AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833150 MtrunA17_Chr5g0398431 97.183 497 13 1 1 497 1 496 0.0 1002
Msa0833150 MtrunA17_Chr6g0475681 54.200 500 222 4 1 495 30 527 0.0 563
Msa0833150 MtrunA17_Chr6g0488041 43.521 409 223 3 85 489 26 430 6.51e-132 389
Msa0833150 MtrunA17_Chr8g0389311 42.752 407 223 3 85 489 24 422 6.18e-129 382
Msa0833150 MtrunA17_Chr8g0389321 42.752 407 223 3 85 489 24 422 6.18e-129 382
Msa0833150 MtrunA17_Chr4g0054371 41.687 415 232 3 85 489 16 430 1.06e-126 377
Msa0833150 MtrunA17_Chr3g0135251 43.237 414 229 3 85 493 14 426 7.62e-125 373
Msa0833150 MtrunA17_Chr5g0400831 41.546 414 233 4 85 489 16 429 5.13e-123 368
Msa0833150 MtrunA17_Chr8g0387481 40.786 407 238 1 86 489 25 431 1.83e-121 364
Msa0833150 MtrunA17_Chr8g0348351 39.506 405 245 0 85 489 23 427 2.82e-117 353
Msa0833150 MtrunA17_Chr7g0248681 39.655 406 244 1 85 489 23 428 2.69e-113 343
Msa0833150 MtrunA17_Chr8g0345201 21.622 333 238 11 179 489 180 511 1.65e-13 72.8
Msa0833150 MtrunA17_Chr5g0412871 25.175 143 104 3 179 319 129 270 1.65e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833150 AT1G62960.1 55.639 532 189 10 1 495 31 552 0.0 577
Msa0833150 AT5G51690.1 52.305 499 227 5 1 495 1 492 0.0 555
Msa0833150 AT5G51690.2 53.911 358 162 1 141 495 12 369 3.76e-148 429
Msa0833150 AT4G37770.1 44.844 417 226 1 85 497 16 432 7.02e-133 393
Msa0833150 AT4G26200.1 43.627 408 227 2 85 489 30 437 4.64e-126 375
Msa0833150 AT3G49700.1 43.510 416 231 1 85 496 16 431 3.05e-123 369
Msa0833150 AT5G65800.1 42.788 416 234 2 85 496 16 431 2.12e-121 364
Msa0833150 AT2G22810.1 42.054 409 232 3 86 489 17 425 1.55e-120 362
Msa0833150 AT4G11280.1 40.244 410 243 2 85 493 27 435 2.03e-119 360
Msa0833150 AT4G08040.1 40.686 408 237 3 85 489 14 419 1.87e-117 353
Msa0833150 AT3G61510.1 41.422 408 229 4 86 489 24 425 2.00e-115 349
Msa0833150 AT1G01480.1 37.164 409 253 2 85 489 24 432 9.15e-111 337
Msa0833150 AT1G01480.2 38.050 318 193 2 176 489 9 326 2.02e-87 274
Msa0833150 AT1G72330.1 20.659 334 240 10 179 489 196 527 2.37e-16 82.0
Msa0833150 AT1G72330.3 20.173 347 239 10 179 489 196 540 6.76e-15 77.8
Msa0833150 AT1G17290.1 20.120 333 243 10 179 489 199 530 1.27e-14 76.6
Msa0833150 AT1G23310.2 25.175 143 104 3 179 319 129 270 3.55e-12 68.9
Msa0833150 AT1G23310.1 25.175 143 104 3 179 319 129 270 3.87e-12 68.9
Msa0833150 AT1G72330.2 21.795 156 119 3 179 332 196 350 1.82e-11 66.6
Msa0833150 AT5G36160.1 25.000 184 124 4 164 347 93 262 9.57e-11 64.3

Find 386 sgRNAs with CRISPR-Local

Find 510 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTCAGGTTATGAAATT+AGG 0.120389 5_4:-6338831 Msa0833160:CDS
AGGAAAGTTGCTACCTATTT+TGG 0.124064 5_4:-6339114 Msa0833160:CDS
CCGGATTGACACTGGTTATT+AGG 0.141063 5_4:-6338629 Msa0833160:three_prime_UTR
ACCTTGAGTTCATGGGTTTC+TGG 0.142223 5_4:-6341336 Msa0833160:CDS
ATATTGTCTTTATTCGTTAA+AGG 0.163731 5_4:-6338413 Msa0833160:three_prime_UTR
AGTCTAATGCATTTGGATTT+TGG 0.170035 5_4:-6340757 Msa0833160:CDS
AACCGCATCCGTTCATATTT+CGG 0.176135 5_4:+6335639 Msa0833150:CDS
TGGTGACCATCATGAGTATT+AGG 0.199260 5_4:-6339763 Msa0833160:CDS
GCCATGCTTGGTCTTCTTAA+AGG 0.199453 5_4:+6338786 Msa0833150:three_prime_UTR
ATAATCTCTAATGAAATATT+TGG 0.209776 5_4:+6337572 Msa0833150:CDS
AGAGTATGTTAGAGGATTTA+AGG 0.210033 5_4:+6339177 Msa0833150:three_prime_UTR
ACCGCATCCGTTCATATTTC+GGG 0.225078 5_4:+6335640 Msa0833150:CDS
CATTGAACTGCTTGAATTGC+TGG 0.225883 5_4:-6340404 Msa0833160:CDS
GGACTATTGGTTATCAAATT+AGG 0.226861 5_4:-6340469 Msa0833160:CDS
TTGAGGATATTGACATTGTT+TGG 0.227211 5_4:-6341189 Msa0833160:CDS
GAATCATCAAATGTTATAAT+TGG 0.227804 5_4:-6339674 Msa0833160:CDS
GAGGAATTCGAAAATGAAAT+TGG 0.228338 5_4:-6339461 Msa0833160:CDS
GCTGCAGCTGTGATTCTAAC+TGG 0.231701 5_4:-6339794 Msa0833160:CDS
TTGTCCTTCAAACCCATTAT+AGG 0.232527 5_4:+6340663 Msa0833150:three_prime_UTR
CCTCTACTTGTGCTGGTTCC+AGG 0.236355 5_4:+6339305 Msa0833150:three_prime_UTR
ATTGCAACAATACAGCATTT+TGG 0.237823 5_4:-6339956 Msa0833160:CDS
GCTTCATTCTCTGCTTGTTT+TGG 0.238630 5_4:-6341440 Msa0833160:CDS
CGGATTGACACTGGTTATTA+GGG 0.238703 5_4:-6338628 Msa0833160:three_prime_UTR
AGTGTGGAAGAGCACGTTTC+TGG 0.238811 5_4:-6340787 Msa0833160:CDS
TATTTCAATATATCCTATAA+TGG 0.241003 5_4:-6340676 Msa0833160:CDS
ATCAATTGGATATTGTGTTT+TGG 0.241315 5_4:-6335246 None:intergenic
TGATGCTTCAGGGAATAATT+TGG 0.244911 5_4:-6340599 Msa0833160:CDS
ATTTGTAACATTGCAATAAA+AGG 0.246407 5_4:-6338541 Msa0833160:three_prime_UTR
AATAACTACTCACGGTGTTT+TGG 0.250440 5_4:-6335780 None:intergenic
CAGTTTCGGTGTCATTCTTT+TGG 0.253403 5_4:-6338997 Msa0833160:CDS
TTGCAGTTCCAAGTGCAATT+TGG 0.264467 5_4:+6339252 Msa0833150:three_prime_UTR
GAAGCCAAGTTATCTGATTA+TGG 0.267090 5_4:-6339140 Msa0833160:CDS
GAATTTCGCCGATGAGGTTT+AGG 0.273951 5_4:+6340371 Msa0833150:three_prime_UTR
AGGAGAGTCAGTTGTGATTA+TGG 0.276042 5_4:-6335674 None:intergenic
TGCTGTATTGTTGCAATATC+AGG 0.279650 5_4:+6339962 Msa0833150:three_prime_UTR
TTGTTTAAACCAACGTAATA+AGG 0.283341 5_4:-6335694 None:intergenic
TTAGTGGTCTTTGATGCTTC+AGG 0.294749 5_4:-6340610 Msa0833160:CDS
GCAAAAGCCACCACTGCTTC+TGG 0.296696 5_4:-6337936 Msa0833160:three_prime_UTR
TGTTGAGAATGAATTGATTC+AGG 0.298655 5_4:-6338844 Msa0833160:CDS
AAGTTATCTGATTATGGATT+AGG 0.300227 5_4:-6339134 Msa0833160:CDS
AAACCTCATCGGCGAAATTC+CGG 0.301654 5_4:-6340368 Msa0833160:CDS
CGCAATTCTTGAATATCAAC+TGG 0.303538 5_4:+6340493 Msa0833150:three_prime_UTR
TTCATCTAAGAGTATGTTAG+AGG 0.310624 5_4:+6339169 Msa0833150:three_prime_UTR
CTGAGAAGCAATGCCTTATC+AGG 0.317990 5_4:-6340811 Msa0833160:CDS
CAGAGTTGGCTCAAAGCTTT+AGG 0.319425 5_4:-6339043 Msa0833160:CDS
TACCATCAAAATATGAAGAT+TGG 0.320938 5_4:-6339625 Msa0833160:CDS
GGTAGAAGAAGTAGATATAA+TGG 0.325377 5_4:-6341754 None:intergenic
TGGTTTCATGTCTCAAGTTT+TGG 0.325778 5_4:+6337093 Msa0833150:CDS
AAATCTAGAAAACGAATATT+AGG 0.330922 5_4:+6341051 Msa0833150:three_prime_UTR
TGGTTCAATTCCTGTGTCTT+TGG 0.333500 5_4:-6340935 Msa0833160:CDS
CTTTCTCATAACAATCTTGT+TGG 0.337524 5_4:-6340955 Msa0833160:CDS
TTTGACTACGTTTCTTTGCT+TGG 0.342076 5_4:-6337442 None:intergenic
TCAAGAATTGCGAGGACTAT+TGG 0.342192 5_4:-6340482 Msa0833160:CDS
CTTAATAATTACATTCTTCA+AGG 0.343576 5_4:-6338669 Msa0833160:three_prime_UTR
GTAAGAAGTTTGTTGGAAAC+TGG 0.343906 5_4:-6338906 Msa0833160:CDS
CAAGGAGTTGTCCAAGGAAC+AGG 0.345132 5_4:+6335457 Msa0833150:CDS
AGATACCTTCAGCTTTGTTT+AGG 0.347911 5_4:-6341005 Msa0833160:CDS
TGATTCAGGTTATGAAATTA+GGG 0.348840 5_4:-6338830 Msa0833160:CDS
AATGGGTAGTAGTAGTAGTT+TGG 0.349669 5_4:-6341736 None:intergenic
ATGAATTATGTGATAGATCT+AGG 0.350426 5_4:+6340071 Msa0833150:three_prime_UTR
CTAACTAACTCTTTATCAAT+TGG 0.350981 5_4:-6335260 None:intergenic
CTAGGAATTGGATCCTTGAT+AGG 0.354424 5_4:+6340089 Msa0833150:three_prime_UTR
ACCGCAGAGAAAAGGATTAT+TGG 0.354473 5_4:+6339919 Msa0833150:three_prime_UTR
TGCTACTTACCATGGATTCA+TGG 0.356282 5_4:+6336122 Msa0833150:CDS
GGGAATTATATTGGTCTAGA+AGG 0.357515 5_4:-6339277 Msa0833160:CDS
GATTCTAACTGGGGTTTGTT+TGG 0.358415 5_4:-6339783 Msa0833160:CDS
AATCCAAATGCATTAGACTA+TGG 0.359221 5_4:+6340761 Msa0833150:three_prime_UTR
TCACTACATGCAGTGATATC+AGG 0.359968 5_4:+6340637 Msa0833150:three_prime_UTR
AGAAACACTACTTGATCTTC+TGG 0.360922 5_4:+6337523 Msa0833150:CDS
ATTTCAATATATCCTATAAT+GGG 0.362537 5_4:-6340675 Msa0833160:CDS
AGTTCATATAGTGTTTGATT+TGG 0.363982 5_4:+6337670 Msa0833150:CDS
ATGCCATAGTCTAATGCATT+TGG 0.366711 5_4:-6340764 Msa0833160:CDS
TGTGAAGGGTTGAAGAAAAC+TGG 0.369060 5_4:-6337121 None:intergenic
CCTATTGCCTCTACTTGTGC+TGG 0.369621 5_4:+6339298 Msa0833150:three_prime_UTR
ATTATTTCTGCAAATTTCAT+TGG 0.370391 5_4:+6338191 Msa0833150:three_prime_UTR
CAACTAAATTACAGTGTTGA+AGG 0.372986 5_4:+6339426 Msa0833150:three_prime_UTR
AGCTTCTGCCTAGCAGATAA+TGG 0.376523 5_4:+6337187 Msa0833150:CDS
CACACAATACCTTGAGTTCA+TGG 0.376536 5_4:-6341344 Msa0833160:CDS
TAGTAATAGATTTACTGATT+TGG 0.380646 5_4:-6340734 Msa0833160:CDS
AAATGTTATAATTGGAAAGT+TGG 0.382735 5_4:-6339666 Msa0833160:CDS
TGAGGATATTGACATTGTTT+GGG 0.383055 5_4:-6341188 Msa0833160:CDS
AGTGAAGAAGCTTGAGACTT+TGG 0.383510 5_4:-6339501 Msa0833160:CDS
AGGATTATGAATCCGATGAT+AGG 0.384138 5_4:-6335731 None:intergenic
ATCCACAACATTCTCATTAT+AGG 0.385218 5_4:-6337738 None:intergenic
TTGTCAGAGTTTGTTTCAAA+TGG 0.386132 5_4:-6339362 Msa0833160:CDS
GTGAAGAAGCTTGAGACTTT+GGG 0.386866 5_4:-6339500 Msa0833160:CDS
GTTCCCACGCCTCATAGTCC+TGG 0.388688 5_4:+6337223 Msa0833150:CDS
TGAATATGTAAGAAGTTTGT+TGG 0.390348 5_4:-6338913 Msa0833160:CDS
GCTTTGATGAGGCCGTAAAA+TGG 0.391674 5_4:+6337333 Msa0833150:intron
TTTCTTCAACCCTTCACATA+TGG 0.391679 5_4:+6337126 Msa0833150:CDS
AGACCGAAATTATCCAAAAT+AGG 0.391697 5_4:+6339101 Msa0833150:three_prime_UTR
GGAATGTCACATAGTCTAGA+AGG 0.392031 5_4:+6340853 Msa0833150:three_prime_UTR
GTGTTGTCACCAGCACTCTC+AGG 0.393068 5_4:-6341222 Msa0833160:CDS
GAACTTAAAGCTCTTGTCCT+TGG 0.394546 5_4:-6340542 Msa0833160:CDS
AAGTGTGATGTTTACAGTTT+CGG 0.395564 5_4:-6339011 Msa0833160:CDS
CCAGCACAAGTAGAGGCAAT+AGG 0.397401 5_4:-6339298 Msa0833160:CDS
GGTGACCATCATGAGTATTA+GGG 0.397988 5_4:-6339762 Msa0833160:CDS
CTACATGGGCTTGGATATCC+TGG 0.398085 5_4:-6339323 Msa0833160:CDS
AATGGAAGCGCTGCTATACT+AGG 0.401042 5_4:+6336060 Msa0833150:CDS
GGTTGTTGGAAGGAGGAGAT+TGG 0.401069 5_4:-6335555 None:intergenic
CTTGACAAGGAGTCGTTGAT+AGG 0.401382 5_4:-6339581 Msa0833160:CDS
GGTTCAATCCCTCCTTCACT+TGG 0.404422 5_4:-6340043 Msa0833160:CDS
GTGAATTGCTCTAACCTTGA+AGG 0.406571 5_4:-6340913 Msa0833160:CDS
GAGGCCGTAAAATGGCGATC+TGG 0.407730 5_4:+6337341 Msa0833150:CDS
TCTTTGCTTGGTTGAAAGCT+TGG 0.408690 5_4:-6337430 None:intergenic
ACCATCAAAATATGAAGATT+GGG 0.409063 5_4:-6339624 Msa0833160:CDS
TTCAGCTCCAATGCGTTATC+CGG 0.410427 5_4:-6341102 Msa0833160:CDS
GGCAAATCACCAATGAAATC+CGG 0.411470 5_4:+6341072 Msa0833150:three_prime_UTR
TATGTGATAGATCTAGGAAT+TGG 0.414284 5_4:+6340077 Msa0833150:three_prime_UTR
CTCCTTGTCAAGCAATGCTT+TGG 0.420567 5_4:+6339592 Msa0833150:three_prime_UTR
TATCAAAGAATGGCTTCAAT+GGG 0.420659 5_4:-6341029 Msa0833160:CDS
GTAATAAGCAATTGCTGAGT+TGG 0.421065 5_4:-6337800 Msa0833160:three_prime_UTR
TTCCAACAACCTTCCGCCTC+CGG 0.421274 5_4:+6335567 Msa0833150:CDS
TGCGTTATCCGGTTCGATCC+CGG 0.422061 5_4:-6341091 Msa0833160:CDS
CCTGATGGTGTTATTCAGCT+TGG 0.423048 5_4:+6335751 Msa0833150:CDS
TTTCTAGATTTATCAAAGAA+TGG 0.423501 5_4:-6341039 Msa0833160:CDS
GGTTCGATCCCGGATTTCAT+TGG 0.425083 5_4:-6341081 Msa0833160:CDS
TGTAATTTAGTTGCATTTCA+AGG 0.425710 5_4:-6339416 Msa0833160:CDS
CTGCAGCTGTGATTCTAACT+GGG 0.426250 5_4:-6339793 Msa0833160:CDS
CTCCGGAGGCGGAAGGTTGT+TGG 0.429612 5_4:-6335569 None:intergenic
GTGGAAGGATTAGAGCAGTT+GGG 0.430008 5_4:+6337902 Msa0833150:CDS
ATTCGTTCCTATAGTGAAAA+GGG 0.430876 5_4:+6337983 Msa0833150:CDS
GTAGAAGAAGTAGATATAAT+GGG 0.433070 5_4:-6341753 None:intergenic
GATAGGTTTCCTAGGCTTGA+AGG 0.434249 5_4:+6340106 Msa0833150:three_prime_UTR
AATATACAAAACAAATAAAC+AGG 0.435213 5_4:-6338266 Msa0833160:three_prime_UTR
CATTCGTTCCTATAGTGAAA+AGG 0.435473 5_4:+6337982 Msa0833150:CDS
AGGATTTAAGGTTGAGGTGA+AGG 0.436093 5_4:+6339189 Msa0833150:three_prime_UTR
CGATTTAATAATTTGCCAGC+AGG 0.436573 5_4:-6337500 None:intergenic
TATGATAATCTACATGGGCT+TGG 0.439061 5_4:-6339332 Msa0833160:CDS
AATGAAATCCGGGATCGAAC+CGG 0.440617 5_4:+6341083 Msa0833150:three_prime_UTR
CCTAATAACCAGTGTCAATC+CGG 0.442095 5_4:+6338629 Msa0833150:three_prime_UTR
CTCTCATTCAACAATCTCTC+TGG 0.443432 5_4:-6339992 Msa0833160:CDS
TTGTAGAAAGAATTGTGCTT+TGG 0.445315 5_4:-6341263 Msa0833160:CDS
TTATCAAAGAATGGCTTCAA+TGG 0.446628 5_4:-6341030 Msa0833160:CDS
GAGGCAATAGGGAATTATAT+TGG 0.449063 5_4:-6339286 Msa0833160:CDS
TAGTGGTCTTTGATGCTTCA+GGG 0.450179 5_4:-6340609 Msa0833160:CDS
GGATCCTTGATAGGTTTCCT+AGG 0.450269 5_4:+6340098 Msa0833150:three_prime_UTR
AAGGGATGCTTCCCTTGAGC+TGG 0.451610 5_4:+6340125 Msa0833150:three_prime_UTR
TCCAACAGCATTGTGGAACT+TGG 0.452103 5_4:+6339076 Msa0833150:three_prime_UTR
AGGCCGTAAAATGGCGATCT+GGG 0.452160 5_4:+6337342 Msa0833150:CDS
TTGGCTCCATTCAGCATCCT+AGG 0.453075 5_4:-6340715 Msa0833160:CDS
AAACCTTGTATCTGAAATCA+TGG 0.453144 5_4:-6337822 Msa0833160:three_prime_UTR
TTGCTCAAGAGGACGGGTAT+TGG 0.453241 5_4:+6338287 Msa0833150:three_prime_UTR
CATGTAGCATTCTCATTAAG+AGG 0.453827 5_4:+6341632 Msa0833150:three_prime_UTR
GAGAGAGAGCGTGACAAGGC+GGG 0.454319 5_4:-6335598 None:intergenic
ATCCGTTCATATTTCGGGTC+GGG 0.455221 5_4:+6335645 Msa0833150:CDS
CTAATCATACAGGTTGTGGC+TGG 0.455743 5_4:+6337073 Msa0833150:intron
TTGCATTTCAAGGTTACTAC+TGG 0.456933 5_4:-6339406 Msa0833160:CDS
CTTTGGAACACTAGCTTAGG+TGG 0.457740 5_4:-6341246 Msa0833160:CDS
ATATCCTATAATGGGTTTGA+AGG 0.458005 5_4:-6340667 Msa0833160:CDS
TGAGACGTCACCTTCAAAAT+CGG 0.458727 5_4:+6339529 Msa0833150:three_prime_UTR
CCTGTAGTAATGGAACGAAT+CGG 0.459030 5_4:+6338133 Msa0833150:CDS
GGTGTTGAGATAGGAATAGA+AGG 0.460500 5_4:-6335224 None:intergenic
GTCTTCCCAGGAGGTGAAGA+TGG 0.462324 5_4:+6339854 Msa0833150:three_prime_UTR
AAATATGAAGATTGGGAGGC+AGG 0.463881 5_4:-6339617 Msa0833160:CDS
CTCTTCCACACTACCTGATA+AGG 0.465052 5_4:+6340798 Msa0833150:three_prime_UTR
GCGACAATCATGGTGGAGAT+AGG 0.465629 5_4:+6339220 Msa0833150:three_prime_UTR
CAGCTTCAAACTGCTTTGAC+AGG 0.467394 5_4:-6338881 Msa0833160:CDS
CTGAGGCAACCACAATTTGA+TGG 0.468751 5_4:-6336087 None:intergenic
CTGTAGTAATGGAACGAATC+GGG 0.469670 5_4:+6338134 Msa0833150:CDS
ACGAATAAAGACAATATTGA+GGG 0.469841 5_4:+6338419 Msa0833150:three_prime_UTR
GGAATGATTCCTGAGGGGTT+TGG 0.470126 5_4:-6340430 Msa0833160:CDS
AGAGAGAGCGTGACAAGGCG+GGG 0.470507 5_4:-6335597 None:intergenic
GTGAGTTGGCAATGGTTTAG+TGG 0.472654 5_4:+6335406 Msa0833150:five_prime_UTR
TGAAGATCAGCATAATCATC+TGG 0.472985 5_4:+6341144 Msa0833150:three_prime_UTR
GCAGAAGCTTAGAATTTCAA+TGG 0.475169 5_4:-6337173 None:intergenic
AGATCGCCATCTTCACCTCC+TGG 0.478343 5_4:-6339860 Msa0833160:CDS
CATCAGTTCATGAATGTACT+CGG 0.479838 5_4:-6338353 Msa0833160:three_prime_UTR
CCGATTCGTTCCATTACTAC+AGG 0.480415 5_4:-6338133 Msa0833160:three_prime_UTR
TGTGAGCATGGCAGAAATCA+TGG 0.480730 5_4:+6337622 Msa0833150:CDS
AGGAATTCGAAAATGAAATT+GGG 0.482389 5_4:-6339460 Msa0833160:CDS
TAATCCATAATCAGATAACT+TGG 0.482467 5_4:+6339136 Msa0833150:three_prime_UTR
GTCACGCTCTCTCTCAGCTC+GGG 0.483427 5_4:+6335606 Msa0833150:CDS
GTGCTTTGGAACACTAGCTT+AGG 0.483599 5_4:-6341249 Msa0833160:CDS
AAAGGAGCACCGCAGAGAAA+AGG 0.484488 5_4:+6339911 Msa0833150:three_prime_UTR
AAGCTTAGAATTTCAATGGC+AGG 0.484745 5_4:-6337169 None:intergenic
GAGAGAGCGTGACAAGGCGG+GGG 0.484996 5_4:-6335596 None:intergenic
CAGCACAAGTAGAGGCAATA+GGG 0.485237 5_4:-6339297 Msa0833160:CDS
GATATCACTTGCTCTGCAAA+CGG 0.488800 5_4:-6339887 Msa0833160:CDS
AAAATCTCTTTCTCAGTAGC+TGG 0.489093 5_4:+6341399 Msa0833150:three_prime_UTR
TCACATATGGTGCTAACTGC+AGG 0.490346 5_4:+6337139 Msa0833150:CDS
CCAAGCTGAATAACACCATC+AGG 0.491931 5_4:-6335751 None:intergenic
GGTCTATGTGGAAGGAGATC+CGG 0.495215 5_4:-6338648 Msa0833160:three_prime_UTR
TTGATAGGAGGCGGATCGAT+TGG 0.497591 5_4:-6339566 Msa0833160:CDS
ATCTCTAATGAAATATTTGG+AGG 0.499661 5_4:+6337575 Msa0833150:CDS
AAATGATATTCCTGTAGTAA+TGG 0.500041 5_4:+6338123 Msa0833150:CDS
ATAGGTTTCCTAGGCTTGAA+GGG 0.500457 5_4:+6340107 Msa0833150:three_prime_UTR
GTGTAGATTTGATTGAAGAA+TGG 0.500474 5_4:+6336028 Msa0833150:CDS
TGTCACGCTCTCTCTCAGCT+CGG 0.501102 5_4:+6335605 Msa0833150:CDS
TGTTAGAGGATTTAAGGTTG+AGG 0.502028 5_4:+6339183 Msa0833150:three_prime_UTR
TGTGGAAGGATTAGAGCAGT+TGG 0.502576 5_4:+6337901 Msa0833150:CDS
CTCTTCAACCCTGAGAGTGC+TGG 0.504058 5_4:+6341213 Msa0833150:three_prime_UTR
TGCAGTCCTAGGATGCTGAA+TGG 0.504782 5_4:+6340709 Msa0833150:three_prime_UTR
AACGAATAAAGACAATATTG+AGG 0.504860 5_4:+6338418 Msa0833150:three_prime_UTR
GTCTCGGACTAATCAAAGTT+GGG 0.505170 5_4:-6335326 None:intergenic
TGGAGTTGAATAAGCTGAAA+GGG 0.505327 5_4:-6340522 Msa0833160:CDS
TTGCAATTTGTTATGTCAGC+CGG 0.506519 5_4:+6340349 Msa0833150:three_prime_UTR
TTGAGTTCATGGGTTTCTGG+TGG 0.509741 5_4:-6341333 Msa0833160:CDS
GGAAGCATCCCTTCAAGCCT+AGG 0.509937 5_4:-6340115 Msa0833160:CDS
AATTTGCCAGCAGGGTTCGA+AGG 0.512224 5_4:-6337491 None:intergenic
AGAGAGCGTGACAAGGCGGG+GGG 0.512472 5_4:-6335595 None:intergenic
TGTATATTGCTCAAGAGGAC+GGG 0.512616 5_4:+6338281 Msa0833150:three_prime_UTR
ATGTATAATGCATTTGTGGA+AGG 0.513384 5_4:+6337887 Msa0833150:CDS
GACTATGAGGCGTGGGAACA+AGG 0.514495 5_4:-6337219 None:intergenic
ATGCATTTCCATTATCTGCT+AGG 0.514780 5_4:-6337195 None:intergenic
CTCACCGTCTAAGTTATTAC+CGG 0.517112 5_4:+6340204 Msa0833150:three_prime_UTR
AGCTTAGAATTTCAATGGCA+GGG 0.517674 5_4:-6337168 None:intergenic
TGAACAATCTCAGCCATGCT+TGG 0.519126 5_4:+6338774 Msa0833150:three_prime_UTR
AAGCATGGCTGAGATTGTTC+AGG 0.520205 5_4:-6338772 Msa0833160:CDS
CTGAGAAGTTTAGTCTTCCC+AGG 0.520517 5_4:+6339842 Msa0833150:three_prime_UTR
ACCAAGTTCCACAATGCTGT+TGG 0.520538 5_4:-6339077 Msa0833160:CDS
AAAGGATTATTGGAAAATGC+AGG 0.521378 5_4:+6339929 Msa0833150:three_prime_UTR
AGCTAAGATCAATGTTACTC+CGG 0.521490 5_4:+6338039 Msa0833150:CDS
AGTCTCGGACTAATCAAAGT+TGG 0.521748 5_4:-6335327 None:intergenic
TTTGGAACACTAGCTTAGGT+GGG 0.522617 5_4:-6341245 Msa0833160:CDS
TACATTCTTCAAGGTCTATG+TGG 0.523180 5_4:-6338660 Msa0833160:three_prime_UTR
AGATTCCGATCCATCTCTGA+TGG 0.523428 5_4:+6338740 Msa0833150:three_prime_UTR
TTGTATATTGCTCAAGAGGA+CGG 0.524294 5_4:+6338280 Msa0833150:three_prime_UTR
TGAGTTGGCAATGGTTTAGT+GGG 0.524528 5_4:+6335407 Msa0833150:five_prime_UTR
GGATCGGAGGGCGACAATCA+TGG 0.524742 5_4:+6339210 Msa0833150:three_prime_UTR
TCAAACCCTTCGAACCCTGC+TGG 0.524906 5_4:+6337485 Msa0833150:CDS
CTAAAGCTTTGAGCCAACTC+TGG 0.527377 5_4:+6339044 Msa0833150:three_prime_UTR
TGCATGTAGTGAGAGATTAG+TGG 0.529824 5_4:-6340626 Msa0833160:CDS
TCTCTCTCAGCTCGGGTCAG+AGG 0.530882 5_4:+6335613 Msa0833150:CDS
GGATTATGAATCCGATGATA+GGG 0.531594 5_4:-6335730 None:intergenic
GACTGTTACCCAGGACTATG+AGG 0.532638 5_4:-6337232 None:intergenic
CTTCAGGGAATAATTTGGAT+GGG 0.533396 5_4:-6340594 Msa0833160:CDS
TTACCATGATTTCAGATACA+AGG 0.534016 5_4:+6337819 Msa0833150:CDS
CAAGCCTAGGAAACCTATCA+AGG 0.534130 5_4:-6340102 Msa0833160:CDS
TGCTTTGACAGGAATTTACA+AGG 0.534148 5_4:-6338870 Msa0833160:CDS
TCTCAGGGTTGAAGAGGTTG+AGG 0.534892 5_4:-6341206 Msa0833160:CDS
TGTTGGAAGGAGGAGATTGG+CGG 0.536046 5_4:-6335552 None:intergenic
AGAAGGTTCCAAATTGCACT+TGG 0.536947 5_4:-6339260 Msa0833160:CDS
TTCCCACGCCTCATAGTCCT+GGG 0.537875 5_4:+6337224 Msa0833150:CDS
TGTTGCTGCAGGGATGTCTC+CGG 0.538904 5_4:-6340223 Msa0833160:intron
TGGATATGTTGCACCAGAGT+TGG 0.541978 5_4:-6339057 Msa0833160:CDS
AATCTCTATGATAATCTACA+TGG 0.544172 5_4:-6339338 Msa0833160:CDS
AGGGCTAATTTGTACTTCAG+AGG 0.544934 5_4:-6338811 Msa0833160:CDS
GCTTCAGGGAATAATTTGGA+TGG 0.546159 5_4:-6340595 Msa0833160:CDS
CAGCCGGAATTTCGCCGATG+AGG 0.547492 5_4:+6340365 Msa0833150:three_prime_UTR
CTTTGAAGTCCATGAATCCA+TGG 0.548428 5_4:-6336131 None:intergenic
GCAGAGCAAGTGATATCTAA+AGG 0.548758 5_4:+6339893 Msa0833150:three_prime_UTR
ACACAATACCTTGAGTTCAT+GGG 0.550424 5_4:-6341343 Msa0833160:CDS
CATCCGTTCATATTTCGGGT+CGG 0.550467 5_4:+6335644 Msa0833150:CDS
GCAAATCACCAATGAAATCC+GGG 0.551775 5_4:+6341073 Msa0833150:three_prime_UTR
ATCCATCTCTGATGGACTCA+AGG 0.551818 5_4:+6338748 Msa0833150:three_prime_UTR
GTCCTTGAGTCCATCAGAGA+TGG 0.552671 5_4:-6338750 Msa0833160:CDS
CATCGGATTCATAATCCTGA+TGG 0.552817 5_4:+6335736 Msa0833150:CDS
GCTAAGATCAATGTTACTCC+GGG 0.552971 5_4:+6338040 Msa0833150:CDS
TGCGTGGTTACACTTTCCAC+AGG 0.555838 5_4:+6338954 Msa0833150:three_prime_UTR
CAGCACTCTCAGGGTTGAAG+AGG 0.555845 5_4:-6341212 Msa0833160:CDS
GAAAATGAAATTGGGCGACT+AGG 0.556960 5_4:-6339452 Msa0833160:CDS
ACTGACCTTGCTACTTACCA+TGG 0.557547 5_4:+6336114 Msa0833150:CDS
AAACTCAAGTGAGTTGGCAA+TGG 0.557612 5_4:+6335398 Msa0833150:five_prime_UTR
TGGAAGCGGAAGATCATGAT+CGG 0.557918 5_4:+6337642 Msa0833150:CDS
AAACGAAGAGTTTGTGAGCA+TGG 0.560825 5_4:+6337610 Msa0833150:CDS
TTTAAATCTCCAAGTGAAGG+AGG 0.561318 5_4:+6340034 Msa0833150:three_prime_UTR
AAACTCAAACTCAAGTGAGT+TGG 0.561403 5_4:+6335392 Msa0833150:five_prime_UTR
ATAACTCCTACATTAAAACT+TGG 0.562403 5_4:-6337710 None:intergenic
TGTTGTCACCAGCACTCTCA+GGG 0.562951 5_4:-6341221 Msa0833160:CDS
CGTAAAATGGCGATCTGGGG+TGG 0.563080 5_4:+6337346 Msa0833150:CDS
TTGTTCTAGATGATTGATTG+AGG 0.565964 5_4:-6341775 None:intergenic
TTCTTCAAGGTCTATGTGGA+AGG 0.565973 5_4:-6338656 Msa0833160:three_prime_UTR
TCAATGTTGCCAAACCCCTC+AGG 0.568023 5_4:+6340421 Msa0833150:three_prime_UTR
GGAAGCGGAAGATCATGATC+GGG 0.568398 5_4:+6337643 Msa0833150:CDS
GATCGCCATCTTCACCTCCT+GGG 0.568440 5_4:-6339859 Msa0833160:CDS
AGCTGAGAGAGAGCGTGACA+AGG 0.569266 5_4:-6335602 None:intergenic
CAAAATCAACTGCATTGAAG+AGG 0.571450 5_4:+6339382 Msa0833150:three_prime_UTR
GAGAGCGTGACAAGGCGGGG+GGG 0.571475 5_4:-6335594 None:intergenic
AAAATTATAGTGCCTTTGCA+AGG 0.571998 5_4:+6335439 Msa0833150:CDS
CTCCTATAATGAGAATGTTG+TGG 0.573694 5_4:+6337736 Msa0833150:CDS
AAGGAGTCGTTGATAGGAGG+CGG 0.574070 5_4:-6339575 Msa0833160:CDS
CATGGCAGAAATCATGGAAG+CGG 0.576068 5_4:+6337628 Msa0833150:CDS
GGCGGAAGGTTGTTGGAAGG+AGG 0.578316 5_4:-6335562 None:intergenic
TCCTTTAAGAAGACCAAGCA+TGG 0.578827 5_4:-6338787 Msa0833160:CDS
TTCAGGGAATAATTTGGATG+GGG 0.579653 5_4:-6340593 Msa0833160:CDS
ATTTGCCAGCAGGGTTCGAA+GGG 0.580365 5_4:-6337490 None:intergenic
TGAGTCCATCAGAGATGGAT+CGG 0.581222 5_4:-6338745 Msa0833160:CDS
ATGCTGATCTTCACTCATTG+TGG 0.581826 5_4:-6341134 Msa0833160:CDS
ATCAGTTCATGAATGTACTC+GGG 0.582279 5_4:-6338352 Msa0833160:three_prime_UTR
ACACTTGAAAGTTGAAACAA+TGG 0.583650 5_4:+6338506 Msa0833150:three_prime_UTR
AAATTAGGTAATAACTCGAT+AGG 0.584585 5_4:-6340454 Msa0833160:CDS
GCAGTTAGCACCATATGTGA+AGG 0.584986 5_4:-6337136 None:intergenic
ACTGACTCTCCTTATTACGT+TGG 0.587543 5_4:+6335685 Msa0833150:CDS
TTGGAGTTGAATAAGCTGAA+AGG 0.588272 5_4:-6340523 Msa0833160:CDS
TTAAGGTTGAGGTGAAGGAT+CGG 0.589037 5_4:+6339194 Msa0833150:three_prime_UTR
TGCAGCTGTGATTCTAACTG+GGG 0.589108 5_4:-6339792 Msa0833160:CDS
TTAAATCTCCAAGTGAAGGA+GGG 0.590232 5_4:+6340035 Msa0833150:three_prime_UTR
TACTCTAACTCTGAGTTGCA+AGG 0.591171 5_4:+6338696 Msa0833150:three_prime_UTR
CACCAAAGCATTGCTTGACA+AGG 0.591824 5_4:-6339594 Msa0833160:CDS
CAATGCCTTATCAGGTAGTG+TGG 0.592760 5_4:-6340803 Msa0833160:CDS
TTATTTAAATCTCCAAGTGA+AGG 0.593482 5_4:+6340031 Msa0833150:three_prime_UTR
GACAAGGAGTCGTTGATAGG+AGG 0.593748 5_4:-6339578 Msa0833160:CDS
TCGGGCCCTAATACTCATGA+TGG 0.594444 5_4:+6339757 Msa0833150:three_prime_UTR
TTCGTTCCTATAGTGAAAAG+GGG 0.594801 5_4:+6337984 Msa0833150:CDS
GATTTAATAATTTGCCAGCA+GGG 0.595062 5_4:-6337499 None:intergenic
AGTGATACATAAGATAACAT+AGG 0.596660 5_4:+6340832 Msa0833150:three_prime_UTR
CGTTAAAGGTTACAAAGGAG+AGG 0.597571 5_4:-6338399 Msa0833160:three_prime_UTR
AGAAAGTAGAAAAGAGCGCA+AGG 0.597657 5_4:-6335505 None:intergenic
ATGGAAGCGCTGCTATACTA+GGG 0.597721 5_4:+6336061 Msa0833150:CDS
GTCACTGTATTGAACCAGGA+TGG 0.598491 5_4:+6338071 Msa0833150:CDS
ACACCTGTGTAACCTTGACA+TGG 0.598890 5_4:+6341306 Msa0833150:three_prime_UTR
ACCAGAAACCCATGAACTCA+AGG 0.599038 5_4:+6341335 Msa0833150:three_prime_UTR
CCTGGAACCAGCACAAGTAG+AGG 0.599978 5_4:-6339305 Msa0833160:CDS
GATCGAACCGGATAACGCAT+TGG 0.600218 5_4:+6341095 Msa0833150:three_prime_UTR
CCTTGGACAACTCCTTGCAA+AGG 0.600708 5_4:-6335451 None:intergenic
GAGTGCACCAGAAGCAGTGG+TGG 0.601656 5_4:+6337929 Msa0833150:CDS
ATTGTTGAGAGTACACCTCT+AGG 0.602973 5_4:-6339704 Msa0833160:CDS
TTTCAGCTTATTCAACTCCA+AGG 0.604264 5_4:+6340525 Msa0833150:three_prime_UTR
AAGGAGTTGTCCAAGGAACA+GGG 0.604578 5_4:+6335458 Msa0833150:CDS
TCATAAAGACTAACAAGTTG+AGG 0.605108 5_4:+6337855 Msa0833150:CDS
ATCTCTATGATAATCTACAT+GGG 0.605429 5_4:-6339337 Msa0833160:CDS
CATGAACTCAAGGTATTGTG+TGG 0.605466 5_4:+6341345 Msa0833150:three_prime_UTR
CATGCATCATAACCAGCTCA+AGG 0.605703 5_4:-6340137 Msa0833160:CDS
ACCCGAAATATGAACGGATG+CGG 0.606050 5_4:-6335641 None:intergenic
GGGAAGGATCAGAAATCAAG+AGG 0.606236 5_4:-6339480 Msa0833160:CDS
ATTGAGTGCACCAGAAGCAG+TGG 0.606848 5_4:+6337926 Msa0833150:CDS
AACTTGATTGACTTTCAACA+TGG 0.607665 5_4:-6338310 Msa0833160:three_prime_UTR
CCTTTGCAAGGAGTTGTCCA+AGG 0.609185 5_4:+6335451 Msa0833150:CDS
TTGGAACACTAGCTTAGGTG+GGG 0.610768 5_4:-6341244 Msa0833160:CDS
TCGCAGATAATCCCTATCAT+CGG 0.610937 5_4:+6335719 Msa0833150:CDS
TGATGAATCTGACATCACTC+AGG 0.611942 5_4:+6338235 Msa0833150:three_prime_UTR
TGAGAGAGAGCGTGACAAGG+CGG 0.612272 5_4:-6335599 None:intergenic
ATACAGTGACAAGAGGATCC+CGG 0.612424 5_4:-6338058 Msa0833160:three_prime_UTR
AGGTTGAGGTGAAGGATCGG+AGG 0.613263 5_4:+6339197 Msa0833150:three_prime_UTR
GAATGTCACATAGTCTAGAA+GGG 0.614085 5_4:+6340854 Msa0833150:three_prime_UTR
GAAGAAAGAAACAAGCAAAG+AGG 0.615118 5_4:+6338441 Msa0833150:three_prime_UTR
TTGCATCTAGTTATGCTAGA+GGG 0.616200 5_4:+6340565 Msa0833150:three_prime_UTR
TCTTGTCACTGTATTGAACC+AGG 0.618687 5_4:+6338067 Msa0833150:CDS
CAGTACCTAAACAAAGCTGA+AGG 0.620424 5_4:+6341000 Msa0833150:three_prime_UTR
GCAAAGAGGATTCAAATCGT+AGG 0.620636 5_4:+6338455 Msa0833150:three_prime_UTR
ATCAAAATATGAAGATTGGG+AGG 0.620789 5_4:-6339621 Msa0833160:CDS
TTATTCGTTAAAGGTTACAA+AGG 0.621756 5_4:-6338404 Msa0833160:three_prime_UTR
CAACATATCCAACAGCATTG+TGG 0.622216 5_4:+6339069 Msa0833150:three_prime_UTR
AATCACAGCTGCAGCAACAA+TGG 0.622253 5_4:+6339802 Msa0833150:three_prime_UTR
TGAATCCATGGTAAGTAGCA+AGG 0.622432 5_4:-6336119 None:intergenic
AAGGAGATCCGGATTGACAC+TGG 0.622865 5_4:-6338637 Msa0833160:three_prime_UTR
CAGTTAGCACCATATGTGAA+GGG 0.623911 5_4:-6337135 None:intergenic
TACCCAGGACTATGAGGCGT+GGG 0.625346 5_4:-6337226 None:intergenic
CTTGCATCTAGTTATGCTAG+AGG 0.626093 5_4:+6340564 Msa0833150:three_prime_UTR
TCTGGTGGAGACCCATGTCA+AGG 0.626122 5_4:-6341318 Msa0833160:CDS
ATAGGCGGAATGATTCCTGA+GGG 0.626629 5_4:-6340436 Msa0833160:CDS
ATGCATCATAACCAGCTCAA+GGG 0.627951 5_4:-6340136 Msa0833160:CDS
GGTTGAGGTGAAGGATCGGA+GGG 0.629687 5_4:+6339198 Msa0833150:three_prime_UTR
GGAGGCGGAAGGTTGTTGGA+AGG 0.630218 5_4:-6335565 None:intergenic
CTAGGGACACCATCAAATTG+TGG 0.630370 5_4:+6336078 Msa0833150:CDS
GTCTCCGGTAATAACTTAGA+CGG 0.630423 5_4:-6340208 Msa0833160:CDS
CAAAACAACAACCTCATGCG+TGG 0.632866 5_4:+6338938 Msa0833150:three_prime_UTR
GACCCGACCCGAAATATGAA+CGG 0.635011 5_4:-6335647 None:intergenic
GAGCAATTCACCAAAGACAC+AGG 0.638233 5_4:+6340925 Msa0833150:three_prime_UTR
TTAGATATTATCGATAAACA+AGG 0.638946 5_4:-6335288 None:intergenic
CTGGTTATGATGCATGTCAA+GGG 0.641439 5_4:+6340144 Msa0833150:three_prime_UTR
ATCATGGTGGAGATAGGCAA+GGG 0.641638 5_4:+6339226 Msa0833150:three_prime_UTR
TGGATTCATGGACTTCAAAG+TGG 0.643980 5_4:+6336134 Msa0833150:CDS
TTGAACAACCTAAACCTCAT+CGG 0.644895 5_4:-6340379 Msa0833160:CDS
CACCTGTGTAACCTTGACAT+GGG 0.644930 5_4:+6341307 Msa0833150:three_prime_UTR
GACCCATGTCAAGGTTACAC+AGG 0.645143 5_4:-6341309 Msa0833160:CDS
CCTATGGTGCAGCTTTGATG+AGG 0.645473 5_4:+6337322 Msa0833150:intron
TTCGAGACTACAAGTTGACG+TGG 0.646238 5_4:+6338163 Msa0833150:exon
TGGTTCAATACAGTGACAAG+AGG 0.646697 5_4:-6338065 Msa0833160:three_prime_UTR
AATCATGGTGGAGATAGGCA+AGG 0.647329 5_4:+6339225 Msa0833150:three_prime_UTR
ATTGACACTGGTTATTAGGG+GGG 0.648796 5_4:-6338625 Msa0833160:three_prime_UTR
GCTGGTTATGATGCATGTCA+AGG 0.650361 5_4:+6340143 Msa0833150:three_prime_UTR
GGCCGTAAAATGGCGATCTG+GGG 0.651142 5_4:+6337343 Msa0833150:CDS
AGAAGCTTGAGACTTTGGGA+AGG 0.651892 5_4:-6339496 Msa0833160:CDS
GTTGATATTCAAGAATTGCG+AGG 0.653279 5_4:-6340490 Msa0833160:CDS
GGAGTTGTCCAAGGAACAGG+GGG 0.653313 5_4:+6335460 Msa0833150:CDS
GGATTGACACTGGTTATTAG+GGG 0.655756 5_4:-6338627 Msa0833160:three_prime_UTR
TTGACACTGGTTATTAGGGG+GGG 0.656193 5_4:-6338624 Msa0833160:three_prime_UTR
AGTTACAGGGAGGAAGCCTG+TGG 0.660245 5_4:-6338970 Msa0833160:CDS
TTAGGTAATAACTCGATAGG+CGG 0.660846 5_4:-6340451 Msa0833160:CDS
GATTGACACTGGTTATTAGG+GGG 0.669356 5_4:-6338626 Msa0833160:three_prime_UTR
GATAGGCGGAATGATTCCTG+AGG 0.672730 5_4:-6340437 Msa0833160:CDS
GAAGAATGGATTCGTCACAA+TGG 0.675346 5_4:+6336042 Msa0833150:CDS
TAGCAAGGTCAGTGATACTG+AGG 0.675550 5_4:-6336104 None:intergenic
TTAATGAGAATGCTACATGT+TGG 0.675664 5_4:-6341628 Msa0833160:five_prime_UTR
GATGATTCTGTTGATCCTAG+AGG 0.676351 5_4:+6339689 Msa0833150:three_prime_UTR
GCAATTCTTGAATATCAACT+GGG 0.681985 5_4:+6340494 Msa0833150:three_prime_UTR
AGGAGTTGTCCAAGGAACAG+GGG 0.684611 5_4:+6335459 Msa0833150:CDS
ATCAAAGAATGGCTTCAATG+GGG 0.685524 5_4:-6341028 Msa0833160:CDS
TCGTTCCTATAGTGAAAAGG+GGG 0.686058 5_4:+6337985 Msa0833150:CDS
TCGGAGGGCGACAATCATGG+TGG 0.703518 5_4:+6339213 Msa0833150:three_prime_UTR
GGAAAGTGTAACCACGCATG+AGG 0.722085 5_4:-6338949 Msa0833160:CDS
TAGGCGGAATGATTCCTGAG+GGG 0.740049 5_4:-6340435 Msa0833160:CDS
AGAAGTTTAGTCTTCCCAGG+AGG 0.750266 5_4:+6339845 Msa0833150:three_prime_UTR
GTTCAAAGGTAACATCACTG+AGG 0.780669 5_4:-6341370 Msa0833160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAACTAAAATAACT+AGG - chr5_4:6336610-6336629 None:intergenic 10.0%
!! CAAAATAAAAACAAAAATTA+TGG + chr5_4:6336694-6336713 Msa0833150:intron 10.0%
!! ATATATATTAGTGTTAAAGA+TGG - chr5_4:6336561-6336580 None:intergenic 15.0%
!! TAAAATGACATTGAAATAAT+GGG - chr5_4:6336637-6336656 None:intergenic 15.0%
!! ATAAAATGACATTGAAATAA+TGG - chr5_4:6336638-6336657 None:intergenic 15.0%
!!! CAAATATTAAACTGATTTTT+AGG + chr5_4:6336661-6336680 Msa0833150:intron 15.0%
!!! TGTTTTTATTTTGTTTAACA+TGG - chr5_4:6336687-6336706 None:intergenic 15.0%
!! ATAATCTCTAATGAAATATT+TGG + chr5_4:6337572-6337591 Msa0833150:CDS 15.0%
!! AATATACAAAACAAATAAAC+AGG - chr5_4:6338269-6338288 Msa0833160:three_prime_UTR 15.0%
!! ATTTCAATATATCCTATAAT+GGG - chr5_4:6340678-6340697 Msa0833160:CDS 15.0%
!! TATTTCAATATATCCTATAA+TGG - chr5_4:6340679-6340698 Msa0833160:CDS 15.0%
!! TTAGATATTATCGATAAACA+AGG - chr5_4:6335291-6335310 None:intergenic 20.0%
!!! ATATTTTTTTAGTTGAGTCT+CGG - chr5_4:6335345-6335364 None:intergenic 20.0%
!!! TTTTATGCATACTATTACTA+AGG + chr5_4:6336871-6336890 Msa0833150:intron 20.0%
!!! TAATGATAGTTTTAAACCTA+TGG + chr5_4:6337306-6337325 Msa0833150:intron 20.0%
!! AAAAATGTATAATGCATTTG+TGG + chr5_4:6337883-6337902 Msa0833150:CDS 20.0%
!! TCAATGTAGTAAAACAAAAA+CGG - chr5_4:6338099-6338118 Msa0833160:three_prime_UTR 20.0%
!!! ATTATTTCTGCAAATTTCAT+TGG + chr5_4:6338191-6338210 Msa0833150:three_prime_UTR 20.0%
!! ATATTGTCTTTATTCGTTAA+AGG - chr5_4:6338416-6338435 Msa0833160:three_prime_UTR 20.0%
!! ATTTGTAACATTGCAATAAA+AGG - chr5_4:6338544-6338563 Msa0833160:three_prime_UTR 20.0%
!! CTTAATAATTACATTCTTCA+AGG - chr5_4:6338672-6338691 Msa0833160:three_prime_UTR 20.0%
!! AAATGTTATAATTGGAAAGT+TGG - chr5_4:6339669-6339688 Msa0833160:CDS 20.0%
!! GAATCATCAAATGTTATAAT+TGG - chr5_4:6339677-6339696 Msa0833160:CDS 20.0%
!!! TAGTAATAGATTTACTGATT+TGG - chr5_4:6340737-6340756 Msa0833160:CDS 20.0%
!!! TTTTCTTTCAATAATCTTAG+TGG - chr5_4:6340886-6340905 Msa0833160:CDS 20.0%
!! TTTCTAGATTTATCAAAGAA+TGG - chr5_4:6341042-6341061 Msa0833160:CDS 20.0%
!! AAATCTAGAAAACGAATATT+AGG + chr5_4:6341051-6341070 Msa0833150:three_prime_UTR 20.0%
!!! TTTAAGGTTTTGTAAAATGT+CGG + chr5_4:6341571-6341590 Msa0833150:three_prime_UTR 20.0%
!! GTGTGTTAAAAAAAATGATT+TGG + chr5_4:6341815-6341834 Msa0833150:three_prime_UTR 20.0%
!! TCAATTGGATATTGTGTTTT+GGG - chr5_4:6335248-6335267 None:intergenic 25.0%
!! ATCAATTGGATATTGTGTTT+TGG - chr5_4:6335249-6335268 None:intergenic 25.0%
! CTAACTAACTCTTTATCAAT+TGG - chr5_4:6335263-6335282 None:intergenic 25.0%
! TTGTTTAAACCAACGTAATA+AGG - chr5_4:6335697-6335716 None:intergenic 25.0%
! AGATTGAATCAATTCTATCT+TGG + chr5_4:6336217-6336236 Msa0833150:intron 25.0%
!! TATGTAGCATTTTAGATTGA+AGG + chr5_4:6336296-6336315 Msa0833150:intron 25.0%
! GAGAATTAAGATAGAAACAA+AGG - chr5_4:6337054-6337073 None:intergenic 25.0%
! TCTTAATTCTCTAATCATAC+AGG + chr5_4:6337063-6337082 Msa0833150:intron 25.0%
!! AGATAACTAAACAAGGATTT+TGG - chr5_4:6337270-6337289 None:intergenic 25.0%
! ATCTCTAATGAAATATTTGG+AGG + chr5_4:6337575-6337594 Msa0833150:CDS 25.0%
! AGTTCATATAGTGTTTGATT+TGG + chr5_4:6337670-6337689 Msa0833150:CDS 25.0%
!!! TATGTTCCAAGTTTTAATGT+AGG + chr5_4:6337704-6337723 Msa0833150:CDS 25.0%
! ATAACTCCTACATTAAAACT+TGG - chr5_4:6337713-6337732 None:intergenic 25.0%
! AAATGATATTCCTGTAGTAA+TGG + chr5_4:6338123-6338142 Msa0833150:CDS 25.0%
! TTATTCGTTAAAGGTTACAA+AGG - chr5_4:6338407-6338426 Msa0833160:three_prime_UTR 25.0%
! AACGAATAAAGACAATATTG+AGG + chr5_4:6338418-6338437 Msa0833150:three_prime_UTR 25.0%
! ACGAATAAAGACAATATTGA+GGG + chr5_4:6338419-6338438 Msa0833150:three_prime_UTR 25.0%
!! TGATTCAGGTTATGAAATTA+GGG - chr5_4:6338833-6338852 Msa0833160:CDS 25.0%
!! TTGATTCAGGTTATGAAATT+AGG - chr5_4:6338834-6338853 Msa0833160:CDS 25.0%
! TGAATATGTAAGAAGTTTGT+TGG - chr5_4:6338916-6338935 Msa0833160:CDS 25.0%
!!! CTACCTATTTTGGATAATTT+CGG - chr5_4:6339107-6339126 Msa0833160:CDS 25.0%
! AAGTTATCTGATTATGGATT+AGG - chr5_4:6339137-6339156 Msa0833160:CDS 25.0%
! TAATCCATAATCAGATAACT+TGG + chr5_4:6339136-6339155 Msa0833150:three_prime_UTR 25.0%
! ATCTCTATGATAATCTACAT+GGG - chr5_4:6339340-6339359 Msa0833160:CDS 25.0%
! AATCTCTATGATAATCTACA+TGG - chr5_4:6339341-6339360 Msa0833160:CDS 25.0%
! TGTAATTTAGTTGCATTTCA+AGG - chr5_4:6339419-6339438 Msa0833160:CDS 25.0%
! AGGAATTCGAAAATGAAATT+GGG - chr5_4:6339463-6339482 Msa0833160:CDS 25.0%
! ACCATCAAAATATGAAGATT+GGG - chr5_4:6339627-6339646 Msa0833160:CDS 25.0%
! TACCATCAAAATATGAAGAT+TGG - chr5_4:6339628-6339647 Msa0833160:CDS 25.0%
! TTATTTAAATCTCCAAGTGA+AGG + chr5_4:6340031-6340050 Msa0833150:three_prime_UTR 25.0%
!! CTATCACATAATTCATTTTC+TGG - chr5_4:6340067-6340086 Msa0833160:CDS 25.0%
! ATGAATTATGTGATAGATCT+AGG + chr5_4:6340071-6340090 Msa0833150:three_prime_UTR 25.0%
! ATATTTGATTCACATTACAG+AGG + chr5_4:6340261-6340280 Msa0833150:intron 25.0%
! AAATTAGGTAATAACTCGAT+AGG - chr5_4:6340457-6340476 Msa0833160:CDS 25.0%
! AGTGATACATAAGATAACAT+AGG + chr5_4:6340832-6340851 Msa0833150:three_prime_UTR 25.0%
! AAGAAAAATCAAAACCTTCA+AGG + chr5_4:6340899-6340918 Msa0833150:three_prime_UTR 25.0%
!!! TTTTTCAGTTACAACGTTTA+AGG + chr5_4:6341555-6341574 Msa0833150:three_prime_UTR 25.0%
!!! ATTGATGTTTTGTTTCTCAT+TGG - chr5_4:6341598-6341617 Msa0833160:five_prime_UTR 25.0%
! GTAGAAGAAGTAGATATAAT+GGG - chr5_4:6341756-6341775 None:intergenic 25.0%
!!! AAAAAATGATTTGGCTTTTG+TGG + chr5_4:6341824-6341843 Msa0833150:three_prime_UTR 25.0%
!!! AAAAATGATTTGGCTTTTGT+GGG + chr5_4:6341825-6341844 Msa0833150:three_prime_UTR 25.0%
AAAATTATAGTGCCTTTGCA+AGG + chr5_4:6335439-6335458 Msa0833150:CDS 30.0%
AGAAAAGGAATAACTACTCA+CGG - chr5_4:6335791-6335810 None:intergenic 30.0%
! TAATCACATGTGTCATTATC+AGG - chr5_4:6335855-6335874 None:intergenic 30.0%
TTAAATTACCATTAGTGTCG+AGG + chr5_4:6335896-6335915 Msa0833150:intron 30.0%
GTGTAGATTTGATTGAAGAA+TGG + chr5_4:6336028-6336047 Msa0833150:CDS 30.0%
! AGTAACAAGTTGAATCAATC+AGG - chr5_4:6336195-6336214 None:intergenic 30.0%
! TCTAAAATGCTACATAGCTT+TGG - chr5_4:6336292-6336311 None:intergenic 30.0%
ATATTGGATCAAATAGTCCA+TGG - chr5_4:6336739-6336758 None:intergenic 30.0%
!! AAGCTTTAAGATCCTCATAT+TGG - chr5_4:6336755-6336774 None:intergenic 30.0%
GAAGAGTAGATAACTAAACA+AGG - chr5_4:6337277-6337296 None:intergenic 30.0%
! GATTTAATAATTTGCCAGCA+GGG - chr5_4:6337502-6337521 None:intergenic 30.0%
ATCCACAACATTCTCATTAT+AGG - chr5_4:6337741-6337760 None:intergenic 30.0%
!!! TGAGAATTGTGCCATTTTTT+TGG - chr5_4:6337768-6337787 None:intergenic 30.0%
TTACCATGATTTCAGATACA+AGG + chr5_4:6337819-6337838 Msa0833150:CDS 30.0%
! AAACCTTGTATCTGAAATCA+TGG - chr5_4:6337825-6337844 Msa0833160:three_prime_UTR 30.0%
TCATAAAGACTAACAAGTTG+AGG + chr5_4:6337855-6337874 Msa0833150:CDS 30.0%
ATGTATAATGCATTTGTGGA+AGG + chr5_4:6337887-6337906 Msa0833150:CDS 30.0%
ATTCGTTCCTATAGTGAAAA+GGG + chr5_4:6337983-6338002 Msa0833150:CDS 30.0%
! TGTTTTGTATATTGCTCAAG+AGG + chr5_4:6338276-6338295 Msa0833150:three_prime_UTR 30.0%
! AACTTGATTGACTTTCAACA+TGG - chr5_4:6338313-6338332 Msa0833160:three_prime_UTR 30.0%
!! TCAACTTTCAAGTGTTTTCA+GGG - chr5_4:6338501-6338520 Msa0833160:three_prime_UTR 30.0%
!! TTCAACTTTCAAGTGTTTTC+AGG - chr5_4:6338502-6338521 Msa0833160:three_prime_UTR 30.0%
ACACTTGAAAGTTGAAACAA+TGG + chr5_4:6338506-6338525 Msa0833150:three_prime_UTR 30.0%
! TGTTGAGAATGAATTGATTC+AGG - chr5_4:6338847-6338866 Msa0833160:CDS 30.0%
AAGTGTGATGTTTACAGTTT+CGG - chr5_4:6339014-6339033 Msa0833160:CDS 30.0%
AGACCGAAATTATCCAAAAT+AGG + chr5_4:6339101-6339120 Msa0833150:three_prime_UTR 30.0%
! TTCATCTAAGAGTATGTTAG+AGG + chr5_4:6339169-6339188 Msa0833150:three_prime_UTR 30.0%
AGAGTATGTTAGAGGATTTA+AGG + chr5_4:6339177-6339196 Msa0833150:three_prime_UTR 30.0%
! TTGTCAGAGTTTGTTTCAAA+TGG - chr5_4:6339365-6339384 Msa0833160:CDS 30.0%
! CAACTAAATTACAGTGTTGA+AGG + chr5_4:6339426-6339445 Msa0833150:three_prime_UTR 30.0%
GAGGAATTCGAAAATGAAAT+TGG - chr5_4:6339464-6339483 Msa0833160:CDS 30.0%
ATCAAAATATGAAGATTGGG+AGG - chr5_4:6339624-6339643 Msa0833160:CDS 30.0%
!! TCCCAATCTTCATATTTTGA+TGG + chr5_4:6339623-6339642 Msa0833150:three_prime_UTR 30.0%
AAAGGATTATTGGAAAATGC+AGG + chr5_4:6339929-6339948 Msa0833150:three_prime_UTR 30.0%
! ATTGCAACAATACAGCATTT+TGG - chr5_4:6339959-6339978 Msa0833160:CDS 30.0%
TATGTGATAGATCTAGGAAT+TGG + chr5_4:6340077-6340096 Msa0833150:three_prime_UTR 30.0%
! GGACTATTGGTTATCAAATT+AGG - chr5_4:6340472-6340491 Msa0833160:CDS 30.0%
GCAATTCTTGAATATCAACT+GGG + chr5_4:6340494-6340513 Msa0833150:three_prime_UTR 30.0%
!! ATATCCTATAATGGGTTTGA+AGG - chr5_4:6340670-6340689 Msa0833160:CDS 30.0%
! AGTCTAATGCATTTGGATTT+TGG - chr5_4:6340760-6340779 Msa0833160:CDS 30.0%
AATCCAAATGCATTAGACTA+TGG + chr5_4:6340761-6340780 Msa0833150:three_prime_UTR 30.0%
CTTTCTCATAACAATCTTGT+TGG - chr5_4:6340958-6340977 Msa0833160:CDS 30.0%
TATCAAAGAATGGCTTCAAT+GGG - chr5_4:6341032-6341051 Msa0833160:CDS 30.0%
TTATCAAAGAATGGCTTCAA+TGG - chr5_4:6341033-6341052 Msa0833160:CDS 30.0%
!! ATTGTTTGGGAATCGATTTT+CGG - chr5_4:6341178-6341197 Msa0833160:CDS 30.0%
TGAGGATATTGACATTGTTT+GGG - chr5_4:6341191-6341210 Msa0833160:CDS 30.0%
TTGAGGATATTGACATTGTT+TGG - chr5_4:6341192-6341211 Msa0833160:CDS 30.0%
TTGTAGAAAGAATTGTGCTT+TGG - chr5_4:6341266-6341285 Msa0833160:CDS 30.0%
! GAGATTTTACTTCAGTTCAA+AGG - chr5_4:6341387-6341406 Msa0833160:CDS 30.0%
TTAATGAGAATGCTACATGT+TGG - chr5_4:6341631-6341650 Msa0833160:five_prime_UTR 30.0%
GGTAGAAGAAGTAGATATAA+TGG - chr5_4:6341757-6341776 None:intergenic 30.0%
! TTGTTCTAGATGATTGATTG+AGG - chr5_4:6341778-6341797 None:intergenic 30.0%
!!! AAAATGATTTGGCTTTTGTG+GGG + chr5_4:6341826-6341845 Msa0833150:three_prime_UTR 30.0%
TGTAAAGGGTAGCATAAAAA+TGG + chr5_4:6341850-6341869 Msa0833150:three_prime_UTR 30.0%
AAACTCAAACTCAAGTGAGT+TGG + chr5_4:6335392-6335411 Msa0833150:five_prime_UTR 35.0%
GGATTATGAATCCGATGATA+GGG - chr5_4:6335733-6335752 None:intergenic 35.0%
AGGATTATGAATCCGATGAT+AGG - chr5_4:6335734-6335753 None:intergenic 35.0%
! ATAACTACTCACGGTGTTTT+GGG - chr5_4:6335782-6335801 None:intergenic 35.0%
! AATAACTACTCACGGTGTTT+TGG - chr5_4:6335783-6335802 None:intergenic 35.0%
! ATTCCTTTTCTCTTCTCTGT+AGG + chr5_4:6335800-6335819 Msa0833150:intron 35.0%
GAATCAATCAGGAAGAACAA+AGG - chr5_4:6336184-6336203 None:intergenic 35.0%
GTTCGATGTTTGATATGTAG+CGG + chr5_4:6336420-6336439 Msa0833150:intron 35.0%
!! GTAGCGGACAATACATATAT+AGG + chr5_4:6336436-6336455 Msa0833150:intron 35.0%
AATTATGGTCCATGATCTGT+TGG + chr5_4:6336709-6336728 Msa0833150:intron 35.0%
GGACTATTTGATCCAATATG+AGG + chr5_4:6336740-6336759 Msa0833150:intron 35.0%
ATTAACTCAAAAGCTGAGTG+TGG + chr5_4:6336899-6336918 Msa0833150:intron 35.0%
TTCTCTAATCATACAGGTTG+TGG + chr5_4:6337069-6337088 Msa0833150:intron 35.0%
! TGGTTTCATGTCTCAAGTTT+TGG + chr5_4:6337093-6337112 Msa0833150:CDS 35.0%
TTTCTTCAACCCTTCACATA+TGG + chr5_4:6337126-6337145 Msa0833150:CDS 35.0%
AGCTTAGAATTTCAATGGCA+GGG - chr5_4:6337171-6337190 None:intergenic 35.0%
AAGCTTAGAATTTCAATGGC+AGG - chr5_4:6337172-6337191 None:intergenic 35.0%
GCAGAAGCTTAGAATTTCAA+TGG - chr5_4:6337176-6337195 None:intergenic 35.0%
ATGCATTTCCATTATCTGCT+AGG - chr5_4:6337198-6337217 None:intergenic 35.0%
TATGAAATTGACTGTTACCC+AGG - chr5_4:6337244-6337263 None:intergenic 35.0%
TTAGTTATCTACTCTTCTGC+AGG + chr5_4:6337280-6337299 Msa0833150:intron 35.0%
TTTGACTACGTTTCTTTGCT+TGG - chr5_4:6337445-6337464 None:intergenic 35.0%
AAACGTAGTCAAAAAGTTCG+TGG + chr5_4:6337452-6337471 Msa0833150:CDS 35.0%
! CGATTTAATAATTTGCCAGC+AGG - chr5_4:6337503-6337522 None:intergenic 35.0%
AGAAACACTACTTGATCTTC+TGG + chr5_4:6337523-6337542 Msa0833150:CDS 35.0%
CTCCTATAATGAGAATGTTG+TGG + chr5_4:6337736-6337755 Msa0833150:CDS 35.0%
!!! GAATTGTGCCATTTTTTTGG+AGG - chr5_4:6337765-6337784 None:intergenic 35.0%
GTAATAAGCAATTGCTGAGT+TGG - chr5_4:6337803-6337822 Msa0833160:three_prime_UTR 35.0%
CATTCGTTCCTATAGTGAAA+AGG + chr5_4:6337982-6338001 Msa0833150:CDS 35.0%
TTCGTTCCTATAGTGAAAAG+GGG + chr5_4:6337984-6338003 Msa0833150:CDS 35.0%
AGCTAAGATCAATGTTACTC+CGG + chr5_4:6338039-6338058 Msa0833150:CDS 35.0%
TTGTATATTGCTCAAGAGGA+CGG + chr5_4:6338280-6338299 Msa0833150:three_prime_UTR 35.0%
ATCAGTTCATGAATGTACTC+GGG - chr5_4:6338355-6338374 Msa0833160:three_prime_UTR 35.0%
CATCAGTTCATGAATGTACT+CGG - chr5_4:6338356-6338375 Msa0833160:three_prime_UTR 35.0%
GAAGAAAGAAACAAGCAAAG+AGG + chr5_4:6338441-6338460 Msa0833150:three_prime_UTR 35.0%
!! CAACTTTCAAGTGTTTTCAG+GGG - chr5_4:6338500-6338519 Msa0833160:three_prime_UTR 35.0%
TACATTCTTCAAGGTCTATG+TGG - chr5_4:6338663-6338682 Msa0833160:three_prime_UTR 35.0%
TTGCAAGGAAAAACTCTTAC+TGG + chr5_4:6338711-6338730 Msa0833150:three_prime_UTR 35.0%
TGCTTTGACAGGAATTTACA+AGG - chr5_4:6338873-6338892 Msa0833160:CDS 35.0%
!! GTAAGAAGTTTGTTGGAAAC+TGG - chr5_4:6338909-6338928 Msa0833160:CDS 35.0%
!!! TTCTTTTGGAGCTAGTTACA+GGG - chr5_4:6338986-6339005 Msa0833160:CDS 35.0%
!!! ATTCTTTTGGAGCTAGTTAC+AGG - chr5_4:6338987-6339006 Msa0833160:CDS 35.0%
! AGGAAAGTTGCTACCTATTT+TGG - chr5_4:6339117-6339136 Msa0833160:CDS 35.0%
GAAGCCAAGTTATCTGATTA+TGG - chr5_4:6339143-6339162 Msa0833160:CDS 35.0%
! TGTTAGAGGATTTAAGGTTG+AGG + chr5_4:6339183-6339202 Msa0833150:three_prime_UTR 35.0%
! GGGAATTATATTGGTCTAGA+AGG - chr5_4:6339280-6339299 Msa0833160:CDS 35.0%
GAGGCAATAGGGAATTATAT+TGG - chr5_4:6339289-6339308 Msa0833160:CDS 35.0%
TATGATAATCTACATGGGCT+TGG - chr5_4:6339335-6339354 Msa0833160:CDS 35.0%
CAAAATCAACTGCATTGAAG+AGG + chr5_4:6339382-6339401 Msa0833150:three_prime_UTR 35.0%
TTGCATTTCAAGGTTACTAC+TGG - chr5_4:6339409-6339428 Msa0833160:CDS 35.0%
!! GTCTACAAAACCGATTTTGA+AGG - chr5_4:6339542-6339561 Msa0833160:CDS 35.0%
!!! CATCGTCTTTTTTTCTACGT+CGG + chr5_4:6339738-6339757 Msa0833150:three_prime_UTR 35.0%
!!! ATCGTCTTTTTTTCTACGTC+GGG + chr5_4:6339739-6339758 Msa0833150:three_prime_UTR 35.0%
! TCCAATAATCCTTTTCTCTG+CGG - chr5_4:6339923-6339942 Msa0833160:CDS 35.0%
TGCTGTATTGTTGCAATATC+AGG + chr5_4:6339962-6339981 Msa0833150:three_prime_UTR 35.0%
TTTAAATCTCCAAGTGAAGG+AGG + chr5_4:6340034-6340053 Msa0833150:three_prime_UTR 35.0%
TTAAATCTCCAAGTGAAGGA+GGG + chr5_4:6340035-6340054 Msa0833150:three_prime_UTR 35.0%
!! GTCATTTTGTAAACAGACTG+AGG + chr5_4:6340178-6340197 Msa0833150:three_prime_UTR 35.0%
!! TTGCAATTTGTTATGTCAGC+CGG + chr5_4:6340349-6340368 Msa0833150:three_prime_UTR 35.0%
TTGAACAACCTAAACCTCAT+CGG - chr5_4:6340382-6340401 Msa0833160:CDS 35.0%
TTAGGTAATAACTCGATAGG+CGG - chr5_4:6340454-6340473 Msa0833160:CDS 35.0%
GTTGATATTCAAGAATTGCG+AGG - chr5_4:6340493-6340512 Msa0833160:CDS 35.0%
CGCAATTCTTGAATATCAAC+TGG + chr5_4:6340493-6340512 Msa0833150:three_prime_UTR 35.0%
TGGAGTTGAATAAGCTGAAA+GGG - chr5_4:6340525-6340544 Msa0833160:CDS 35.0%
TTGGAGTTGAATAAGCTGAA+AGG - chr5_4:6340526-6340545 Msa0833160:CDS 35.0%
TTTCAGCTTATTCAACTCCA+AGG + chr5_4:6340525-6340544 Msa0833150:three_prime_UTR 35.0%
TTGCATCTAGTTATGCTAGA+GGG + chr5_4:6340565-6340584 Msa0833150:three_prime_UTR 35.0%
TTCAGGGAATAATTTGGATG+GGG - chr5_4:6340596-6340615 Msa0833160:CDS 35.0%
CTTCAGGGAATAATTTGGAT+GGG - chr5_4:6340597-6340616 Msa0833160:CDS 35.0%
TGATGCTTCAGGGAATAATT+TGG - chr5_4:6340602-6340621 Msa0833160:CDS 35.0%
TTGTCCTTCAAACCCATTAT+AGG + chr5_4:6340663-6340682 Msa0833150:three_prime_UTR 35.0%
! ATGTAAGATTTTGCAGTCCT+AGG + chr5_4:6340698-6340717 Msa0833150:three_prime_UTR 35.0%
ATGCCATAGTCTAATGCATT+TGG - chr5_4:6340767-6340786 Msa0833160:CDS 35.0%
GAATGTCACATAGTCTAGAA+GGG + chr5_4:6340854-6340873 Msa0833150:three_prime_UTR 35.0%
!! AGATACCTTCAGCTTTGTTT+AGG - chr5_4:6341008-6341027 Msa0833160:CDS 35.0%
ATCAAAGAATGGCTTCAATG+GGG - chr5_4:6341031-6341050 Msa0833160:CDS 35.0%
TGAAGATCAGCATAATCATC+TGG + chr5_4:6341144-6341163 Msa0833150:three_prime_UTR 35.0%
!! TTGTTTGGGAATCGATTTTC+GGG - chr5_4:6341177-6341196 Msa0833160:CDS 35.0%
! GGTGTTTTCTGTAACATAGA+AGG - chr5_4:6341291-6341310 Msa0833160:CDS 35.0%
ACACAATACCTTGAGTTCAT+GGG - chr5_4:6341346-6341365 Msa0833160:CDS 35.0%
AAAATCTCTTTCTCAGTAGC+TGG + chr5_4:6341399-6341418 Msa0833150:three_prime_UTR 35.0%
!!! CTTGTTTTGGTCTATTGCAA+CGG - chr5_4:6341430-6341449 Msa0833160:CDS 35.0%
CATGTAGCATTCTCATTAAG+AGG + chr5_4:6341632-6341651 Msa0833150:three_prime_UTR 35.0%
AATGGGTAGTAGTAGTAGTT+TGG - chr5_4:6341739-6341758 None:intergenic 35.0%
!!! TGTGTTTTGGGTGTTGAGAT+AGG - chr5_4:6335236-6335255 None:intergenic 40.0%
GTCTCGGACTAATCAAAGTT+GGG - chr5_4:6335329-6335348 None:intergenic 40.0%
AGTCTCGGACTAATCAAAGT+TGG - chr5_4:6335330-6335349 None:intergenic 40.0%
! AAACTCAAGTGAGTTGGCAA+TGG + chr5_4:6335398-6335417 Msa0833150:five_prime_UTR 40.0%
! TGAGTTGGCAATGGTTTAGT+GGG + chr5_4:6335407-6335426 Msa0833150:five_prime_UTR 40.0%
! AGAAAGTAGAAAAGAGCGCA+AGG - chr5_4:6335508-6335527 None:intergenic 40.0%
AACCGCATCCGTTCATATTT+CGG + chr5_4:6335639-6335658 Msa0833150:CDS 40.0%
AGGAGAGTCAGTTGTGATTA+TGG - chr5_4:6335677-6335696 None:intergenic 40.0%
! ACTGACTCTCCTTATTACGT+TGG + chr5_4:6335685-6335704 Msa0833150:CDS 40.0%
TCGCAGATAATCCCTATCAT+CGG + chr5_4:6335719-6335738 Msa0833150:CDS 40.0%
CATCGGATTCATAATCCTGA+TGG + chr5_4:6335736-6335755 Msa0833150:CDS 40.0%
ATGCCTACAGAGAAGAGAAA+AGG - chr5_4:6335806-6335825 None:intergenic 40.0%
TACTAACACCTCGACACTAA+TGG - chr5_4:6335907-6335926 None:intergenic 40.0%
!! TTAGTATCGTGTTTGGTGTC+CGG + chr5_4:6335921-6335940 Msa0833150:intron 40.0%
CATAAAACACTGACACACAC+CGG - chr5_4:6335943-6335962 None:intergenic 40.0%
! GAAGAATGGATTCGTCACAA+TGG + chr5_4:6336042-6336061 Msa0833150:CDS 40.0%
TGAATCCATGGTAAGTAGCA+AGG - chr5_4:6336122-6336141 None:intergenic 40.0%
! TGCTACTTACCATGGATTCA+TGG + chr5_4:6336122-6336141 Msa0833150:CDS 40.0%
!! CTTTGAAGTCCATGAATCCA+TGG - chr5_4:6336134-6336153 None:intergenic 40.0%
TGGATTCATGGACTTCAAAG+TGG + chr5_4:6336134-6336153 Msa0833150:CDS 40.0%
ATTCATGGACTTCAAAGTGG+TGG + chr5_4:6336137-6336156 Msa0833150:intron 40.0%
TTCATGGACTTCAAAGTGGT+GGG + chr5_4:6336138-6336157 Msa0833150:intron 40.0%
! GAAGAACAAAGGCACAAGAT+AGG - chr5_4:6336173-6336192 None:intergenic 40.0%
GATTTATGAAGCACGGACAT+TGG - chr5_4:6336470-6336489 None:intergenic 40.0%
CATCGTGGATTTATGAAGCA+CGG - chr5_4:6336477-6336496 None:intergenic 40.0%
GTATTCTTCTCTCTTCATCG+TGG - chr5_4:6336492-6336511 None:intergenic 40.0%
AATGTGTGGTTGCACGAATA+TGG + chr5_4:6336804-6336823 Msa0833150:intron 40.0%
! GTGTGGTCATCTCATTTTCT+AGG + chr5_4:6336916-6336935 Msa0833150:intron 40.0%
! TGGTCATCTCATTTTCTAGG+AGG + chr5_4:6336919-6336938 Msa0833150:intron 40.0%
!! GGTCATCTCATTTTCTAGGA+GGG + chr5_4:6336920-6336939 Msa0833150:intron 40.0%
CATATGCCAGATAGATAGAG+AGG - chr5_4:6336981-6337000 None:intergenic 40.0%
AGCAACTTCAAGTGAATGCA+AGG - chr5_4:6337008-6337027 None:intergenic 40.0%
TGTGAAGGGTTGAAGAAAAC+TGG - chr5_4:6337124-6337143 None:intergenic 40.0%
CAGTTAGCACCATATGTGAA+GGG - chr5_4:6337138-6337157 None:intergenic 40.0%
TCTTTGCTTGGTTGAAAGCT+TGG - chr5_4:6337433-6337452 None:intergenic 40.0%
AAACGAAGAGTTTGTGAGCA+TGG + chr5_4:6337610-6337629 Msa0833150:CDS 40.0%
TGTGGATGCCTCCAAAAAAA+TGG + chr5_4:6337754-6337773 Msa0833150:CDS 40.0%
TCGTTCCTATAGTGAAAAGG+GGG + chr5_4:6337985-6338004 Msa0833150:CDS 40.0%
GCTAAGATCAATGTTACTCC+GGG + chr5_4:6338040-6338059 Msa0833150:CDS 40.0%
TGGTTCAATACAGTGACAAG+AGG - chr5_4:6338068-6338087 Msa0833160:three_prime_UTR 40.0%
TCTTGTCACTGTATTGAACC+AGG + chr5_4:6338067-6338086 Msa0833150:CDS 40.0%
AAACAAAAACGGAACCATCC+TGG - chr5_4:6338088-6338107 Msa0833160:three_prime_UTR 40.0%
! CCTGTAGTAATGGAACGAAT+CGG + chr5_4:6338133-6338152 Msa0833150:CDS 40.0%
! CTGTAGTAATGGAACGAATC+GGG + chr5_4:6338134-6338153 Msa0833150:CDS 40.0%
TGATGAATCTGACATCACTC+AGG + chr5_4:6338235-6338254 Msa0833150:three_prime_UTR 40.0%
TGTATATTGCTCAAGAGGAC+GGG + chr5_4:6338281-6338300 Msa0833150:three_prime_UTR 40.0%
CGTTAAAGGTTACAAAGGAG+AGG - chr5_4:6338402-6338421 Msa0833160:three_prime_UTR 40.0%
GCAAAGAGGATTCAAATCGT+AGG + chr5_4:6338455-6338474 Msa0833150:three_prime_UTR 40.0%
! ATTGACACTGGTTATTAGGG+GGG - chr5_4:6338628-6338647 Msa0833160:three_prime_UTR 40.0%
! GATTGACACTGGTTATTAGG+GGG - chr5_4:6338629-6338648 Msa0833160:three_prime_UTR 40.0%
! GGATTGACACTGGTTATTAG+GGG - chr5_4:6338630-6338649 Msa0833160:three_prime_UTR 40.0%
! CGGATTGACACTGGTTATTA+GGG - chr5_4:6338631-6338650 Msa0833160:three_prime_UTR 40.0%
CCTAATAACCAGTGTCAATC+CGG + chr5_4:6338629-6338648 Msa0833150:three_prime_UTR 40.0%
TTCTTCAAGGTCTATGTGGA+AGG - chr5_4:6338659-6338678 Msa0833160:three_prime_UTR 40.0%
TACTCTAACTCTGAGTTGCA+AGG + chr5_4:6338696-6338715 Msa0833150:three_prime_UTR 40.0%
! TCCTTTAAGAAGACCAAGCA+TGG - chr5_4:6338790-6338809 Msa0833160:CDS 40.0%
! AGGGCTAATTTGTACTTCAG+AGG - chr5_4:6338814-6338833 Msa0833160:CDS 40.0%
!!! CAGTTTCGGTGTCATTCTTT+TGG - chr5_4:6339000-6339019 Msa0833160:CDS 40.0%
CAACATATCCAACAGCATTG+TGG + chr5_4:6339069-6339088 Msa0833150:three_prime_UTR 40.0%
! AGGATTTAAGGTTGAGGTGA+AGG + chr5_4:6339189-6339208 Msa0833150:three_prime_UTR 40.0%
TTAAGGTTGAGGTGAAGGAT+CGG + chr5_4:6339194-6339213 Msa0833150:three_prime_UTR 40.0%
TTGCAGTTCCAAGTGCAATT+TGG + chr5_4:6339252-6339271 Msa0833150:three_prime_UTR 40.0%
AGAAGGTTCCAAATTGCACT+TGG - chr5_4:6339263-6339282 Msa0833160:CDS 40.0%
GAAAATGAAATTGGGCGACT+AGG - chr5_4:6339455-6339474 Msa0833160:CDS 40.0%
GTGAAGAAGCTTGAGACTTT+GGG - chr5_4:6339503-6339522 Msa0833160:CDS 40.0%
AGTGAAGAAGCTTGAGACTT+TGG - chr5_4:6339504-6339523 Msa0833160:CDS 40.0%
TGAGACGTCACCTTCAAAAT+CGG + chr5_4:6339529-6339548 Msa0833150:three_prime_UTR 40.0%
AAATATGAAGATTGGGAGGC+AGG - chr5_4:6339620-6339639 Msa0833160:CDS 40.0%
GATGATTCTGTTGATCCTAG+AGG + chr5_4:6339689-6339708 Msa0833150:three_prime_UTR 40.0%
! ATTGTTGAGAGTACACCTCT+AGG - chr5_4:6339707-6339726 Msa0833160:CDS 40.0%
GGTGACCATCATGAGTATTA+GGG - chr5_4:6339765-6339784 Msa0833160:CDS 40.0%
TGGTGACCATCATGAGTATT+AGG - chr5_4:6339766-6339785 Msa0833160:CDS 40.0%
! GATTCTAACTGGGGTTTGTT+TGG - chr5_4:6339786-6339805 Msa0833160:CDS 40.0%
GATATCACTTGCTCTGCAAA+CGG - chr5_4:6339890-6339909 Msa0833160:CDS 40.0%
GCAGAGCAAGTGATATCTAA+AGG + chr5_4:6339893-6339912 Msa0833150:three_prime_UTR 40.0%
ACCGCAGAGAAAAGGATTAT+TGG + chr5_4:6339919-6339938 Msa0833150:three_prime_UTR 40.0%
CTCTCATTCAACAATCTCTC+TGG - chr5_4:6339995-6340014 Msa0833160:CDS 40.0%
CTAGGAATTGGATCCTTGAT+AGG + chr5_4:6340089-6340108 Msa0833150:three_prime_UTR 40.0%
ATAGGTTTCCTAGGCTTGAA+GGG + chr5_4:6340107-6340126 Msa0833150:three_prime_UTR 40.0%
ATGCATCATAACCAGCTCAA+GGG - chr5_4:6340139-6340158 Msa0833160:CDS 40.0%
CTGGTTATGATGCATGTCAA+GGG + chr5_4:6340144-6340163 Msa0833150:three_prime_UTR 40.0%
CTCACCGTCTAAGTTATTAC+CGG + chr5_4:6340204-6340223 Msa0833150:three_prime_UTR 40.0%
GTCTCCGGTAATAACTTAGA+CGG - chr5_4:6340211-6340230 Msa0833160:CDS 40.0%
CATTGAACTGCTTGAATTGC+TGG - chr5_4:6340407-6340426 Msa0833160:CDS 40.0%
TCAAGAATTGCGAGGACTAT+TGG - chr5_4:6340485-6340504 Msa0833160:CDS 40.0%
GAACTTAAAGCTCTTGTCCT+TGG - chr5_4:6340545-6340564 Msa0833160:CDS 40.0%
CTTGCATCTAGTTATGCTAG+AGG + chr5_4:6340564-6340583 Msa0833150:three_prime_UTR 40.0%
GCTTCAGGGAATAATTTGGA+TGG - chr5_4:6340598-6340617 Msa0833160:CDS 40.0%
TAGTGGTCTTTGATGCTTCA+GGG - chr5_4:6340612-6340631 Msa0833160:CDS 40.0%
TTAGTGGTCTTTGATGCTTC+AGG - chr5_4:6340613-6340632 Msa0833160:CDS 40.0%
TGCATGTAGTGAGAGATTAG+TGG - chr5_4:6340629-6340648 Msa0833160:CDS 40.0%
TCACTACATGCAGTGATATC+AGG + chr5_4:6340637-6340656 Msa0833150:three_prime_UTR 40.0%
GGAATGTCACATAGTCTAGA+AGG + chr5_4:6340853-6340872 Msa0833150:three_prime_UTR 40.0%
GTGAATTGCTCTAACCTTGA+AGG - chr5_4:6340916-6340935 Msa0833160:CDS 40.0%
TGGTTCAATTCCTGTGTCTT+TGG - chr5_4:6340938-6340957 Msa0833160:CDS 40.0%
CAGTACCTAAACAAAGCTGA+AGG + chr5_4:6341000-6341019 Msa0833150:three_prime_UTR 40.0%
GGCAAATCACCAATGAAATC+CGG + chr5_4:6341072-6341091 Msa0833150:three_prime_UTR 40.0%
GCAAATCACCAATGAAATCC+GGG + chr5_4:6341073-6341092 Msa0833150:three_prime_UTR 40.0%
ATGCTGATCTTCACTCATTG+TGG - chr5_4:6341137-6341156 Msa0833160:CDS 40.0%
! TTTGGAACACTAGCTTAGGT+GGG - chr5_4:6341248-6341267 Msa0833160:CDS 40.0%
CACACAATACCTTGAGTTCA+TGG - chr5_4:6341347-6341366 Msa0833160:CDS 40.0%
!! CATGAACTCAAGGTATTGTG+TGG + chr5_4:6341345-6341364 Msa0833150:three_prime_UTR 40.0%
GTTCAAAGGTAACATCACTG+AGG - chr5_4:6341373-6341392 Msa0833160:CDS 40.0%
! GCTTCATTCTCTGCTTGTTT+TGG - chr5_4:6341443-6341462 Msa0833160:CDS 40.0%
! GTGAGTTGGCAATGGTTTAG+TGG + chr5_4:6335406-6335425 Msa0833150:five_prime_UTR 45.0%
AAGGAGTTGTCCAAGGAACA+GGG + chr5_4:6335458-6335477 Msa0833150:CDS 45.0%
AAAAAAGTCCCCCTGTTCCT+TGG - chr5_4:6335471-6335490 None:intergenic 45.0%
!!! AAGGAACAGGGGGACTTTTT+TGG + chr5_4:6335470-6335489 Msa0833150:CDS 45.0%
!!! AGGAACAGGGGGACTTTTTT+GGG + chr5_4:6335471-6335490 Msa0833150:CDS 45.0%
ACCGCATCCGTTCATATTTC+GGG + chr5_4:6335640-6335659 Msa0833150:CDS 45.0%
ACCCGAAATATGAACGGATG+CGG - chr5_4:6335644-6335663 None:intergenic 45.0%
! CATCCGTTCATATTTCGGGT+CGG + chr5_4:6335644-6335663 Msa0833150:CDS 45.0%
! ATCCGTTCATATTTCGGGTC+GGG + chr5_4:6335645-6335664 Msa0833150:CDS 45.0%
CCAAGCTGAATAACACCATC+AGG - chr5_4:6335754-6335773 None:intergenic 45.0%
!! CCTGATGGTGTTATTCAGCT+TGG + chr5_4:6335751-6335770 Msa0833150:CDS 45.0%
TTAGACACATGTCGAACACC+GGG - chr5_4:6335831-6335850 None:intergenic 45.0%
CTTAGACACATGTCGAACAC+CGG - chr5_4:6335832-6335851 None:intergenic 45.0%
! CGAGGTGTTAGTATCGTGTT+TGG + chr5_4:6335914-6335933 Msa0833150:intron 45.0%
! CGGTGTGTGTCAGTGTTTTA+TGG + chr5_4:6335941-6335960 Msa0833150:intron 45.0%
!! AATGGAAGCGCTGCTATACT+AGG + chr5_4:6336060-6336079 Msa0833150:CDS 45.0%
!! ATGGAAGCGCTGCTATACTA+GGG + chr5_4:6336061-6336080 Msa0833150:CDS 45.0%
CTAGGGACACCATCAAATTG+TGG + chr5_4:6336078-6336097 Msa0833150:CDS 45.0%
CTGAGGCAACCACAATTTGA+TGG - chr5_4:6336090-6336109 None:intergenic 45.0%
TAGCAAGGTCAGTGATACTG+AGG - chr5_4:6336107-6336126 None:intergenic 45.0%
! ACTGACCTTGCTACTTACCA+TGG + chr5_4:6336114-6336133 Msa0833150:CDS 45.0%
CATGGTCTTCCAACAGATCA+TGG - chr5_4:6336721-6336740 None:intergenic 45.0%
CATGATCTGTTGGAAGACCA+TGG + chr5_4:6336719-6336738 Msa0833150:intron 45.0%
!! AGCTTGCTAGATAGATGTCG+CGG + chr5_4:6336770-6336789 Msa0833150:intron 45.0%
CTAATCATACAGGTTGTGGC+TGG + chr5_4:6337073-6337092 Msa0833150:intron 45.0%
GCAGTTAGCACCATATGTGA+AGG - chr5_4:6337139-6337158 None:intergenic 45.0%
! TCACATATGGTGCTAACTGC+AGG + chr5_4:6337139-6337158 Msa0833150:CDS 45.0%
AGCTTCTGCCTAGCAGATAA+TGG + chr5_4:6337187-6337206 Msa0833150:CDS 45.0%
GCTTTGATGAGGCCGTAAAA+TGG + chr5_4:6337333-6337352 Msa0833150:intron 45.0%
TGTGAGCATGGCAGAAATCA+TGG + chr5_4:6337622-6337641 Msa0833150:CDS 45.0%
CATGGCAGAAATCATGGAAG+CGG + chr5_4:6337628-6337647 Msa0833150:CDS 45.0%
TGGAAGCGGAAGATCATGAT+CGG + chr5_4:6337642-6337661 Msa0833150:CDS 45.0%
TGTGGAAGGATTAGAGCAGT+TGG + chr5_4:6337901-6337920 Msa0833150:CDS 45.0%
GTGGAAGGATTAGAGCAGTT+GGG + chr5_4:6337902-6337921 Msa0833150:CDS 45.0%
! CAGTTCCCCCTTTTCACTAT+AGG - chr5_4:6337993-6338012 Msa0833160:three_prime_UTR 45.0%
CTATAGTGAAAAGGGGGAAC+TGG + chr5_4:6337991-6338010 Msa0833150:CDS 45.0%
ATACAGTGACAAGAGGATCC+CGG - chr5_4:6338061-6338080 Msa0833160:three_prime_UTR 45.0%
GTCACTGTATTGAACCAGGA+TGG + chr5_4:6338071-6338090 Msa0833150:CDS 45.0%
! CCGATTCGTTCCATTACTAC+AGG - chr5_4:6338136-6338155 Msa0833160:three_prime_UTR 45.0%
! TTCGAGACTACAAGTTGACG+TGG + chr5_4:6338163-6338182 Msa0833150:exon 45.0%
! TTGACACTGGTTATTAGGGG+GGG - chr5_4:6338627-6338646 Msa0833160:three_prime_UTR 45.0%
! CCGGATTGACACTGGTTATT+AGG - chr5_4:6338632-6338651 Msa0833160:three_prime_UTR 45.0%
AGATTCCGATCCATCTCTGA+TGG + chr5_4:6338740-6338759 Msa0833150:three_prime_UTR 45.0%
TGAGTCCATCAGAGATGGAT+CGG - chr5_4:6338748-6338767 Msa0833160:CDS 45.0%
!! ATCCATCTCTGATGGACTCA+AGG + chr5_4:6338748-6338767 Msa0833150:three_prime_UTR 45.0%
AAGCATGGCTGAGATTGTTC+AGG - chr5_4:6338775-6338794 Msa0833160:CDS 45.0%
TGAACAATCTCAGCCATGCT+TGG + chr5_4:6338774-6338793 Msa0833150:three_prime_UTR 45.0%
! GCCATGCTTGGTCTTCTTAA+AGG + chr5_4:6338786-6338805 Msa0833150:three_prime_UTR 45.0%
CAGCTTCAAACTGCTTTGAC+AGG - chr5_4:6338884-6338903 Msa0833160:CDS 45.0%
CAAAACAACAACCTCATGCG+TGG + chr5_4:6338938-6338957 Msa0833150:three_prime_UTR 45.0%
!!! TTTTGGAGCTAGTTACAGGG+AGG - chr5_4:6338983-6339002 Msa0833160:CDS 45.0%
! CAGAGTTGGCTCAAAGCTTT+AGG - chr5_4:6339046-6339065 Msa0833160:CDS 45.0%
!! CTAAAGCTTTGAGCCAACTC+TGG + chr5_4:6339044-6339063 Msa0833150:three_prime_UTR 45.0%
TGGATATGTTGCACCAGAGT+TGG - chr5_4:6339060-6339079 Msa0833160:CDS 45.0%
TCCAACAGCATTGTGGAACT+TGG + chr5_4:6339076-6339095 Msa0833150:three_prime_UTR 45.0%
ACCAAGTTCCACAATGCTGT+TGG - chr5_4:6339080-6339099 Msa0833160:CDS 45.0%
! ATCATGGTGGAGATAGGCAA+GGG + chr5_4:6339226-6339245 Msa0833150:three_prime_UTR 45.0%
CAGCACAAGTAGAGGCAATA+GGG - chr5_4:6339300-6339319 Msa0833160:CDS 45.0%
GGGAAGGATCAGAAATCAAG+AGG - chr5_4:6339483-6339502 Msa0833160:CDS 45.0%
! AGAAGCTTGAGACTTTGGGA+AGG - chr5_4:6339499-6339518 Msa0833160:CDS 45.0%
CTTGACAAGGAGTCGTTGAT+AGG - chr5_4:6339584-6339603 Msa0833160:CDS 45.0%
CTCCTTGTCAAGCAATGCTT+TGG + chr5_4:6339592-6339611 Msa0833150:three_prime_UTR 45.0%
!! CACCAAAGCATTGCTTGACA+AGG - chr5_4:6339597-6339616 Msa0833160:CDS 45.0%
TGCAGCTGTGATTCTAACTG+GGG - chr5_4:6339795-6339814 Msa0833160:CDS 45.0%
CTGCAGCTGTGATTCTAACT+GGG - chr5_4:6339796-6339815 Msa0833160:CDS 45.0%
AATCACAGCTGCAGCAACAA+TGG + chr5_4:6339802-6339821 Msa0833150:three_prime_UTR 45.0%
! CTGAGAAGTTTAGTCTTCCC+AGG + chr5_4:6339842-6339861 Msa0833150:three_prime_UTR 45.0%
! AGAAGTTTAGTCTTCCCAGG+AGG + chr5_4:6339845-6339864 Msa0833150:three_prime_UTR 45.0%
GGATCCTTGATAGGTTTCCT+AGG + chr5_4:6340098-6340117 Msa0833150:three_prime_UTR 45.0%
CAAGCCTAGGAAACCTATCA+AGG - chr5_4:6340105-6340124 Msa0833160:CDS 45.0%
GATAGGTTTCCTAGGCTTGA+AGG + chr5_4:6340106-6340125 Msa0833150:three_prime_UTR 45.0%
CATGCATCATAACCAGCTCA+AGG - chr5_4:6340140-6340159 Msa0833160:CDS 45.0%
GCTGGTTATGATGCATGTCA+AGG + chr5_4:6340143-6340162 Msa0833150:three_prime_UTR 45.0%
! CATTCTTTCGTGTTGCTGCA+GGG - chr5_4:6340236-6340255 Msa0833160:intron 45.0%
! TCATTCTTTCGTGTTGCTGC+AGG - chr5_4:6340237-6340256 Msa0833160:intron 45.0%
AAACCTCATCGGCGAAATTC+CGG - chr5_4:6340371-6340390 Msa0833160:CDS 45.0%
GAATTTCGCCGATGAGGTTT+AGG + chr5_4:6340371-6340390 Msa0833150:three_prime_UTR 45.0%
ATAGGCGGAATGATTCCTGA+GGG - chr5_4:6340439-6340458 Msa0833160:CDS 45.0%
CTCTTCCACACTACCTGATA+AGG + chr5_4:6340798-6340817 Msa0833150:three_prime_UTR 45.0%
CAATGCCTTATCAGGTAGTG+TGG - chr5_4:6340806-6340825 Msa0833160:CDS 45.0%
CTGAGAAGCAATGCCTTATC+AGG - chr5_4:6340814-6340833 Msa0833160:CDS 45.0%
GAGCAATTCACCAAAGACAC+AGG + chr5_4:6340925-6340944 Msa0833150:three_prime_UTR 45.0%
AATGAAATCCGGGATCGAAC+CGG + chr5_4:6341083-6341102 Msa0833150:three_prime_UTR 45.0%
TTCAGCTCCAATGCGTTATC+CGG - chr5_4:6341105-6341124 Msa0833160:CDS 45.0%
! TTGGAACACTAGCTTAGGTG+GGG - chr5_4:6341247-6341266 Msa0833160:CDS 45.0%
!! CTTTGGAACACTAGCTTAGG+TGG - chr5_4:6341249-6341268 Msa0833160:CDS 45.0%
!! GTGCTTTGGAACACTAGCTT+AGG - chr5_4:6341252-6341271 Msa0833160:CDS 45.0%
ACACCTGTGTAACCTTGACA+TGG + chr5_4:6341306-6341325 Msa0833150:three_prime_UTR 45.0%
CACCTGTGTAACCTTGACAT+GGG + chr5_4:6341307-6341326 Msa0833150:three_prime_UTR 45.0%
! TTGAGTTCATGGGTTTCTGG+TGG - chr5_4:6341336-6341355 Msa0833160:CDS 45.0%
ACCAGAAACCCATGAACTCA+AGG + chr5_4:6341335-6341354 Msa0833150:three_prime_UTR 45.0%
ACCTTGAGTTCATGGGTTTC+TGG - chr5_4:6341339-6341358 Msa0833160:CDS 45.0%
! TGGCTTTTGTGGGGTTGTAA+AGG + chr5_4:6341835-6341854 Msa0833150:three_prime_UTR 45.0%
! GGCTTTTGTGGGGTTGTAAA+GGG + chr5_4:6341836-6341855 Msa0833150:three_prime_UTR 45.0%
!!! TAATTTTATTTATATATAGA+TGG + chr5_4:6336951-6336970 Msa0833150:intron 5.0%
!!! AATTTTATTTATATATAGAT+GGG + chr5_4:6336952-6336971 Msa0833150:intron 5.0%
!! AAATTCTATATAAAAAAAAA+TGG + chr5_4:6338560-6338579 Msa0833150:three_prime_UTR 5.0%
CCTTGGACAACTCCTTGCAA+AGG - chr5_4:6335454-6335473 None:intergenic 50.0%
CCTTTGCAAGGAGTTGTCCA+AGG + chr5_4:6335451-6335470 Msa0833150:CDS 50.0%
CAAGGAGTTGTCCAAGGAAC+AGG + chr5_4:6335457-6335476 Msa0833150:CDS 50.0%
AGGAGTTGTCCAAGGAACAG+GGG + chr5_4:6335459-6335478 Msa0833150:CDS 50.0%
!!! GGAACAGGGGGACTTTTTTG+GGG + chr5_4:6335472-6335491 Msa0833150:CDS 50.0%
TGTTGGAAGGAGGAGATTGG+CGG - chr5_4:6335555-6335574 None:intergenic 50.0%
GGTTGTTGGAAGGAGGAGAT+TGG - chr5_4:6335558-6335577 None:intergenic 50.0%
GACCCGACCCGAAATATGAA+CGG - chr5_4:6335650-6335669 None:intergenic 50.0%
TCTTCTCTGTAGGCATGTCC+CGG + chr5_4:6335810-6335829 Msa0833150:intron 50.0%
CGGTCGTAGACTGTAATGTG+TGG + chr5_4:6336790-6336809 Msa0833150:intron 50.0%
GGGTGTCCTCTCTATCTATC+TGG + chr5_4:6336972-6336991 Msa0833150:intron 50.0%
GACTGTTACCCAGGACTATG+AGG - chr5_4:6337235-6337254 None:intergenic 50.0%
CCTCATCAAAGCTGCACCAT+AGG - chr5_4:6337325-6337344 None:intergenic 50.0%
! CCTATGGTGCAGCTTTGATG+AGG + chr5_4:6337322-6337341 Msa0833150:intron 50.0%
AGGCCGTAAAATGGCGATCT+GGG + chr5_4:6337342-6337361 Msa0833150:CDS 50.0%
!! CACCCCAGATCGCCATTTTA+CGG - chr5_4:6337348-6337367 None:intergenic 50.0%
ATTTGCCAGCAGGGTTCGAA+GGG - chr5_4:6337493-6337512 None:intergenic 50.0%
AATTTGCCAGCAGGGTTCGA+AGG - chr5_4:6337494-6337513 None:intergenic 50.0%
GGAAGCGGAAGATCATGATC+GGG + chr5_4:6337643-6337662 Msa0833150:CDS 50.0%
ATTGAGTGCACCAGAAGCAG+TGG + chr5_4:6337926-6337945 Msa0833150:CDS 50.0%
TTGCTCAAGAGGACGGGTAT+TGG + chr5_4:6338287-6338306 Msa0833150:three_prime_UTR 50.0%
AAGGAGATCCGGATTGACAC+TGG - chr5_4:6338640-6338659 Msa0833160:three_prime_UTR 50.0%
GGTCTATGTGGAAGGAGATC+CGG - chr5_4:6338651-6338670 Msa0833160:three_prime_UTR 50.0%
GTCCTTGAGTCCATCAGAGA+TGG - chr5_4:6338753-6338772 Msa0833160:CDS 50.0%
! GGAAAGTGTAACCACGCATG+AGG - chr5_4:6338952-6338971 Msa0833160:CDS 50.0%
TGCGTGGTTACACTTTCCAC+AGG + chr5_4:6338954-6338973 Msa0833150:three_prime_UTR 50.0%
CCAGCACAAGTAGAGGCAAT+AGG - chr5_4:6339301-6339320 Msa0833160:CDS 50.0%
CCTATTGCCTCTACTTGTGC+TGG + chr5_4:6339298-6339317 Msa0833150:three_prime_UTR 50.0%
CTACATGGGCTTGGATATCC+TGG - chr5_4:6339326-6339345 Msa0833160:CDS 50.0%
TTGATAGGAGGCGGATCGAT+TGG - chr5_4:6339569-6339588 Msa0833160:CDS 50.0%
! AAGGAGTCGTTGATAGGAGG+CGG - chr5_4:6339578-6339597 Msa0833160:CDS 50.0%
! GACAAGGAGTCGTTGATAGG+AGG - chr5_4:6339581-6339600 Msa0833160:CDS 50.0%
TCGGGCCCTAATACTCATGA+TGG + chr5_4:6339757-6339776 Msa0833150:three_prime_UTR 50.0%
GCTGCAGCTGTGATTCTAAC+TGG - chr5_4:6339797-6339816 Msa0833160:CDS 50.0%
!! AAAGGAGCACCGCAGAGAAA+AGG + chr5_4:6339911-6339930 Msa0833150:three_prime_UTR 50.0%
GGTTCAATCCCTCCTTCACT+TGG - chr5_4:6340046-6340065 Msa0833160:CDS 50.0%
TCAATGTTGCCAAACCCCTC+AGG + chr5_4:6340421-6340440 Msa0833150:three_prime_UTR 50.0%
GGAATGATTCCTGAGGGGTT+TGG - chr5_4:6340433-6340452 Msa0833160:CDS 50.0%
TAGGCGGAATGATTCCTGAG+GGG - chr5_4:6340438-6340457 Msa0833160:CDS 50.0%
GATAGGCGGAATGATTCCTG+AGG - chr5_4:6340440-6340459 Msa0833160:CDS 50.0%
TGCAGTCCTAGGATGCTGAA+TGG + chr5_4:6340709-6340728 Msa0833150:three_prime_UTR 50.0%
TTGGCTCCATTCAGCATCCT+AGG - chr5_4:6340718-6340737 Msa0833160:CDS 50.0%
! AGTGTGGAAGAGCACGTTTC+TGG - chr5_4:6340790-6340809 Msa0833160:CDS 50.0%
GGTTCGATCCCGGATTTCAT+TGG - chr5_4:6341084-6341103 Msa0833160:CDS 50.0%
GATCGAACCGGATAACGCAT+TGG + chr5_4:6341095-6341114 Msa0833150:three_prime_UTR 50.0%
TCTCAGGGTTGAAGAGGTTG+AGG - chr5_4:6341209-6341228 Msa0833160:CDS 50.0%
TGTTGTCACCAGCACTCTCA+GGG - chr5_4:6341224-6341243 Msa0833160:CDS 50.0%
GACCCATGTCAAGGTTACAC+AGG - chr5_4:6341312-6341331 Msa0833160:CDS 50.0%
GGAGTTGTCCAAGGAACAGG+GGG + chr5_4:6335460-6335479 Msa0833150:CDS 55.0%
TTCCAACAACCTTCCGCCTC+CGG + chr5_4:6335567-6335586 Msa0833150:CDS 55.0%
! TGAGAGAGAGCGTGACAAGG+CGG - chr5_4:6335602-6335621 None:intergenic 55.0%
! AGCTGAGAGAGAGCGTGACA+AGG - chr5_4:6335605-6335624 None:intergenic 55.0%
TGTCACGCTCTCTCTCAGCT+CGG + chr5_4:6335605-6335624 Msa0833150:CDS 55.0%
GACTATGAGGCGTGGGAACA+AGG - chr5_4:6337222-6337241 None:intergenic 55.0%
TTCCCACGCCTCATAGTCCT+GGG + chr5_4:6337224-6337243 Msa0833150:CDS 55.0%
TACCCAGGACTATGAGGCGT+GGG - chr5_4:6337229-6337248 None:intergenic 55.0%
TTACCCAGGACTATGAGGCG+TGG - chr5_4:6337230-6337249 None:intergenic 55.0%
GAGGCCGTAAAATGGCGATC+TGG + chr5_4:6337341-6337360 Msa0833150:CDS 55.0%
GGCCGTAAAATGGCGATCTG+GGG + chr5_4:6337343-6337362 Msa0833150:CDS 55.0%
CGTAAAATGGCGATCTGGGG+TGG + chr5_4:6337346-6337365 Msa0833150:CDS 55.0%
TCAAACCCTTCGAACCCTGC+TGG + chr5_4:6337485-6337504 Msa0833150:CDS 55.0%
GCAAAAGCCACCACTGCTTC+TGG - chr5_4:6337939-6337958 Msa0833160:three_prime_UTR 55.0%
! CAGTGGTGGCTTTTGCTGCT+GGG + chr5_4:6337943-6337962 Msa0833150:CDS 55.0%
AAAAGGGGGAACTGGAGCTC+TGG + chr5_4:6337999-6338018 Msa0833150:CDS 55.0%
AAAGGGGGAACTGGAGCTCT+GGG + chr5_4:6338000-6338019 Msa0833150:CDS 55.0%
GTTATTAGGGGGGGAAGGAG+AGG - chr5_4:6338618-6338637 Msa0833160:three_prime_UTR 55.0%
! CACTGGTTATTAGGGGGGGA+AGG - chr5_4:6338623-6338642 Msa0833160:three_prime_UTR 55.0%
AGTTACAGGGAGGAAGCCTG+TGG - chr5_4:6338973-6338992 Msa0833160:CDS 55.0%
AGGTTGAGGTGAAGGATCGG+AGG + chr5_4:6339197-6339216 Msa0833150:three_prime_UTR 55.0%
GGTTGAGGTGAAGGATCGGA+GGG + chr5_4:6339198-6339217 Msa0833150:three_prime_UTR 55.0%
CCTGGAACCAGCACAAGTAG+AGG - chr5_4:6339308-6339327 Msa0833160:CDS 55.0%
!! CCTCTACTTGTGCTGGTTCC+AGG + chr5_4:6339305-6339324 Msa0833150:three_prime_UTR 55.0%
GTCTTCCCAGGAGGTGAAGA+TGG + chr5_4:6339854-6339873 Msa0833150:three_prime_UTR 55.0%
GATCGCCATCTTCACCTCCT+GGG - chr5_4:6339862-6339881 Msa0833160:CDS 55.0%
AGATCGCCATCTTCACCTCC+TGG - chr5_4:6339863-6339882 Msa0833160:CDS 55.0%
!! GGAAGCATCCCTTCAAGCCT+AGG - chr5_4:6340118-6340137 Msa0833160:CDS 55.0%
AAGGGATGCTTCCCTTGAGC+TGG + chr5_4:6340125-6340144 Msa0833150:three_prime_UTR 55.0%
TGTTGCTGCAGGGATGTCTC+CGG - chr5_4:6340226-6340245 Msa0833160:intron 55.0%
! TGCGTTATCCGGTTCGATCC+CGG - chr5_4:6341094-6341113 Msa0833160:CDS 55.0%
CAGCACTCTCAGGGTTGAAG+AGG - chr5_4:6341215-6341234 Msa0833160:CDS 55.0%
! CTCTTCAACCCTGAGAGTGC+TGG + chr5_4:6341213-6341232 Msa0833150:three_prime_UTR 55.0%
GTGTTGTCACCAGCACTCTC+AGG - chr5_4:6341225-6341244 Msa0833160:CDS 55.0%
TCTGGTGGAGACCCATGTCA+AGG - chr5_4:6341321-6341340 Msa0833160:CDS 55.0%
GGCGGAAGGTTGTTGGAAGG+AGG - chr5_4:6335565-6335584 None:intergenic 60.0%
GGAGGCGGAAGGTTGTTGGA+AGG - chr5_4:6335568-6335587 None:intergenic 60.0%
! AGAGAGAGCGTGACAAGGCG+GGG - chr5_4:6335600-6335619 None:intergenic 60.0%
! GAGAGAGAGCGTGACAAGGC+GGG - chr5_4:6335601-6335620 None:intergenic 60.0%
GTCACGCTCTCTCTCAGCTC+GGG + chr5_4:6335606-6335625 Msa0833150:CDS 60.0%
TCTCTCTCAGCTCGGGTCAG+AGG + chr5_4:6335613-6335632 Msa0833150:CDS 60.0%
GTTCCCACGCCTCATAGTCC+TGG + chr5_4:6337223-6337242 Msa0833150:CDS 60.0%
GAGTGCACCAGAAGCAGTGG+TGG + chr5_4:6337929-6337948 Msa0833150:CDS 60.0%
! GCAGTGGTGGCTTTTGCTGC+TGG + chr5_4:6337942-6337961 Msa0833150:CDS 60.0%
CAGCCGGAATTTCGCCGATG+AGG + chr5_4:6340365-6340384 Msa0833150:three_prime_UTR 60.0%
CTCCGGAGGCGGAAGGTTGT+TGG - chr5_4:6335572-6335591 None:intergenic 65.0%
! AGAGAGCGTGACAAGGCGGG+GGG - chr5_4:6335598-6335617 None:intergenic 65.0%
! GAGAGAGCGTGACAAGGCGG+GGG - chr5_4:6335599-6335618 None:intergenic 65.0%
! GAGAGCGTGACAAGGCGGGG+GGG - chr5_4:6335597-6335616 None:intergenic 70.0%
GACAAGGCGGGGGGGAGCTC+CGG - chr5_4:6335589-6335608 None:intergenic 75.0%
! GGGGGAGCTCCGGAGGCGGA+AGG - chr5_4:6335579-6335598 None:intergenic 80.0%
! AAGGCGGGGGGGAGCTCCGG+AGG - chr5_4:6335586-6335605 None:intergenic 80.0%
! GCGGGGGGGAGCTCCGGAGG+CGG - chr5_4:6335583-6335602 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6335226 6341891 6335226 ID=Msa0833150;Name=Msa0833150
chr5_4 mRNA 6335226 6341891 6335226 ID=Msa0833150-mRNA-1;Parent=Msa0833150;Name=Msa0833150-mRNA-1;_AED=0.04;_eAED=0.04;_QI=210|1|1|1|0.75|0.6|5|3612|497
chr5_4 exon 6335226 6335789 6335226 ID=Msa0833150-mRNA-1:exon:2715;Parent=Msa0833150-mRNA-1
chr5_4 exon 6336024 6336155 6336024 ID=Msa0833150-mRNA-1:exon:2716;Parent=Msa0833150-mRNA-1
chr5_4 exon 6337085 6337245 6337085 ID=Msa0833150-mRNA-1:exon:2717;Parent=Msa0833150-mRNA-1
chr5_4 exon 6337334 6340234 6337334 ID=Msa0833150-mRNA-1:exon:2718;Parent=Msa0833150-mRNA-1
chr5_4 exon 6340334 6341891 6340334 ID=Msa0833150-mRNA-1:exon:2719;Parent=Msa0833150-mRNA-1
chr5_4 five_prime_UTR 6335226 6335435 6335226 ID=Msa0833150-mRNA-1:five_prime_utr;Parent=Msa0833150-mRNA-1
chr5_4 CDS 6335436 6335789 6335436 ID=Msa0833150-mRNA-1:cds;Parent=Msa0833150-mRNA-1
chr5_4 CDS 6336024 6336155 6336024 ID=Msa0833150-mRNA-1:cds;Parent=Msa0833150-mRNA-1
chr5_4 CDS 6337085 6337245 6337085 ID=Msa0833150-mRNA-1:cds;Parent=Msa0833150-mRNA-1
chr5_4 CDS 6337334 6338180 6337334 ID=Msa0833150-mRNA-1:cds;Parent=Msa0833150-mRNA-1
chr5_4 three_prime_UTR 6338181 6340234 6338181 ID=Msa0833150-mRNA-1:three_prime_utr;Parent=Msa0833150-mRNA-1
chr5_4 three_prime_UTR 6340334 6341891 6340334 ID=Msa0833150-mRNA-1:three_prime_utr;Parent=Msa0833150-mRNA-1
Gene Sequence

>Msa0833150

ATGAAAATTATAGTGCCTTTGCAAGGAGTTGTCCAAGGAACAGGGGGACTTTTTTGGGGTTCAGTTATTCCTTGCGCTCTTTTCTACTTTCTTCAGCTTTATTTTAAGACACGTAACCGCCAATCTCCTCCTTCCAACAACCTTCCGCCTCCGGAGCTCCCCCCCGCCTTGTCACGCTCTCTCTCAGCTCGGGTCAGAGGCTCAACCGCATCCGTTCATATTTCGGGTCGGGTCAATTCCATAATCACAACTGACTCTCCTTATTACGTTGGTTTAAACAAAGTCGCAGATAATCCCTATCATCGGATTCATAATCCTGATGGTGTTATTCAGCTTGGTTTAGCCCAAAACACCCTATGTGTAGATTTGATTGAAGAATGGATTCGTCACAATGGAAGCGCTGCTATACTAGGGACACCATCAAATTGTGGTTGCCTCAGTATCACTGACCTTGCTACTTACCATGGATTCATGGACTTCAAAGTGGTTGTGGCTGGTTTCATGTCTCAAGTTTTGGAAAAACCAGTTTTCTTCAACCCTTCACATATGGTGCTAACTGCAGGTGCTATCCCTGCCATTGAAATTCTAAGCTTCTGCCTAGCAGATAATGGAAATGCATTCCTTGTTCCCACGCCTCATAGTCCTGGCTTTGATGAGGCCGTAAAATGGCGATCTGGGGTGGATATAGTATATGTTTCATGTCGCAGCGCTGATGACTTCAACATAAGCATAACTGCACTTGACCAAGCTTTCAACCAAGCAAAGAAACGTAGTCAAAAAGTTCGTGGAGTTATAATATCAAACCCTTCGAACCCTGCTGGCAAATTATTAAATCGAGAAACACTACTTGATCTTCTGGACTTCGCTAGAGAGAAGAACATTCATATAATCTCTAATGAAATATTTGGAGGCTCTGCTTATAGAAACGAAGAGTTTGTGAGCATGGCAGAAATCATGGAAGCGGAAGATCATGATCGGGACAGAGTTCATATAGTGTTTGATTTGGCAAATGAGCTATATGTTCCAAGTTTTAATGTAGGAGTTATCTACTCCTATAATGAGAATGTTGTGGATGCCTCCAAAAAAATGGCACAATTCTCAACTGTCTCTGCTCCAACTCAGCAATTGCTTATTACCATGATTTCAGATACAAGGTTTATTCAAGAACTCATAAAGACTAACAAGTTGAGGCTGCAAAAAATGTATAATGCATTTGTGGAAGGATTAGAGCAGTTGGGAATTGAGTGCACCAGAAGCAGTGGTGGCTTTTGCTGCTGGGCTGACATGAGTAGATTCATTCGTTCCTATAGTGAAAAGGGGGAACTGGAGCTCTGGGACAGATTGCTGAATGTAGCTAAGATCAATGTTACTCCGGGATCCTCTTGTCACTGTATTGAACCAGGATGGTTCCGTTTTTGTTTTACTACATTGACTGAAAATGATATTCCTGTAGTAATGGAACGAATCGGGAGAATTTTCGAGACTACAAGTTGA
Protein sequence

>Msa0833150

MKIIVPLQGVVQGTGGLFWGSVIPCALFYFLQLYFKTRNRQSPPSNNLPPPELPPALSRSLSARVRGSTASVHISGRVNSIITTDSPYYVGLNKVADNPYHRIHNPDGVIQLGLAQNTLCVDLIEEWIRHNGSAAILGTPSNCGCLSITDLATYHGFMDFKVVVAGFMSQVLEKPVFFNPSHMVLTAGAIPAIEILSFCLADNGNAFLVPTPHSPGFDEAVKWRSGVDIVYVSCRSADDFNISITALDQAFNQAKKRSQKVRGVIISNPSNPAGKLLNRETLLDLLDFAREKNIHIISNEIFGGSAYRNEEFVSMAEIMEAEDHDRDRVHIVFDLANELYVPSFNVGVIYSYNENVVDASKKMAQFSTVSAPTQQLLITMISDTRFIQELIKTNKLRLQKMYNAFVEGLEQLGIECTRSSGGFCCWADMSRFIRSYSEKGELELWDRLLNVAKINVTPGSSCHCIEPGWFRFCFTTLTENDIPVVMERIGRIFETTS*