msa0022090:five_prime_UTR 35.0%
ACACTTCCGTTACAACAGTA+CGG - chr1_1:40697636-40697655 Msa0022090:three_prime_UTR 40.0%
!!! TGTTACGCTACGGTTTTGTT+TGG + chr1_1:40697694-40697713 None:intergenic 40.0%
AAAGCAACGTTGTTACGCTA+CGG + chr1_1:40697704-40697723 None:intergenic 40.0%
TGAACCAAACCGAAATGAAC+CGG + chr1_1:40697890-40697909 None:intergenic 40.0%
AATTCAAGGAATCATGGCTC+CGG - chr1_1:40697959-40697978 Msa0022090:intron 40.0%
CTTAGTAAAGGATGAGCTAC+CGG - chr1_1:40698199-40698218 Msa0022090:intron 40.0%
! CGAATTCCAAGAGTGCAAAA+AGG - chr1_1:40698267-40698286 Msa0022090:CDS 40.0%
! TTCCAAGAGTGCAAAAAGGA+AGG - chr1_1:40698271-40698290 Msa0022090:CDS 40.0%
! TTCCTTCCTTTTTGCACTCT+TGG + chr1_1:40698276-40698295 None:intergenic 40.0%
AAGGAAGGAACGAGAAAAGA+AGG - chr1_1:40698286-40698305 Msa0022090:CDS 40.0%
ATAGCCATAGCTTAGCAGAA+AGG - chr1_1:40698512-40698531 Msa0022090:intron 40.0%
TAGCCATAGCTTAGCAGAAA+GGG - chr1_1:40698513-40698532 Msa0022090:intron 40.0%
TTACCCTTTCTGCTAAGCTA+TGG + chr1_1:40698519-40698538 None:intergenic 40.0%
!! ATTTAATGGTGGTGGGTTGA+CGG + chr1_1:40698899-40698918 None:intergenic 40.0%
AACTCCTATAGGCATTTGCT+AGG - chr1_1:40699177-40699196 Msa0022090:intron 40.0%
GTATCCTAGCAAATGCCTAT+AGG + chr1_1:40699184-40699203 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - chr1_1:40699288-40699307 Msa0022090:CDS 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr1_1:40699296-40699315 None:intergenic 40.0%
AATGAAACTGTTGCAAGAGC+TGG - chr1_1:40699475-40699494 Msa0022090:intron 40.0%
AAAAATGCCCATGTTGCAGT+GGG + chr1_1:40699749-40699768 None:intergenic 40.0%
AGCCAAAGAAAGGAACAAGA+GGG + chr1_1:40700193-40700212 None:intergenic 40.0%
AAGCCAAAGAAAGGAACAAG+AGG + chr1_1:40700194-40700213 None:intergenic 40.0%
! GAATTATTCTAGCTGGACTC+TGG - chr1_1:40700268-40700287 Msa0022090:intron 40.0%
!! TGGACTCTGGCTTTAACAAT+TGG - chr1_1:40700281-40700300 Msa0022090:intron 40.0%
TGAAATGCTGAAACCCAGTT+AGG + chr1_1:40700488-40700507 None:intergenic 40.0%
! TTTCTTCTTTGGTGGTCTCA+GGG - chr1_1:40700612-40700631 Msa0022090:intron 40.0%
!! AAGGCTTTTGAGTGTTTGTG+GGG - chr1_1:40700662-40700681 Msa0022090:intron 40.0%
AACAGGTGAAGTTGTATGTG+TGG + chr1_1:40700692-40700711 None:intergenic 40.0%
GCTGTTCCTGATATCTGTAA+AGG + chr1_1:40701093-40701112 None:intergenic 40.0%
ACAGATATCAGGAACAGCAT+TGG - chr1_1:40701095-40701114 Msa0022090:intron 40.0%
!!! ATCAGGAACAGCATTGGTTT+TGG - chr1_1:40701101-40701120 Msa0022090:intron 40.0%
CATTCTGTAGAGATTGCACA+TGG + chr1_1:40701140-40701159 None:intergenic 40.0%
GCAATCTCTACAGAATGAAG+TGG - chr1_1:40701143-40701162 Msa0022090:intron 40.0%
ATCTCTACAGAATGAAGTGG+AGG - chr1_1:40701146-40701165 Msa0022090:intron 40.0%
CAGATAAATACGGGGAAGAA+AGG + chr1_1:40701315-40701334 None:intergenic 40.0%
GATCGTCACATTGCCTAATT+TGG - chr1_1:40701483-40701502 Msa0022090:intron 40.0%
CATTGCCTAATTTGGACTTC+AGG - chr1_1:40701491-40701510 Msa0022090:intron 40.0%
TCAAGCCTGAAGTCCAAATT+AGG + chr1_1:40701499-40701518 None:intergenic 40.0%
TTTCTGTTGGAACACATTGC+AGG - chr1_1:40701643-40701662 Msa0022090:intron 40.0%
!!! CTACATGTACTTTTCTGGCT+TGG - chr1_1:40701868-40701887 Msa0022090:intron 40.0%
TCATACGCACAACTGTAGAT+AGG + chr1_1:40701968-40701987 None:intergenic 40.0%
CTACAGAGTGGAATGAATGA+CGG + chr1_1:40702186-40702205 None:intergenic 40.0%
TTCATTGGAGAAGGCTGAAT+TGG + chr1_1:40702495-40702514 None:intergenic 40.0%
TTTCCATTGTGTGGGATTTC+TGG + chr1_1:40702627-40702646 None:intergenic 40.0%
TATGACTCATCGGCAAATTC+AGG - chr1_1:40702756-40702775 Msa0022090:CDS 40.0%
TTATGAAAGCTCGATGCCAA+AGG + chr1_1:40702837-40702856 None:intergenic 40.0%
GCACTCAAATCAGATGAAGA+TGG - chr1_1:40703085-40703104 Msa0022090:CDS 40.0%
AGATGAAGATGGAGCTATGA+AGG - chr1_1:40703096-40703115 Msa0022090:CDS 40.0%
GATGAAGATGGAGCTATGAA+GGG - chr1_1:40703097-40703116 Msa0022090:CDS 40.0%
! CTGTTGGCTGAATAAAATCC+AGG + chr1_1:40703263-40703282 None:intergenic 40.0%
! CTGGATTTTATTCAGCCAAC+AGG - chr1_1:40703261-40703280 Msa0022090:five_prime_UTR 40.0%
TATAGGGGTCATTCAGTCTT+AGG - chr1_1:40703350-40703369 Msa0022090:five_prime_UTR 40.0%
GGATTCGAATTCGATGGTTG+AGG + chr1_1:40697586-40697605 None:intergenic 45.0%
!!! CGCTACGGTTTTGTTTGGTT+TGG + chr1_1:40697689-40697708 None:intergenic 45.0%
!! GTTCTGTGTTGGTTCTTCTC+TGG + chr1_1:40697744-40697763 None:intergenic 45.0%
GAGGAGAGAAAGAAAGAGAG+TGG + chr1_1:40697803-40697822 None:intergenic 45.0%
AAGTTGTTGGGGGAGAATGA+AGG + chr1_1:40697833-40697852 None:intergenic 45.0%
! CAAACCGGTTCATTTCGGTT+TGG - chr1_1:40697883-40697902 Msa0022090:exon 45.0%
! GGTTTGGTTCAGTTGAACGA+TGG - chr1_1:40697899-40697918 Msa0022090:CDS 45.0%
!! GAATTGAATCGACTCGAACG+TGG + chr1_1:40697931-40697950 None:intergenic 45.0%
CAAGTCAGTGGATAGGGTTT+CGG + chr1_1:40698080-40698099 None:intergenic 45.0%
GTGTTGCAAGTCAGTGGATA+GGG + chr1_1:40698086-40698105 None:intergenic 45.0%
!! TATCCACTGACTTGCAACAC+CGG - chr1_1:40698086-40698105 Msa0022090:intron 45.0%
! CGAGTTTGTGGAATTTTCCC+CGG + chr1_1:40698174-40698193 None:intergenic 45.0%
TGGATGTGTCTCTGATCCAA+CGG - chr1_1:40698235-40698254 Msa0022090:intron 45.0%
! GAATTCGTGTTTTCGACCGT+TGG + chr1_1:40698254-40698273 None:intergenic 45.0%
TCTCATGTTCTGTGAAACGC+AGG - chr1_1:40698381-40698400 Msa0022090:CDS 45.0%
ACCAAACCTTGTTGCAACCT+GGG + chr1_1:40699502-40699521 None:intergenic 45.0%
!! CTGTAGAGCACTTTTCTTGG+TGG + chr1_1:40699724-40699743 None:intergenic 45.0%
!! GTGCTGTAGAGCACTTTTCT+TGG + chr1_1:40699727-40699746 None:intergenic 45.0%
CAAAAATGCCCATGTTGCAG+TGG + chr1_1:40699750-40699769 None:intergenic 45.0%
AACACAGTGTGTGTGATGTG+AGG + chr1_1:40699783-40699802 None:intergenic 45.0%
TCCCCTCTTGTTCCTTTCTT+TGG - chr1_1:40700188-40700207 Msa0022090:intron 45.0%
GCCAAAGAAAGGAACAAGAG+GGG + chr1_1:40700192-40700211 None:intergenic 45.0%
GACTTATTGGAGAGACAGAG+AGG - chr1_1:40700217-40700236 Msa0022090:intron 45.0%
TTATTGGAGAGACAGAGAGG+TGG - chr1_1:40700220-40700239 Msa0022090:intron 45.0%
TATTGGAGAGACAGAGAGGT+GGG - chr1_1:40700221-40700240 Msa0022090:intron 45.0%
ATGTATTCATGGGTCCCCTA+AGG - chr1_1:40700318-40700337 Msa0022090:intron 45.0%
! ATCCATCTTTGGGAAGGTGA+TGG - chr1_1:40700354-40700373 Msa0022090:intron 45.0%
AACCATCACCTTCCCAAAGA+TGG + chr1_1:40700359-40700378 None:intergenic 45.0%
CTGAGACCACCAAAGAAGAA+AGG + chr1_1:40700613-40700632 None:intergenic 45.0%
! CTTTCTTCTTTGGTGGTCTC+AGG - chr1_1:40700611-40700630 Msa0022090:intron 45.0%
CTAAAGAAGGGCCGTGTTTA+AGG + chr1_1:40700998-40701017 None:intergenic 45.0%
CTGCAGCTAATATGCTGTCA+AGG + chr1_1:40701773-40701792 None:intergenic 45.0%
CGTCATTCATTCCACTCTGT+AGG - chr1_1:40702184-40702203 Msa0022090:intron 45.0%
TATCATGACAGCCTACAGAG+TGG + chr1_1:40702198-40702217 None:intergenic 45.0%
! TGATGTGTTCAGTTTGGAGC+TGG - chr1_1:40702431-40702450 Msa0022090:intron 45.0%
GCTGTCTGTTTCCATTGTGT+GGG + chr1_1:40702635-40702654 None:intergenic 45.0%
TGCTGTCTGTTTCCATTGTG+TGG + chr1_1:40702636-40702655 None:intergenic 45.0%
GACAGCAATTTCAGCAATCG+TGG - chr1_1:40702649-40702668 Msa0022090:intron 45.0%
ATGCATTCCACCAACCACTT+TGG - chr1_1:40702679-40702698 Msa0022090:intron 45.0%
TGCATTCCACCAACCACTTT+GGG - chr1_1:40702680-40702699 Msa0022090:intron 45.0%
! TTTTCTTCTCTCCCCCAAAG+TGG + chr1_1:40702696-40702715 None:intergenic 45.0%
AATGATTGGAGTGTGGTGTG+AGG - chr1_1:40702860-40702879 Msa0022090:CDS 45.0%
ATGATTGGAGTGTGGTGTGA+GGG - chr1_1:40702861-40702880 Msa0022090:CDS 45.0%
ATGAAGGGATACAGAAGCAG+TGG - chr1_1:40703112-40703131 Msa0022090:exon 45.0%
TGTTGTGCCTGCTCAAATCA+AGG + chr1_1:40703193-40703212 None:intergenic 45.0%
TGTCCTCTGTTTGTCAGAGT+CGG - chr1_1:40703229-40703248 Msa0022090:five_prime_UTR 45.0%
!! ATTAAAAATATTAATTGATA+CGG - chr1_1:40698863-40698882 Msa0022090:intron 5.0%
!! TATATATATATATATATATG+GGG - chr1_1:40699021-40699040 Msa0022090:intron 5.0%
GGAGAATGAAGGAGGGAAAG+AGG + chr1_1:40697822-40697841 None:intergenic 50.0%
TGTTGGGGGAGAATGAAGGA+GGG + chr1_1:40697829-40697848 None:intergenic 50.0%
TTGTTGGGGGAGAATGAAGG+AGG + chr1_1:40697830-40697849 None:intergenic 50.0%
CGGTGGAAGTTCAAGAAGTG+CGG + chr1_1:40698009-40698028 None:intergenic 50.0%
CTTCACTCGTCGGAGATTAC+CGG - chr1_1:40698047-40698066 Msa0022090:intron 50.0%
! ATAGGGTTTCGGCGGTTTTC+CGG + chr1_1:40698069-40698088 None:intergenic 50.0%
! GGTGTTGCAAGTCAGTGGAT+AGG + chr1_1:40698087-40698106 None:intergenic 50.0%
!! TTACCGGTGTTGCAAGTCAG+TGG + chr1_1:40698092-40698111 None:intergenic 50.0%
! GGAATTTTCCCCGGCGAAAA+CGG + chr1_1:40698165-40698184 None:intergenic 50.0%
CATCCACCTTCTTCAGTCTC+CGG + chr1_1:40698221-40698240 None:intergenic 50.0%
CGAACTCGAACGTGAACGTA+CGG + chr1_1:40698475-40698494 None:intergenic 50.0%
TCCCAGGTTGCAACAAGGTT+TGG - chr1_1:40699498-40699517 Msa0022090:intron 50.0%
GACCAAACCTTGTTGCAACC+TGG + chr1_1:40699503-40699522 None:intergenic 50.0%
TACAGCACCCACTGCAACAT+GGG - chr1_1:40699739-40699758 Msa0022090:intron 50.0%
!! ATGGGGGGGTGTTACCAATA+CGG - chr1_1:40700882-40700901 Msa0022090:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+TGG - chr1_1:40702150-40702169 Msa0022090:intron 50.0%
TGGCCAGAAATCCCACACAA+TGG - chr1_1:40702621-40702640 Msa0022090:CDS 50.0%
GCATTCCACCAACCACTTTG+GGG - chr1_1:40702681-40702700 Msa0022090:intron 50.0%
CATTCCACCAACCACTTTGG+GGG - chr1_1:40702682-40702701 Msa0022090:intron 50.0%
! CAACCGACTCTGACAAACAG+AGG + chr1_1:40703235-40703254 None:intergenic 50.0%
CTCTGTTTGTCAGAGTCGGT+TGG - chr1_1:40703233-40703252 Msa0022090:five_prime_UTR 50.0%
TCAGAGTCGGTTGGAAAACC+TGG - chr1_1:40703242-40703261 Msa0022090:five_prime_UTR 50.0%
ATTCAGCCAACAGGCTAGCA+AGG - chr1_1:40703270-40703289 Msa0022090:five_prime_UTR 50.0%
! CTTCTTCCTTGCTAGCCTGT+TGG + chr1_1:40703279-40703298 None:intergenic 50.0%
TCTTGAACTTCCACCGACGC+AGG - chr1_1:40698013-40698032 Msa0022090:intron 55.0%
CGTCGAGCTTCTTCACTCGT+CGG - chr1_1:40698037-40698056 Msa0022090:intron 55.0%
GTCAGTGGATAGGGTTTCGG+CGG + chr1_1:40698077-40698096 None:intergenic 55.0%
GGCGAAAACGGAGAATCTGG+CGG + chr1_1:40698153-40698172 None:intergenic 55.0%
! GCCAGATTCTCCGTTTTCGC+CGG - chr1_1:40698152-40698171 Msa0022090:intron 55.0%
! CCAGATTCTCCGTTTTCGCC+GGG - chr1_1:40698153-40698172 Msa0022090:intron 55.0%
! CAGATTCTCCGTTTTCGCCG+GGG - chr1_1:40698154-40698173 Msa0022090:intron 55.0%
GAGCTACCGGAGACTGAAGA+AGG - chr1_1:40698212-40698231 Msa0022090:intron 55.0%
CTACCGGAGACTGAAGAAGG+TGG - chr1_1:40698215-40698234 Msa0022090:intron 55.0%
! GTTCACGTTCGAGTTCGACG+AGG - chr1_1:40698478-40698497 Msa0022090:intron 55.0%
CTACAGCACCCACTGCAACA+TGG - chr1_1:40699738-40699757 Msa0022090:intron 55.0%
AGAGACAGAGAGGTGGGTGT+GGG - chr1_1:40700227-40700246 Msa0022090:intron 55.0%
!! TGGGGGGGTGTTACCAATAC+GGG - chr1_1:40700883-40700902 Msa0022090:intron 55.0%
! TAGTTACCAAGGTCTGGGGC+TGG - chr1_1:40702384-40702403 Msa0022090:intron 55.0%
CATATACCAGCCCCAGACCT+TGG + chr1_1:40702393-40702412 None:intergenic 55.0%
! CAAGGTCTGGGGCTGGTATA+TGG - chr1_1:40702391-40702410 Msa0022090:intron 55.0%
CAGCGGGTGAAACTGCGTTA+GGG + chr1_1:40702599-40702618 None:intergenic 55.0%
ACAGCGGGTGAAACTGCGTT+AGG + chr1_1:40702600-40702619 None:intergenic 55.0%
!! TGGGATTTCTGGCCACACAG+CGG + chr1_1:40702616-40702635 None:intergenic 55.0%
CTTCTCTCCCCCAAAGTGGT+TGG + chr1_1:40702692-40702711 None:intergenic 55.0%
GAGCAGGCACAACATTCAGC+AGG - chr1_1:40703199-40703218 Msa0022090:five_prime_UTR 55.0%
AGGAATCATGGCTCCGGCGA+CGG - chr1_1:40697965-40697984 Msa0022090:intron 60.0%
! GAGTTCGCTGTTTCCGTCGC+CGG + chr1_1:40697981-40698000 None:intergenic 60.0%
AGAAGCTCGACGACCTGCGT+CGG + chr1_1:40698029-40698048 None:intergenic 60.0%
TTTCCCTTCCAACGCCGCGT+TGG - chr1_1:40698118-40698137 Msa0022090:intron 60.0%
! CAACCAACGCGGCGTTGGAA+GGG + chr1_1:40698124-40698143 None:intergenic 60.0%
! TCAACCAACGCGGCGTTGGA+AGG + chr1_1:40698125-40698144 None:intergenic 60.0%
CCCGGCGAAAACGGAGAATC+TGG + chr1_1:40698156-40698175 None:intergenic 60.0%
ATCGCCGCCGACGAGAATTC+CGG - chr1_1:40698433-40698452 Msa0022090:CDS 60.0%
GTTGCCGGAATTCTCGTCGG+CGG + chr1_1:40698440-40698459 None:intergenic 60.0%
GCCGACGAGAATTCCGGCAA+CGG - chr1_1:40698439-40698458 Msa0022090:CDS 60.0%
GCCGTTGCCGGAATTCTCGT+CGG + chr1_1:40698443-40698462 None:intergenic 60.0%
CTGTTGCAAGAGCTGGTCCC+AGG - chr1_1:40699482-40699501 Msa0022090:intron 60.0%
GCTGGTCCCAGGTTGCAACA+AGG - chr1_1:40699493-40699512 Msa0022090:intron 60.0%
GAGAGACAGAGAGGTGGGTG+TGG - chr1_1:40700226-40700245 Msa0022090:intron 60.0%
TGGGCGTGTGGGGTGTGAAA+GGG - chr1_1:40700246-40700265 Msa0022090:intron 60.0%
ACGCAGTTTCACCCGCTGTG+TGG - chr1_1:40702601-40702620 Msa0022090:CDS 60.0%
!! GGGATTTCTGGCCACACAGC+GGG + chr1_1:40702615-40702634 None:intergenic 60.0%
CTCTCCCCCAAAGTGGTTGG+TGG + chr1_1:40702689-40702708 None:intergenic 60.0%
GCGTTCAACCAACGCGGCGT+TGG + chr1_1:40698129-40698148 None:intergenic 65.0%
CGAGAATTCCGGCAACGGCG+AGG - chr1_1:40698444-40698463 Msa0022090:CDS 65.0%
AGAGGTGGGTGTGGGCGTGT+GGG - chr1_1:40700235-40700254 Msa0022090:intron 65.0%
GTGGGCGTGTGGGGTGTGAA+AGG - chr1_1:40700245-40700264 Msa0022090:intron 65.0%
AGCTCGACGACCTGCGTCGG+TGG + chr1_1:40698026-40698045 None:intergenic 70.0%
GGCGGCGCGTTCAACCAACG+CGG + chr1_1:40698135-40698154 None:intergenic 70.0%
CGGAAGCTCCTCGCCGTTGC+CGG + chr1_1:40698455-40698474 None:intergenic 70.0%
GAGAGGTGGGTGTGGGCGTG+TGG - chr1_1:40700234-40700253 Msa0022090:intron 70.0%
GAGGTGGGTGTGGGCGTGTG+GGG - chr1_1:40700236-40700255 Msa0022090:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 40697552 40703496 40697552 ID=Msa0022090;Name=Msa0022090
chr1_1 mRNA 40697552 40703496 40697552 ID=Msa0022090-mRNA-1;Parent=Msa0022090;Name=Msa0022090-mRNA-1;_AED=0.17;_eAED=0.17;_QI=366|0.83|0.85|1|1|1|7|346|339
chr1_1 exon 40697552 40697970 40697552 ID=Msa0022090-mRNA-1:exon:12201;Parent=Msa0022090-mRNA-1
chr1_1 exon 40698261 40698478 40698261 ID=Msa0022090-mRNA-1:exon:12200;Parent=Msa0022090-mRNA-1
chr1_1 exon 40699254 40699325 40699254 ID=Msa0022090-mRNA-1:exon:12199;Parent=Msa0022090-mRNA-1
chr1_1 exon 40699881 40699949 40699881 ID=Msa0022090-mRNA-1:exon:12198;Parent=Msa0022090-mRNA-1
chr1_1 exon 40701534 40701599 40701534 ID=Msa0022090-mRNA-1:exon:12197;Parent=Msa0022090-mRNA-1
chr1_1 exon 40702514 40702645 40702514 ID=Msa0022090-mRNA-1:exon:12196;Parent=Msa0022090-mRNA-1
chr1_1 exon 40702741 40703496 40702741 ID=Msa0022090-mRNA-1:exon:12195;Parent=Msa0022090-mRNA-1
chr1_1 five_prime_UTR 40703131 40703496 40703131 ID=Msa0022090-mRNA-1:five_prime_utr;Parent=Msa0022090-mRNA-1
chr1_1 CDS 40702741 40703130 40702741 ID=Msa0022090-mRNA-1:cds;Parent=Msa0022090-mRNA-1
chr1_1 CDS 40702514 40702645 40702514 ID=Msa0022090-mRNA-1:cds;Parent=Msa0022090-mRNA-1
chr1_1 CDS 40701534 40701599 40701534 ID=Msa0022090-mRNA-1:cds;Parent=Msa0022090-mRNA-1
chr1_1 CDS 40699881 40699949 40699881 ID=Msa0022090-mRNA-1:cds;Parent=Msa0022090-mRNA-1
chr1_1 CDS 40699254 40699325 40699254 ID=Msa0022090-mRNA-1:cds;Parent=Msa0022090-mRNA-1
chr1_1 CDS 40698261 40698478 40698261 ID=Msa0022090-mRNA-1:cds;Parent=Msa0022090-mRNA-1
chr1_1 CDS 40697898 40697970 40697898 ID=Msa0022090-mRNA-1:cds;Parent=Msa0022090-mRNA-1
chr1_1 three_prime_UTR 40697552 40697897 40697552 ID=Msa0022090-mRNA-1:three_prime_utr;Parent=Msa0022090-mRNA-1
Gene Sequence

>Msa0022090

ATGGAACAAACCACGTTCGAGTCGATTCAATTCAACGAAGAAATTCAAGGAATCATGGCTCCGGCGACGGAAACAGCGAACTCTTTCACCGCACTTCTTGAACTTCCACCGACGCAGGTCGTCGAGCTTCTTCACTCGTCGGAGATTACCGGAAAACCGCCGAAACCCTATCCACTGACTTGCAACACCGGTAATTTAACTTTCCCTTCCAACGCCGCGTTGGTTGAACGCGCCGCCAGATTCTCCGTTTTCGCCGGGGAAAATTCCACAAACTCGACTAACTTAGTAAAGGATGAGCTACCGGAGACTGAAGAAGGTGGATGTGTCTCTGATCCAACGGTCGAAAACACGAATTCCAAGAGTGCAAAAAGGAAGGAACGAGAAAAGAAGGTGAAATTGTCGTCTAAGAAGAGTAAGAGTATCGCCGCCGACGAGAATTCCGGCAACGGCGAGGAGCTTCCGTACGTTCACGTTCGAGTTCGACGAGGTCAAGCTACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTGCAAGAGCTGGTCCCAGGTTGCAACAAGATATCAGGAACAGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGAATGAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAATAATTGATTTCAACCTTGACAGCATATTAGCTGCAGAAGGAATGTCTCTCATAGACAGTAACTTCCCTAACGCAGTTTCACCCGCTGTGTGGCCAGAAATCCCACACAATGGAAACAGACAGCAATTTCAGCAATCGTGGCAATCTGATGCATTCCACCAACCACTTTGGGGGAGAGAAGAAAACAACCCTAATTTCATGACCCCAGAAAACTCACTTCTAAGTTATGACTCATCGGCAAATTCAGGTAGATTAGATATCTCTGCACTCAAATCAGATGAAGATGGAGCTATGAAGGGATACAGAAGCAGTGGTAATAGTAGCAATTAG
Protein sequence

>Msa0022090

MEQTTFESIQFNEEIQGIMAPATETANSFTALLELPPTQVVELLHSSEITGKPPKPYPLTCNTGNLTFPSNAALVERAARFSVFAGENSTNSTNLVKDELPETEEGGCVSDPTVENTNSKSAKRKEREKKVKLSSKKSKSIAADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQNEVEILSMKLAAVNPIIDFNLDSILAAEGMSLIDSNFPNAVSPAVWPEIPHNGNRQQFQQSWQSDAFHQPLWGREENNPNFMTPENSLLSYDSSANSGRLDISALKSDEDGAMKGYRSSGNSSN*