AlfalfaGEDB | Msa0079320

M. sativa cultivar zhongmu-4 / Msa0079320

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079320	sp\|Q8GUN5\|PHL1_ARATH	56.972	251	99	5	61	306	119	365	2.16e-82	260

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079320	G7I6T3	97.938	388	8	0	1	388	1	388	0.0	776

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TFs/TRs:

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Gene ID	Type	Classification
Msa0079320	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0079320	0.854002	1.644190e-61	-8.615850e-47
Msa0001040	Msa0079320	0.846524	2.057939e-59	-8.615850e-47
Msa0001510	Msa0079320	0.826142	3.190575e-54	-8.615850e-47
Msa0002110	Msa0079320	0.827415	1.584129e-54	-8.615850e-47
Msa0002690	Msa0079320	0.849994	2.262063e-60	-8.615850e-47
Msa0002700	Msa0079320	0.852361	4.854101e-61	-8.615850e-47
Msa0003340	Msa0079320	0.816173	6.337173e-52	-8.615850e-47
Msa0004180	Msa0079320	0.811363	7.268867e-51	-8.615850e-47
Msa0005500	Msa0079320	0.829072	6.317232e-55	-8.615850e-47
Msa0007570	Msa0079320	0.857102	2.051351e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079320	MtrunA17_Chr1g0190301	97.938	388	8	0	1	388	1	388	0.0	776
Msa0079320	MtrunA17_Chr7g0274471	54.415	419	134	11	8	385	37	439	8.52e-129	377
Msa0079320	MtrunA17_Chr7g0261911	44.656	421	177	11	21	388	72	489	7.48e-95	292
Msa0079320	MtrunA17_Chr7g0258551	58.955	134	54	1	174	307	211	343	3.57e-51	176
Msa0079320	MtrunA17_Chr1g0175091	55.488	164	59	5	166	329	253	402	3.94e-50	174
Msa0079320	MtrunA17_Chr2g0291021	55.921	152	63	2	175	322	49	200	5.29e-47	163
Msa0079320	MtrunA17_Chr7g0254981	52.903	155	70	2	174	325	49	203	1.14e-44	155
Msa0079320	MtrunA17_Chr6g0461641	45.026	191	64	5	171	327	38	221	1.36e-40	148
Msa0079320	MtrunA17_Chr2g0321461	43.558	163	72	2	161	303	31	193	1.32e-36	137
Msa0079320	MtrunA17_Chr5g0409731	42.857	182	81	5	168	326	18	199	1.92e-34	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079320	AT5G29000.1	56.972	251	99	5	61	306	76	322	8.49e-84	260
Msa0079320	AT5G29000.3	56.972	251	99	5	61	306	76	322	8.49e-84	260
Msa0079320	AT5G29000.2	56.972	251	99	5	61	306	119	365	2.20e-83	260
Msa0079320	AT4G28610.1	49.020	306	131	9	17	304	57	355	3.34e-77	244
Msa0079320	AT3G04450.4	50.365	274	120	7	43	309	71	335	2.23e-76	242
Msa0079320	AT3G04450.2	50.365	274	120	7	43	309	71	335	2.23e-76	242
Msa0079320	AT3G04450.1	50.545	275	118	7	43	309	111	375	4.84e-76	242
Msa0079320	AT2G20400.1	49.333	225	95	4	93	304	142	360	1.73e-56	190
Msa0079320	AT2G20400.2	49.115	226	95	5	93	304	142	361	1.04e-54	186
Msa0079320	AT2G01060.1	58.125	160	58	3	161	315	5	160	2.21e-51	174

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Find 147 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATACGAGATAGGAA+GGG	0.678315	1_2:+57127818	None:intergenic
AAACAACGGATTTCAAGGAG+TGG	0.628215	1_2:-57130563	Msa0079320:CDS
AAATACTAGATGCCTTCACA+GGG	0.647921	1_2:+57128184	None:intergenic
AACAACGGATTTCAAGGAGT+GGG	0.590584	1_2:-57130562	Msa0079320:CDS
AAGAAAGTGACGTTATGTCC+TGG	0.515386	1_2:-57130689	Msa0079320:CDS
AAGAATTTCCAACCCTGTGA+AGG	0.554623	1_2:-57128196	Msa0079320:three_prime_UTR
AAGGGAGATCAAAGGGAAAA+AGG	0.353136	1_2:+57127836	None:intergenic
AATACAAGCACAGAGCAAAA+GGG	0.565422	1_2:-57128317	Msa0079320:CDS
AATAGACGAAGACATAGCTC+TGG	0.590376	1_2:+57130848	None:intergenic
AATCTAAGCCTAGAATGCGT+TGG	0.584166	1_2:-57129884	Msa0079320:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCATAATGAAGAATGAATTG+GGG	+	chr1_2:57127805-57127824	None:intergenic	30.0%
TTTCACAAGTTCAGTGAATT+CGG	+	chr1_2:57128024-57128043	None:intergenic	30.0%
TGACATATATTCAACGATTG+TGG	+	chr1_2:57128478-57128497	None:intergenic	30.0%
CAAAACAATGTTGATCAATG+AGG	-	chr1_2:57128496-57128515	Msa0079320:CDS	30.0%
TTTGATTACAACAGTCTAGA+AGG	-	chr1_2:57128535-57128554	Msa0079320:intron	30.0%
AGAAGGTTATAGACGATTAA+AGG	-	chr1_2:57128552-57128571	Msa0079320:intron	30.0%
AGACGATTAAAGGTCAAATA+CGG	-	chr1_2:57128562-57128581	Msa0079320:intron	30.0%
TTCATATTACCGATGAAGTA+CGG	+	chr1_2:57128757-57128776	None:intergenic	30.0%
TAATATGAACAAGTGACCTT+TGG	-	chr1_2:57128768-57128787	Msa0079320:intron	30.0%
TCAAATAAGACAAACCAAAC+AGG	+	chr1_2:57128866-57128885	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	57127737	57132237	57127737	ID=Msa0079320;Name=Msa0079320
chr1_2	mRNA	57127737	57132237	57127737	ID=Msa0079320-mRNA-1;Parent=Msa0079320;Name=Msa0079320-mRNA-1;_AED=0.20;_eAED=0.20;_QI=271\|1\|1\|1\|0.75\|0.66\|9\|492\|388
chr1_2	exon	57127737	57128552	57127737	ID=Msa0079320-mRNA-1:exon:18035;Parent=Msa0079320-mRNA-1
chr1_2	exon	57128689	57128758	57128689	ID=Msa0079320-mRNA-1:exon:18034;Parent=Msa0079320-mRNA-1
chr1_2	exon	57129049	57129106	57129049	ID=Msa0079320-mRNA-1:exon:18033;Parent=Msa0079320-mRNA-1
chr1_2	exon	57129536	57129575	57129536	ID=Msa0079320-mRNA-1:exon:18032;Parent=Msa0079320-mRNA-1
chr1_2	exon	57129666	57129742	57129666	ID=Msa0079320-mRNA-1:exon:18031;Parent=Msa0079320-mRNA-1
chr1_2	exon	57129826	57130030	57129826	ID=Msa0079320-mRNA-1:exon:18030;Parent=Msa0079320-mRNA-1
chr1_2	exon	57130470	57130908	57130470	ID=Msa0079320-mRNA-1:exon:18029;Parent=Msa0079320-mRNA-1
chr1_2	exon	57131687	57131760	57131687	ID=Msa0079320-mRNA-1:exon:18028;Parent=Msa0079320-mRNA-1
chr1_2	exon	57132087	57132237	57132087	ID=Msa0079320-mRNA-1:exon:18027;Parent=Msa0079320-mRNA-1
chr1_2	five_prime_UTR	57132087	57132237	57132087	ID=Msa0079320-mRNA-1:five_prime_utr;Parent=Msa0079320-mRNA-1
chr1_2	five_prime_UTR	57131687	57131760	57131687	ID=Msa0079320-mRNA-1:five_prime_utr;Parent=Msa0079320-mRNA-1
chr1_2	five_prime_UTR	57130863	57130908	57130863	ID=Msa0079320-mRNA-1:five_prime_utr;Parent=Msa0079320-mRNA-1
chr1_2	CDS	57130470	57130862	57130470	ID=Msa0079320-mRNA-1:cds;Parent=Msa0079320-mRNA-1
chr1_2	CDS	57129826	57130030	57129826	ID=Msa0079320-mRNA-1:cds;Parent=Msa0079320-mRNA-1
chr1_2	CDS	57129666	57129742	57129666	ID=Msa0079320-mRNA-1:cds;Parent=Msa0079320-mRNA-1
chr1_2	CDS	57129536	57129575	57129536	ID=Msa0079320-mRNA-1:cds;Parent=Msa0079320-mRNA-1
chr1_2	CDS	57129049	57129106	57129049	ID=Msa0079320-mRNA-1:cds;Parent=Msa0079320-mRNA-1
chr1_2	CDS	57128689	57128758	57128689	ID=Msa0079320-mRNA-1:cds;Parent=Msa0079320-mRNA-1
chr1_2	CDS	57128229	57128552	57128229	ID=Msa0079320-mRNA-1:cds;Parent=Msa0079320-mRNA-1
chr1_2	three_prime_UTR	57127737	57128228	57127737	ID=Msa0079320-mRNA-1:three_prime_utr;Parent=Msa0079320-mRNA-1

Gene Sequence

>Msa0079320

ATGTCTTCGTCTATTCCCTCTTCCTCGATGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCCCTTCTGAACAGCCTGATAACGTCCATTTTTCCTCTGCTTCAGAAATACATTCTATGACATTCCCTCAAGAAAGTGACGTTATGTCCTGGGGAACTGATCCATTTGAAGATATTCTTCAATTTCCTGATAATGTTCCCACCCAGAATGACCATGTGGAATACAATGGTTCTGAAGTCTTGGGTGGAAATGCCAAAACAACGGATTTCAAGGAGTGGGTTGATCAGTTGATGTCAGTCGATGATGATTCTATTCAGCCAAATTGGAATGAACTTCTCGGTGATAACAATATGACAGAACCAAAATCACAGGATGCACAAATGTCCCCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACAGCAGCAGTATATACTATCACTACCATCCAAAGAAGTTAATGATCTTCCTAATTCTTCTGTGTCGACTACATCGCAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCTAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGGTACAAACCAGAATCATCAGAAGGAATTCCAGAGAAGAAGTTGACTTCAATCGACGAAATGCCGTCTATAGACTTAAAAACGCCTAAGGGGATTACAGAAGCATTGCGGCTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAGATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGATGAAGTCGGATGAGCCTTCTGCTCCACTATCAAGTGTGGCACTATCTTCTCCAGTTGAAAATTTAGAAAACACAAATGAAGGTCACGAAAAAATTGGAATCAATGGCAGCACTTCAGACAACATGCCAGAAGGAAGTTCCCAGAATACAAGCACAGAGCAAAAGGGAGATGATGCTAAAGCTACCGGTGAACTTGAGCTGGGAGAAGACCAACTTACCGCACCACCCACAAAACGAGTGAAGACTGACAAGTAG

Protein sequence

>Msa0079320

MSSSIPSSSMQAASINSNIRSVGHMFSTPSEQPDNVHFSSASEIHSMTFPQESDVMSWGTDPFEDILQFPDNVPTQNDHVEYNGSEVLGGNAKTTDFKEWVDQLMSVDDDSIQPNWNELLGDNNMTEPKSQDAQMSPSLLMQETQVSQQQYILSLPSKEVNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGIPEKKLTSIDEMPSIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQMKSDEPSAPLSSVALSSPVENLENTNEGHEKIGINGSTSDNMPEGSSQNTSTEQKGDDAKATGELELGEDQLTAPPTKRVKTDK*