AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0117400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117400 MtrunA17_Chr1g0174161 95.975 323 11 1 1 321 1 323 0.0 593
Msa0117400 MtrunA17_Chr7g0258161 67.347 343 84 7 1 321 1 337 3.20e-134 385
Msa0117400 MtrunA17_Chr4g0035101 55.147 136 56 1 113 243 93 228 1.69e-41 147
Msa0117400 MtrunA17_Chr1g0152131 44.809 183 74 5 119 277 224 403 1.16e-39 144
Msa0117400 MtrunA17_Chr7g0234761 44.500 200 87 6 102 283 243 436 1.37e-39 146
Msa0117400 MtrunA17_Chr3g0144641 68.041 97 31 0 155 251 188 284 3.10e-39 143
Msa0117400 MtrunA17_Chr8g0385911 60.163 123 38 5 149 266 134 250 4.95e-39 140
Msa0117400 MtrunA17_Chr8g0365941 55.224 134 51 3 110 240 260 387 1.12e-38 142
Msa0117400 MtrunA17_Chr5g0421111 70.787 89 26 0 155 243 362 450 3.66e-38 142
Msa0117400 MtrunA17_Chr8g0339091 59.804 102 41 0 155 256 288 389 4.84e-37 139
Msa0117400 MtrunA17_Chr8g0363921 69.412 85 26 0 155 239 148 232 3.59e-36 132
Msa0117400 MtrunA17_Chr5g0415291 53.543 127 59 0 103 229 57 183 5.95e-36 130
Msa0117400 MtrunA17_Chr3g0131771 55.652 115 42 2 155 266 144 252 1.59e-35 131
Msa0117400 MtrunA17_Chr6g0484271 43.949 157 71 2 82 235 90 232 1.96e-32 122
Msa0117400 MtrunA17_Chr4g0074161 49.485 97 39 3 154 246 202 292 5.90e-18 84.3
Msa0117400 MtrunA17_Chr1g0190731 38.889 126 69 4 158 281 193 312 3.77e-17 81.3
Msa0117400 MtrunA17_Chr1g0182791 46.377 69 36 1 160 228 319 386 1.38e-12 68.6
Msa0117400 MtrunA17_Chr1g0184841 49.425 87 38 3 158 239 120 205 6.47e-12 65.1
Msa0117400 MtrunA17_Chr1g0193321 41.429 70 40 1 161 230 465 533 9.19e-12 66.2
Msa0117400 MtrunA17_Chr4g0032951 46.154 65 35 0 158 222 355 419 1.13e-11 65.5
Msa0117400 MtrunA17_Chr4g0014771 46.154 65 35 0 158 222 118 182 1.42e-11 62.8
Msa0117400 MtrunA17_Chr3g0095391 31.429 105 70 2 161 265 312 414 1.60e-11 65.1
Msa0117400 MtrunA17_Chr1g0174271 44.928 69 38 0 158 226 298 366 4.55e-11 63.5
Msa0117400 MtrunA17_Chr7g0262691 33.594 128 75 2 105 223 190 316 9.98e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117400 AT3G57800.2 50.599 334 116 10 2 292 19 346 1.53e-86 266
Msa0117400 AT2G42300.1 49.518 311 110 8 6 293 20 306 3.30e-80 248
Msa0117400 AT3G57800.1 44.094 381 117 11 2 292 19 393 4.58e-77 243
Msa0117400 AT2G42300.4 50.958 261 95 5 6 243 20 270 6.41e-70 219
Msa0117400 AT1G26260.4 36.981 265 110 7 58 266 67 330 2.25e-44 157
Msa0117400 AT1G26260.1 36.981 265 110 7 58 266 67 330 2.25e-44 157
Msa0117400 AT1G26260.6 36.981 265 110 7 58 266 67 330 2.25e-44 157
Msa0117400 AT1G26260.2 36.981 265 110 7 58 266 67 330 2.25e-44 157
Msa0117400 AT1G26260.3 42.929 198 91 5 90 266 83 279 5.65e-43 152
Msa0117400 AT1G26260.5 42.929 198 91 5 90 266 112 308 1.00e-42 152
Msa0117400 AT3G07340.2 40.784 255 99 7 71 292 138 373 2.36e-42 152
Msa0117400 AT3G07340.1 41.107 253 97 7 73 292 140 373 3.29e-42 152
Msa0117400 AT3G23690.1 48.454 194 83 6 115 293 144 335 2.18e-41 148
Msa0117400 AT1G68920.1 60.684 117 40 2 155 266 300 415 3.77e-41 150
Msa0117400 AT1G68920.4 60.684 117 40 2 155 266 300 415 3.77e-41 150
Msa0117400 AT1G68920.2 60.684 117 40 2 155 266 300 415 3.77e-41 150
Msa0117400 AT1G68920.3 60.684 117 40 2 155 266 299 414 3.79e-41 150
Msa0117400 AT2G42300.2 44.186 215 87 5 6 197 20 224 5.58e-41 143
Msa0117400 AT2G42300.5 44.186 215 87 5 6 197 20 224 5.82e-41 143
Msa0117400 AT2G42300.3 44.186 215 87 5 6 197 20 224 5.82e-41 143
Msa0117400 AT1G10120.2 55.970 134 55 2 123 253 169 301 5.49e-40 144
Msa0117400 AT1G10120.1 55.970 134 55 2 123 253 169 301 5.49e-40 144
Msa0117400 AT4G34530.1 55.814 129 50 2 151 279 165 286 6.01e-39 141
Msa0117400 AT2G18300.1 44.242 165 67 3 120 265 130 288 6.79e-38 138
Msa0117400 AT5G48560.2 68.478 92 28 1 155 245 298 389 1.49e-37 140
Msa0117400 AT5G50915.3 45.604 182 84 8 112 283 89 265 2.10e-37 135
Msa0117400 AT5G50915.4 45.604 182 84 8 112 283 89 265 2.10e-37 135
Msa0117400 AT5G48560.1 68.478 92 28 1 155 245 298 389 2.38e-37 140
Msa0117400 AT5G50915.1 48.780 164 69 8 112 265 89 247 4.08e-37 135
Msa0117400 AT5G50915.2 48.780 164 69 8 112 265 89 247 4.08e-37 135
Msa0117400 AT2G18300.2 43.713 167 67 4 120 265 130 290 2.10e-36 134
Msa0117400 AT4G36540.2 48.921 139 64 3 113 244 89 227 3.06e-36 133
Msa0117400 AT4G36540.1 49.275 138 63 3 113 243 89 226 3.75e-36 133
Msa0117400 AT2G18300.3 45.860 157 60 3 120 257 130 280 5.85e-36 134
Msa0117400 AT1G59640.1 78.667 75 16 0 155 229 133 207 8.18e-36 131
Msa0117400 AT1G59640.2 65.979 97 33 0 155 251 133 229 2.12e-35 132
Msa0117400 AT5G62610.2 72.000 75 21 0 155 229 150 224 6.37e-32 121
Msa0117400 AT5G62610.1 72.000 75 21 0 155 229 150 224 6.37e-32 121
Msa0117400 AT1G18400.2 67.500 80 26 0 156 235 143 222 2.04e-31 119
Msa0117400 AT1G18400.1 67.500 80 26 0 156 235 143 222 3.45e-31 118
Msa0117400 AT1G73830.2 67.089 79 26 0 157 235 146 224 8.99e-31 117
Msa0117400 AT1G73830.1 67.089 79 26 0 157 235 146 224 9.48e-31 117
Msa0117400 AT1G25330.1 65.000 80 28 0 156 235 102 181 1.57e-29 113
Msa0117400 AT2G24260.2 60.606 66 25 1 158 223 35 99 2.45e-17 80.9
Msa0117400 AT4G30980.1 62.121 66 24 1 158 223 130 194 4.18e-17 81.3
Msa0117400 AT4G30980.2 62.121 66 24 1 158 223 178 242 6.58e-17 81.3
Msa0117400 AT2G24260.1 60.606 66 25 1 158 223 138 202 7.60e-17 80.9
Msa0117400 AT5G58010.1 61.194 67 25 1 157 223 98 163 7.94e-17 80.1
Msa0117400 AT2G20180.7 40.179 112 52 3 115 223 172 271 2.14e-15 77.0
Msa0117400 AT2G20180.1 40.179 112 52 3 115 223 172 271 2.14e-15 77.0
Msa0117400 AT2G20180.5 40.179 112 52 3 115 223 172 271 2.14e-15 77.0
Msa0117400 AT2G20180.4 40.179 112 52 3 115 223 243 342 3.13e-15 77.0
Msa0117400 AT2G20180.6 40.179 112 52 3 115 223 243 342 3.13e-15 77.0
Msa0117400 AT2G20180.2 40.179 112 52 3 115 223 243 342 3.13e-15 77.0
Msa0117400 AT2G20180.3 40.179 112 52 3 115 223 243 342 3.13e-15 77.0
Msa0117400 AT2G20180.8 39.450 109 51 3 115 220 243 339 4.53e-14 72.8
Msa0117400 AT4G28800.1 42.466 73 41 1 161 233 252 323 2.29e-12 68.2
Msa0117400 AT1G09530.3 46.032 63 33 1 161 223 340 401 4.46e-12 67.4
Msa0117400 AT1G09530.2 46.032 63 33 1 161 223 340 401 4.46e-12 67.4
Msa0117400 AT1G09530.5 46.032 63 33 1 161 223 340 401 4.46e-12 67.4
Msa0117400 AT1G09530.1 46.032 63 33 1 161 223 340 401 4.46e-12 67.4
Msa0117400 AT1G09530.4 46.032 63 33 1 161 223 340 401 4.46e-12 67.4
Msa0117400 AT1G09530.6 46.032 63 33 1 161 223 340 401 4.46e-12 67.4
Msa0117400 AT4G28815.2 36.082 97 57 2 161 253 71 166 1.11e-11 64.3
Msa0117400 AT2G43140.1 45.455 66 36 0 156 221 132 197 1.68e-11 63.5
Msa0117400 AT2G43140.2 45.455 66 36 0 156 221 229 294 1.78e-11 64.7
Msa0117400 AT4G28790.1 41.667 72 41 1 161 232 274 344 2.03e-11 65.1
Msa0117400 AT2G42280.1 37.778 90 55 1 132 221 254 342 3.19e-11 64.3
Msa0117400 AT4G28815.1 36.082 97 57 2 161 253 147 242 3.89e-11 63.5
Msa0117400 AT4G02590.3 48.837 86 38 3 158 238 83 167 5.58e-11 62.4
Msa0117400 AT4G02590.2 48.837 86 38 3 158 238 146 230 6.98e-11 62.8
Msa0117400 AT4G02590.1 48.837 86 38 3 158 238 146 230 6.98e-11 62.8

Find 120 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCATTGTGTGGGATTTC+TGG 0.105980 1_3:+38139088 None:intergenic
TCAAGGTTGAAATCAATTAT+TGG 0.224458 1_3:+38139939 None:intergenic
ATCAGGGACGGCATTGGTTT+TGG 0.245052 1_3:-38140593 Msa0117400:CDS
AAATTTGCTTTACAGATATC+AGG 0.249321 1_3:-38140610 Msa0117400:intron
TGTTTGTAATTGTAATAAAA+AGG 0.258988 1_3:+38144297 None:intergenic
TGCATTCCACCAACCACTTT+GGG 0.284445 1_3:-38139032 Msa0117400:CDS
CAAGGTTGAAATCAATTATT+GGG 0.303962 1_3:+38139940 None:intergenic
CTTCACTCGTCGGAGATTAC+CGG 0.318302 1_3:-38143854 Msa0117400:CDS
CAGTATGTATACTAACTATA+GGG 0.322900 1_3:-38138391 Msa0117400:three_prime_UTR
TATGACTCATCGGCAAATTC+AGG 0.337138 1_3:-38138956 Msa0117400:CDS
CGGAAGCTCCTCGCCGTTGC+CGG 0.341941 1_3:+38143449 None:intergenic
TATAGGGGTCATTCAGTCTT+AGG 0.342811 1_3:-38138375 Msa0117400:three_prime_UTR
GTTTGGATATCTCATATAAA+CGG 0.356627 1_3:+38144232 None:intergenic
TCAGTATGTATACTAACTAT+AGG 0.357630 1_3:-38138392 Msa0117400:three_prime_UTR
TTTCTGGGGTCATGAAATTA+GGG 0.358922 1_3:+38138993 None:intergenic
CCCGGCGAAAACGGAGAATC+TGG 0.372380 1_3:+38143748 None:intergenic
TTTCTCAAACCGGTTCATTT+CGG 0.375009 1_3:-38144023 Msa0117400:five_prime_UTR
GTTCTGTGTTGGTTCTTCTC+TGG 0.383542 1_3:+38144160 None:intergenic
ATGCATTCCACCAACCACTT+TGG 0.397314 1_3:-38139033 Msa0117400:CDS
TACTAAGTTAGTCGAGTTTG+TGG 0.403033 1_3:+38143718 None:intergenic
ATCGCCGCCGACGAGAATTC+CGG 0.408348 1_3:-38143468 Msa0117400:CDS
AGTTAACTGTGTAAGTTGTT+GGG 0.409414 1_3:+38144059 None:intergenic
GGAGAATGAAGGAGGGAAAG+AGG 0.412243 1_3:+38144082 None:intergenic
TCAGAGTCGGTTGGAAAACC+TGG 0.413514 1_3:-38138483 Msa0117400:three_prime_UTR
GGAAGGGAAAGTTAAATTAC+CGG 0.419559 1_3:+38143796 None:intergenic
CGAATTCCAAGAGTGCAAAA+AGG 0.420797 1_3:-38143634 Msa0117400:CDS
GAGTTCGCTGTTTCCGTCGC+CGG 0.429642 1_3:+38143923 None:intergenic
CAAGTCAGTGGATAGGGTTT+CGG 0.429991 1_3:+38143824 None:intergenic
TGCTGTCTGTTTCCATTGTG+TGG 0.436586 1_3:+38139079 None:intergenic
TTTGGATATCTCATATAAAC+GGG 0.441271 1_3:+38144233 None:intergenic
CAAACCGGTTCATTTCGGTT+TGG 0.446795 1_3:-38144018 Msa0117400:five_prime_UTR
CGAAGAAATTCAAGGAATCA+TGG 0.453331 1_3:-38143948 Msa0117400:CDS
CTTCTTCCTTGCTAGCCTGT+TGG 0.454803 1_3:+38138449 None:intergenic
GACCAAACCTTGTTGCAACC+TGG 0.459346 1_3:+38142413 None:intergenic
CTGTTGGCTGAATAAAATCC+AGG 0.459891 1_3:+38138465 None:intergenic
ATAATGTGCTTGTTCTGTGT+TGG 0.461228 1_3:+38144149 None:intergenic
AGATGAAGATGGAGCTATGA+AGG 0.464102 1_3:-38138616 Msa0117400:CDS
GTTTGAGAAAACTTGAAAAC+CGG 0.466672 1_3:+38144036 None:intergenic
GAGTTAACTGTGTAAGTTGT+TGG 0.466741 1_3:+38144058 None:intergenic
AATGAAACTGTTGCAAGAGC+TGG 0.476800 1_3:-38142438 Msa0117400:CDS
ACAGCGGGTGAAACTGCGTT+AGG 0.478912 1_3:+38139115 None:intergenic
GAGGAGAGAAAGAAAGAGAG+TGG 0.488095 1_3:+38144101 None:intergenic
CAATTCAACGAAGAAATTCA+AGG 0.489910 1_3:-38143956 Msa0117400:CDS
GTGTTGCAAGTCAGTGGATA+GGG 0.490731 1_3:+38143818 None:intergenic
TGAACCAAACCGAAATGAAC+CGG 0.491780 1_3:+38144014 None:intergenic
TGTCCTCTGTTTGTCAGAGT+CGG 0.492707 1_3:-38138496 Msa0117400:three_prime_UTR
TTACCCTTTCTGCTAAGCTA+TGG 0.495150 1_3:+38143385 None:intergenic
ACCAAACCTTGTTGCAACCT+GGG 0.495296 1_3:+38142414 None:intergenic
GCACTCAAATCAGATGAAGA+TGG 0.500237 1_3:-38138627 Msa0117400:CDS
GAGCAGGCACAACATTCAGC+AGG 0.501059 1_3:-38138526 Msa0117400:three_prime_UTR
GGGATTTCTGGCCACACAGC+GGG 0.504729 1_3:+38139100 None:intergenic
ACAGATATCAGGGACGGCAT+TGG 0.504989 1_3:-38140599 Msa0117400:intron
TCAACCAACGCGGCGTTGGA+AGG 0.508170 1_3:+38143779 None:intergenic
CTCTGTTTGTCAGAGTCGGT+TGG 0.512545 1_3:-38138492 Msa0117400:three_prime_UTR
CTGTTGCAAGAGCTGGTCCC+AGG 0.513301 1_3:-38142431 Msa0117400:CDS
TTGTAACGGAAGTGTTGAAT+AGG 0.513389 1_3:+38144273 None:intergenic
AGGAATCATGGCTCCGGCGA+CGG 0.514735 1_3:-38143936 Msa0117400:CDS
GCTGTCTGTTTCCATTGTGT+GGG 0.520796 1_3:+38139080 None:intergenic
TAGCCATAGCTTAGCAGAAA+GGG 0.520877 1_3:-38143388 Msa0117400:intron
CTTAGTAAAGGATGAGCTAC+CGG 0.525432 1_3:-38143702 Msa0117400:CDS
AGCTCGACGACCTGCGTCGG+TGG 0.526023 1_3:+38143878 None:intergenic
AAGGAAGGAACGAGAAAAGA+AGG 0.526931 1_3:-38143615 Msa0117400:intron
GTTAACTGTGTAAGTTGTTG+GGG 0.546502 1_3:+38144060 None:intergenic
AATTTGCTTTACAGATATCA+GGG 0.550424 1_3:-38140609 Msa0117400:intron
CATCCACCTTCTTCAGTCTC+CGG 0.551105 1_3:+38143683 None:intergenic
GGTGTTGCAAGTCAGTGGAT+AGG 0.551839 1_3:+38143817 None:intergenic
AATTCAAGGAATCATGGCTC+CGG 0.553332 1_3:-38143942 Msa0117400:CDS
CAACCAACGCGGCGTTGGAA+GGG 0.553760 1_3:+38143780 None:intergenic
GGATTCGAATTCGATGGTTG+AGG 0.554329 1_3:+38144318 None:intergenic
TTTCCCTTCCAACGCCGCGT+TGG 0.556664 1_3:-38143783 Msa0117400:CDS
TGCTTTACAGATATCAGGGA+CGG 0.557702 1_3:-38140605 Msa0117400:intron
AAACTCGACTAACTTAGTAA+AGG 0.561284 1_3:-38143714 Msa0117400:CDS
ATTCAGCCAACAGGCTAGCA+AGG 0.565949 1_3:-38138455 Msa0117400:three_prime_UTR
CAGCGGGTGAAACTGCGTTA+GGG 0.566488 1_3:+38139116 None:intergenic
GCCGACGAGAATTCCGGCAA+CGG 0.567888 1_3:-38143462 Msa0117400:CDS
GAATTTCCGTACTGTTGTAA+CGG 0.568743 1_3:+38144259 None:intergenic
GATGAAGATGGAGCTATGAA+GGG 0.570787 1_3:-38138615 Msa0117400:CDS
GAGCTACCGGAGACTGAAGA+AGG 0.570935 1_3:-38143689 Msa0117400:CDS
CTGCAGCTAATATGCTGTCA+AGG 0.571111 1_3:+38139922 None:intergenic
GTCAGTGGATAGGGTTTCGG+CGG 0.587492 1_3:+38143827 None:intergenic
ACTTCTAAGTTATGACTCAT+CGG 0.587921 1_3:-38138966 Msa0117400:CDS
ACACTTCCGTTACAACAGTA+CGG 0.590861 1_3:-38144265 Msa0117400:five_prime_UTR
GCGTTCAACCAACGCGGCGT+TGG 0.594819 1_3:+38143775 None:intergenic
GCCGTTGCCGGAATTCTCGT+CGG 0.595821 1_3:+38143461 None:intergenic
AAAGCAACGTTGTTACGCTA+CGG 0.596953 1_3:+38144200 None:intergenic
ACAACTTACACAGTTAACTC+CGG 0.599212 1_3:-38144055 Msa0117400:five_prime_UTR
ATTGTAGGGAATGTCTCTCA+TGG 0.599541 1_3:-38139149 Msa0117400:intron
GACAGCAATTTCAGCAATCG+TGG 0.599757 1_3:-38139063 Msa0117400:CDS
ATAGCCATAGCTTAGCAGAA+AGG 0.599793 1_3:-38143389 Msa0117400:CDS
CAGATTGTAAAATCATTGAA+CGG 0.599861 1_3:-38138339 Msa0117400:three_prime_UTR
TATCCACTGACTTGCAACAC+CGG 0.603238 1_3:-38143815 Msa0117400:CDS
CATTCCACCAACCACTTTGG+GGG 0.604196 1_3:-38139030 Msa0117400:CDS
CGAACTCGAACGTGAACGTA+CGG 0.605120 1_3:+38143429 None:intergenic
ATCTCTACAGCATGAAGTGG+AGG 0.605371 1_3:-38140548 Msa0117400:intron
CGTCGAGCTTCTTCACTCGT+CGG 0.607615 1_3:-38143864 Msa0117400:CDS
GCATTCCACCAACCACTTTG+GGG 0.608496 1_3:-38139031 Msa0117400:CDS
GAATTGAATCGACTCGAACG+TGG 0.610167 1_3:+38143973 None:intergenic
TCTTGAACTTCCACCGACGC+AGG 0.611122 1_3:-38143888 Msa0117400:CDS
TTACCGGTGTTGCAAGTCAG+TGG 0.611762 1_3:+38143812 None:intergenic
GCAATCTCTACAGCATGAAG+TGG 0.613170 1_3:-38140551 Msa0117400:CDS
AGTATGTATACTAACTATAG+GGG 0.615156 1_3:-38138390 Msa0117400:three_prime_UTR
GGTTTGGTTCAGTTGAACGA+TGG 0.616544 1_3:-38144002 Msa0117400:exon
TGGATGTGTCTCTGATCCAA+CGG 0.628322 1_3:-38143666 Msa0117400:CDS
CGAGAATTCCGGCAACGGCG+AGG 0.633666 1_3:-38143457 Msa0117400:CDS
ATGAAGGGGTACAGAAGCAG+TGG 0.635388 1_3:-38138600 Msa0117400:CDS
ACGCAGTTTCACCCGCTGTG+TGG 0.639303 1_3:-38139111 Msa0117400:CDS
AGAAGCTCGACGACCTGCGT+CGG 0.647459 1_3:+38143875 None:intergenic
CTACCGGAGACTGAAGAAGG+TGG 0.649449 1_3:-38143686 Msa0117400:CDS
TGGCCAGAAATCCCACACAA+TGG 0.662181 1_3:-38139091 Msa0117400:CDS
GCTGGTCCCAGGTTGCAACA+AGG 0.662336 1_3:-38142420 Msa0117400:intron
ATGAAGATGGAGCTATGAAG+GGG 0.663574 1_3:-38138614 Msa0117400:CDS
GGCGAAAACGGAGAATCTGG+CGG 0.667076 1_3:+38143751 None:intergenic
CAACCGACTCTGACAAACAG+AGG 0.673114 1_3:+38138493 None:intergenic
CGGTGGAAGTTCAAGAAGTG+CGG 0.677977 1_3:+38143895 None:intergenic
GTTGCCGGAATTCTCGTCGG+CGG 0.688782 1_3:+38143464 None:intergenic
TTAACTGTGTAAGTTGTTGG+GGG 0.694181 1_3:+38144061 None:intergenic
CATGCTGTAGAGATTGCACA+TGG 0.704416 1_3:+38140557 None:intergenic
TGGGATTTCTGGCCACACAG+CGG 0.724797 1_3:+38139099 None:intergenic
GGCGGCGCGTTCAACCAACG+CGG 0.742023 1_3:+38143769 None:intergenic
GTTCACGTTCGAGTTCGACG+AGG 0.757130 1_3:-38143423 Msa0117400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - chr1_3:38139665-38139684 Msa0117400:intron 0.0%
!! TATATATATATATATATATA+GGG + chr1_3:38139975-38139994 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr1_3:38139665-38139684 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr1_3:38139975-38139994 Msa0117400:intron 0.0%
!! ATAAAAAGTTATGAATTTAA+TGG + chr1_3:38139612-38139631 None:intergenic 10.0%
!! TTAATGTAATAATATATCAT+CGG - chr1_3:38139642-38139661 Msa0117400:intron 10.0%
!!! TAATTTTATTTTCAAGTATT+TGG - chr1_3:38141323-38141342 Msa0117400:intron 10.0%
!! AAGTTAGAAAATAATATAAA+TGG - chr1_3:38142476-38142495 Msa0117400:intron 10.0%
!!! AAATAATATCTGAAATTAAA+TGG + chr1_3:38143397-38143416 None:intergenic 10.0%
!! TGTTTGTAATTGTAATAAAA+AGG + chr1_3:38138306-38138325 None:intergenic 15.0%
!! AAATAAAAAATTGAGTTTAG+TGG - chr1_3:38139471-38139490 Msa0117400:intron 15.0%
!!! AAAACATGTACTTTAATTTT+TGG + chr1_3:38140387-38140406 None:intergenic 15.0%
!! TATCAAAGAAATTATACATA+AGG - chr1_3:38140554-38140573 Msa0117400:CDS 15.0%
!! ATCAAAGAAATTATACATAA+GGG - chr1_3:38140555-38140574 Msa0117400:CDS 15.0%
!!! AGTAAATAAAAGTACTTTTT+GGG + chr1_3:38140630-38140649 None:intergenic 15.0%
!!! TAGTAAATAAAAGTACTTTT+TGG + chr1_3:38140631-38140650 None:intergenic 15.0%
!! ATCTTGTAAATAATGAAAAT+TGG - chr1_3:38141557-38141576 Msa0117400:intron 15.0%
!! TCTTGTAAATAATGAAAATT+GGG - chr1_3:38141558-38141577 Msa0117400:intron 15.0%
!! TATAAATACAATCTAAAGAA+GGG + chr1_3:38141917-38141936 None:intergenic 15.0%
!! ATATAAATACAATCTAAAGA+AGG + chr1_3:38141918-38141937 None:intergenic 15.0%
!!! TTAAGAACTTTAAAAATTAG+TGG - chr1_3:38142188-38142207 Msa0117400:intron 15.0%
!!! ATATTATTTTCTAACTTTCA+AGG + chr1_3:38142473-38142492 None:intergenic 15.0%
!! CAAAATTGAAAATATTTCAT+AGG - chr1_3:38142525-38142544 Msa0117400:intron 15.0%
!!! TTTTCTCTTTTATTGAAAAA+AGG - chr1_3:38142715-38142734 Msa0117400:intron 15.0%
!! TAAAAATTAAAATGTCAAGA+AGG + chr1_3:38142837-38142856 None:intergenic 15.0%
!!! TGTAAATATTTTTTTTCTTG+AGG - chr1_3:38143143-38143162 Msa0117400:intron 15.0%
!!! GTAAATATTTTTTTTCTTGA+GGG - chr1_3:38143144-38143163 Msa0117400:intron 15.0%
!!! AAGTTTTAAAATTGATTGAA+AGG - chr1_3:38143849-38143868 Msa0117400:CDS 15.0%
!!! AGTTTTAAAATTGATTGAAA+GGG - chr1_3:38143850-38143869 Msa0117400:CDS 15.0%
!!! TTGCACTTAGAATTAATTTT+AGG - chr1_3:38139339-38139358 Msa0117400:intron 20.0%
!! TTTCAAAAGATTATATGATG+TGG - chr1_3:38139385-38139404 Msa0117400:intron 20.0%
!!! TTTTAATTAGAATACTCTGA+CGG + chr1_3:38139449-38139468 None:intergenic 20.0%
!! AAAAATATTAATTGATACGG+TGG - chr1_3:38139565-38139584 Msa0117400:intron 20.0%
!! AAAAGTTATGAATTTAATGG+TGG + chr1_3:38139609-38139628 None:intergenic 20.0%
!!! TTTTAATTTGATTGTGTTGT+AGG - chr1_3:38140114-38140133 Msa0117400:intron 20.0%
!! TGAAGATTAACATCTTAAAA+AGG + chr1_3:38140222-38140241 None:intergenic 20.0%
!!! TACTTTAATTTTTGGTGAAA+AGG + chr1_3:38140379-38140398 None:intergenic 20.0%
!! AAACTTTGTGGTTTATTTAA+TGG + chr1_3:38140515-38140534 None:intergenic 20.0%
!! CATATATCTAAAAAACTTTG+TGG + chr1_3:38140527-38140546 None:intergenic 20.0%
!!! CTTGATATCAATTTTTGTTA+AGG + chr1_3:38140721-38140740 None:intergenic 20.0%
!!! ATAGTAATTCTTTTTTGCTA+TGG - chr1_3:38140769-38140788 Msa0117400:intron 20.0%
!!! TAAAACAATGGATTGATTTA+TGG + chr1_3:38140795-38140814 None:intergenic 20.0%
!!! AATCCATTGTTTTATGAAAA+AGG - chr1_3:38140801-38140820 Msa0117400:intron 20.0%
!! ATTTATGGGATAATGAATAT+AGG - chr1_3:38141096-38141115 Msa0117400:intron 20.0%
!! TTTATGGGATAATGAATATA+GGG - chr1_3:38141097-38141116 Msa0117400:intron 20.0%
!! TGTGTATATAACTAAAGTTT+AGG + chr1_3:38141223-38141242 None:intergenic 20.0%
!! ATCAAGCATGATTTATTAAT+AGG + chr1_3:38141402-38141421 None:intergenic 20.0%
!! CTTGTAAATAATGAAAATTG+GGG - chr1_3:38141559-38141578 Msa0117400:intron 20.0%
!! TTGTAAATAATGAAAATTGG+GGG - chr1_3:38141560-38141579 Msa0117400:intron 20.0%
!! ATCGTGTAAATAATGAAAAT+TGG - chr1_3:38141770-38141789 Msa0117400:intron 20.0%
!! TCGTGTAAATAATGAAAATT+GGG - chr1_3:38141771-38141790 Msa0117400:intron 20.0%
!! AAATTAAGAAACCTTAAACA+CGG - chr1_3:38141679-38141698 Msa0117400:intron 20.0%
!!! ATTTTATATAACTGACATTC+TGG - chr1_3:38142079-38142098 Msa0117400:intron 20.0%
!!! TTTTATATAACTGACATTCT+GGG - chr1_3:38142080-38142099 Msa0117400:intron 20.0%
!! TAATGTCATATAGAATAACA+GGG + chr1_3:38142333-38142352 None:intergenic 20.0%
!! ATAATGTCATATAGAATAAC+AGG + chr1_3:38142334-38142353 None:intergenic 20.0%
!! GGAATTTATTTATTTGTCTT+TGG - chr1_3:38142736-38142755 Msa0117400:intron 20.0%
!! TTTATTTATTTGTCTTTGGT+TGG - chr1_3:38142740-38142759 Msa0117400:intron 20.0%
!! TTATTTATTTGTCTTTGGTT+GGG - chr1_3:38142741-38142760 Msa0117400:intron 20.0%
!! TAGTCTAATAAAACTAAATC+AGG + chr1_3:38142905-38142924 None:intergenic 20.0%
!!! TCATCAAATTTGTTTTTACT+TGG - chr1_3:38142967-38142986 Msa0117400:intron 20.0%
!! AATAGTTAAACTCAATTAGA+TGG + chr1_3:38142993-38143012 None:intergenic 20.0%
!!! AATGAATTTTTATTAGCAGA+AGG + chr1_3:38143426-38143445 None:intergenic 20.0%
!! ATTAATATGTCCTTAAGATA+AGG - chr1_3:38143899-38143918 Msa0117400:CDS 20.0%
! TTTGGATATCTCATATAAAC+GGG + chr1_3:38138370-38138389 None:intergenic 25.0%
! GTTTGGATATCTCATATAAA+CGG + chr1_3:38138371-38138390 None:intergenic 25.0%
! ACGAACTCAATTGAAAAATT+AGG - chr1_3:38139025-38139044 Msa0117400:CDS 25.0%
! CGAACTCAATTGAAAAATTA+GGG - chr1_3:38139026-38139045 Msa0117400:CDS 25.0%
! TGAATTTCTCACTAATTTGA+GGG - chr1_3:38139054-38139073 Msa0117400:CDS 25.0%
! TAAAAAATTGAGTTTAGTGG+TGG - chr1_3:38139474-38139493 Msa0117400:intron 25.0%
! ACACCTTAATAAAAACTAGT+GGG + chr1_3:38139706-38139725 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG - chr1_3:38139749-38139768 Msa0117400:intron 25.0%
!! TTTTAGTAACATTCACCTTA+AGG + chr1_3:38139767-38139786 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG - chr1_3:38139788-38139807 Msa0117400:intron 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG + chr1_3:38139788-38139807 None:intergenic 25.0%
! AAGTAGTTAAATACACCTTA+AGG - chr1_3:38139895-38139914 Msa0117400:intron 25.0%
! CATCTTAAAAAGGAATGAAA+AGG + chr1_3:38140212-38140231 None:intergenic 25.0%
! AGACAATTTAGACTAAATCA+TGG + chr1_3:38140294-38140313 None:intergenic 25.0%
!! AAAGACACAATAGTACTTTT+AGG + chr1_3:38140317-38140336 None:intergenic 25.0%
!!! TAAAAGTACTATTGTGTCTT+TGG - chr1_3:38140316-38140335 Msa0117400:intron 25.0%
! ATACATAAGGGAAATAGTAT+TGG - chr1_3:38140567-38140586 Msa0117400:CDS 25.0%
!!! TGTCCTTTTTCATAAAACAA+TGG + chr1_3:38140807-38140826 None:intergenic 25.0%
! TTTGTAGTACAGGATAATTA+AGG - chr1_3:38140847-38140866 Msa0117400:intron 25.0%
! ATTAGTATTTCACTTCCTTA+GGG + chr1_3:38141021-38141040 None:intergenic 25.0%
! TGAAATACTAATCCATCTTT+GGG - chr1_3:38141029-38141048 Msa0117400:intron 25.0%
! TGGTATCTATCAATCATTTA+TGG - chr1_3:38141081-38141100 Msa0117400:intron 25.0%
! GGTATCTATCAATCATTTAT+GGG - chr1_3:38141082-38141101 Msa0117400:intron 25.0%
!! AAGAAACCATAACTTTTAGA+AGG - chr1_3:38141126-38141145 Msa0117400:intron 25.0%
!! ATATTGCCTTCTAAAAGTTA+TGG + chr1_3:38141135-38141154 None:intergenic 25.0%
!! CATTTAGATTGCAAAGTTTT+GGG + chr1_3:38141436-38141455 None:intergenic 25.0%
!! TCATTTAGATTGCAAAGTTT+TGG + chr1_3:38141437-38141456 None:intergenic 25.0%
! TGTAAATAATGAAAATTGGG+GGG - chr1_3:38141561-38141580 Msa0117400:intron 25.0%
! AAAACAAAACTCACAAAGAA+GGG + chr1_3:38141705-38141724 None:intergenic 25.0%
! TAAAACAAAACTCACAAAGA+AGG + chr1_3:38141706-38141725 None:intergenic 25.0%
! CGTGTAAATAATGAAAATTG+GGG - chr1_3:38141772-38141791 Msa0117400:intron 25.0%
! GTGTAAATAATGAAAATTGG+GGG - chr1_3:38141773-38141792 Msa0117400:intron 25.0%
! TGTAAATAATGAAAATTGGG+GGG - chr1_3:38141561-38141580 Msa0117400:intron 25.0%
!! AAATTTGCTTTACAGATATC+AGG - chr1_3:38141990-38142009 Msa0117400:intron 25.0%
!! AATTTGCTTTACAGATATCA+GGG - chr1_3:38141991-38142010 Msa0117400:intron 25.0%
! TTTGAAGGATCAGATAAATA+CGG + chr1_3:38142232-38142251 None:intergenic 25.0%
!! TGCAAATTTTTCTACAAAAG+TGG - chr1_3:38142358-38142377 Msa0117400:intron 25.0%
! CAAGGTTGAAATCAATTATT+GGG + chr1_3:38142663-38142682 None:intergenic 25.0%
! TCAAGGTTGAAATCAATTAT+TGG + chr1_3:38142664-38142683 None:intergenic 25.0%
!!! TTTTTAGTTCGAATTTATCG+AGG - chr1_3:38142851-38142870 Msa0117400:intron 25.0%
! TGAAATGATGAACATGAAAA+TGG - chr1_3:38143035-38143054 Msa0117400:intron 25.0%
! GAAATGATGAACATGAAAAT+GGG - chr1_3:38143036-38143055 Msa0117400:intron 25.0%
! AAATGATGAACATGAAAATG+GGG - chr1_3:38143037-38143056 Msa0117400:intron 25.0%
!! AATGTAATAGAGTACTTAAC+AGG - chr1_3:38143171-38143190 Msa0117400:intron 25.0%
!!! TTGTTACTTTTTAGTTACCA+AGG - chr1_3:38143282-38143301 Msa0117400:intron 25.0%
!! TATCTGAAATTAAATGGAGA+AGG + chr1_3:38143391-38143410 None:intergenic 25.0%
! AAAATTCATTGTGACATTGT+AGG - chr1_3:38143436-38143455 Msa0117400:CDS 25.0%
! AAATTCATTGTGACATTGTA+GGG - chr1_3:38143437-38143456 Msa0117400:CDS 25.0%
! TGTCTAATTTAATCACATCA+TGG - chr1_3:38143690-38143709 Msa0117400:CDS 25.0%
!!! AATATAGTTTTGATTTGAGC+AGG - chr1_3:38144058-38144077 Msa0117400:five_prime_UTR 25.0%
! TCAGTATGTATACTAACTAT+AGG - chr1_3:38144208-38144227 Msa0117400:five_prime_UTR 25.0%
! CAGTATGTATACTAACTATA+GGG - chr1_3:38144209-38144228 Msa0117400:five_prime_UTR 25.0%
! AGTATGTATACTAACTATAG+GGG - chr1_3:38144210-38144229 Msa0117400:five_prime_UTR 25.0%
! CAGATTGTAAAATCATTGAA+CGG - chr1_3:38144261-38144280 Msa0117400:five_prime_UTR 25.0%
TAAAAAGGATTCGAATTCGA+TGG + chr1_3:38138291-38138310 None:intergenic 30.0%
AGTTAACTGTGTAAGTTGTT+GGG + chr1_3:38138544-38138563 None:intergenic 30.0%
GTTTGAGAAAACTTGAAAAC+CGG + chr1_3:38138567-38138586 None:intergenic 30.0%
!!! GTTTTCAAGTTTTCTCAAAC+CGG - chr1_3:38138567-38138586 Msa0117400:exon 30.0%
CAATTCAACGAAGAAATTCA+AGG - chr1_3:38138644-38138663 Msa0117400:intron 30.0%
AAACTCGACTAACTTAGTAA+AGG - chr1_3:38138886-38138905 Msa0117400:intron 30.0%
CTGAATTTCTCACTAATTTG+AGG - chr1_3:38139053-38139072 Msa0117400:CDS 30.0%
! ATGATGTGGCAGATTTTTAT+TGG - chr1_3:38139399-38139418 Msa0117400:intron 30.0%
!!! GCGTGTAAAGTTGTTTTAAA+CGG + chr1_3:38139508-38139527 None:intergenic 30.0%
GTTATGAATTTAATGGTGGT+GGG + chr1_3:38139605-38139624 None:intergenic 30.0%
AGTTATGAATTTAATGGTGG+TGG + chr1_3:38139606-38139625 None:intergenic 30.0%
! ATATATATATGGGGTTTGCT+AGG - chr1_3:38139675-38139694 Msa0117400:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG - chr1_3:38139700-38139719 Msa0117400:intron 30.0%
CACACCTTAATAAAAACTAG+TGG + chr1_3:38139707-38139726 None:intergenic 30.0%
! CACACCTTCTAAAAAATAAG+TGG - chr1_3:38139787-38139806 Msa0117400:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + chr1_3:38139847-38139866 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - chr1_3:38139847-38139866 Msa0117400:intron 30.0%
! CACACCTTCTAAAAAATAAG+TGG + chr1_3:38139787-38139806 None:intergenic 30.0%
! TTTTAGCAAACTACACCTTA+AGG + chr1_3:38139913-38139932 None:intergenic 30.0%
ACTATTGTGTCTTTGGATTA+TGG - chr1_3:38140323-38140342 Msa0117400:intron 30.0%
CTATTGTGTCTTTGGATTAT+GGG - chr1_3:38140324-38140343 Msa0117400:intron 30.0%
TATTGTGTCTTTGGATTATG+GGG - chr1_3:38140325-38140344 Msa0117400:intron 30.0%
!! CTGACTTGTAATTTTGTAAG+AGG + chr1_3:38140596-38140615 None:intergenic 30.0%
CTTACAAAATTACAAGTCAG+TGG - chr1_3:38140596-38140615 Msa0117400:CDS 30.0%
AGGAATAAAATCTGTTTAGG+AGG + chr1_3:38140664-38140683 None:intergenic 30.0%
GTGAGGAATAAAATCTGTTT+AGG + chr1_3:38140667-38140686 None:intergenic 30.0%
CACATTTAGAGAAAAATGTG+AGG + chr1_3:38140684-38140703 None:intergenic 30.0%
! CTCACATTTTTCTCTAAATG+TGG - chr1_3:38140682-38140701 Msa0117400:intron 30.0%
! TGTGTTGATACATGTATTCA+TGG - chr1_3:38140992-38141011 Msa0117400:intron 30.0%
! GTGTTGATACATGTATTCAT+GGG - chr1_3:38140993-38141012 Msa0117400:intron 30.0%
TTAGTATTTCACTTCCTTAG+GGG + chr1_3:38141020-38141039 None:intergenic 30.0%
GATTAGTATTTCACTTCCTT+AGG + chr1_3:38141022-38141041 None:intergenic 30.0%
GTGAAATACTAATCCATCTT+TGG - chr1_3:38141028-38141047 Msa0117400:intron 30.0%
TACCAAACAATAAACCTAAC+TGG - chr1_3:38141156-38141175 Msa0117400:intron 30.0%
ACCAAACAATAAACCTAACT+GGG - chr1_3:38141157-38141176 Msa0117400:intron 30.0%
!!! CATTGTTTTTTTTTCCCCTT+TGG - chr1_3:38141280-38141299 Msa0117400:intron 30.0%
GTTTGTCAATTGTCAATATC+AGG - chr1_3:38141529-38141548 Msa0117400:intron 30.0%
!! TCAGATTATTTTACCCGTAT+TGG + chr1_3:38141592-38141611 None:intergenic 30.0%
ATTATAAAGTATGTTCGACC+AGG - chr1_3:38141621-38141640 Msa0117400:intron 30.0%
!! AATAGCTTTGAATCAAATCC+TGG + chr1_3:38141642-38141661 None:intergenic 30.0%
GTTTGTCAATTGTCAATATC+AGG - chr1_3:38141529-38141548 Msa0117400:intron 30.0%
!! TCAGATTATTTTACCCGTAT+TGG + chr1_3:38141592-38141611 None:intergenic 30.0%
!! AATAGCTTTGAATCAAATCG+TGG + chr1_3:38141854-38141873 None:intergenic 30.0%
TTGAAGGATCAGATAAATAC+GGG + chr1_3:38142231-38142250 None:intergenic 30.0%
ATTTCATAGGATCTTTCTGT+TGG - chr1_3:38142538-38142557 Msa0117400:intron 30.0%
! GCAGATTTTATCAATGAAAC+TGG - chr1_3:38142627-38142646 Msa0117400:intron 30.0%
!! CTTGGCTCTAAAAATATTTG+AGG - chr1_3:38142794-38142813 Msa0117400:intron 30.0%
ATTCTTCTAAGTTTCCACAT+TGG - chr1_3:38142934-38142953 Msa0117400:intron 30.0%
ATGAATAACTCTAACCAATG+TGG + chr1_3:38142951-38142970 None:intergenic 30.0%
CTGGTATATGGAATAGAAAA+GGG - chr1_3:38143312-38143331 Msa0117400:intron 30.0%
! ATGCGATGTATATGATTTTG+TGG - chr1_3:38143342-38143361 Msa0117400:intron 30.0%
! AACTTAGAAGTGAGTTTTCT+GGG + chr1_3:38143625-38143644 None:intergenic 30.0%
! TAACTTAGAAGTGAGTTTTC+TGG + chr1_3:38143626-38143645 None:intergenic 30.0%
ACTTCTAAGTTATGACTCAT+CGG - chr1_3:38143634-38143653 Msa0117400:CDS 30.0%
TGAGGGATAAACAAATTGAA+AGG - chr1_3:38143766-38143785 Msa0117400:CDS 30.0%
TTACTTATTAGCATGTCTCT+CGG + chr1_3:38143803-38143822 None:intergenic 30.0%
GAGACATGCTAATAAGTAAT+TGG - chr1_3:38143804-38143823 Msa0117400:CDS 30.0%
!! CTACTTCTGAAGATTTTCAA+TGG - chr1_3:38144331-38144350 Msa0117400:five_prime_UTR 30.0%
!! TTGTAACGGAAGTGTTGAAT+AGG + chr1_3:38138330-38138349 None:intergenic 35.0%
GAATTTCCGTACTGTTGTAA+CGG + chr1_3:38138344-38138363 None:intergenic 35.0%
ATAATGTGCTTGTTCTGTGT+TGG + chr1_3:38138454-38138473 None:intergenic 35.0%
TTAACTGTGTAAGTTGTTGG+GGG + chr1_3:38138542-38138561 None:intergenic 35.0%
GTTAACTGTGTAAGTTGTTG+GGG + chr1_3:38138543-38138562 None:intergenic 35.0%
GAGTTAACTGTGTAAGTTGT+TGG + chr1_3:38138545-38138564 None:intergenic 35.0%
ACAACTTACACAGTTAACTC+CGG - chr1_3:38138545-38138564 Msa0117400:three_prime_UTR 35.0%
! TTTCTCAAACCGGTTCATTT+CGG - chr1_3:38138577-38138596 Msa0117400:exon 35.0%
CGAAGAAATTCAAGGAATCA+TGG - chr1_3:38138652-38138671 Msa0117400:intron 35.0%
GGAAGGGAAAGTTAAATTAC+CGG + chr1_3:38138807-38138826 None:intergenic 35.0%
TACTAAGTTAGTCGAGTTTG+TGG + chr1_3:38138885-38138904 None:intergenic 35.0%
AAAATTGAGTTTAGTGGTGG+TGG - chr1_3:38139477-38139496 Msa0117400:intron 35.0%
TGTATGTTAGCAACTCCTAT+AGG - chr1_3:38139811-38139830 Msa0117400:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr1_3:38139934-38139953 Msa0117400:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr1_3:38139940-38139959 None:intergenic 35.0%
ATTTGATTGTGTTGTAGGCT+AGG - chr1_3:38140119-38140138 Msa0117400:intron 35.0%
! GTGAAAAGGTGATAATGACA+TGG + chr1_3:38140365-38140384 None:intergenic 35.0%
AATCTGTTTAGGAGGATTGT+AGG + chr1_3:38140656-38140675 None:intergenic 35.0%
TACGTCATTGTTTGTAGTAC+AGG - chr1_3:38140837-38140856 Msa0117400:intron 35.0%
TAAGTCAGAAAGCCAAAGAA+AGG + chr1_3:38140888-38140907 None:intergenic 35.0%
!! TCTTTGGCTTTCTGACTTAT+TGG - chr1_3:38140889-38140908 Msa0117400:intron 35.0%
TGAAAGGGAATTATTCTAGC+TGG - chr1_3:38140946-38140965 Msa0117400:intron 35.0%
! ATACTAATCCATCTTTGGGA+AGG - chr1_3:38141033-38141052 Msa0117400:intron 35.0%
GTTACCATCAACACTTTGTT+TGG - chr1_3:38141061-38141080 Msa0117400:intron 35.0%
!! GATACCAAACAAAGTGTTGA+TGG + chr1_3:38141068-38141087 None:intergenic 35.0%
ATGGGATAATGAATATAGGG+TGG - chr1_3:38141100-38141119 Msa0117400:intron 35.0%
TGGGATAATGAATATAGGGT+GGG - chr1_3:38141101-38141120 Msa0117400:intron 35.0%
ACCCAGTTAGGTTTATTGTT+TGG + chr1_3:38141161-38141180 None:intergenic 35.0%
!!! TGTTTTTTTTTCCCCTTTGG+TGG - chr1_3:38141283-38141302 Msa0117400:intron 35.0%
TAGATTGTACTTGTGCGTAT+TGG - chr1_3:38141347-38141366 Msa0117400:intron 35.0%
TAATAGGTGAAGTGTATGTG+TGG + chr1_3:38141386-38141405 None:intergenic 35.0%
GATACAACAACAAATGATGC+TGG + chr1_3:38141464-38141483 None:intergenic 35.0%
GTGGTCGAACATACTTATAA+TGG + chr1_3:38141835-38141854 None:intergenic 35.0%
AGTTCTTAAGCACTATCTAC+AGG + chr1_3:38142177-38142196 None:intergenic 35.0%
TGAAGGATCAGATAAATACG+GGG + chr1_3:38142230-38142249 None:intergenic 35.0%
! ATGTTCCTAAGCACTTTTGA+AGG + chr1_3:38142247-38142266 None:intergenic 35.0%
AAATTAGGCAATGTGACGAT+CGG + chr1_3:38142392-38142411 None:intergenic 35.0%
TTCTAGACTTCTGCATTGTT+TGG - chr1_3:38142437-38142456 Msa0117400:CDS 35.0%
! CTGAACTACATGTACTTTTC+TGG - chr1_3:38142771-38142790 Msa0117400:intron 35.0%
!!! ACTTTTTAGTTACCAAGGTC+TGG - chr1_3:38143287-38143306 Msa0117400:intron 35.0%
!!! CTTTTTAGTTACCAAGGTCT+GGG - chr1_3:38143288-38143307 Msa0117400:intron 35.0%
!!! TTTTTAGTTACCAAGGTCTG+GGG - chr1_3:38143289-38143308 Msa0117400:intron 35.0%
GCTGGTATATGGAATAGAAA+AGG - chr1_3:38143311-38143330 Msa0117400:intron 35.0%
TTAAATGGAGAAGGCTGAAT+TGG + chr1_3:38143382-38143401 None:intergenic 35.0%
!! TTTCTGGGGTCATGAAATTA+GGG + chr1_3:38143610-38143629 None:intergenic 35.0%
!!! TTTTCTGGGGTCATGAAATT+AGG + chr1_3:38143611-38143630 None:intergenic 35.0%
! ACTTAGAAGTGAGTTTTCTG+GGG + chr1_3:38143624-38143643 None:intergenic 35.0%
!! ATCATGGTTGCTATTTCCTT+TGG - chr1_3:38143706-38143725 Msa0117400:CDS 35.0%
AGCTTTCATAAGACAAGGAT+TGG - chr1_3:38143734-38143753 Msa0117400:CDS 35.0%
TTCATCAGCTCCTTATCTTA+AGG + chr1_3:38143912-38143931 None:intergenic 35.0%
ACACTTCCGTTACAACAGTA+CGG - chr1_3:38138335-38138354 Msa0117400:three_prime_UTR 40.0%
!!! TGTTACGCTACGGTTTTGTT+TGG + chr1_3:38138393-38138412 None:intergenic 40.0%
AAAGCAACGTTGTTACGCTA+CGG + chr1_3:38138403-38138422 None:intergenic 40.0%
TGAACCAAACCGAAATGAAC+CGG + chr1_3:38138589-38138608 None:intergenic 40.0%
AATTCAAGGAATCATGGCTC+CGG - chr1_3:38138658-38138677 Msa0117400:intron 40.0%
CTTAGTAAAGGATGAGCTAC+CGG - chr1_3:38138898-38138917 Msa0117400:intron 40.0%
! CGAATTCCAAGAGTGCAAAA+AGG - chr1_3:38138966-38138985 Msa0117400:CDS 40.0%
! TTCCAAGAGTGCAAAAAGGA+AGG - chr1_3:38138970-38138989 Msa0117400:CDS 40.0%
! TTCCTTCCTTTTTGCACTCT+TGG + chr1_3:38138975-38138994 None:intergenic 40.0%
AAGGAAGGAACGAGAAAAGA+AGG - chr1_3:38138985-38139004 Msa0117400:CDS 40.0%
ATAGCCATAGCTTAGCAGAA+AGG - chr1_3:38139211-38139230 Msa0117400:intron 40.0%
TAGCCATAGCTTAGCAGAAA+GGG - chr1_3:38139212-38139231 Msa0117400:intron 40.0%
TTACCCTTTCTGCTAAGCTA+TGG + chr1_3:38139218-38139237 None:intergenic 40.0%
!! ATTTAATGGTGGTGGGTTGA+CGG + chr1_3:38139598-38139617 None:intergenic 40.0%
AACTCCTATAGGCATTTGCT+AGG - chr1_3:38139822-38139841 Msa0117400:intron 40.0%
GTATCCTAGCAAATGCCTAT+AGG + chr1_3:38139829-38139848 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - chr1_3:38139933-38139952 Msa0117400:CDS 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr1_3:38139941-38139960 None:intergenic 40.0%
AATGAAACTGTTGCAAGAGC+TGG - chr1_3:38140162-38140181 Msa0117400:intron 40.0%
AAAAATGCCCATGTTGCAGT+GGG + chr1_3:38140436-38140455 None:intergenic 40.0%
AGCCAAAGAAAGGAACAAGA+GGG + chr1_3:38140878-38140897 None:intergenic 40.0%
AAGCCAAAGAAAGGAACAAG+AGG + chr1_3:38140879-38140898 None:intergenic 40.0%
! GAATTATTCTAGCTGGACTC+TGG - chr1_3:38140953-38140972 Msa0117400:intron 40.0%
!! TGGACTCTGGCTTTAACAAT+TGG - chr1_3:38140966-38140985 Msa0117400:intron 40.0%
TGAAATGCTGAAACCCAGTT+AGG + chr1_3:38141173-38141192 None:intergenic 40.0%
!! TACTTGTGCGTATTGGTTTG+TGG - chr1_3:38141354-38141373 Msa0117400:intron 40.0%
!! ACTTGTGCGTATTGGTTTGT+GGG - chr1_3:38141355-38141374 Msa0117400:intron 40.0%
ACAAAGAAGGGCTGTGTTTA+AGG + chr1_3:38141693-38141712 None:intergenic 40.0%
TGCTTTACAGATATCAGGGA+CGG - chr1_3:38141995-38142014 Msa0117400:intron 40.0%
CAGATAAATACGGGGAAGAA+AGG + chr1_3:38142222-38142241 None:intergenic 40.0%
!! CTGATCCTTCAAAAGTGCTT+AGG - chr1_3:38142239-38142258 Msa0117400:intron 40.0%
GATCGTCACATTGCCTAATT+TGG - chr1_3:38142391-38142410 Msa0117400:intron 40.0%
CATTGCCTAATTTGGACTTC+AGG - chr1_3:38142399-38142418 Msa0117400:intron 40.0%
TCAAGCCTGAAGTCCAAATT+AGG + chr1_3:38142407-38142426 None:intergenic 40.0%
TTTCTGTTGGAACACATTGC+AGG - chr1_3:38142551-38142570 Msa0117400:intron 40.0%
!!! CTACATGTACTTTTCTGGCT+TGG - chr1_3:38142776-38142795 Msa0117400:intron 40.0%
TCATACGCACAACTGTAGAT+AGG + chr1_3:38142877-38142896 None:intergenic 40.0%
CTACAGAGTGGAATGAATGA+CGG + chr1_3:38143095-38143114 None:intergenic 40.0%
ATTGTAGGGAATGTCTCTCA+TGG - chr1_3:38143451-38143470 Msa0117400:CDS 40.0%
TTTCCATTGTGTGGGATTTC+TGG + chr1_3:38143515-38143534 None:intergenic 40.0%
TATGACTCATCGGCAAATTC+AGG - chr1_3:38143644-38143663 Msa0117400:CDS 40.0%
TTATGAAAGCTCGATGCCAA+AGG + chr1_3:38143725-38143744 None:intergenic 40.0%
CATCGAGCTTTCATAAGACA+AGG - chr1_3:38143729-38143748 Msa0117400:CDS 40.0%
GCACTCAAATCAGATGAAGA+TGG - chr1_3:38143973-38143992 Msa0117400:CDS 40.0%
AGATGAAGATGGAGCTATGA+AGG - chr1_3:38143984-38144003 Msa0117400:CDS 40.0%
GATGAAGATGGAGCTATGAA+GGG - chr1_3:38143985-38144004 Msa0117400:CDS 40.0%
ATGAAGATGGAGCTATGAAG+GGG - chr1_3:38143986-38144005 Msa0117400:CDS 40.0%
! CTGTTGGCTGAATAAAATCC+AGG + chr1_3:38144138-38144157 None:intergenic 40.0%
! CTGGATTTTATTCAGCCAAC+AGG - chr1_3:38144136-38144155 Msa0117400:five_prime_UTR 40.0%
TATAGGGGTCATTCAGTCTT+AGG - chr1_3:38144225-38144244 Msa0117400:five_prime_UTR 40.0%
GGATTCGAATTCGATGGTTG+AGG + chr1_3:38138285-38138304 None:intergenic 45.0%
!!! CGCTACGGTTTTGTTTGGTT+TGG + chr1_3:38138388-38138407 None:intergenic 45.0%
!! GTTCTGTGTTGGTTCTTCTC+TGG + chr1_3:38138443-38138462 None:intergenic 45.0%
GAGGAGAGAAAGAAAGAGAG+TGG + chr1_3:38138502-38138521 None:intergenic 45.0%
AAGTTGTTGGGGGAGAATGA+AGG + chr1_3:38138532-38138551 None:intergenic 45.0%
! CAAACCGGTTCATTTCGGTT+TGG - chr1_3:38138582-38138601 Msa0117400:exon 45.0%
! GGTTTGGTTCAGTTGAACGA+TGG - chr1_3:38138598-38138617 Msa0117400:CDS 45.0%
!! GAATTGAATCGACTCGAACG+TGG + chr1_3:38138630-38138649 None:intergenic 45.0%
CAAGTCAGTGGATAGGGTTT+CGG + chr1_3:38138779-38138798 None:intergenic 45.0%
GTGTTGCAAGTCAGTGGATA+GGG + chr1_3:38138785-38138804 None:intergenic 45.0%
!! TATCCACTGACTTGCAACAC+CGG - chr1_3:38138785-38138804 Msa0117400:intron 45.0%
! CGAGTTTGTGGAATTTTCCC+CGG + chr1_3:38138873-38138892 None:intergenic 45.0%
TGGATGTGTCTCTGATCCAA+CGG - chr1_3:38138934-38138953 Msa0117400:intron 45.0%
! GAATTCGTGTTTTCGACCGT+TGG + chr1_3:38138953-38138972 None:intergenic 45.0%
TCTCATGTTCTGTGAAACGC+AGG - chr1_3:38139080-38139099 Msa0117400:CDS 45.0%
ACCAAACCTTGTTGCAACCT+GGG + chr1_3:38140189-38140208 None:intergenic 45.0%
!! CTGTAGAGCACTTTTCTTGG+TGG + chr1_3:38140411-38140430 None:intergenic 45.0%
!! GTGCTGTAGAGCACTTTTCT+TGG + chr1_3:38140414-38140433 None:intergenic 45.0%
CAAAAATGCCCATGTTGCAG+TGG + chr1_3:38140437-38140456 None:intergenic 45.0%
AACACAGTGTGTGTGATGTG+AGG + chr1_3:38140470-38140489 None:intergenic 45.0%
TCCCCTCTTGTTCCTTTCTT+TGG - chr1_3:38140873-38140892 Msa0117400:intron 45.0%
GCCAAAGAAAGGAACAAGAG+GGG + chr1_3:38140877-38140896 None:intergenic 45.0%
GACTTATTGGAGAGACAGAG+AGG - chr1_3:38140902-38140921 Msa0117400:intron 45.0%
TTATTGGAGAGACAGAGAGG+TGG - chr1_3:38140905-38140924 Msa0117400:intron 45.0%
TATTGGAGAGACAGAGAGGT+GGG - chr1_3:38140906-38140925 Msa0117400:intron 45.0%
ATGTATTCATGGGTCCCCTA+AGG - chr1_3:38141003-38141022 Msa0117400:intron 45.0%
! ATCCATCTTTGGGAAGGTGA+TGG - chr1_3:38141039-38141058 Msa0117400:intron 45.0%
AACCATCACCTTCCCAAAGA+TGG + chr1_3:38141044-38141063 None:intergenic 45.0%
ATAACCCTGAGACCACCAAA+GGG + chr1_3:38141298-38141317 None:intergenic 45.0%
AATAACCCTGAGACCACCAA+AGG + chr1_3:38141299-38141318 None:intergenic 45.0%
!! CTTGTGCGTATTGGTTTGTG+GGG - chr1_3:38141356-38141375 Msa0117400:intron 45.0%
!! ATTGGGGGGTGTTACCAATA+CGG - chr1_3:38141575-38141594 Msa0117400:intron 45.0%
!! ATTGGGGGGTGTTACCAATA+CGG - chr1_3:38141575-38141594 Msa0117400:intron 45.0%
CTAAAGAAGGGCCGTGTTTA+AGG + chr1_3:38141905-38141924 None:intergenic 45.0%
CATGCTGTAGAGATTGCACA+TGG + chr1_3:38142046-38142065 None:intergenic 45.0%
GCAATCTCTACAGCATGAAG+TGG - chr1_3:38142049-38142068 Msa0117400:intron 45.0%
ATCTCTACAGCATGAAGTGG+AGG - chr1_3:38142052-38142071 Msa0117400:intron 45.0%
CTGCAGCTAATATGCTGTCA+AGG + chr1_3:38142681-38142700 None:intergenic 45.0%
CGTCATTCATTCCACTCTGT+AGG - chr1_3:38143093-38143112 Msa0117400:intron 45.0%
TATCATGACAGCCTACAGAG+TGG + chr1_3:38143107-38143126 None:intergenic 45.0%
GCTGTCTGTTTCCATTGTGT+GGG + chr1_3:38143523-38143542 None:intergenic 45.0%
TGCTGTCTGTTTCCATTGTG+TGG + chr1_3:38143524-38143543 None:intergenic 45.0%
GACAGCAATTTCAGCAATCG+TGG - chr1_3:38143537-38143556 Msa0117400:intron 45.0%
ATGCATTCCACCAACCACTT+TGG - chr1_3:38143567-38143586 Msa0117400:intron 45.0%
TGCATTCCACCAACCACTTT+GGG - chr1_3:38143568-38143587 Msa0117400:intron 45.0%
! TTTTCTTCTCTCCCCCAAAG+TGG + chr1_3:38143584-38143603 None:intergenic 45.0%
AAGGATTGGAGTGTGATGTG+AGG - chr1_3:38143748-38143767 Msa0117400:CDS 45.0%
AGGATTGGAGTGTGATGTGA+GGG - chr1_3:38143749-38143768 Msa0117400:CDS 45.0%
TGTCCTCTGTTTGTCAGAGT+CGG - chr1_3:38144104-38144123 Msa0117400:five_prime_UTR 45.0%
!! ATTAAAAATATTAATTGATA+CGG - chr1_3:38139562-38139581 Msa0117400:intron 5.0%
!! GATATATATATATATATATA+TGG - chr1_3:38139664-38139683 Msa0117400:intron 5.0%
!! TATATATATATATATATATG+GGG - chr1_3:38139666-38139685 Msa0117400:intron 5.0%
GGAGAATGAAGGAGGGAAAG+AGG + chr1_3:38138521-38138540 None:intergenic 50.0%
TGTTGGGGGAGAATGAAGGA+GGG + chr1_3:38138528-38138547 None:intergenic 50.0%
TTGTTGGGGGAGAATGAAGG+AGG + chr1_3:38138529-38138548 None:intergenic 50.0%
CGGTGGAAGTTCAAGAAGTG+CGG + chr1_3:38138708-38138727 None:intergenic 50.0%
CTTCACTCGTCGGAGATTAC+CGG - chr1_3:38138746-38138765 Msa0117400:intron 50.0%
! ATAGGGTTTCGGCGGTTTTC+CGG + chr1_3:38138768-38138787 None:intergenic 50.0%
! GGTGTTGCAAGTCAGTGGAT+AGG + chr1_3:38138786-38138805 None:intergenic 50.0%
!! TTACCGGTGTTGCAAGTCAG+TGG + chr1_3:38138791-38138810 None:intergenic 50.0%
! GGAATTTTCCCCGGCGAAAA+CGG + chr1_3:38138864-38138883 None:intergenic 50.0%
CATCCACCTTCTTCAGTCTC+CGG + chr1_3:38138920-38138939 None:intergenic 50.0%
CGAACTCGAACGTGAACGTA+CGG + chr1_3:38139174-38139193 None:intergenic 50.0%
TCCCAGGTTGCAACAAGGTT+TGG - chr1_3:38140185-38140204 Msa0117400:intron 50.0%
GACCAAACCTTGTTGCAACC+TGG + chr1_3:38140190-38140209 None:intergenic 50.0%
TACAGCACCCACTGCAACAT+GGG - chr1_3:38140426-38140445 Msa0117400:intron 50.0%
!! TTTTCCCCTTTGGTGGTCTC+AGG - chr1_3:38141290-38141309 Msa0117400:intron 50.0%
! TTTCCCCTTTGGTGGTCTCA+GGG - chr1_3:38141291-38141310 Msa0117400:intron 50.0%
TAACCCTGAGACCACCAAAG+GGG + chr1_3:38141297-38141316 None:intergenic 50.0%
!! TTGGGGGGTGTTACCAATAC+GGG - chr1_3:38141576-38141595 Msa0117400:intron 50.0%
!! TTGGGGGGTGTTACCAATAC+GGG - chr1_3:38141576-38141595 Msa0117400:intron 50.0%
ACAGATATCAGGGACGGCAT+TGG - chr1_3:38142001-38142020 Msa0117400:intron 50.0%
!!! ATCAGGGACGGCATTGGTTT+TGG - chr1_3:38142007-38142026 Msa0117400:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+TGG - chr1_3:38143059-38143078 Msa0117400:intron 50.0%
TGGCCAGAAATCCCACACAA+TGG - chr1_3:38143509-38143528 Msa0117400:intron 50.0%
GCATTCCACCAACCACTTTG+GGG - chr1_3:38143569-38143588 Msa0117400:intron 50.0%
CATTCCACCAACCACTTTGG+GGG - chr1_3:38143570-38143589 Msa0117400:intron 50.0%
! ATGAAGGGGTACAGAAGCAG+TGG - chr1_3:38144000-38144019 Msa0117400:exon 50.0%
! CAACCGACTCTGACAAACAG+AGG + chr1_3:38144110-38144129 None:intergenic 50.0%
CTCTGTTTGTCAGAGTCGGT+TGG - chr1_3:38144108-38144127 Msa0117400:five_prime_UTR 50.0%
TCAGAGTCGGTTGGAAAACC+TGG - chr1_3:38144117-38144136 Msa0117400:five_prime_UTR 50.0%
ATTCAGCCAACAGGCTAGCA+AGG - chr1_3:38144145-38144164 Msa0117400:five_prime_UTR 50.0%
! CTTCTTCCTTGCTAGCCTGT+TGG + chr1_3:38144154-38144173 None:intergenic 50.0%
TCTTGAACTTCCACCGACGC+AGG - chr1_3:38138712-38138731 Msa0117400:intron 55.0%
CGTCGAGCTTCTTCACTCGT+CGG - chr1_3:38138736-38138755 Msa0117400:intron 55.0%
GTCAGTGGATAGGGTTTCGG+CGG + chr1_3:38138776-38138795 None:intergenic 55.0%
GGCGAAAACGGAGAATCTGG+CGG + chr1_3:38138852-38138871 None:intergenic 55.0%
! GCCAGATTCTCCGTTTTCGC+CGG - chr1_3:38138851-38138870 Msa0117400:intron 55.0%
! CCAGATTCTCCGTTTTCGCC+GGG - chr1_3:38138852-38138871 Msa0117400:intron 55.0%
! CAGATTCTCCGTTTTCGCCG+GGG - chr1_3:38138853-38138872 Msa0117400:intron 55.0%
GAGCTACCGGAGACTGAAGA+AGG - chr1_3:38138911-38138930 Msa0117400:intron 55.0%
CTACCGGAGACTGAAGAAGG+TGG - chr1_3:38138914-38138933 Msa0117400:intron 55.0%
! GTTCACGTTCGAGTTCGACG+AGG - chr1_3:38139177-38139196 Msa0117400:intron 55.0%
CTACAGCACCCACTGCAACA+TGG - chr1_3:38140425-38140444 Msa0117400:intron 55.0%
AGAGACAGAGAGGTGGGTGT+GGG - chr1_3:38140912-38140931 Msa0117400:intron 55.0%
! TAGTTACCAAGGTCTGGGGC+TGG - chr1_3:38143293-38143312 Msa0117400:intron 55.0%
CATATACCAGCCCCAGACCT+TGG + chr1_3:38143302-38143321 None:intergenic 55.0%
! CAAGGTCTGGGGCTGGTATA+TGG - chr1_3:38143300-38143319 Msa0117400:intron 55.0%
CAGCGGGTGAAACTGCGTTA+GGG + chr1_3:38143487-38143506 None:intergenic 55.0%
ACAGCGGGTGAAACTGCGTT+AGG + chr1_3:38143488-38143507 None:intergenic 55.0%
!! TGGGATTTCTGGCCACACAG+CGG + chr1_3:38143504-38143523 None:intergenic 55.0%
CTTCTCTCCCCCAAAGTGGT+TGG + chr1_3:38143580-38143599 None:intergenic 55.0%
GAGCAGGCACAACATTCAGC+AGG - chr1_3:38144074-38144093 Msa0117400:five_prime_UTR 55.0%
AGGAATCATGGCTCCGGCGA+CGG - chr1_3:38138664-38138683 Msa0117400:intron 60.0%
! GAGTTCGCTGTTTCCGTCGC+CGG + chr1_3:38138680-38138699 None:intergenic 60.0%
AGAAGCTCGACGACCTGCGT+CGG + chr1_3:38138728-38138747 None:intergenic 60.0%
TTTCCCTTCCAACGCCGCGT+TGG - chr1_3:38138817-38138836 Msa0117400:intron 60.0%
! CAACCAACGCGGCGTTGGAA+GGG + chr1_3:38138823-38138842 None:intergenic 60.0%
! TCAACCAACGCGGCGTTGGA+AGG + chr1_3:38138824-38138843 None:intergenic 60.0%
CCCGGCGAAAACGGAGAATC+TGG + chr1_3:38138855-38138874 None:intergenic 60.0%
ATCGCCGCCGACGAGAATTC+CGG - chr1_3:38139132-38139151 Msa0117400:CDS 60.0%
GTTGCCGGAATTCTCGTCGG+CGG + chr1_3:38139139-38139158 None:intergenic 60.0%
GCCGACGAGAATTCCGGCAA+CGG - chr1_3:38139138-38139157 Msa0117400:CDS 60.0%
GCCGTTGCCGGAATTCTCGT+CGG + chr1_3:38139142-38139161 None:intergenic 60.0%
CTGTTGCAAGAGCTGGTCCC+AGG - chr1_3:38140169-38140188 Msa0117400:intron 60.0%
GCTGGTCCCAGGTTGCAACA+AGG - chr1_3:38140180-38140199 Msa0117400:intron 60.0%
GAGAGACAGAGAGGTGGGTG+TGG - chr1_3:38140911-38140930 Msa0117400:intron 60.0%
TGGGCGTGTGGGGTGTGAAA+GGG - chr1_3:38140931-38140950 Msa0117400:intron 60.0%
ACGCAGTTTCACCCGCTGTG+TGG - chr1_3:38143489-38143508 Msa0117400:CDS 60.0%
!! GGGATTTCTGGCCACACAGC+GGG + chr1_3:38143503-38143522 None:intergenic 60.0%
CTCTCCCCCAAAGTGGTTGG+TGG + chr1_3:38143577-38143596 None:intergenic 60.0%
GCGTTCAACCAACGCGGCGT+TGG + chr1_3:38138828-38138847 None:intergenic 65.0%
CGAGAATTCCGGCAACGGCG+AGG - chr1_3:38139143-38139162 Msa0117400:CDS 65.0%
AGAGGTGGGTGTGGGCGTGT+GGG - chr1_3:38140920-38140939 Msa0117400:intron 65.0%
GTGGGCGTGTGGGGTGTGAA+AGG - chr1_3:38140930-38140949 Msa0117400:intron 65.0%
AGCTCGACGACCTGCGTCGG+TGG + chr1_3:38138725-38138744 None:intergenic 70.0%
GGCGGCGCGTTCAACCAACG+CGG + chr1_3:38138834-38138853 None:intergenic 70.0%
CGGAAGCTCCTCGCCGTTGC+CGG + chr1_3:38139154-38139173 None:intergenic 70.0%
GAGAGGTGGGTGTGGGCGTG+TGG - chr1_3:38140919-38140938 Msa0117400:intron 70.0%
GAGGTGGGTGTGGGCGTGTG+GGG - chr1_3:38140921-38140940 Msa0117400:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 38138251 38144371 38138251 ID=Msa0117400;Name=Msa0117400
chr1_3 mRNA 38138251 38144371 38138251 ID=Msa0117400-mRNA-1;Parent=Msa0117400;Name=Msa0117400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=366|0.83|0.85|1|1|1|7|333|339
chr1_3 exon 38138251 38138656 38138251 ID=Msa0117400-mRNA-1:exon:11982;Parent=Msa0117400-mRNA-1
chr1_3 exon 38138947 38139164 38138947 ID=Msa0117400-mRNA-1:exon:11981;Parent=Msa0117400-mRNA-1
chr1_3 exon 38139920 38139991 38139920 ID=Msa0117400-mRNA-1:exon:11980;Parent=Msa0117400-mRNA-1
chr1_3 exon 38140549 38140617 38140549 ID=Msa0117400-mRNA-1:exon:11979;Parent=Msa0117400-mRNA-1
chr1_3 exon 38142421 38142486 38142421 ID=Msa0117400-mRNA-1:exon:11978;Parent=Msa0117400-mRNA-1
chr1_3 exon 38143389 38143520 38143389 ID=Msa0117400-mRNA-1:exon:11977;Parent=Msa0117400-mRNA-1
chr1_3 exon 38143616 38144371 38143616 ID=Msa0117400-mRNA-1:exon:11976;Parent=Msa0117400-mRNA-1
chr1_3 five_prime_UTR 38144006 38144371 38144006 ID=Msa0117400-mRNA-1:five_prime_utr;Parent=Msa0117400-mRNA-1
chr1_3 CDS 38143616 38144005 38143616 ID=Msa0117400-mRNA-1:cds;Parent=Msa0117400-mRNA-1
chr1_3 CDS 38143389 38143520 38143389 ID=Msa0117400-mRNA-1:cds;Parent=Msa0117400-mRNA-1
chr1_3 CDS 38142421 38142486 38142421 ID=Msa0117400-mRNA-1:cds;Parent=Msa0117400-mRNA-1
chr1_3 CDS 38140549 38140617 38140549 ID=Msa0117400-mRNA-1:cds;Parent=Msa0117400-mRNA-1
chr1_3 CDS 38139920 38139991 38139920 ID=Msa0117400-mRNA-1:cds;Parent=Msa0117400-mRNA-1
chr1_3 CDS 38138947 38139164 38138947 ID=Msa0117400-mRNA-1:cds;Parent=Msa0117400-mRNA-1
chr1_3 CDS 38138584 38138656 38138584 ID=Msa0117400-mRNA-1:cds;Parent=Msa0117400-mRNA-1
chr1_3 three_prime_UTR 38138251 38138583 38138251 ID=Msa0117400-mRNA-1:three_prime_utr;Parent=Msa0117400-mRNA-1
Gene Sequence

>Msa0117400

ATGGAACAAACCACGTTCGAGTCGATTCAATTCAACGAAGAAATTCAAGGAATCATGGCTCCGGCGACGGAAACAGCGAACTCTTTCACCGCACTTCTTGAACTTCCACCGACGCAGGTCGTCGAGCTTCTTCACTCGTCGGAGATTACCGGAAAACCGCCGAAACCCTATCCACTGACTTGCAACACCGGTAATTTAACTTTCCCTTCCAACGCCGCGTTGGTTGAACGCGCCGCCAGATTCTCCGTTTTCGCCGGGGAAAATTCCACAAACTCGACTAACTTAGTAAAGGATGAGCTACCGGAGACTGAAGAAGGTGGATGTGTCTCTGATCCAACGGTCGAAAACACGAATTCCAAGAGTGCAAAAAGGAAGGAACGAGAAAAGAAGGTGAAATTGTCGTCTAAGAAGAGTAAGAGTATCGCCGCCGACGAGAATTCCGGCAACGGCGAGGAGCTTCCGTACGTTCACGTTCGAGTTCGACGAGGTCAAGCTACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTGCAAGAGCTGGTCCCAGGTTGCAACAAGATATCAGGGACGGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAATAATTGATTTCAACCTTGACAGCATATTAGCTGCAGAAGGAATGTCTCTCATGGACAGTAACTTCCCTAACGCAGTTTCACCCGCTGTGTGGCCAGAAATCCCACACAATGGAAACAGACAGCAATTTCAGCAATCGTGGCAATCTGATGCATTCCACCAACCACTTTGGGGGAGAGAAGAAAACAACCCTAATTTCATGACCCCAGAAAACTCACTTCTAAGTTATGACTCATCGGCAAATTCAGGTAGATTAGATATCTCTGCACTCAAATCAGATGAAGATGGAGCTATGAAGGGGTACAGAAGCAGTGGTAATAGTAGCAATTAG
Protein sequence

>Msa0117400

MEQTTFESIQFNEEIQGIMAPATETANSFTALLELPPTQVVELLHSSEITGKPPKPYPLTCNTGNLTFPSNAALVERAARFSVFAGENSTNSTNLVKDELPETEEGGCVSDPTVENTNSKSAKRKEREKKVKLSSKKSKSIAADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDFNLDSILAAEGMSLMDSNFPNAVSPAVWPEIPHNGNRQQFQQSWQSDAFHQPLWGREENNPNFMTPENSLLSYDSSANSGRLDISALKSDEDGAMKGYRSSGNSSN*