AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029570 MtrunA17_Chr7g0249951 99.324 444 3 0 1 444 1 444 0.0 902
Msa1029570 MtrunA17_Chr4g0045891 66.265 415 132 5 24 437 43 450 0.0 566
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029570 AT5G48370.1 79.572 421 83 2 21 439 7 426 0.0 680
Msa1029570 AT5G48370.2 79.714 419 83 2 21 438 7 424 0.0 679
Msa1029570 AT2G30720.1 65.000 420 140 4 18 436 36 449 0.0 560
Msa1029570 AT5G48370.3 80.323 310 60 1 130 438 5 314 7.25e-180 505

Find 127 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAGTTGGTTCTGTTATA+TGG 0.116993 7_1:+63019417 Msa1029570:CDS
TATATTTCTACTAGCATTAT+AGG 0.181025 7_1:+63021082 Msa1029570:three_prime_UTR
AACATCCATGGTCGAATATT+TGG 0.228159 7_1:+63020220 Msa1029570:CDS
AGATCAATGTTAACAGTAAT+TGG 0.229697 7_1:-63019392 None:intergenic
GCCATAAAGCGATGGGTTTC+CGG 0.233289 7_1:-63018163 None:intergenic
ACCGGAAACCCATCGCTTTA+TGG 0.233299 7_1:+63018162 Msa1029570:CDS
CTCCGGTGACAACAGCTCTT+TGG 0.242464 7_1:+63018201 Msa1029570:CDS
TTAGGCAACATAAGTGATTT+TGG 0.244802 7_1:+63021128 Msa1029570:three_prime_UTR
CGGGAGCCGGTGACCGGAAT+AGG 0.262219 7_1:-63018137 None:intergenic
TCAACAGCTTATGCCTTTGC+TGG 0.276122 7_1:+63020280 Msa1029570:CDS
CCTAAGAAATGTACCTTGTT+TGG 0.294856 7_1:-63019483 None:intergenic
TTGTTCTTAGGGAGCAATAT+AGG 0.299391 7_1:+63018351 Msa1029570:CDS
TTGCTGTGGATGGCATATTA+AGG 0.300060 7_1:-63020194 None:intergenic
TCCGGTGACAACAGCTCTTT+GGG 0.317801 7_1:+63018202 Msa1029570:CDS
CTAATTAAAATGTGTACCTT+TGG 0.336995 7_1:+63020974 Msa1029570:three_prime_UTR
GCTTGAAGATCTTGATGCTT+TGG 0.338962 7_1:+63018406 Msa1029570:CDS
CGTGCTTCTTCTTCTGTTGC+CGG 0.340030 7_1:-63020868 None:intergenic
GGCTGGAACCATTTCTGTTA+AGG 0.348082 7_1:+63018427 Msa1029570:CDS
AAACTTGTGCCCTCAATAAC+TGG 0.348495 7_1:-63021055 None:intergenic
CATCTATACGCTCTAATATA+CGG 0.352756 7_1:-63020891 None:intergenic
ACCGAGACAGCATTCTTCTA+AGG 0.353771 7_1:+63020152 Msa1029570:CDS
TGTTCTTAGGGAGCAATATA+GGG 0.360689 7_1:+63018352 Msa1029570:CDS
CTTTGTGGAGGAGCATCTCT+TGG 0.362465 7_1:-63018263 None:intergenic
GGGATCCTTGGAATGATGTT+AGG 0.369029 7_1:+63018372 Msa1029570:CDS
AATAGTTGGTTCTGTTATAT+GGG 0.372934 7_1:+63019418 Msa1029570:CDS
AACATTGATCTCACAATAGT+TGG 0.381992 7_1:+63019404 Msa1029570:CDS
ATCATAAGGATCACAAAGTA+TGG 0.393137 7_1:-63021316 None:intergenic
TTGGTTCTGTTATATGGGTT+GGG 0.395985 7_1:+63019423 Msa1029570:CDS
ACATTGATAAGTGGCTGATC+TGG 0.398752 7_1:-63020584 None:intergenic
ACATGGCACCTTAACAGAAA+TGG 0.399236 7_1:-63018435 None:intergenic
AAATTCTACCCTCGGCCAAT+AGG 0.403163 7_1:-63020105 None:intergenic
GGGTTTCCGGTCGCGGGAGC+CGG 0.405885 7_1:-63018150 None:intergenic
GTTGGTTCTGTTATATGGGT+TGG 0.413692 7_1:+63019422 Msa1029570:CDS
GAAGATCTTGATGCTTTGGC+TGG 0.414526 7_1:+63018410 Msa1029570:CDS
TGCTCCTCCACAAAGTGAAT+TGG 0.422333 7_1:+63018271 Msa1029570:CDS
GATGAATCGTGCGTTTGAAT+TGG 0.436637 7_1:+63020252 Msa1029570:CDS
CGGTCGCGGGAGCCGGTGAC+CGG 0.439783 7_1:-63018143 None:intergenic
GACGTACAGTGAAAGTGAAA+TGG 0.440668 7_1:-63020798 None:intergenic
TATGATTCAATTTCTAATGC+AGG 0.441295 7_1:-63021266 None:intergenic
CCTTGGAATGATGTTAGGAT+TGG 0.450991 7_1:+63018377 Msa1029570:CDS
CACATTCGAAAACCCTATTC+CGG 0.452536 7_1:+63018124 Msa1029570:CDS
GGGAGCCGGTGACCGGAATA+GGG 0.452753 7_1:-63018136 None:intergenic
AATTGTGATGGTGCTGTTGT+TGG 0.461367 7_1:-63018072 None:intergenic
CTCGAGTTGAATTTCTATTG+AGG 0.466332 7_1:-63019450 None:intergenic
AAGCGATGGGTTTCCGGTCG+CGG 0.467733 7_1:-63018157 None:intergenic
ATAATGCTAGTAGAAATATA+TGG 0.468153 7_1:-63021079 None:intergenic
AAACCCATCGCTTTATGGCC+GGG 0.471066 7_1:+63018167 Msa1029570:CDS
ATTCTGATGTCCAGTTATTG+AGG 0.471164 7_1:+63021045 Msa1029570:three_prime_UTR
TGATCAACTTCTAGAAAGTA+AGG 0.472016 7_1:-63020310 None:intergenic
TGTGGAGGAGCATCTCTTGG+TGG 0.474211 7_1:-63018260 None:intergenic
GGATGTTCCTTTGCTGTGGA+TGG 0.474308 7_1:-63020204 None:intergenic
GAGCTGTTGTCACCGGAGAA+TGG 0.477891 7_1:-63018196 None:intergenic
GGGAGCAATATAGGGATCCT+TGG 0.479064 7_1:+63018360 Msa1029570:CDS
GCCGGGGATGTTCCATTCTC+CGG 0.480371 7_1:+63018184 Msa1029570:CDS
AATCATAAATCAATGGTATG+AGG 0.481399 7_1:+63021282 Msa1029570:three_prime_UTR
CGGTCACCGGCTCCCGCGAC+CGG 0.482291 7_1:+63018144 Msa1029570:CDS
GAAACCCATCGCTTTATGGC+CGG 0.483862 7_1:+63018166 Msa1029570:CDS
CTAGTAACCAATTCACTTTG+TGG 0.484531 7_1:-63018278 None:intergenic
CTGTCTCGGTCGGCTAAGGC+TGG 0.490377 7_1:-63020139 None:intergenic
TTCTGATGTCCAGTTATTGA+GGG 0.493277 7_1:+63021046 Msa1029570:three_prime_UTR
CCTTATGATGCTCATACTCA+TGG 0.497963 7_1:+63021330 Msa1029570:three_prime_UTR
CCCTTAGAAGAATGCTGTCT+CGG 0.503877 7_1:-63020153 None:intergenic
GAAGCAGTAACAAGTATAAG+TGG 0.504808 7_1:-63019344 None:intergenic
ACAGGGATTGTTCCATTCAC+AGG 0.507244 7_1:-63018095 None:intergenic
ATCCATGGTCGAATATTTGG+AGG 0.508984 7_1:+63020223 Msa1029570:CDS
CTGATCTGGATCGTGAAGTT+CGG 0.509073 7_1:-63020570 None:intergenic
GAAGAGAAACAGCAATTAGC+TGG 0.509375 7_1:+63020947 Msa1029570:three_prime_UTR
CACTGTACGTCCAGAGGCAA+AGG 0.509487 7_1:+63020810 Msa1029570:CDS
AATGCTGTCTCGGTCGGCTA+AGG 0.512532 7_1:-63020143 None:intergenic
TCTGGCGAAAGTCGATTCAC+TGG 0.513098 7_1:-63019965 None:intergenic
GAAATTGAATCATAAATCAA+TGG 0.515473 7_1:+63021275 Msa1029570:three_prime_UTR
ACCTCGCTAGATCGCAGCTC+GGG 0.517111 7_1:-63020632 None:intergenic
ACCATCACAATTCCTGTGAA+TGG 0.520660 7_1:+63018083 Msa1029570:CDS
CCATGAGTATGAGCATCATA+AGG 0.524375 7_1:-63021330 None:intergenic
AACCCATCGCTTTATGGCCG+GGG 0.525718 7_1:+63018168 Msa1029570:CDS
CAACAGCTCTTTGGGAAGCA+AGG 0.527109 7_1:+63018210 Msa1029570:CDS
AACTGCTAAACAGGTTGATG+TGG 0.527926 7_1:+63020511 Msa1029570:intron
AACAGCTCTTTGGGAAGCAA+GGG 0.531781 7_1:+63018211 Msa1029570:CDS
TCCCAAAGAGCTGTTGTCAC+CGG 0.533108 7_1:-63018203 None:intergenic
TTTACATGCAGTTTAGCTGA+AGG 0.539136 7_1:+63021185 Msa1029570:three_prime_UTR
ACTTAAAGACCTATTGGCCG+AGG 0.543102 7_1:+63020096 Msa1029570:CDS
TATTAAGGAGTTCTCAAGGC+TGG 0.544239 7_1:-63020179 None:intergenic
AGAATCATTTAGAACAGCAA+TGG 0.544578 7_1:+63018031 Msa1029570:exon
CCTTGTTGTGCTATCCTCAT+CGG 0.544585 7_1:-63019321 None:intergenic
GTCACAGAAAATTCTACCCT+CGG 0.546078 7_1:-63020113 None:intergenic
ACAACTTCAACATTGATAAG+TGG 0.548116 7_1:-63020593 None:intergenic
TCGAGCGACAAATATGAAGT+TGG 0.550750 7_1:-63019918 None:intergenic
ACCGGAGAATGGAACATCCC+CGG 0.551638 7_1:-63018185 None:intergenic
TACTAGTCCTACTCTGTGAA+GGG 0.555709 7_1:-63018304 None:intergenic
TAAACTTCGAAATGTAGTAC+CGG 0.557369 7_1:+63020849 Msa1029570:CDS
CACTTTCACTGTACGTCCAG+AGG 0.557804 7_1:+63020804 Msa1029570:CDS
TATGTTGCCTAAGCACGAGT+TGG 0.560181 7_1:-63021117 None:intergenic
AAAGAAAGACCATGAGAATG+AGG 0.563142 7_1:+63020063 Msa1029570:CDS
AACCTCGCTAGATCGCAGCT+CGG 0.570253 7_1:-63020633 None:intergenic
CTTGTCATCTTATAATGACA+TGG 0.571094 7_1:-63021217 None:intergenic
ATACTAGTCCTACTCTGTGA+AGG 0.576533 7_1:-63018305 None:intergenic
CTCAATAGAAATTCAACTCG+AGG 0.576580 7_1:+63019451 Msa1029570:CDS
CATCCCCGGCCATAAAGCGA+TGG 0.579415 7_1:-63018171 None:intergenic
CCATGGATGTTCCTTTGCTG+TGG 0.580143 7_1:-63020208 None:intergenic
CCGAGACAGCATTCTTCTAA+GGG 0.581156 7_1:+63020153 Msa1029570:CDS
TAGAAGAATGCTGTCTCGGT+CGG 0.582344 7_1:-63020149 None:intergenic
CCAATCCTAACATCATTCCA+AGG 0.588050 7_1:-63018377 None:intergenic
GTGATGGTGCTGTTGTTGGA+AGG 0.592712 7_1:-63018068 None:intergenic
TTCATATAACTGAAGTCCAA+AGG 0.598027 7_1:-63020990 None:intergenic
ATCCCCGGCCATAAAGCGAT+GGG 0.600133 7_1:-63018170 None:intergenic
ATCGAAGCCAACTCGTGCTT+AGG 0.601183 7_1:+63021110 Msa1029570:three_prime_UTR
GGCATATTAAGGAGTTCTCA+AGG 0.602053 7_1:-63020183 None:intergenic
TAATATGCCATCCACAGCAA+AGG 0.609047 7_1:+63020197 Msa1029570:CDS
TTTCGAATGTGGATGAAACA+GGG 0.611988 7_1:-63018112 None:intergenic
CTAGAACCCCTTCACAGAGT+AGG 0.614208 7_1:+63018297 Msa1029570:CDS
TCCATTCACAGGAATTGTGA+TGG 0.616324 7_1:-63018084 None:intergenic
ACCCGAGCTGCGATCTAGCG+AGG 0.618963 7_1:+63020631 Msa1029570:CDS
GTAAGGAACTAATCCAGCAA+AGG 0.626469 7_1:-63020293 None:intergenic
ACTGCTAAACAGGTTGATGT+GGG 0.629481 7_1:+63020512 Msa1029570:intron
GTAACCAATTCACTTTGTGG+AGG 0.635185 7_1:-63018275 None:intergenic
GAAAACCCTATTCCGGTCAC+CGG 0.635578 7_1:+63018131 Msa1029570:CDS
AACCTCCAAATATTCGACCA+TGG 0.639125 7_1:-63020225 None:intergenic
ACTAGTCCTACTCTGTGAAG+GGG 0.643244 7_1:-63018303 None:intergenic
CTTAAAGACCTATTGGCCGA+GGG 0.646582 7_1:+63020097 Msa1029570:CDS
CCACAGCAAAGGAACATCCA+TGG 0.647840 7_1:+63020208 Msa1029570:CDS
ACGTAGAGTGTTGTGTTGTG+TGG 0.651932 7_1:-63017966 None:intergenic
AAGTTCGGTGTACAAAACGC+AGG 0.655183 7_1:-63020555 None:intergenic
ACAGCTCTTTGGGAAGCAAG+GGG 0.673652 7_1:+63018212 Msa1029570:CDS
GGAATAGCACTGTTCCGATG+AGG 0.682826 7_1:+63019307 Msa1029570:intron
CCGATGAGGATAGCACAACA+AGG 0.684297 7_1:+63019321 Msa1029570:CDS
GAGGTTACTCAATCCAAACA+AGG 0.700558 7_1:+63019470 Msa1029570:CDS
TATATTAGAGCGTATAGATG+CGG 0.704108 7_1:+63020894 Msa1029570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATTGCTAAAAAAA+GGG - chr7_1:63018472-63018491 None:intergenic 10.0%
!! TATTAAAAATTGCTAAAAAA+AGG - chr7_1:63018473-63018492 None:intergenic 10.0%
!! TTAAAAATTGCTAAAAAAAG+GGG - chr7_1:63018471-63018490 None:intergenic 15.0%
!!! AGCAATTTTTAATATTTTTG+AGG + chr7_1:63018479-63018498 Msa1029570:intron 15.0%
!!! AATATTTTTGAGGTTTTTAT+AGG + chr7_1:63018489-63018508 Msa1029570:intron 15.0%
!!! TTTTATAGGAATTTATTATG+TGG + chr7_1:63018503-63018522 Msa1029570:intron 15.0%
!! TTTATAGGAATTTATTATGT+GGG + chr7_1:63018504-63018523 Msa1029570:intron 15.0%
!!! TAAACATATCAAAATTTTAC+AGG + chr7_1:63020374-63020393 Msa1029570:intron 15.0%
!!! TGTAATTTTTTCAGTAAAAA+GGG - chr7_1:63020430-63020449 None:intergenic 15.0%
!! TAAAAATTGCTAAAAAAAGG+GGG - chr7_1:63018470-63018489 None:intergenic 20.0%
!! AATGTGATATGATTATTACA+TGG + chr7_1:63018537-63018556 Msa1029570:intron 20.0%
!!! AATATGATGATGTGTTTAAA+TGG + chr7_1:63018712-63018731 Msa1029570:intron 20.0%
!!! ATATGATGATGTGTTTAAAT+GGG + chr7_1:63018713-63018732 Msa1029570:intron 20.0%
!!! AACTAAACTAGTTTTAAGTT+TGG - chr7_1:63019554-63019573 None:intergenic 20.0%
!!! CAATTTTCTCAGATTATTAT+TGG - chr7_1:63019709-63019728 None:intergenic 20.0%
!! CAAGAAACAATTTGAAAAAA+AGG + chr7_1:63020026-63020045 Msa1029570:CDS 20.0%
!! AATTTGAAAAAAAGGAAAAG+AGG + chr7_1:63020034-63020053 Msa1029570:CDS 20.0%
!! AAAAAAACTTAAAGACCTAT+TGG + chr7_1:63020090-63020109 Msa1029570:CDS 20.0%
!!! GTGTAATTTTTTCAGTAAAA+AGG - chr7_1:63020431-63020450 None:intergenic 20.0%
!! AATAAAATTAACTGCTAAAC+AGG + chr7_1:63020502-63020521 Msa1029570:intron 20.0%
!! ATAATGCTAGTAGAAATATA+TGG - chr7_1:63021082-63021101 None:intergenic 20.0%
!!! TATATTTCTACTAGCATTAT+AGG + chr7_1:63021082-63021101 Msa1029570:three_prime_UTR 20.0%
!!! CAAGTTTTACAAATTATTTG+TGG + chr7_1:63021236-63021255 Msa1029570:three_prime_UTR 20.0%
!! GAAATTGAATCATAAATCAA+TGG + chr7_1:63021275-63021294 Msa1029570:three_prime_UTR 20.0%
!!! GTGTGTGATTTTGTTTTTTA+AGG - chr7_1:63018000-63018019 None:intergenic 25.0%
!! TTTCATCTGATTTTGTTCTT+AGG + chr7_1:63018339-63018358 Msa1029570:CDS 25.0%
!! TTCATCTGATTTTGTTCTTA+GGG + chr7_1:63018340-63018359 Msa1029570:CDS 25.0%
! AAAAATTGCTAAAAAAAGGG+GGG - chr7_1:63018469-63018488 None:intergenic 25.0%
! ATGATTATTACATGGTTAAG+TGG + chr7_1:63018545-63018564 Msa1029570:intron 25.0%
! TGATTATTACATGGTTAAGT+GGG + chr7_1:63018546-63018565 Msa1029570:intron 25.0%
!! TGTGTTTTTCTGATTTTTCA+AGG + chr7_1:63018655-63018674 Msa1029570:intron 25.0%
!! TTTTCATGTGAATTGATATG+TGG + chr7_1:63018678-63018697 Msa1029570:intron 25.0%
! TTTCATGTGAATTGATATGT+GGG + chr7_1:63018679-63018698 Msa1029570:intron 25.0%
!! TATGATGATGTGTTTAAATG+GGG + chr7_1:63018714-63018733 Msa1029570:intron 25.0%
! ATGAAATTGAACTTCAAACT+AGG + chr7_1:63018749-63018768 Msa1029570:intron 25.0%
! TCAAATAAGTGAATTCAAAC+AGG - chr7_1:63018834-63018853 None:intergenic 25.0%
! TAAACATTTGTGAGATTGTT+TGG + chr7_1:63018869-63018888 Msa1029570:intron 25.0%
! AAACATTTGTGAGATTGTTT+GGG + chr7_1:63018870-63018889 Msa1029570:intron 25.0%
!!! CTTATTTTCATAATCTCTCT+AGG + chr7_1:63018939-63018958 Msa1029570:intron 25.0%
!! TTTTTGTCTATTCTTCCATT+AGG + chr7_1:63019177-63019196 Msa1029570:intron 25.0%
!!! TTGACTAGTTTACTGTTATT+TGG + chr7_1:63019213-63019232 Msa1029570:intron 25.0%
! CTATGTTATCTTTATGTTTG+TGG + chr7_1:63019286-63019305 Msa1029570:intron 25.0%
! AGATCAATGTTAACAGTAAT+TGG - chr7_1:63019395-63019414 None:intergenic 25.0%
!!! AATAGTTGGTTCTGTTATAT+GGG + chr7_1:63019418-63019437 Msa1029570:CDS 25.0%
! ACACTAACAATTCAAATTGA+AGG - chr7_1:63019801-63019820 None:intergenic 25.0%
! CTAAAATATTAAGTCACTCT+TGG + chr7_1:63019829-63019848 Msa1029570:intron 25.0%
!! TTTATTTAAGACATACAGAC+AGG - chr7_1:63020488-63020507 None:intergenic 25.0%
! TGAAATATCACTTGTCTAAT+TGG - chr7_1:63020674-63020693 None:intergenic 25.0%
! CTAATTAAAATGTGTACCTT+TGG + chr7_1:63020974-63020993 Msa1029570:three_prime_UTR 25.0%
!!! TGTTAGTTGAAGTTTTAATC+AGG + chr7_1:63021155-63021174 Msa1029570:three_prime_UTR 25.0%
! TATGATTCAATTTCTAATGC+AGG - chr7_1:63021269-63021288 None:intergenic 25.0%
! AATCATAAATCAATGGTATG+AGG + chr7_1:63021282-63021301 Msa1029570:three_prime_UTR 25.0%
! AGAATCATTTAGAACAGCAA+TGG + chr7_1:63018031-63018050 Msa1029570:exon 30.0%
AAAATTGCTAAAAAAAGGGG+GGG - chr7_1:63018468-63018487 None:intergenic 30.0%
GAAGTGGTTGAAATCAAATT+AGG + chr7_1:63018568-63018587 Msa1029570:intron 30.0%
!! GATTTGATGACAAGTAGTTT+TGG + chr7_1:63018595-63018614 Msa1029570:intron 30.0%
GTCAAGACTTCATGAAAATA+AGG - chr7_1:63019110-63019129 None:intergenic 30.0%
AACATTGATCTCACAATAGT+TGG + chr7_1:63019404-63019423 Msa1029570:CDS 30.0%
!! CAATAGTTGGTTCTGTTATA+TGG + chr7_1:63019417-63019436 Msa1029570:CDS 30.0%
CAAACAAGGTACATTTCTTA+GGG + chr7_1:63019484-63019503 Msa1029570:intron 30.0%
!! TTGATAATGCCATTCATGAA+GGG - chr7_1:63019613-63019632 None:intergenic 30.0%
!! ATTGATAATGCCATTCATGA+AGG - chr7_1:63019614-63019633 None:intergenic 30.0%
TTCATGAATGGCATTATCAA+TGG + chr7_1:63019613-63019632 Msa1029570:intron 30.0%
! ATAAAGCATTAACACAGACA+CGG + chr7_1:63019661-63019680 Msa1029570:intron 30.0%
AATATTAAGTCACTCTTGGT+CGG + chr7_1:63019833-63019852 Msa1029570:intron 30.0%
TTGAAAAAAAGGAAAAGAGG+AGG + chr7_1:63020037-63020056 Msa1029570:CDS 30.0%
!!! TTTTTTCTTCCTCATTCTCA+TGG - chr7_1:63020075-63020094 None:intergenic 30.0%
! TGATCAACTTCTAGAAAGTA+AGG - chr7_1:63020313-63020332 None:intergenic 30.0%
TTCAGTAAAAAGGGCAAAAA+CGG - chr7_1:63020421-63020440 None:intergenic 30.0%
ACAACTTCAACATTGATAAG+TGG - chr7_1:63020596-63020615 None:intergenic 30.0%
! GTGATATTTCATTAGCTTGA+TGG + chr7_1:63020683-63020702 Msa1029570:intron 30.0%
TAAACTTCGAAATGTAGTAC+CGG + chr7_1:63020849-63020868 Msa1029570:CDS 30.0%
CATCTATACGCTCTAATATA+CGG - chr7_1:63020894-63020913 None:intergenic 30.0%
TATATTAGAGCGTATAGATG+CGG + chr7_1:63020894-63020913 Msa1029570:CDS 30.0%
TTCATATAACTGAAGTCCAA+AGG - chr7_1:63020993-63021012 None:intergenic 30.0%
! TTAGGCAACATAAGTGATTT+TGG + chr7_1:63021128-63021147 Msa1029570:three_prime_UTR 30.0%
CTTGTCATCTTATAATGACA+TGG - chr7_1:63021220-63021239 None:intergenic 30.0%
ATCATAAGGATCACAAAGTA+TGG - chr7_1:63021319-63021338 None:intergenic 30.0%
TTTCGAATGTGGATGAAACA+GGG - chr7_1:63018115-63018134 None:intergenic 35.0%
! TTTTCGAATGTGGATGAAAC+AGG - chr7_1:63018116-63018135 None:intergenic 35.0%
CTAGTAACCAATTCACTTTG+TGG - chr7_1:63018281-63018300 None:intergenic 35.0%
TTGTTCTTAGGGAGCAATAT+AGG + chr7_1:63018351-63018370 Msa1029570:CDS 35.0%
TGTTCTTAGGGAGCAATATA+GGG + chr7_1:63018352-63018371 Msa1029570:CDS 35.0%
TTTGGGAGAGTTTATGAACA+CGG + chr7_1:63018887-63018906 Msa1029570:intron 35.0%
!! CATGAAAATAAGGCATCGTT+TGG - chr7_1:63019100-63019119 None:intergenic 35.0%
TGAGACTGCATAAATTGAGT+AGG + chr7_1:63019150-63019169 Msa1029570:intron 35.0%
GAAGCAGTAACAAGTATAAG+TGG - chr7_1:63019347-63019366 None:intergenic 35.0%
!! TTGGTTCTGTTATATGGGTT+GGG + chr7_1:63019423-63019442 Msa1029570:CDS 35.0%
!! CTCGAGTTGAATTTCTATTG+AGG - chr7_1:63019453-63019472 None:intergenic 35.0%
CTCAATAGAAATTCAACTCG+AGG + chr7_1:63019451-63019470 Msa1029570:CDS 35.0%
CCTAAGAAATGTACCTTGTT+TGG - chr7_1:63019486-63019505 None:intergenic 35.0%
CCAAACAAGGTACATTTCTT+AGG + chr7_1:63019483-63019502 Msa1029570:intron 35.0%
TTGAAAGTAACCACATGTGT+CGG + chr7_1:63019746-63019765 Msa1029570:intron 35.0%
AAAGAAAGACCATGAGAATG+AGG + chr7_1:63020063-63020082 Msa1029570:CDS 35.0%
AACATCCATGGTCGAATATT+TGG + chr7_1:63020220-63020239 Msa1029570:CDS 35.0%
AGAATGAAGAAAAGACTCAC+AGG - chr7_1:63020352-63020371 None:intergenic 35.0%
CTTGTGTATTATGTGAACAC+AGG + chr7_1:63020762-63020781 Msa1029570:intron 35.0%
ATTCTGATGTCCAGTTATTG+AGG + chr7_1:63021045-63021064 Msa1029570:three_prime_UTR 35.0%
TTCTGATGTCCAGTTATTGA+GGG + chr7_1:63021046-63021065 Msa1029570:three_prime_UTR 35.0%
TTTACATGCAGTTTAGCTGA+AGG + chr7_1:63021185-63021204 Msa1029570:three_prime_UTR 35.0%
!! AATTGTGATGGTGCTGTTGT+TGG - chr7_1:63018075-63018094 None:intergenic 40.0%
ACCATCACAATTCCTGTGAA+TGG + chr7_1:63018083-63018102 Msa1029570:CDS 40.0%
TCCATTCACAGGAATTGTGA+TGG - chr7_1:63018087-63018106 None:intergenic 40.0%
CACATTCGAAAACCCTATTC+CGG + chr7_1:63018124-63018143 Msa1029570:CDS 40.0%
GTAACCAATTCACTTTGTGG+AGG - chr7_1:63018278-63018297 None:intergenic 40.0%
TACTAGTCCTACTCTGTGAA+GGG - chr7_1:63018307-63018326 None:intergenic 40.0%
ATACTAGTCCTACTCTGTGA+AGG - chr7_1:63018308-63018327 None:intergenic 40.0%
CCAATCCTAACATCATTCCA+AGG - chr7_1:63018380-63018399 None:intergenic 40.0%
CCTTGGAATGATGTTAGGAT+TGG + chr7_1:63018377-63018396 Msa1029570:CDS 40.0%
GCTTGAAGATCTTGATGCTT+TGG + chr7_1:63018406-63018425 Msa1029570:CDS 40.0%
ACATGGCACCTTAACAGAAA+TGG - chr7_1:63018438-63018457 None:intergenic 40.0%
TTACATGGTTAAGTGGGAAG+TGG + chr7_1:63018552-63018571 Msa1029570:intron 40.0%
GTTCAAAGTAGAAGCCTAGT+AGG + chr7_1:63018771-63018790 Msa1029570:intron 40.0%
CAAACTACATGTGACCTACT+AGG - chr7_1:63018788-63018807 None:intergenic 40.0%
TATAGAAACAGCTTAGACGC+AGG + chr7_1:63019024-63019043 Msa1029570:intron 40.0%
TTCTTCCATTAGGCTGAGTA+TGG + chr7_1:63019187-63019206 Msa1029570:intron 40.0%
AAGTACCATACTCAGCCTAA+TGG - chr7_1:63019195-63019214 None:intergenic 40.0%
GCTACATGAAATCTTCACAG+TGG - chr7_1:63019256-63019275 None:intergenic 40.0%
!! GTTGGTTCTGTTATATGGGT+TGG + chr7_1:63019422-63019441 Msa1029570:CDS 40.0%
GAGGTTACTCAATCCAAACA+AGG + chr7_1:63019470-63019489 Msa1029570:CDS 40.0%
AGAATAGTGCCCTTCATGAA+TGG + chr7_1:63019601-63019620 Msa1029570:intron 40.0%
GAGTCAATGTGTCAGTATTG+TGG - chr7_1:63019687-63019706 None:intergenic 40.0%
! ATTCAAATTGAAGGCGTGTC+TGG - chr7_1:63019792-63019811 None:intergenic 40.0%
TGTCACTGTAACTCATGTAG+AGG + chr7_1:63019865-63019884 Msa1029570:intron 40.0%
GTCACTGTAACTCATGTAGA+GGG + chr7_1:63019866-63019885 Msa1029570:intron 40.0%
TCGAGCGACAAATATGAAGT+TGG - chr7_1:63019921-63019940 None:intergenic 40.0%
GTCACAGAAAATTCTACCCT+CGG - chr7_1:63020116-63020135 None:intergenic 40.0%
TATTAAGGAGTTCTCAAGGC+TGG - chr7_1:63020182-63020201 None:intergenic 40.0%
GGCATATTAAGGAGTTCTCA+AGG - chr7_1:63020186-63020205 None:intergenic 40.0%
TTGCTGTGGATGGCATATTA+AGG - chr7_1:63020197-63020216 None:intergenic 40.0%
TAATATGCCATCCACAGCAA+AGG + chr7_1:63020197-63020216 Msa1029570:CDS 40.0%
ATCCATGGTCGAATATTTGG+AGG + chr7_1:63020223-63020242 Msa1029570:CDS 40.0%
AACCTCCAAATATTCGACCA+TGG - chr7_1:63020228-63020247 None:intergenic 40.0%
GATGAATCGTGCGTTTGAAT+TGG + chr7_1:63020252-63020271 Msa1029570:CDS 40.0%
GTAAGGAACTAATCCAGCAA+AGG - chr7_1:63020296-63020315 None:intergenic 40.0%
TACACTGCACCAACTATTGA+TGG + chr7_1:63020446-63020465 Msa1029570:intron 40.0%
ACACTGCACCAACTATTGAT+GGG + chr7_1:63020447-63020466 Msa1029570:intron 40.0%
!! AACTGCTAAACAGGTTGATG+TGG + chr7_1:63020511-63020530 Msa1029570:intron 40.0%
!! ACTGCTAAACAGGTTGATGT+GGG + chr7_1:63020512-63020531 Msa1029570:intron 40.0%
ACATTGATAAGTGGCTGATC+TGG - chr7_1:63020587-63020606 None:intergenic 40.0%
GACGTACAGTGAAAGTGAAA+TGG - chr7_1:63020801-63020820 None:intergenic 40.0%
! TTTTTCATAGCCTTTGCCTC+TGG - chr7_1:63020823-63020842 None:intergenic 40.0%
GAGGCAAAGGCTATGAAAAA+TGG + chr7_1:63020823-63020842 Msa1029570:CDS 40.0%
GAAGAGAAACAGCAATTAGC+TGG + chr7_1:63020947-63020966 Msa1029570:three_prime_UTR 40.0%
AAACTTGTGCCCTCAATAAC+TGG - chr7_1:63021058-63021077 None:intergenic 40.0%
CCATGAGTATGAGCATCATA+AGG - chr7_1:63021333-63021352 None:intergenic 40.0%
CCTTATGATGCTCATACTCA+TGG + chr7_1:63021330-63021349 Msa1029570:three_prime_UTR 40.0%
!! ACGTAGAGTGTTGTGTTGTG+TGG - chr7_1:63017969-63017988 None:intergenic 45.0%
ACAGGGATTGTTCCATTCAC+AGG - chr7_1:63018098-63018117 None:intergenic 45.0%
! CGGAATAGGGTTTTCGAATG+TGG - chr7_1:63018126-63018145 None:intergenic 45.0%
! AACAGCTCTTTGGGAAGCAA+GGG + chr7_1:63018211-63018230 Msa1029570:CDS 45.0%
TGCTCCTCCACAAAGTGAAT+TGG + chr7_1:63018271-63018290 Msa1029570:CDS 45.0%
ACTAGTCCTACTCTGTGAAG+GGG - chr7_1:63018306-63018325 None:intergenic 45.0%
GGGATCCTTGGAATGATGTT+AGG + chr7_1:63018372-63018391 Msa1029570:CDS 45.0%
GAAGATCTTGATGCTTTGGC+TGG + chr7_1:63018410-63018429 Msa1029570:CDS 45.0%
GGCTGGAACCATTTCTGTTA+AGG + chr7_1:63018427-63018446 Msa1029570:CDS 45.0%
!! AAAGGGGGGGAATTTTGACA+TGG - chr7_1:63018455-63018474 None:intergenic 45.0%
! CCTTGTTGTGCTATCCTCAT+CGG - chr7_1:63019324-63019343 None:intergenic 45.0%
TCGCTCGAGACTCAAAAACT+GGG + chr7_1:63019933-63019952 Msa1029570:CDS 45.0%
TCGAGACTCAAAAACTGGGA+AGG + chr7_1:63019937-63019956 Msa1029570:CDS 45.0%
! AGTTTTTCGCGAGCAGTTTC+TGG - chr7_1:63019986-63020005 None:intergenic 45.0%
ACTTAAAGACCTATTGGCCG+AGG + chr7_1:63020096-63020115 Msa1029570:CDS 45.0%
CTTAAAGACCTATTGGCCGA+GGG + chr7_1:63020097-63020116 Msa1029570:CDS 45.0%
AAATTCTACCCTCGGCCAAT+AGG - chr7_1:63020108-63020127 None:intergenic 45.0%
TAGAAGAATGCTGTCTCGGT+CGG - chr7_1:63020152-63020171 None:intergenic 45.0%
ACCGAGACAGCATTCTTCTA+AGG + chr7_1:63020152-63020171 Msa1029570:CDS 45.0%
CCCTTAGAAGAATGCTGTCT+CGG - chr7_1:63020156-63020175 None:intergenic 45.0%
CCGAGACAGCATTCTTCTAA+GGG + chr7_1:63020153-63020172 Msa1029570:CDS 45.0%
TCAACAGCTTATGCCTTTGC+TGG + chr7_1:63020280-63020299 Msa1029570:CDS 45.0%
GATCCTCTCCCATCAATAGT+TGG - chr7_1:63020458-63020477 None:intergenic 45.0%
!! AAGTTCGGTGTACAAAACGC+AGG - chr7_1:63020558-63020577 None:intergenic 45.0%
CTGATCTGGATCGTGAAGTT+CGG - chr7_1:63020573-63020592 None:intergenic 45.0%
TATGTTGCCTAAGCACGAGT+TGG - chr7_1:63021120-63021139 None:intergenic 45.0%
!! GTGATGGTGCTGTTGTTGGA+AGG - chr7_1:63018071-63018090 None:intergenic 50.0%
GAAAACCCTATTCCGGTCAC+CGG + chr7_1:63018131-63018150 Msa1029570:CDS 50.0%
ACCGGAAACCCATCGCTTTA+TGG + chr7_1:63018162-63018181 Msa1029570:CDS 50.0%
! GCCATAAAGCGATGGGTTTC+CGG - chr7_1:63018166-63018185 None:intergenic 50.0%
GAAACCCATCGCTTTATGGC+CGG + chr7_1:63018166-63018185 Msa1029570:CDS 50.0%
AAACCCATCGCTTTATGGCC+GGG + chr7_1:63018167-63018186 Msa1029570:CDS 50.0%
TCCGGTGACAACAGCTCTTT+GGG + chr7_1:63018202-63018221 Msa1029570:CDS 50.0%
TCCCAAAGAGCTGTTGTCAC+CGG - chr7_1:63018206-63018225 None:intergenic 50.0%
! CAACAGCTCTTTGGGAAGCA+AGG + chr7_1:63018210-63018229 Msa1029570:CDS 50.0%
! ACAGCTCTTTGGGAAGCAAG+GGG + chr7_1:63018212-63018231 Msa1029570:CDS 50.0%
!! CTTTGTGGAGGAGCATCTCT+TGG - chr7_1:63018266-63018285 None:intergenic 50.0%
CTAGAACCCCTTCACAGAGT+AGG + chr7_1:63018297-63018316 Msa1029570:CDS 50.0%
GGGAGCAATATAGGGATCCT+TGG + chr7_1:63018360-63018379 Msa1029570:CDS 50.0%
GGAATAGCACTGTTCCGATG+AGG + chr7_1:63019307-63019326 Msa1029570:intron 50.0%
CCGATGAGGATAGCACAACA+AGG + chr7_1:63019321-63019340 Msa1029570:CDS 50.0%
GGGCACTATTCTGTCATGAG+AGG - chr7_1:63019593-63019612 None:intergenic 50.0%
GTCGCTCGAGACTCAAAAAC+TGG + chr7_1:63019932-63019951 Msa1029570:CDS 50.0%
! TCTGGCGAAAGTCGATTCAC+TGG - chr7_1:63019968-63019987 None:intergenic 50.0%
! GGATGTTCCTTTGCTGTGGA+TGG - chr7_1:63020207-63020226 None:intergenic 50.0%
CCATGGATGTTCCTTTGCTG+TGG - chr7_1:63020211-63020230 None:intergenic 50.0%
CCACAGCAAAGGAACATCCA+TGG + chr7_1:63020208-63020227 Msa1029570:CDS 50.0%
GCACCAACTATTGATGGGAG+AGG + chr7_1:63020452-63020471 Msa1029570:intron 50.0%
CACTTTCACTGTACGTCCAG+AGG + chr7_1:63020804-63020823 Msa1029570:CDS 50.0%
CGTGCTTCTTCTTCTGTTGC+CGG - chr7_1:63020871-63020890 None:intergenic 50.0%
ATCGAAGCCAACTCGTGCTT+AGG + chr7_1:63021110-63021129 Msa1029570:three_prime_UTR 50.0%
AACCCATCGCTTTATGGCCG+GGG + chr7_1:63018168-63018187 Msa1029570:CDS 55.0%
ATCCCCGGCCATAAAGCGAT+GGG - chr7_1:63018173-63018192 None:intergenic 55.0%
ACCGGAGAATGGAACATCCC+CGG - chr7_1:63018188-63018207 None:intergenic 55.0%
GAGCTGTTGTCACCGGAGAA+TGG - chr7_1:63018199-63018218 None:intergenic 55.0%
CTCCGGTGACAACAGCTCTT+TGG + chr7_1:63018201-63018220 Msa1029570:CDS 55.0%
!! TGTGGAGGAGCATCTCTTGG+TGG - chr7_1:63018263-63018282 None:intergenic 55.0%
! CACATGTGTCGGTGTCCTGT+CGG + chr7_1:63019757-63019776 Msa1029570:intron 55.0%
!! TGTCGGTGTCCTGTCGGTTT+CGG + chr7_1:63019763-63019782 Msa1029570:intron 55.0%
AATGCTGTCTCGGTCGGCTA+AGG - chr7_1:63020146-63020165 None:intergenic 55.0%
AACCTCGCTAGATCGCAGCT+CGG - chr7_1:63020636-63020655 None:intergenic 55.0%
CACTGTACGTCCAGAGGCAA+AGG + chr7_1:63020810-63020829 Msa1029570:CDS 55.0%
! AAGCGATGGGTTTCCGGTCG+CGG - chr7_1:63018160-63018179 None:intergenic 60.0%
CATCCCCGGCCATAAAGCGA+TGG - chr7_1:63018174-63018193 None:intergenic 60.0%
GCCGGGGATGTTCCATTCTC+CGG + chr7_1:63018184-63018203 Msa1029570:CDS 60.0%
CGACAGGACACCGACACATG+TGG - chr7_1:63019759-63019778 None:intergenic 60.0%
GTCTGGTGTCCGAAACCGAC+AGG - chr7_1:63019775-63019794 None:intergenic 60.0%
ACCTCGCTAGATCGCAGCTC+GGG - chr7_1:63020635-63020654 None:intergenic 60.0%
GGGAGCCGGTGACCGGAATA+GGG - chr7_1:63018139-63018158 None:intergenic 65.0%
! AGCGATGGGTTTCCGGTCGC+GGG - chr7_1:63018159-63018178 None:intergenic 65.0%
CTGTCTCGGTCGGCTAAGGC+TGG - chr7_1:63020142-63020161 None:intergenic 65.0%
ACCCGAGCTGCGATCTAGCG+AGG + chr7_1:63020631-63020650 Msa1029570:CDS 65.0%
CGGGAGCCGGTGACCGGAAT+AGG - chr7_1:63018140-63018159 None:intergenic 70.0%
GGGTTTCCGGTCGCGGGAGC+CGG - chr7_1:63018153-63018172 None:intergenic 75.0%
! CGGTCGCGGGAGCCGGTGAC+CGG - chr7_1:63018146-63018165 None:intergenic 80.0%
!!! CGGTCACCGGCTCCCGCGAC+CGG + chr7_1:63018144-63018163 Msa1029570:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 63017957 63021398 63017957 ID=Msa1029570;Name=Msa1029570
chr7_1 mRNA 63017957 63021398 63017957 ID=Msa1029570-mRNA-1;Parent=Msa1029570;Name=Msa1029570-mRNA-1;_AED=0.18;_eAED=0.18;_QI=93|1|1|1|1|1|5|453|444
chr7_1 exon 63017957 63018448 63017957 ID=Msa1029570-mRNA-1:exon:13600;Parent=Msa1029570-mRNA-1
chr7_1 exon 63019314 63019491 63019314 ID=Msa1029570-mRNA-1:exon:13601;Parent=Msa1029570-mRNA-1
chr7_1 exon 63019885 63020351 63019885 ID=Msa1029570-mRNA-1:exon:13602;Parent=Msa1029570-mRNA-1
chr7_1 exon 63020524 63020652 63020524 ID=Msa1029570-mRNA-1:exon:13603;Parent=Msa1029570-mRNA-1
chr7_1 exon 63020784 63021398 63020784 ID=Msa1029570-mRNA-1:exon:13604;Parent=Msa1029570-mRNA-1
chr7_1 five_prime_UTR 63017957 63018049 63017957 ID=Msa1029570-mRNA-1:five_prime_utr;Parent=Msa1029570-mRNA-1
chr7_1 CDS 63018050 63018448 63018050 ID=Msa1029570-mRNA-1:cds;Parent=Msa1029570-mRNA-1
chr7_1 CDS 63019314 63019491 63019314 ID=Msa1029570-mRNA-1:cds;Parent=Msa1029570-mRNA-1
chr7_1 CDS 63019885 63020351 63019885 ID=Msa1029570-mRNA-1:cds;Parent=Msa1029570-mRNA-1
chr7_1 CDS 63020524 63020652 63020524 ID=Msa1029570-mRNA-1:cds;Parent=Msa1029570-mRNA-1
chr7_1 CDS 63020784 63020945 63020784 ID=Msa1029570-mRNA-1:cds;Parent=Msa1029570-mRNA-1
chr7_1 three_prime_UTR 63020946 63021398 63020946 ID=Msa1029570-mRNA-1:three_prime_utr;Parent=Msa1029570-mRNA-1
Gene Sequence

>Msa1029570

ATGGATTTGAATGTTTCTCCTTCCAACAACAGCACCATCACAATTCCTGTGAATGGAACAATCCCTGTTTCATCCACATTCGAAAACCCTATTCCGGTCACCGGCTCCCGCGACCGGAAACCCATCGCTTTATGGCCGGGGATGTTCCATTCTCCGGTGACAACAGCTCTTTGGGAAGCAAGGGGCAAAATCTTTGAGAGACTTCTTGATCCACCAAGAGATGCTCCTCCACAAAGTGAATTGGTTACTAGAACCCCTTCACAGAGTAGGACTAGTATTCTTTACAATTTTTCATCTGATTTTGTTCTTAGGGAGCAATATAGGGATCCTTGGAATGATGTTAGGATTGGAAAGTTGCTTGAAGATCTTGATGCTTTGGCTGGAACCATTTCTGTTAAGCACTGTTCCGATGAGGATAGCACAACAAGGCCACTTATACTTGTTACTGCTTCTGTTGATAAGATTGTACTAAAGAAACCAATTACTGTTAACATTGATCTCACAATAGTTGGTTCTGTTATATGGGTTGGGCGCTCCTCAATAGAAATTCAACTCGAGGTTACTCAATCCAAACAAGAGGGCAGTGATTCAGACTCAGTAGTACTAACAGCCAACTTCATATTTGTCGCTCGAGACTCAAAAACTGGGAAGGCTGCTCCAGTGAATCGACTTTCGCCAGAAACTGCTCGCGAAAAACTTCTTTTTGAACAAGCTGAAGCAAGAAACAATTTGAAAAAAAGGAAAAGAGGAGGTGAAAAGAAAGACCATGAGAATGAGGAAGAAAAAAAACTTAAAGACCTATTGGCCGAGGGTAGAATTTTCTGTGACATGCCAGCCTTAGCCGACCGAGACAGCATTCTTCTAAGGGATACCAGCCTTGAGAACTCCTTAATATGCCATCCACAGCAAAGGAACATCCATGGTCGAATATTTGGAGGTTTCTTGATGAATCGTGCGTTTGAATTGGCTTTCTCAACAGCTTATGCCTTTGCTGGATTAGTTCCTTACTTTCTAGAAGTTGATCATGTTGATTTTCTCAGACCTGTTGATGTGGGCGATTTCTTGCGTCTCAAATCCTGCGTTTTGTACACCGAACTTCACGATCCAGATCAGCCACTTATCAATGTTGAAGTTGTTGCTCATGTTACAAGACCCGAGCTGCGATCTAGCGAGGTATCAAATACTTTCCATTTCACTTTCACTGTACGTCCAGAGGCAAAGGCTATGAAAAATGGATTTAAACTTCGAAATGTAGTACCGGCAACAGAAGAAGAAGCACGCCGTATATTAGAGCGTATAGATGCGGACAACTTGAATGAATTCTTCAGAACATAA

Protein sequence

>Msa1029570

MDLNVSPSNNSTITIPVNGTIPVSSTFENPIPVTGSRDRKPIALWPGMFHSPVTTALWEARGKIFERLLDPPRDAPPQSELVTRTPSQSRTSILYNFSSDFVLREQYRDPWNDVRIGKLLEDLDALAGTISVKHCSDEDSTTRPLILVTASVDKIVLKKPITVNIDLTIVGSVIWVGRSSIEIQLEVTQSKQEGSDSDSVVLTANFIFVARDSKTGKAAPVNRLSPETAREKLLFEQAEARNNLKKRKRGGEKKDHENEEEKKLKDLLAEGRIFCDMPALADRDSILLRDTSLENSLICHPQQRNIHGRIFGGFLMNRAFELAFSTAYAFAGLVPYFLEVDHVDFLRPVDVGDFLRLKSCVLYTELHDPDQPLINVEVVAHVTRPELRSSEVSNTFHFTFTVRPEAKAMKNGFKLRNVVPATEEEARRILERIDADNLNEFFRT*