Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106810 | XP_024641575.1 | 95.761 | 401 | 11 | 3 | 4 | 404 | 51 | 445 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106810 | sp|Q8GYC1|IDD4_ARATH | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.89e-114 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106810 | A0A396JLF3 | 95.761 | 401 | 11 | 3 | 4 | 404 | 51 | 445 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106810 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022090 | Msa0106810 | 0.802821 | 4.677688e-49 | -8.615850e-47 |
| Msa0025060 | Msa0106810 | 0.832253 | 1.050220e-55 | -8.615850e-47 |
| Msa0025090 | Msa0106810 | 0.817551 | 3.109178e-52 | -8.615850e-47 |
| Msa0027610 | Msa0106810 | 0.816450 | 5.494728e-52 | -8.615850e-47 |
| Msa0030320 | Msa0106810 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0036560 | Msa0106810 | 0.806864 | 6.688565e-50 | -8.615850e-47 |
| Msa0071640 | Msa0106810 | -0.806468 | 8.106601e-50 | -8.615850e-47 |
| Msa0075370 | Msa0106810 | 0.817473 | 3.237522e-52 | -8.615850e-47 |
| Msa0077920 | Msa0106810 | 0.807762 | 4.315164e-50 | -8.615850e-47 |
| Msa0095550 | Msa0106810 | 0.812347 | 4.437339e-51 | -8.615850e-47 |
| Msa0106810 | Msa0117400 | 0.803450 | 3.465400e-49 | -8.615850e-47 |
| Msa0106810 | Msa0125810 | 0.810209 | 1.291755e-50 | -8.615850e-47 |
| Msa0106810 | Msa0139280 | 0.817571 | 3.077025e-52 | -8.615850e-47 |
| Msa0106810 | Msa0153290 | 0.973480 | 1.687262e-136 | -8.615850e-47 |
| Msa0106810 | Msa0153890 | 0.805495 | 1.298942e-49 | -8.615850e-47 |
| Msa0106810 | Msa0167800 | 0.828567 | 8.367019e-55 | -8.615850e-47 |
| Msa0106810 | Msa0172110 | 0.815827 | 7.572109e-52 | -8.615850e-47 |
| Msa0106810 | Msa0192890 | -0.844120 | 9.205925e-59 | -8.615850e-47 |
| Msa0106810 | Msa0196530 | -0.807898 | 4.037190e-50 | -8.615850e-47 |
| Msa0106810 | Msa0225370 | 0.808742 | 2.667467e-50 | -8.615850e-47 |
| Msa0106810 | Msa0226580 | 0.823755 | 1.167653e-53 | -8.615850e-47 |
| Msa0106810 | Msa0235020 | -0.824778 | 6.712227e-54 | -8.615850e-47 |
| Msa0106810 | Msa0238420 | -0.804158 | 2.470335e-49 | -8.615850e-47 |
| Msa0106810 | Msa0241580 | 0.801613 | 8.289696e-49 | -8.615850e-47 |
| Msa0106810 | Msa0266380 | 0.823657 | 1.230648e-53 | -8.615850e-47 |
| Msa0106810 | Msa0273420 | -0.826899 | 2.105746e-54 | -8.615850e-47 |
| Msa0106810 | Msa0279490 | 0.803073 | 4.148818e-49 | -8.615850e-47 |
| Msa0106810 | Msa0313680 | -0.839939 | 1.173415e-57 | -8.615850e-47 |
| Msa0106810 | Msa0341860 | 0.819043 | 1.428963e-52 | -8.615850e-47 |
| Msa0106810 | Msa0370350 | 0.801831 | 7.479598e-49 | -8.615850e-47 |
| Msa0106810 | Msa0384130 | 0.829875 | 4.029632e-55 | -8.615850e-47 |
| Msa0106810 | Msa0384220 | -0.811588 | 6.496297e-51 | -8.615850e-47 |
| Msa0106810 | Msa0434840 | 0.818627 | 1.776086e-52 | -8.615850e-47 |
| Msa0106810 | Msa0456950 | 0.800137 | 1.659726e-48 | -8.615850e-47 |
| Msa0106810 | Msa0478750 | 0.836602 | 8.500621e-57 | -8.615850e-47 |
| Msa0106810 | Msa0522830 | 0.843383 | 1.449599e-58 | -8.615850e-47 |
| Msa0106810 | Msa0540160 | 0.813110 | 3.020619e-51 | -8.615850e-47 |
| Msa0106810 | Msa0622070 | -0.833592 | 4.882104e-56 | -8.615850e-47 |
| Msa0106810 | Msa1034870 | -0.809887 | 1.514812e-50 | -8.615850e-47 |
| Msa0106810 | Msa1074910 | -0.814479 | 1.508422e-51 | -8.615850e-47 |
| Msa0106810 | Msa1138730 | 0.808066 | 3.717466e-50 | -8.615850e-47 |
| Msa0106810 | Msa1192790 | 0.806737 | 7.112173e-50 | -8.615850e-47 |
| Msa0106810 | Msa1203090 | 0.810165 | 1.320332e-50 | -8.615850e-47 |
| Msa0106810 | Msa1239870 | -0.812807 | 3.520644e-51 | -8.615850e-47 |
| Msa0106810 | Msa1258600 | -0.807086 | 6.000343e-50 | -8.615850e-47 |
| Msa0106810 | Msa1295840 | 0.808720 | 2.696114e-50 | -8.615850e-47 |
| Msa0106810 | Msa1304980 | -0.843356 | 1.473354e-58 | -8.615850e-47 |
| Msa0106810 | Msa1327400 | 0.810473 | 1.132612e-50 | -8.615850e-47 |
| Msa0106810 | Msa1327420 | 0.809482 | 1.851804e-50 | -8.615850e-47 |
| Msa0106810 | Msa1395700 | 0.822578 | 2.198068e-53 | -8.615850e-47 |
| Msa0106810 | Msa1400940 | -0.804313 | 2.293525e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106810 | MtrunA17_Chr1g0162971 | 95.761 | 401 | 11 | 3 | 4 | 404 | 51 | 445 | 0.0 | 730 |
| Msa0106810 | MtrunA17_Chr1g0210821 | 56.313 | 396 | 122 | 13 | 4 | 358 | 54 | 439 | 5.68e-130 | 385 |
| Msa0106810 | MtrunA17_Chr1g0163001 | 50.515 | 485 | 118 | 16 | 5 | 394 | 54 | 511 | 1.81e-127 | 377 |
| Msa0106810 | MtrunA17_Chr1g0199101 | 48.447 | 483 | 117 | 16 | 4 | 385 | 57 | 508 | 1.37e-123 | 368 |
| Msa0106810 | MtrunA17_Chr2g0330171 | 55.247 | 324 | 84 | 8 | 4 | 325 | 56 | 320 | 7.05e-108 | 325 |
| Msa0106810 | MtrunA17_Chr1g0185121 | 48.011 | 377 | 136 | 9 | 4 | 364 | 50 | 382 | 2.60e-106 | 320 |
| Msa0106810 | MtrunA17_Chr4g0040571 | 45.514 | 457 | 138 | 15 | 4 | 368 | 49 | 486 | 6.07e-106 | 322 |
| Msa0106810 | MtrunA17_Chr8g0342421 | 55.247 | 324 | 99 | 8 | 4 | 325 | 72 | 351 | 1.42e-105 | 321 |
| Msa0106810 | MtrunA17_Chr1g0181381 | 51.657 | 362 | 136 | 8 | 4 | 343 | 48 | 392 | 2.78e-105 | 320 |
| Msa0106810 | MtrunA17_Chr7g0263941 | 52.454 | 326 | 92 | 6 | 4 | 329 | 44 | 306 | 4.28e-105 | 316 |
| Msa0106810 | MtrunA17_Chr7g0268961 | 50.291 | 344 | 125 | 9 | 2 | 342 | 30 | 330 | 1.13e-99 | 305 |
| Msa0106810 | MtrunA17_Chr8g0373541 | 83.007 | 153 | 26 | 0 | 4 | 156 | 43 | 195 | 1.53e-99 | 305 |
| Msa0106810 | MtrunA17_Chr1g0191991 | 48.148 | 351 | 84 | 9 | 4 | 327 | 73 | 352 | 1.80e-98 | 303 |
| Msa0106810 | MtrunA17_Chr1g0151351 | 81.046 | 153 | 28 | 1 | 4 | 155 | 51 | 203 | 9.60e-96 | 294 |
| Msa0106810 | MtrunA17_Chr4g0029521 | 48.138 | 349 | 123 | 10 | 4 | 335 | 48 | 355 | 7.90e-95 | 293 |
| Msa0106810 | MtrunA17_Chr2g0326381 | 73.743 | 179 | 42 | 3 | 4 | 177 | 42 | 220 | 3.51e-94 | 288 |
| Msa0106810 | MtrunA17_Chr3g0141431 | 74.324 | 148 | 37 | 1 | 4 | 150 | 32 | 179 | 6.90e-86 | 267 |
| Msa0106810 | MtrunA17_Chr2g0324991 | 82.443 | 131 | 23 | 0 | 5 | 135 | 3 | 133 | 1.83e-82 | 249 |
| Msa0106810 | MtrunA17_Chr6g0479921 | 60.959 | 146 | 56 | 1 | 4 | 148 | 39 | 184 | 7.80e-67 | 219 |
| Msa0106810 | MtrunA17_Chr8g0375521 | 60.959 | 146 | 55 | 2 | 4 | 147 | 37 | 182 | 2.38e-65 | 214 |
| Msa0106810 | MtrunA17_Chr1g0200421 | 35.099 | 151 | 86 | 4 | 8 | 146 | 236 | 386 | 2.47e-24 | 104 |
| Msa0106810 | MtrunA17_Chr3g0123941 | 30.102 | 196 | 118 | 5 | 4 | 191 | 118 | 302 | 3.12e-23 | 99.4 |
| Msa0106810 | MtrunA17_Chr2g0320341 | 35.526 | 152 | 84 | 4 | 6 | 143 | 227 | 378 | 9.18e-23 | 99.4 |
| Msa0106810 | MtrunA17_Chr5g0422571 | 36.486 | 148 | 83 | 4 | 17 | 154 | 108 | 254 | 1.62e-20 | 91.3 |
| Msa0106810 | MtrunA17_Chr8g0352011 | 38.129 | 139 | 76 | 5 | 17 | 146 | 173 | 310 | 2.35e-20 | 91.3 |
| Msa0106810 | MtrunA17_Chr1g0198651 | 36.424 | 151 | 81 | 5 | 17 | 154 | 109 | 257 | 7.76e-20 | 89.0 |
| Msa0106810 | MtrunA17_Chr7g0258011 | 35.065 | 154 | 82 | 6 | 17 | 153 | 183 | 335 | 7.94e-20 | 90.1 |
| Msa0106810 | MtrunA17_Chr1g0173841 | 36.691 | 139 | 78 | 5 | 17 | 146 | 222 | 359 | 2.37e-19 | 89.0 |
| Msa0106810 | MtrunA17_Chr4g0053341 | 34.437 | 151 | 89 | 4 | 5 | 146 | 69 | 218 | 4.00e-19 | 85.9 |
| Msa0106810 | MtrunA17_Chr2g0328921 | 35.252 | 139 | 80 | 5 | 17 | 146 | 145 | 282 | 2.44e-18 | 85.1 |
| Msa0106810 | MtrunA17_Chr8g0382121 | 31.757 | 148 | 90 | 5 | 7 | 143 | 109 | 256 | 4.06e-18 | 84.3 |
| Msa0106810 | MtrunA17_Chr2g0321291 | 35.374 | 147 | 83 | 5 | 10 | 146 | 133 | 277 | 6.28e-18 | 84.0 |
| Msa0106810 | MtrunA17_Chr4g0026521 | 34.014 | 147 | 85 | 5 | 10 | 146 | 118 | 262 | 3.13e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106810 | AT2G02080.1 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0106810 | AT2G02080.4 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0106810 | AT2G02080.5 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0106810 | AT2G02080.3 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0106810 | AT5G66730.1 | 48.232 | 396 | 158 | 11 | 4 | 368 | 42 | 421 | 8.40e-108 | 327 |
| Msa0106810 | AT2G02070.2 | 92.157 | 153 | 12 | 0 | 6 | 158 | 64 | 216 | 1.59e-106 | 327 |
| Msa0106810 | AT2G02070.1 | 92.157 | 153 | 12 | 0 | 6 | 158 | 64 | 216 | 1.59e-106 | 327 |
| Msa0106810 | AT2G02080.6 | 48.894 | 407 | 163 | 10 | 18 | 399 | 1 | 387 | 2.11e-106 | 321 |
| Msa0106810 | AT2G02080.2 | 48.894 | 407 | 163 | 10 | 18 | 399 | 1 | 387 | 2.11e-106 | 321 |
| Msa0106810 | AT1G14580.1 | 88.387 | 155 | 18 | 0 | 4 | 158 | 63 | 217 | 4.25e-106 | 321 |
| Msa0106810 | AT1G14580.2 | 88.387 | 155 | 18 | 0 | 4 | 158 | 63 | 217 | 4.25e-106 | 321 |
| Msa0106810 | AT1G14580.3 | 88.387 | 155 | 18 | 0 | 4 | 158 | 77 | 231 | 9.24e-106 | 321 |
| Msa0106810 | AT3G50700.1 | 86.275 | 153 | 21 | 0 | 4 | 156 | 44 | 196 | 2.75e-102 | 311 |
| Msa0106810 | AT1G55110.3 | 83.333 | 162 | 25 | 2 | 4 | 163 | 73 | 234 | 7.05e-101 | 307 |
| Msa0106810 | AT1G55110.1 | 83.333 | 162 | 25 | 2 | 4 | 163 | 73 | 234 | 7.05e-101 | 307 |
| Msa0106810 | AT1G55110.2 | 83.333 | 162 | 25 | 2 | 4 | 163 | 73 | 234 | 7.05e-101 | 307 |
| Msa0106810 | AT1G03840.1 | 83.007 | 153 | 26 | 0 | 4 | 156 | 51 | 203 | 5.92e-99 | 304 |
| Msa0106810 | AT3G13810.6 | 85.806 | 155 | 21 | 1 | 4 | 157 | 61 | 215 | 2.46e-98 | 302 |
| Msa0106810 | AT3G45260.2 | 79.762 | 168 | 29 | 2 | 4 | 166 | 49 | 216 | 3.09e-98 | 300 |
| Msa0106810 | AT3G45260.1 | 79.762 | 168 | 29 | 2 | 4 | 166 | 49 | 216 | 3.09e-98 | 300 |
| Msa0106810 | AT3G13810.5 | 85.806 | 155 | 21 | 1 | 4 | 157 | 75 | 229 | 3.33e-98 | 302 |
| Msa0106810 | AT1G03840.2 | 82.353 | 153 | 27 | 0 | 4 | 156 | 49 | 201 | 3.34e-98 | 302 |
| Msa0106810 | AT3G13810.4 | 85.806 | 155 | 21 | 1 | 4 | 157 | 80 | 234 | 4.31e-98 | 302 |
| Msa0106810 | AT3G13810.1 | 85.806 | 155 | 21 | 1 | 4 | 157 | 80 | 234 | 4.31e-98 | 302 |
| Msa0106810 | AT3G13810.3 | 85.714 | 154 | 21 | 1 | 5 | 157 | 68 | 221 | 2.52e-97 | 300 |
| Msa0106810 | AT3G13810.2 | 85.714 | 154 | 21 | 1 | 5 | 157 | 82 | 235 | 3.18e-97 | 300 |
| Msa0106810 | AT5G03150.1 | 74.595 | 185 | 38 | 3 | 4 | 183 | 63 | 243 | 3.09e-96 | 297 |
| Msa0106810 | AT5G44160.2 | 80.769 | 156 | 30 | 0 | 1 | 156 | 5 | 160 | 3.97e-96 | 294 |
| Msa0106810 | AT5G44160.1 | 82.353 | 153 | 27 | 0 | 4 | 156 | 47 | 199 | 7.08e-96 | 295 |
| Msa0106810 | AT4G02670.1 | 82.468 | 154 | 26 | 1 | 4 | 156 | 63 | 216 | 1.17e-95 | 292 |
| Msa0106810 | AT4G02670.2 | 82.468 | 154 | 26 | 1 | 4 | 156 | 65 | 218 | 1.26e-95 | 292 |
| Msa0106810 | AT5G60470.2 | 47.258 | 383 | 169 | 10 | 4 | 368 | 54 | 421 | 1.70e-95 | 293 |
| Msa0106810 | AT5G60470.3 | 47.258 | 383 | 169 | 10 | 4 | 368 | 50 | 417 | 2.38e-95 | 293 |
| Msa0106810 | AT5G60470.1 | 46.632 | 386 | 173 | 10 | 1 | 368 | 42 | 412 | 3.64e-95 | 292 |
| Msa0106810 | AT1G25250.1 | 59.877 | 162 | 56 | 3 | 3 | 161 | 19 | 174 | 6.59e-70 | 224 |
| Msa0106810 | AT1G25250.3 | 60.000 | 160 | 55 | 3 | 4 | 160 | 43 | 196 | 4.11e-69 | 223 |
| Msa0106810 | AT2G01940.1 | 60.000 | 160 | 60 | 3 | 4 | 159 | 54 | 213 | 1.05e-67 | 221 |
| Msa0106810 | AT1G68130.1 | 52.356 | 191 | 78 | 4 | 4 | 187 | 51 | 235 | 1.51e-67 | 220 |
| Msa0106810 | AT2G01940.3 | 59.006 | 161 | 61 | 4 | 4 | 159 | 54 | 214 | 4.03e-64 | 212 |
| Msa0106810 | AT1G25250.2 | 58.400 | 125 | 43 | 3 | 40 | 161 | 1 | 119 | 4.37e-47 | 163 |
| Msa0106810 | AT1G68130.2 | 50.323 | 155 | 64 | 4 | 40 | 187 | 1 | 149 | 1.60e-46 | 162 |
| Msa0106810 | AT2G01940.2 | 59.677 | 124 | 46 | 3 | 40 | 159 | 1 | 124 | 5.97e-46 | 162 |
| Msa0106810 | AT1G34370.3 | 33.987 | 153 | 87 | 3 | 8 | 146 | 19 | 171 | 8.17e-23 | 97.8 |
| Msa0106810 | AT1G34370.2 | 33.987 | 153 | 87 | 3 | 8 | 146 | 229 | 381 | 1.28e-22 | 100 |
| Msa0106810 | AT1G34370.1 | 33.987 | 153 | 87 | 3 | 8 | 146 | 229 | 381 | 1.28e-22 | 100 |
| Msa0106810 | AT5G22890.1 | 32.026 | 153 | 90 | 3 | 8 | 146 | 202 | 354 | 1.02e-21 | 96.3 |
| Msa0106810 | AT1G13290.1 | 36.667 | 150 | 81 | 6 | 17 | 154 | 95 | 242 | 3.28e-19 | 87.8 |
| Msa0106810 | AT1G51220.1 | 34.532 | 139 | 81 | 5 | 17 | 146 | 172 | 309 | 8.37e-19 | 87.4 |
| Msa0106810 | AT3G20880.1 | 35.252 | 139 | 80 | 5 | 17 | 146 | 250 | 387 | 9.82e-19 | 87.8 |
| Msa0106810 | AT3G57670.1 | 35.971 | 139 | 79 | 5 | 17 | 146 | 211 | 348 | 1.97e-18 | 86.7 |
| Msa0106810 | AT1G34790.1 | 36.000 | 150 | 84 | 6 | 7 | 146 | 129 | 276 | 7.73e-18 | 84.0 |
| Msa0106810 | AT1G08290.1 | 33.333 | 177 | 93 | 9 | 4 | 163 | 155 | 323 | 9.95e-18 | 84.0 |
Find 84 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATAAACCTTTCTCTT+TGG | 0.255380 | 1_3:-16552726 | None:intergenic |
| AAATAGTTGGGAGTTATTAA+TGG | 0.273423 | 1_3:-16555037 | None:intergenic |
| TGTTGTGTGATGAAATTAAA+TGG | 0.300865 | 1_3:-16555252 | None:intergenic |
| AACGCAAGATTTCACTAGTT+TGG | 0.305914 | 1_3:-16555158 | None:intergenic |
| TAATGGAAGTGTTGGTGATT+AGG | 0.308887 | 1_3:-16555020 | None:intergenic |
| ATTGATCATGATGGTAGTTT+TGG | 0.309546 | 1_3:-16555278 | None:intergenic |
| GTTTGTTGCCATTAGGCTCT+TGG | 0.316327 | 1_3:-16552592 | None:intergenic |
| GTATGTGAAGTGTGCCAAAA+AGG | 0.353724 | 1_3:+16552621 | Msa0106810:CDS |
| TAGTTTGGTTGCTGTCGTTT+TGG | 0.356154 | 1_3:-16555143 | None:intergenic |
| TCTGCAGCAACAAAGGTTAA+TGG | 0.357357 | 1_3:+16555579 | Msa0106810:CDS |
| GCAGAGAATAATGGAAATAT+TGG | 0.362372 | 1_3:+16555708 | Msa0106810:CDS |
| AGATAGGGCTTGCGCTTGTT+TGG | 0.373788 | 1_3:-16555434 | None:intergenic |
| CAAATCTGTTTGTTGCCATT+AGG | 0.375978 | 1_3:-16552599 | None:intergenic |
| TTTGTTGCCATTAGGCTCTT+GGG | 0.385028 | 1_3:-16552591 | None:intergenic |
| TACTAATATTTCGAAATAGT+TGG | 0.387081 | 1_3:-16555050 | None:intergenic |
| ACTAGTGAAATCTTGCGTTT+TGG | 0.390372 | 1_3:+16555162 | Msa0106810:CDS |
| TCTGAAAATTTCAACAATGA+AGG | 0.390896 | 1_3:+16555363 | Msa0106810:CDS |
| ACTAATATTTCGAAATAGTT+GGG | 0.395845 | 1_3:-16555049 | None:intergenic |
| TGGTGAACACATGTTGGTTC+TGG | 0.406411 | 1_3:-16552750 | None:intergenic |
| GGGTTTGAAGAGTTTGTTGT+GGG | 0.408008 | 1_3:-16555227 | None:intergenic |
| AGTGCTATCACTTCTGCATC+TGG | 0.408067 | 1_3:-16552564 | None:intergenic |
| AACTTGGAAGCAGAGAATAA+TGG | 0.409292 | 1_3:+16555699 | Msa0106810:CDS |
| TCTTCAATACTAAGAAGCTT+TGG | 0.417560 | 1_3:+16555543 | Msa0106810:CDS |
| AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 1_3:+16552871 | Msa0106810:CDS |
| TATTGAAGAGGAAGTATTGT+TGG | 0.431216 | 1_3:-16555529 | None:intergenic |
| CATGTTGTTGTTGTTGAGTT+CGG | 0.445589 | 1_3:-16555337 | None:intergenic |
| CTGAAAATTTCAACAATGAA+GGG | 0.449011 | 1_3:+16555364 | Msa0106810:CDS |
| GAAGTGTTGGTGATTAGGTT+TGG | 0.449857 | 1_3:-16555015 | None:intergenic |
| GGAAGTATTGTTGGTGGTGG+TGG | 0.452654 | 1_3:-16555520 | None:intergenic |
| TTCTAAGACTTGTGGTACTA+AGG | 0.456129 | 1_3:+16552902 | Msa0106810:CDS |
| GCTGACATGTGAGGAGAGAT+AGG | 0.463590 | 1_3:-16555450 | None:intergenic |
| GTGTTCACCATGACCCTTCA+AGG | 0.470912 | 1_3:+16552763 | Msa0106810:CDS |
| TTGAGCTAGTGCATCACAAA+AGG | 0.483810 | 1_3:-16554971 | None:intergenic |
| ACTATCTCCCAAGAGCCTAA+TGG | 0.486645 | 1_3:+16552584 | Msa0106810:CDS |
| GGAGTTATTAATGGAAGTGT+TGG | 0.488921 | 1_3:-16555028 | None:intergenic |
| AATGGAAATATTGGTGGTGG+AGG | 0.493890 | 1_3:+16555717 | Msa0106810:CDS |
| GAAGAGGACACAATTTGCCT+TGG | 0.500777 | 1_3:+16552676 | Msa0106810:CDS |
| CGGACAATGATATTAATCCT+TGG | 0.509290 | 1_3:-16555317 | None:intergenic |
| TTGTTGAGGAATTTGAGATA+AGG | 0.512984 | 1_3:-16555100 | None:intergenic |
| AATAATGGAAATATTGGTGG+TGG | 0.516109 | 1_3:+16555714 | Msa0106810:CDS |
| TAACAAAGAGCCAAAGAGAA+AGG | 0.517289 | 1_3:+16552716 | Msa0106810:CDS |
| ATTAATCCTTGGAATGGTTG+TGG | 0.522106 | 1_3:-16555306 | None:intergenic |
| GTTTGAAGAGTTTGTTGTGG+GGG | 0.522772 | 1_3:-16555225 | None:intergenic |
| AGGGCACTTGGTGATCTCAC+TGG | 0.527339 | 1_3:+16552783 | Msa0106810:CDS |
| CATGACCCTTCAAGGGCACT+TGG | 0.527782 | 1_3:+16552771 | Msa0106810:CDS |
| AGAAACATGAATGGAGGAGT+TGG | 0.532530 | 1_3:+16555654 | Msa0106810:CDS |
| GTGGTTGTGATTGATCATGA+TGG | 0.533883 | 1_3:-16555287 | None:intergenic |
| AAAGCTTCTTAGTATTGAAG+AGG | 0.536903 | 1_3:-16555541 | None:intergenic |
| AATGATATTAATCCTTGGAA+TGG | 0.541968 | 1_3:-16555312 | None:intergenic |
| CAACATATCTCTTCCATCCA+TGG | 0.544090 | 1_3:+16555120 | Msa0106810:CDS |
| GAGAATAATGGAAATATTGG+TGG | 0.544890 | 1_3:+16555711 | Msa0106810:CDS |
| AAGGTTAATGGTGGTGGTGA+TGG | 0.546808 | 1_3:+16555591 | Msa0106810:CDS |
| ATTAACCTTTGTTGCTGCAG+AGG | 0.549390 | 1_3:-16555577 | None:intergenic |
| TTCTTCCTCTGCAGCAACAA+AGG | 0.557640 | 1_3:+16555572 | Msa0106810:CDS |
| AGATCACCAAGTGCCCTTGA+AGG | 0.560455 | 1_3:-16552777 | None:intergenic |
| ACTGTGGTACTCTCTTCTCC+AGG | 0.561759 | 1_3:+16552937 | Msa0106810:CDS |
| AGAGGAAGTATTGTTGGTGG+TGG | 0.562650 | 1_3:-16555523 | None:intergenic |
| ATAGTTATGAGAAACATGAA+TGG | 0.565754 | 1_3:+16555645 | Msa0106810:CDS |
| ATGGAAATATTGGTGGTGGA+GGG | 0.575851 | 1_3:+16555718 | Msa0106810:CDS |
| CAAGTGCCCTTGAAGGGTCA+TGG | 0.580343 | 1_3:-16552770 | None:intergenic |
| TGTGATGAAATTAAATGGAG+GGG | 0.581041 | 1_3:-16555247 | None:intergenic |
| TGAAGAGGAAGTATTGTTGG+TGG | 0.581655 | 1_3:-16555526 | None:intergenic |
| GTGTGATGAAATTAAATGGA+GGG | 0.582917 | 1_3:-16555248 | None:intergenic |
| GTTATGAGAAACATGAATGG+AGG | 0.584520 | 1_3:+16555648 | Msa0106810:CDS |
| GATCACCAAGTGCCCTTGAA+GGG | 0.585984 | 1_3:-16552776 | None:intergenic |
| AAGTCAACGTAATTTCAACT+TGG | 0.588729 | 1_3:+16555683 | Msa0106810:CDS |
| GCAACAAAGGTTAATGGTGG+TGG | 0.590964 | 1_3:+16555585 | Msa0106810:CDS |
| AGGAATTTGAGATAAGGCTA+AGG | 0.591803 | 1_3:-16555094 | None:intergenic |
| AGACAGTTTCATCACACATA+GGG | 0.594778 | 1_3:+16554948 | Msa0106810:CDS |
| TTGGTGATTAGGTTTGGTTG+TGG | 0.594792 | 1_3:-16555009 | None:intergenic |
| GGGGTTTGAAGAGTTTGTTG+TGG | 0.595591 | 1_3:-16555228 | None:intergenic |
| GAGACAGTTTCATCACACAT+AGG | 0.601074 | 1_3:+16554947 | Msa0106810:CDS |
| CTGACATGTGAGGAGAGATA+GGG | 0.611438 | 1_3:-16555449 | None:intergenic |
| TCACAACCACAACCATTCCA+AGG | 0.613425 | 1_3:+16555300 | Msa0106810:CDS |
| AAAGCTCATTCTAAGACTTG+TGG | 0.613886 | 1_3:+16552894 | Msa0106810:CDS |
| TGTTCACCATGACCCTTCAA+GGG | 0.614167 | 1_3:+16552764 | Msa0106810:CDS |
| AATTTACAACTACATAGAAG+AGG | 0.622328 | 1_3:+16552660 | Msa0106810:CDS |
| GGTTTGAAGAGTTTGTTGTG+GGG | 0.624353 | 1_3:-16555226 | None:intergenic |
| TGTGTGATGAAATTAAATGG+AGG | 0.670340 | 1_3:-16555249 | None:intergenic |
| GCAGCAACAAAGGTTAATGG+TGG | 0.676561 | 1_3:+16555582 | Msa0106810:CDS |
| ATGGAAGAGATATGTTGTTG+AGG | 0.678439 | 1_3:-16555114 | None:intergenic |
| GGGTCATGGTGAACACATGT+TGG | 0.698022 | 1_3:-16552756 | None:intergenic |
| AAAGCTGTTGCTGACATGTG+AGG | 0.698667 | 1_3:-16555459 | None:intergenic |
| AAGGAGTATAGATGTGACTG+TGG | 0.709247 | 1_3:+16552921 | Msa0106810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATTATTTATTTTTT+TGG | + | chr1_3:16553572-16553591 | Msa0106810:intron | 0.0% |
| !! | TAAAAAAAAATAAAAACACA+CGG | + | chr1_3:16553523-16553542 | Msa0106810:intron | 10.0% |
| !!! | ATAATTTTATCTTTTGTTTA+GGG | - | chr1_3:16553560-16553579 | None:intergenic | 10.0% |
| !!! | AATAATTTTATCTTTTGTTT+AGG | - | chr1_3:16553561-16553580 | None:intergenic | 10.0% |
| !! | AAAATGTTAATGATTAATTT+GGG | - | chr1_3:16553874-16553893 | None:intergenic | 10.0% |
| !! | AAAAATGTTAATGATTAATT+TGG | - | chr1_3:16553875-16553894 | None:intergenic | 10.0% |
| !!! | ATCATTAACATTTTTATTTT+TGG | + | chr1_3:16553880-16553899 | Msa0106810:intron | 10.0% |
| !!! | TCATTAACATTTTTATTTTT+GGG | + | chr1_3:16553881-16553900 | Msa0106810:intron | 10.0% |
| !!! | TTTATATTTGAAGCAAAAAA+AGG | + | chr1_3:16553243-16553262 | Msa0106810:intron | 15.0% |
| !! | ACATAATCTTAATCAAAATA+TGG | - | chr1_3:16553392-16553411 | None:intergenic | 15.0% |
| !! | ACTAATAATTTCTTAATTCA+TGG | - | chr1_3:16553709-16553728 | None:intergenic | 15.0% |
| !!! | TACATTTTTAATTGAATTGA+TGG | + | chr1_3:16554145-16554164 | Msa0106810:intron | 15.0% |
| !!! | TTTTTTGCCATTAAAAAAAA+TGG | + | chr1_3:16554520-16554539 | Msa0106810:intron | 15.0% |
| !!! | TTTTCATTTTCTATTGAGTT+TGG | + | chr1_3:16553359-16553378 | Msa0106810:intron | 20.0% |
| !! | AATTAAAAATGTACCAAAAG+AGG | - | chr1_3:16554138-16554157 | None:intergenic | 20.0% |
| !! | GATCAAATAATTCAAATTTC+GGG | - | chr1_3:16554417-16554436 | None:intergenic | 20.0% |
| !! | GGATCAAATAATTCAAATTT+CGG | - | chr1_3:16554418-16554437 | None:intergenic | 20.0% |
| !! | CAAGTATATAGAAATAACAT+CGG | - | chr1_3:16554548-16554567 | None:intergenic | 20.0% |
| !! | TGGTAACAAAAAAAAAAAAG+GGG | - | chr1_3:16554749-16554768 | None:intergenic | 20.0% |
| !! | GTGGTAACAAAAAAAAAAAA+GGG | - | chr1_3:16554750-16554769 | None:intergenic | 20.0% |
| !! | AGTGGTAACAAAAAAAAAAA+AGG | - | chr1_3:16554751-16554770 | None:intergenic | 20.0% |
| !! | ACTAATATTTCGAAATAGTT+GGG | - | chr1_3:16555052-16555071 | None:intergenic | 20.0% |
| !! | TACTAATATTTCGAAATAGT+TGG | - | chr1_3:16555053-16555072 | None:intergenic | 20.0% |
| ! | AATTTACAACTACATAGAAG+AGG | + | chr1_3:16552660-16552679 | Msa0106810:CDS | 25.0% |
| !!! | AAACACTATTTTAGAAAGCA+TGG | + | chr1_3:16552813-16552832 | Msa0106810:CDS | 25.0% |
| !!! | TTTATGTATAGTTGATAGCA+TGG | + | chr1_3:16553040-16553059 | Msa0106810:intron | 25.0% |
| !!! | ATGGTTTTAAATTACGATTG+TGG | + | chr1_3:16553059-16553078 | Msa0106810:intron | 25.0% |
| ! | AAAGGAATGATTGTTTGATT+TGG | + | chr1_3:16553261-16553280 | Msa0106810:intron | 25.0% |
| !!! | TTGATTTGGTTTAGTTCATT+TGG | + | chr1_3:16553275-16553294 | Msa0106810:intron | 25.0% |
| !! | AATAGGGCTTATTAGAATTT+TGG | + | chr1_3:16553306-16553325 | Msa0106810:intron | 25.0% |
| !!! | TAGAAAATGAAAAGCATCTT+AGG | - | chr1_3:16553352-16553371 | None:intergenic | 25.0% |
| ! | TTAATTGCTTTCATTTCACT+TGG | - | chr1_3:16553474-16553493 | None:intergenic | 25.0% |
| !! | TTTTCAAAGATTATTCACGT+GGG | - | chr1_3:16553503-16553522 | None:intergenic | 25.0% |
| !! | ATTTTCAAAGATTATTCACG+TGG | - | chr1_3:16553504-16553523 | None:intergenic | 25.0% |
| ! | AAAAAAATAAAAACACACGG+AGG | + | chr1_3:16553526-16553545 | Msa0106810:intron | 25.0% |
| !! | ACATTTCTATCATTTTACCT+TGG | + | chr1_3:16553624-16553643 | Msa0106810:intron | 25.0% |
| ! | TATGCATAACATCATGAATA+TGG | - | chr1_3:16553667-16553686 | None:intergenic | 25.0% |
| ! | ATATTCATGATGTTATGCAT+AGG | + | chr1_3:16553666-16553685 | Msa0106810:intron | 25.0% |
| !! | AGTTCTTCATAATTTTCTCA+CGG | + | chr1_3:16553821-16553840 | Msa0106810:intron | 25.0% |
| ! | TCTCTAATTCATTATATCAG+AGG | + | chr1_3:16553913-16553932 | Msa0106810:intron | 25.0% |
| ! | AAAAGGAAATAGTACAAACA+AGG | - | chr1_3:16554115-16554134 | None:intergenic | 25.0% |
| ! | CTTTCTTTGAGTAATTTAGA+AGG | - | chr1_3:16554278-16554297 | None:intergenic | 25.0% |
| ! | TGATTCAAAATTGTTGAATG+AGG | - | chr1_3:16554439-16554458 | None:intergenic | 25.0% |
| !! | GTATATCATGATAAGTATTG+CGG | - | chr1_3:16554571-16554590 | None:intergenic | 25.0% |
| ! | AATGATCGATCAATTAACAT+TGG | - | chr1_3:16554593-16554612 | None:intergenic | 25.0% |
| ! | CAATGCAGTTACAAAAATTA+AGG | - | chr1_3:16554711-16554730 | None:intergenic | 25.0% |
| ! | AAACAATGCTTGAAAAATGA+AGG | + | chr1_3:16554858-16554877 | Msa0106810:intron | 25.0% |
| ! | AAATAGTTGGGAGTTATTAA+TGG | - | chr1_3:16555040-16555059 | None:intergenic | 25.0% |
| ! | TGTTGTGTGATGAAATTAAA+TGG | - | chr1_3:16555255-16555274 | None:intergenic | 25.0% |
| ! | AATGATATTAATCCTTGGAA+TGG | - | chr1_3:16555315-16555334 | None:intergenic | 25.0% |
| ! | TCTGAAAATTTCAACAATGA+AGG | + | chr1_3:16555363-16555382 | Msa0106810:CDS | 25.0% |
| ! | CTGAAAATTTCAACAATGAA+GGG | + | chr1_3:16555364-16555383 | Msa0106810:CDS | 25.0% |
| ! | ATAGTTATGAGAAACATGAA+TGG | + | chr1_3:16555645-16555664 | Msa0106810:CDS | 25.0% |
| CACAAATAAACCTTTCTCTT+TGG | - | chr1_3:16552729-16552748 | None:intergenic | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | + | chr1_3:16552871-16552890 | Msa0106810:CDS | 30.0% | |
| ! | ACGTATAAGTTGTTATTACC+TGG | - | chr1_3:16552958-16552977 | None:intergenic | 30.0% |
| TCGCAATAGAAAAATTGGAA+CGG | - | chr1_3:16552988-16553007 | None:intergenic | 30.0% | |
| AGAACTCGCAATAGAAAAAT+TGG | - | chr1_3:16552993-16553012 | None:intergenic | 30.0% | |
| ACCAGAAAATGTGATTGATA+TGG | + | chr1_3:16553118-16553137 | Msa0106810:intron | 30.0% | |
| ! | ACCATATCAATCACATTTTC+TGG | - | chr1_3:16553122-16553141 | None:intergenic | 30.0% |
| TCGCAGTTATAATCGAAATT+TGG | - | chr1_3:16553188-16553207 | None:intergenic | 30.0% | |
| !!! | CGAAACAATTTTTAAGACCA+TGG | + | chr1_3:16553205-16553224 | Msa0106810:intron | 30.0% |
| !!! | CAATTTTTAAGACCATGGAA+AGG | + | chr1_3:16553210-16553229 | Msa0106810:intron | 30.0% |
| AAAATTTCATCTCCTTTCCA+TGG | - | chr1_3:16553225-16553244 | None:intergenic | 30.0% | |
| ! | GTTTAGTTCATTTGGTCATT+TGG | + | chr1_3:16553283-16553302 | Msa0106810:intron | 30.0% |
| ! | TTCATTTGGTCATTTGGAAT+AGG | + | chr1_3:16553289-16553308 | Msa0106810:intron | 30.0% |
| ! | TCATTTGGTCATTTGGAATA+GGG | + | chr1_3:16553290-16553309 | Msa0106810:intron | 30.0% |
| TTTCAAAGATTATTCACGTG+GGG | - | chr1_3:16553502-16553521 | None:intergenic | 30.0% | |
| CATGAATATGGATCAAACTA+GGG | - | chr1_3:16553655-16553674 | None:intergenic | 30.0% | |
| TCATGAATATGGATCAAACT+AGG | - | chr1_3:16553656-16553675 | None:intergenic | 30.0% | |
| !! | AAAATAAGAAGCACCTACAA+AGG | - | chr1_3:16554042-16554061 | None:intergenic | 30.0% |
| !!! | TCTTATTTTGTGATAACGTC+AGG | + | chr1_3:16554053-16554072 | Msa0106810:intron | 30.0% |
| !!! | CTTATTTTGTGATAACGTCA+GGG | + | chr1_3:16554054-16554073 | Msa0106810:intron | 30.0% |
| TAGTACAAACAAGGAATAGA+GGG | - | chr1_3:16554106-16554125 | None:intergenic | 30.0% | |
| ATAGTACAAACAAGGAATAG+AGG | - | chr1_3:16554107-16554126 | None:intergenic | 30.0% | |
| ! | ACTATTTCCTTTTCCTCTTT+TGG | + | chr1_3:16554122-16554141 | Msa0106810:intron | 30.0% |
| AAATGTACCAAAAGAGGAAA+AGG | - | chr1_3:16554132-16554151 | None:intergenic | 30.0% | |
| AACATGACATTACTTACACA+CGG | + | chr1_3:16554227-16554246 | Msa0106810:intron | 30.0% | |
| TCACCTTTAGTTAGAATTGT+TGG | + | chr1_3:16554337-16554356 | Msa0106810:intron | 30.0% | |
| CACCTTTAGTTAGAATTGTT+GGG | + | chr1_3:16554338-16554357 | Msa0106810:intron | 30.0% | |
| TGTTAAAATGAAGATCGTCA+GGG | - | chr1_3:16554467-16554486 | None:intergenic | 30.0% | |
| ATGTTAAAATGAAGATCGTC+AGG | - | chr1_3:16554468-16554487 | None:intergenic | 30.0% | |
| AAAATGTTGTATACAGCGAA+AGG | + | chr1_3:16554643-16554662 | Msa0106810:intron | 30.0% | |
| ! | ATTTTTGTAACTGCATTGTG+TGG | + | chr1_3:16554713-16554732 | Msa0106810:intron | 30.0% |
| !!! | TTTTTTGTTACCACTACACT+TGG | + | chr1_3:16554756-16554775 | Msa0106810:intron | 30.0% |
| AATGCTTGAAAAATGAAGGT+AGG | + | chr1_3:16554862-16554881 | Msa0106810:intron | 30.0% | |
| ! | TTGTTGAGGAATTTGAGATA+AGG | - | chr1_3:16555103-16555122 | None:intergenic | 30.0% |
| TGTGATGAAATTAAATGGAG+GGG | - | chr1_3:16555250-16555269 | None:intergenic | 30.0% | |
| GTGTGATGAAATTAAATGGA+GGG | - | chr1_3:16555251-16555270 | None:intergenic | 30.0% | |
| TGTGTGATGAAATTAAATGG+AGG | - | chr1_3:16555252-16555271 | None:intergenic | 30.0% | |
| ! | ATTGATCATGATGGTAGTTT+TGG | - | chr1_3:16555281-16555300 | None:intergenic | 30.0% |
| CTTCAAAAAGCTTCTCAAAT+GGG | + | chr1_3:16555483-16555502 | Msa0106810:CDS | 30.0% | |
| !! | TATTGAAGAGGAAGTATTGT+TGG | - | chr1_3:16555532-16555551 | None:intergenic | 30.0% |
| ! | AAAGCTTCTTAGTATTGAAG+AGG | - | chr1_3:16555544-16555563 | None:intergenic | 30.0% |
| TCTTCAATACTAAGAAGCTT+TGG | + | chr1_3:16555543-16555562 | Msa0106810:CDS | 30.0% | |
| AAGTCAACGTAATTTCAACT+TGG | + | chr1_3:16555683-16555702 | Msa0106810:CDS | 30.0% | |
| ! | GCAGAGAATAATGGAAATAT+TGG | + | chr1_3:16555708-16555727 | Msa0106810:CDS | 30.0% |
| ! | GAGAATAATGGAAATATTGG+TGG | + | chr1_3:16555711-16555730 | Msa0106810:CDS | 30.0% |
| ! | AATAATGGAAATATTGGTGG+TGG | + | chr1_3:16555714-16555733 | Msa0106810:CDS | 30.0% |
| ! | CAAATCTGTTTGTTGCCATT+AGG | - | chr1_3:16552602-16552621 | None:intergenic | 35.0% |
| TATGTGAAGTGTGCCAAAAA+GGG | + | chr1_3:16552622-16552641 | Msa0106810:CDS | 35.0% | |
| ! | GTTGTAAATTTTGCTCCCTT+TGG | - | chr1_3:16552650-16552669 | None:intergenic | 35.0% |
| TAACAAAGAGCCAAAGAGAA+AGG | + | chr1_3:16552716-16552735 | Msa0106810:CDS | 35.0% | |
| ! | GAAAGCATGGTGAGAAAAAA+TGG | + | chr1_3:16552826-16552845 | Msa0106810:CDS | 35.0% |
| !! | AAAGCTCATTCTAAGACTTG+TGG | + | chr1_3:16552894-16552913 | Msa0106810:CDS | 35.0% |
| !! | TTCTAAGACTTGTGGTACTA+AGG | + | chr1_3:16552902-16552921 | Msa0106810:CDS | 35.0% |
| !!! | ATTAGAATTTTGGTGCCCAT+AGG | + | chr1_3:16553316-16553335 | Msa0106810:intron | 35.0% |
| !!! | TTAGAATTTTGGTGCCCATA+GGG | + | chr1_3:16553317-16553336 | Msa0106810:intron | 35.0% |
| ! | ATCTTGCCCTCATATTTTGT+AGG | + | chr1_3:16553444-16553463 | Msa0106810:intron | 35.0% |
| ! | TCTTGCCCTCATATTTTGTA+GGG | + | chr1_3:16553445-16553464 | Msa0106810:intron | 35.0% |
| TTCAAAGATTATTCACGTGG+GGG | - | chr1_3:16553501-16553520 | None:intergenic | 35.0% | |
| ! | ATTTGGGTTTATGTTATGCG+AGG | - | chr1_3:16553858-16553877 | None:intergenic | 35.0% |
| !! | CAGAGGAACTAATTTGTTGT+CGG | + | chr1_3:16553930-16553949 | Msa0106810:intron | 35.0% |
| GTGGATCAATTTATAGTCCT+CGG | - | chr1_3:16553965-16553984 | None:intergenic | 35.0% | |
| AGAGGGGAAAAGAAAAGATA+GGG | - | chr1_3:16554089-16554108 | None:intergenic | 35.0% | |
| TAGAGGGGAAAAGAAAAGAT+AGG | - | chr1_3:16554090-16554109 | None:intergenic | 35.0% | |
| AGTACAAACAAGGAATAGAG+GGG | - | chr1_3:16554105-16554124 | None:intergenic | 35.0% | |
| ! | ATTGTGAGGATGGACAATTT+TGG | - | chr1_3:16554308-16554327 | None:intergenic | 35.0% |
| TCTAACTAAAGGTGAACATG+TGG | - | chr1_3:16554332-16554351 | None:intergenic | 35.0% | |
| CACCCAACAATTCTAACTAA+AGG | - | chr1_3:16554343-16554362 | None:intergenic | 35.0% | |
| GCAAAAAAACCGAGTAGAAT+GGG | - | chr1_3:16554508-16554527 | None:intergenic | 35.0% | |
| !!! | ATCGGCGCCATTTTTTTTAA+TGG | - | chr1_3:16554530-16554549 | None:intergenic | 35.0% |
| AGACAGTTTCATCACACATA+GGG | + | chr1_3:16554948-16554967 | Msa0106810:CDS | 35.0% | |
| !! | TAATGGAAGTGTTGGTGATT+AGG | - | chr1_3:16555023-16555042 | None:intergenic | 35.0% |
| ! | GGAGTTATTAATGGAAGTGT+TGG | - | chr1_3:16555031-16555050 | None:intergenic | 35.0% |
| ! | AGGAATTTGAGATAAGGCTA+AGG | - | chr1_3:16555097-16555116 | None:intergenic | 35.0% |
| ATGGAAGAGATATGTTGTTG+AGG | - | chr1_3:16555117-16555136 | None:intergenic | 35.0% | |
| AACGCAAGATTTCACTAGTT+TGG | - | chr1_3:16555161-16555180 | None:intergenic | 35.0% | |
| ! | ACTAGTGAAATCTTGCGTTT+TGG | + | chr1_3:16555162-16555181 | Msa0106810:CDS | 35.0% |
| ATTAATCCTTGGAATGGTTG+TGG | - | chr1_3:16555309-16555328 | None:intergenic | 35.0% | |
| CGGACAATGATATTAATCCT+TGG | - | chr1_3:16555320-16555339 | None:intergenic | 35.0% | |
| ! | CATGTTGTTGTTGTTGAGTT+CGG | - | chr1_3:16555340-16555359 | None:intergenic | 35.0% |
| GCTTCAAAAAGCTTCTCAAA+TGG | + | chr1_3:16555482-16555501 | Msa0106810:CDS | 35.0% | |
| ! | ACTAGAGATTTTCTTGGAGT+TGG | + | chr1_3:16555618-16555637 | Msa0106810:CDS | 35.0% |
| GTTATGAGAAACATGAATGG+AGG | + | chr1_3:16555648-16555667 | Msa0106810:CDS | 35.0% | |
| AACTTGGAAGCAGAGAATAA+TGG | + | chr1_3:16555699-16555718 | Msa0106810:CDS | 35.0% | |
| TTTGTTGCCATTAGGCTCTT+GGG | - | chr1_3:16552594-16552613 | None:intergenic | 40.0% | |
| GTATGTGAAGTGTGCCAAAA+AGG | + | chr1_3:16552621-16552640 | Msa0106810:CDS | 40.0% | |
| !! | CTCTTTTGCTTTAGCTTCCA+AGG | - | chr1_3:16552696-16552715 | None:intergenic | 40.0% |
| ! | AAGGAGTATAGATGTGACTG+TGG | + | chr1_3:16552921-16552940 | Msa0106810:CDS | 40.0% |
| TATTGCGAGTTCTTTCGCTA+TGG | + | chr1_3:16553000-16553019 | Msa0106810:intron | 40.0% | |
| ATATGAGGGCAAGATGACAA+AGG | - | chr1_3:16553439-16553458 | None:intergenic | 40.0% | |
| GGTCACCCTACAAAATATGA+GGG | - | chr1_3:16553453-16553472 | None:intergenic | 40.0% | |
| TGGTCACCCTACAAAATATG+AGG | - | chr1_3:16553454-16553473 | None:intergenic | 40.0% | |
| TCAAAGATTATTCACGTGGG+GGG | - | chr1_3:16553500-16553519 | None:intergenic | 40.0% | |
| ! | ATCAAACTAGGGTGTTTCCA+AGG | - | chr1_3:16553644-16553663 | None:intergenic | 40.0% |
| CAACTCACTAGAGAACAATG+TGG | - | chr1_3:16553984-16554003 | None:intergenic | 40.0% | |
| CACATTGTTCTCTAGTGAGT+TGG | + | chr1_3:16553982-16554001 | Msa0106810:intron | 40.0% | |
| GTTGTGATAACACAACGTGT+AGG | - | chr1_3:16554186-16554205 | None:intergenic | 40.0% | |
| !! | GAGGATGGACAATTTTGGTA+AGG | - | chr1_3:16554303-16554322 | None:intergenic | 40.0% |
| AACATGTGGTATTGTGAGGA+TGG | - | chr1_3:16554318-16554337 | None:intergenic | 40.0% | |
| ATTGTTGGGTGATGATTGAG+TGG | + | chr1_3:16554352-16554371 | Msa0106810:intron | 40.0% | |
| GTACGATTACCCATTCTACT+CGG | + | chr1_3:16554496-16554515 | Msa0106810:intron | 40.0% | |
| GGCAAAAAAACCGAGTAGAA+TGG | - | chr1_3:16554509-16554528 | None:intergenic | 40.0% | |
| TGTTTCACGAAACATCTCGA+TGG | + | chr1_3:16554667-16554686 | Msa0106810:intron | 40.0% | |
| GTTTCACGAAACATCTCGAT+GGG | + | chr1_3:16554668-16554687 | Msa0106810:intron | 40.0% | |
| TTGTAACTGCATTGTGTGGT+TGG | + | chr1_3:16554717-16554736 | Msa0106810:intron | 40.0% | |
| GAGACAGTTTCATCACACAT+AGG | + | chr1_3:16554947-16554966 | Msa0106810:CDS | 40.0% | |
| TTGAGCTAGTGCATCACAAA+AGG | - | chr1_3:16554974-16554993 | None:intergenic | 40.0% | |
| ! | TTGGTGATTAGGTTTGGTTG+TGG | - | chr1_3:16555012-16555031 | None:intergenic | 40.0% |
| !! | GAAGTGTTGGTGATTAGGTT+TGG | - | chr1_3:16555018-16555037 | None:intergenic | 40.0% |
| CAACATATCTCTTCCATCCA+TGG | + | chr1_3:16555120-16555139 | Msa0106810:CDS | 40.0% | |
| !! | TAGTTTGGTTGCTGTCGTTT+TGG | - | chr1_3:16555146-16555165 | None:intergenic | 40.0% |
| !! | GTTTGAAGAGTTTGTTGTGG+GGG | - | chr1_3:16555228-16555247 | None:intergenic | 40.0% |
| !! | GGTTTGAAGAGTTTGTTGTG+GGG | - | chr1_3:16555229-16555248 | None:intergenic | 40.0% |
| !! | GGGTTTGAAGAGTTTGTTGT+GGG | - | chr1_3:16555230-16555249 | None:intergenic | 40.0% |
| GTGGTTGTGATTGATCATGA+TGG | - | chr1_3:16555290-16555309 | None:intergenic | 40.0% | |
| !! | TGAAGAGGAAGTATTGTTGG+TGG | - | chr1_3:16555529-16555548 | None:intergenic | 40.0% |
| ATTAACCTTTGTTGCTGCAG+AGG | - | chr1_3:16555580-16555599 | None:intergenic | 40.0% | |
| TCTGCAGCAACAAAGGTTAA+TGG | + | chr1_3:16555579-16555598 | Msa0106810:CDS | 40.0% | |
| ! | GGACTCACTAGAGATTTTCT+TGG | + | chr1_3:16555612-16555631 | Msa0106810:CDS | 40.0% |
| AGAAACATGAATGGAGGAGT+TGG | + | chr1_3:16555654-16555673 | Msa0106810:CDS | 40.0% | |
| !! | AATGGAAATATTGGTGGTGG+AGG | + | chr1_3:16555717-16555736 | Msa0106810:CDS | 40.0% |
| !! | ATGGAAATATTGGTGGTGGA+GGG | + | chr1_3:16555718-16555737 | Msa0106810:CDS | 40.0% |
| AGTGCTATCACTTCTGCATC+TGG | - | chr1_3:16552567-16552586 | None:intergenic | 45.0% | |
| ACTATCTCCCAAGAGCCTAA+TGG | + | chr1_3:16552584-16552603 | Msa0106810:CDS | 45.0% | |
| ! | GTTTGTTGCCATTAGGCTCT+TGG | - | chr1_3:16552595-16552614 | None:intergenic | 45.0% |
| TGTGCCAAAAAGGGTTCCAA+AGG | + | chr1_3:16552631-16552650 | Msa0106810:CDS | 45.0% | |
| GTGCCAAAAAGGGTTCCAAA+GGG | + | chr1_3:16552632-16552651 | Msa0106810:CDS | 45.0% | |
| GAAGAGGACACAATTTGCCT+TGG | + | chr1_3:16552676-16552695 | Msa0106810:CDS | 45.0% | |
| !! | TGGTGAACACATGTTGGTTC+TGG | - | chr1_3:16552753-16552772 | None:intergenic | 45.0% |
| TGTTCACCATGACCCTTCAA+GGG | + | chr1_3:16552764-16552783 | Msa0106810:CDS | 45.0% | |
| GATGCTCTACAACAGTTGCA+CGG | - | chr1_3:16553166-16553185 | None:intergenic | 45.0% | |
| ! | TTAGGCCTTTTCCACCCTAT+GGG | - | chr1_3:16553334-16553353 | None:intergenic | 45.0% |
| GTTGTCGGTATGAAAATCCG+AGG | + | chr1_3:16553945-16553964 | Msa0106810:intron | 45.0% | |
| TCAGTAACGTGCTCCTTTGT+AGG | + | chr1_3:16554026-16554045 | Msa0106810:intron | 45.0% | |
| GGTGAACATGTGGTATTGTG+AGG | - | chr1_3:16554322-16554341 | None:intergenic | 45.0% | |
| TAACTGCATTGTGTGGTTGG+TGG | + | chr1_3:16554720-16554739 | Msa0106810:intron | 45.0% | |
| AACTGCATTGTGTGGTTGGT+GGG | + | chr1_3:16554721-16554740 | Msa0106810:intron | 45.0% | |
| ! | TACCACTACACTTGGCCTTT+CGG | + | chr1_3:16554764-16554783 | Msa0106810:intron | 45.0% |
| !! | GGGGTTTGAAGAGTTTGTTG+TGG | - | chr1_3:16555231-16555250 | None:intergenic | 45.0% |
| TCACAACCACAACCATTCCA+AGG | + | chr1_3:16555300-16555319 | Msa0106810:CDS | 45.0% | |
| CTGACATGTGAGGAGAGATA+GGG | - | chr1_3:16555452-16555471 | None:intergenic | 45.0% | |
| AAAGCTGTTGCTGACATGTG+AGG | - | chr1_3:16555462-16555481 | None:intergenic | 45.0% | |
| !! | AGAGGAAGTATTGTTGGTGG+TGG | - | chr1_3:16555526-16555545 | None:intergenic | 45.0% |
| TTCTTCCTCTGCAGCAACAA+AGG | + | chr1_3:16555572-16555591 | Msa0106810:CDS | 45.0% | |
| GCAGCAACAAAGGTTAATGG+TGG | + | chr1_3:16555582-16555601 | Msa0106810:CDS | 45.0% | |
| GCAACAAAGGTTAATGGTGG+TGG | + | chr1_3:16555585-16555604 | Msa0106810:CDS | 45.0% | |
| !! | AAGGTTAATGGTGGTGGTGA+TGG | + | chr1_3:16555591-16555610 | Msa0106810:CDS | 45.0% |
| !! | CTTAATAATATATATTATAA+TGG | - | chr1_3:16553773-16553792 | None:intergenic | 5.0% |
| !!! | GCTCCCTTTGGAACCCTTTT+TGG | - | chr1_3:16552638-16552657 | None:intergenic | 50.0% |
| GGGTCATGGTGAACACATGT+TGG | - | chr1_3:16552759-16552778 | None:intergenic | 50.0% | |
| GTGTTCACCATGACCCTTCA+AGG | + | chr1_3:16552763-16552782 | Msa0106810:CDS | 50.0% | |
| GATCACCAAGTGCCCTTGAA+GGG | - | chr1_3:16552779-16552798 | None:intergenic | 50.0% | |
| AGATCACCAAGTGCCCTTGA+AGG | - | chr1_3:16552780-16552799 | None:intergenic | 50.0% | |
| ACTGTGGTACTCTCTTCTCC+AGG | + | chr1_3:16552937-16552956 | Msa0106810:CDS | 50.0% | |
| !!! | GAATTTTGGTGCCCATAGGG+TGG | + | chr1_3:16553320-16553339 | Msa0106810:intron | 50.0% |
| ! | CTTAGGCCTTTTCCACCCTA+TGG | - | chr1_3:16553335-16553354 | None:intergenic | 50.0% |
| ! | ACCACTACACTTGGCCTTTC+GGG | + | chr1_3:16554765-16554784 | Msa0106810:intron | 50.0% |
| !! | AAGAGTTTGTTGTGGGGGTG+GGG | - | chr1_3:16555223-16555242 | None:intergenic | 50.0% |
| !! | GAAGAGTTTGTTGTGGGGGT+GGG | - | chr1_3:16555224-16555243 | None:intergenic | 50.0% |
| !! | TGAAGAGTTTGTTGTGGGGG+TGG | - | chr1_3:16555225-16555244 | None:intergenic | 50.0% |
| AGATAGGGCTTGCGCTTGTT+TGG | - | chr1_3:16555437-16555456 | None:intergenic | 50.0% | |
| GCTGACATGTGAGGAGAGAT+AGG | - | chr1_3:16555453-16555472 | None:intergenic | 50.0% | |
| !! | GGAAGTATTGTTGGTGGTGG+TGG | - | chr1_3:16555523-16555542 | None:intergenic | 50.0% |
| CAAGTGCCCTTGAAGGGTCA+TGG | - | chr1_3:16552773-16552792 | None:intergenic | 55.0% | |
| !! | CATGACCCTTCAAGGGCACT+TGG | + | chr1_3:16552771-16552790 | Msa0106810:CDS | 55.0% |
| ! | AGGGCACTTGGTGATCTCAC+TGG | + | chr1_3:16552783-16552802 | Msa0106810:CDS | 55.0% |
| TGGTGCCCATAGGGTGGAAA+AGG | + | chr1_3:16553326-16553345 | Msa0106810:intron | 55.0% | |
| TCCCGAAAGGCCAAGTGTAG+TGG | - | chr1_3:16554769-16554788 | None:intergenic | 55.0% | |
| !!! | GCTGTCGTTTTGGCCATGGA+TGG | - | chr1_3:16555136-16555155 | None:intergenic | 55.0% |
| !!! | GGTTGCTGTCGTTTTGGCCA+TGG | - | chr1_3:16555140-16555159 | None:intergenic | 55.0% |
| GCCTTTCGGGATGCTTTCGC+TGG | + | chr1_3:16554778-16554797 | Msa0106810:intron | 60.0% | |
| !! | GCCAGCGAAAGCATCCCGAA+AGG | - | chr1_3:16554782-16554801 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16552552 | 16555752 | 16552552 | ID=Msa0106810;Name=Msa0106810 |
| chr1_3 | mRNA | 16552552 | 16555752 | 16552552 | ID=Msa0106810-mRNA-1;Parent=Msa0106810;Name=Msa0106810-mRNA-1;_AED=0.17;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|404 |
| chr1_3 | exon | 16552552 | 16552958 | 16552552 | ID=Msa0106810-mRNA-1:exon:6235;Parent=Msa0106810-mRNA-1 |
| chr1_3 | exon | 16554945 | 16555752 | 16554945 | ID=Msa0106810-mRNA-1:exon:6236;Parent=Msa0106810-mRNA-1 |
| chr1_3 | CDS | 16552552 | 16552958 | 16552552 | ID=Msa0106810-mRNA-1:cds;Parent=Msa0106810-mRNA-1 |
| chr1_3 | CDS | 16554945 | 16555752 | 16554945 | ID=Msa0106810-mRNA-1:cds;Parent=Msa0106810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
