Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029180 | AFK49659.1 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 5.68e-126 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029180 | sp|Q8VYK4|NFYB8_ARATH | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.80e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0029180 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002790 | Msa0029180 | 0.802530 | 5.370957e-49 | -8.615850e-47 |
| Msa0029180 | Msa0097600 | 0.820843 | 5.536003e-53 | -8.615850e-47 |
| Msa0029180 | Msa0116670 | 0.804056 | 2.593785e-49 | -8.615850e-47 |
| Msa0029180 | Msa0118710 | 0.802477 | 5.507526e-49 | -8.615850e-47 |
| Msa0029180 | Msa0124690 | 0.894152 | 3.226561e-75 | -8.615850e-47 |
| Msa0029180 | Msa0167480 | 0.851257 | 9.981308e-61 | -8.615850e-47 |
| Msa0029180 | Msa0173530 | 0.804714 | 1.892013e-49 | -8.615850e-47 |
| Msa0029180 | Msa0221030 | 0.824744 | 6.837019e-54 | -8.615850e-47 |
| Msa0029180 | Msa0262480 | 0.812143 | 4.916993e-51 | -8.615850e-47 |
| Msa0029180 | Msa0300350 | 0.815159 | 1.066610e-51 | -8.615850e-47 |
| Msa0029180 | Msa0443390 | 0.802699 | 4.957214e-49 | -8.615850e-47 |
| Msa0029180 | Msa0526540 | 0.810880 | 9.251519e-51 | -8.615850e-47 |
| Msa0029180 | Msa0576940 | 0.815533 | 8.806857e-52 | -8.615850e-47 |
| Msa0029180 | Msa0729200 | 0.802798 | 4.728215e-49 | -8.615850e-47 |
| Msa0029180 | Msa0738100 | 0.808339 | 3.251269e-50 | -8.615850e-47 |
| Msa0029180 | Msa0769590 | 0.805162 | 1.524702e-49 | -8.615850e-47 |
| Msa0029180 | Msa0785130 | 0.813661 | 2.286348e-51 | -8.615850e-47 |
| Msa0029180 | Msa0817540 | 0.837311 | 5.601540e-57 | -8.615850e-47 |
| Msa0029180 | Msa1019240 | 0.811067 | 8.424877e-51 | -8.615850e-47 |
| Msa0029180 | Msa1019260 | 0.815594 | 8.532547e-52 | -8.615850e-47 |
| Msa0029180 | Msa1126510 | 0.800125 | 1.668740e-48 | -8.615850e-47 |
| Msa0029180 | Msa1166870 | 0.820547 | 6.475442e-53 | -8.615850e-47 |
| Msa0029180 | Msa1349570 | 0.827768 | 1.303268e-54 | -8.615850e-47 |
| Msa0029180 | Msa1363330 | 0.806796 | 6.911863e-50 | -8.615850e-47 |
| Msa0029180 | Msa1386600 | 0.805805 | 1.118073e-49 | -8.615850e-47 |
| Msa0029180 | Msa1426370 | 0.805481 | 1.307431e-49 | -8.615850e-47 |
| Msa0029180 | Msa1426490 | 0.823996 | 1.025225e-53 | -8.615850e-47 |
| Msa0029180 | Msa1450280 | 0.821109 | 4.808389e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029180 | MtrunA17_Chr1g0185911 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 5.22e-130 | 361 |
| Msa0029180 | MtrunA17_Chr7g0263601 | 70.588 | 170 | 34 | 7 | 11 | 174 | 12 | 171 | 6.98e-75 | 222 |
| Msa0029180 | MtrunA17_Chr5g0446491 | 60.127 | 158 | 49 | 3 | 1 | 150 | 1 | 152 | 3.33e-59 | 182 |
| Msa0029180 | MtrunA17_Chr3g0102351 | 69.600 | 125 | 36 | 1 | 1 | 125 | 1 | 123 | 3.30e-58 | 180 |
| Msa0029180 | MtrunA17_Chr2g0290491 | 65.926 | 135 | 36 | 2 | 9 | 143 | 3 | 127 | 6.34e-58 | 179 |
| Msa0029180 | MtrunA17_Chr8g0382931 | 77.895 | 95 | 21 | 0 | 24 | 118 | 23 | 117 | 1.88e-52 | 166 |
| Msa0029180 | MtrunA17_Chr4g0076321 | 75.758 | 99 | 22 | 1 | 22 | 118 | 10 | 108 | 5.32e-51 | 160 |
| Msa0029180 | MtrunA17_Chr8g0384451 | 73.626 | 91 | 24 | 0 | 28 | 118 | 39 | 129 | 7.26e-50 | 160 |
| Msa0029180 | MtrunA17_Chr1g0195851 | 69.474 | 95 | 29 | 0 | 28 | 122 | 35 | 129 | 1.44e-47 | 153 |
| Msa0029180 | MtrunA17_Chr2g0296321 | 71.429 | 91 | 26 | 0 | 28 | 118 | 65 | 155 | 8.82e-47 | 153 |
| Msa0029180 | MtrunA17_Chr4g0067091 | 70.330 | 91 | 27 | 0 | 28 | 118 | 21 | 111 | 7.43e-46 | 149 |
| Msa0029180 | MtrunA17_Chr4g0076381 | 61.682 | 107 | 37 | 1 | 16 | 118 | 41 | 147 | 5.43e-45 | 148 |
| Msa0029180 | MtrunA17_Chr1g0165041 | 51.562 | 128 | 55 | 2 | 28 | 154 | 5 | 126 | 6.90e-43 | 141 |
| Msa0029180 | MtrunA17_Chr1g0191981 | 57.609 | 92 | 39 | 0 | 29 | 120 | 4 | 95 | 2.45e-37 | 125 |
| Msa0029180 | MtrunA17_Chr1g0159271 | 50.000 | 82 | 41 | 0 | 43 | 124 | 1 | 82 | 3.30e-24 | 91.3 |
| Msa0029180 | MtrunA17_Chr5g0446601 | 44.118 | 102 | 57 | 0 | 22 | 123 | 17 | 118 | 1.11e-23 | 92.0 |
| Msa0029180 | MtrunA17_Chr1g0159291 | 40.789 | 76 | 45 | 0 | 34 | 109 | 7 | 82 | 5.26e-19 | 77.0 |
| Msa0029180 | MtrunA17_Chr2g0307551 | 33.645 | 107 | 71 | 0 | 26 | 132 | 8 | 114 | 6.94e-19 | 79.0 |
| Msa0029180 | MtrunA17_Chr1g0158951 | 61.111 | 54 | 21 | 0 | 64 | 117 | 24 | 77 | 9.44e-19 | 77.0 |
| Msa0029180 | MtrunA17_Chr4g0062271 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 1.70e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029180 | AT2G37060.2 | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.83e-73 | 218 |
| Msa0029180 | AT2G37060.3 | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.83e-73 | 218 |
| Msa0029180 | AT2G37060.1 | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.83e-73 | 218 |
| Msa0029180 | AT2G38880.7 | 72.222 | 144 | 29 | 3 | 1 | 143 | 1 | 134 | 1.63e-68 | 205 |
| Msa0029180 | AT3G53340.5 | 68.125 | 160 | 38 | 5 | 17 | 168 | 19 | 173 | 2.12e-67 | 203 |
| Msa0029180 | AT3G53340.1 | 68.125 | 160 | 38 | 5 | 17 | 168 | 19 | 173 | 2.12e-67 | 203 |
| Msa0029180 | AT2G38880.3 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.62e-66 | 200 |
| Msa0029180 | AT2G38880.2 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.91e-66 | 199 |
| Msa0029180 | AT2G38880.1 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.91e-66 | 199 |
| Msa0029180 | AT2G38880.5 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.91e-66 | 199 |
| Msa0029180 | AT2G38880.11 | 61.538 | 169 | 29 | 4 | 1 | 143 | 1 | 159 | 2.57e-62 | 190 |
| Msa0029180 | AT2G38880.8 | 61.538 | 169 | 29 | 4 | 1 | 143 | 1 | 159 | 2.57e-62 | 190 |
| Msa0029180 | AT3G53340.3 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.46e-60 | 185 |
| Msa0029180 | AT3G53340.2 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.46e-60 | 185 |
| Msa0029180 | AT2G38880.4 | 75.630 | 119 | 19 | 2 | 1 | 118 | 1 | 110 | 4.71e-60 | 182 |
| Msa0029180 | AT3G53340.4 | 84.314 | 102 | 14 | 1 | 17 | 118 | 19 | 118 | 1.45e-59 | 181 |
| Msa0029180 | AT2G38880.9 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.77e-59 | 182 |
| Msa0029180 | AT2G38880.10 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.77e-59 | 182 |
| Msa0029180 | AT2G38880.6 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.77e-59 | 182 |
| Msa0029180 | AT4G14540.1 | 72.034 | 118 | 25 | 2 | 1 | 118 | 1 | 110 | 1.88e-58 | 180 |
| Msa0029180 | AT5G47640.1 | 75.214 | 117 | 23 | 2 | 28 | 144 | 26 | 136 | 3.79e-58 | 180 |
| Msa0029180 | AT2G13570.1 | 64.463 | 121 | 34 | 2 | 9 | 120 | 7 | 127 | 1.33e-51 | 164 |
| Msa0029180 | AT2G47810.1 | 68.085 | 94 | 30 | 0 | 24 | 117 | 46 | 139 | 3.88e-45 | 146 |
| Msa0029180 | AT5G47670.2 | 60.577 | 104 | 41 | 0 | 28 | 131 | 28 | 131 | 1.87e-44 | 146 |
| Msa0029180 | AT5G47670.1 | 60.577 | 104 | 41 | 0 | 28 | 131 | 57 | 160 | 4.27e-44 | 146 |
| Msa0029180 | AT5G47670.3 | 60.577 | 104 | 41 | 0 | 28 | 131 | 57 | 160 | 4.27e-44 | 146 |
| Msa0029180 | AT1G21970.1 | 53.913 | 115 | 52 | 1 | 26 | 139 | 56 | 170 | 9.63e-44 | 145 |
| Msa0029180 | AT1G09030.1 | 46.269 | 134 | 64 | 2 | 29 | 154 | 3 | 136 | 6.79e-39 | 130 |
| Msa0029180 | AT5G08190.2 | 38.679 | 106 | 59 | 2 | 29 | 130 | 11 | 114 | 5.83e-20 | 82.0 |
| Msa0029180 | AT5G23090.4 | 36.792 | 106 | 61 | 2 | 30 | 131 | 12 | 115 | 5.47e-19 | 79.3 |
| Msa0029180 | AT5G08190.1 | 41.860 | 86 | 48 | 1 | 29 | 114 | 11 | 94 | 1.47e-18 | 78.6 |
| Msa0029180 | AT5G23090.5 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.32e-18 | 76.6 |
| Msa0029180 | AT5G23090.2 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.32e-18 | 76.6 |
| Msa0029180 | AT5G23090.1 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.32e-18 | 76.6 |
| Msa0029180 | AT5G23090.3 | 42.029 | 69 | 38 | 1 | 46 | 114 | 15 | 81 | 2.01e-13 | 64.7 |
Find 62 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTTTCTCTTCTCTTTC+TGG | 0.035702 | 1_1:+54415374 | None:intergenic |
| ATTGTTGTTTCTCTCTTTGA+TGG | 0.244029 | 1_1:-54412233 | Msa0029180:three_prime_UTR |
| GAGAAGAGAAAGACCATTAA+TGG | 0.272230 | 1_1:-54415367 | Msa0029180:CDS |
| TAACAAATCATCTCCATTAA+TGG | 0.277036 | 1_1:+54415354 | None:intergenic |
| CATATTGCAGTTTGTTCATC+AGG | 0.293386 | 1_1:-54414751 | Msa0029180:intron |
| TTATGGGCTATGGCTACTTT+AGG | 0.294228 | 1_1:-54415334 | Msa0029180:CDS |
| TGTCAAAGCACAAATGTTCT+TGG | 0.298403 | 1_1:-54412192 | Msa0029180:three_prime_UTR |
| CGTACCTAGAAAAGTGTATT+TGG | 0.300083 | 1_1:+54416337 | None:intergenic |
| TTTATTATTTCATTTAGTTT+AGG | 0.302585 | 1_1:-54412260 | Msa0029180:three_prime_UTR |
| CATTAGCAGAATCATGAAAA+AGG | 0.328217 | 1_1:-54416022 | Msa0029180:CDS |
| TTTGCTTACAAGGCAAATAT+AGG | 0.342736 | 1_1:+54416388 | None:intergenic |
| TGATTGGATGTTTGCTTACA+AGG | 0.361057 | 1_1:+54416378 | None:intergenic |
| TAATGGAGATGATTTGTTAT+GGG | 0.363879 | 1_1:-54415350 | Msa0029180:CDS |
| TTAATGGAGATGATTTGTTA+TGG | 0.386568 | 1_1:-54415351 | Msa0029180:CDS |
| ACATATTATCTTCCCTTTAG+TGG | 0.405101 | 1_1:+54412387 | None:intergenic |
| CTAAATAGAGTTCTCAAAAC+AGG | 0.432808 | 1_1:+54412316 | None:intergenic |
| TCTCGTGGCTTTCTTCGCAT+TGG | 0.434390 | 1_1:+54416118 | None:intergenic |
| GACCTGGAGGACCGCCAACT+TGG | 0.437143 | 1_1:+54414895 | None:intergenic |
| TTAGCTGCCTTGCCCACTAA+AGG | 0.439195 | 1_1:-54412400 | Msa0029180:three_prime_UTR |
| GAGGTGCAACACAATGAAAA+TGG | 0.439869 | 1_1:+54412590 | None:intergenic |
| GCAGGTGCATCCACAACATC+TGG | 0.444089 | 1_1:-54412664 | Msa0029180:intron |
| TAGCTGCCTTGCCCACTAAA+GGG | 0.445753 | 1_1:-54412399 | Msa0029180:three_prime_UTR |
| CTTGCTAGGTACACCTTAAG+TGG | 0.449127 | 1_1:+54415292 | None:intergenic |
| TGGTAGGAAAATGGTGGAAG+AGG | 0.453397 | 1_1:+54412571 | None:intergenic |
| ACAAATGTTCTTGGAAGGAT+TGG | 0.454730 | 1_1:-54412183 | Msa0029180:three_prime_UTR |
| CTCGAGAAGAAACAATTGAT+TGG | 0.456097 | 1_1:+54416362 | None:intergenic |
| GACCAAGTTGGCGGTCCTCC+AGG | 0.458458 | 1_1:-54414897 | Msa0029180:CDS |
| ATTCTGCTAATGTTAGCTAT+AGG | 0.459912 | 1_1:+54416033 | None:intergenic |
| TGGCTTTCTTCGCATTGGTT+CGG | 0.462126 | 1_1:+54416123 | None:intergenic |
| CATATTATCTTCCCTTTAGT+GGG | 0.464109 | 1_1:+54412388 | None:intergenic |
| ATGTTCTTGGAAGGATTGGC+AGG | 0.477353 | 1_1:-54412179 | None:intergenic |
| GTTAGAAACGGTGATGGATC+TGG | 0.482572 | 1_1:-54414927 | Msa0029180:CDS |
| AGACTATATAGAACCACTTA+AGG | 0.485870 | 1_1:-54415305 | Msa0029180:CDS |
| TTTGAGCTATATTGATTCCC+AGG | 0.487521 | 1_1:-54414724 | Msa0029180:intron |
| AAAAGGCTTTACCTTCAAAT+GGG | 0.495925 | 1_1:-54416005 | Msa0029180:CDS |
| AGATGATTTGTTATGGGCTA+TGG | 0.505790 | 1_1:-54415344 | Msa0029180:CDS |
| TCCTCCAGGTCAAAATGCTC+AGG | 0.507423 | 1_1:-54414883 | Msa0029180:intron |
| GATGAACTGAAACAATGGTT+TGG | 0.515083 | 1_1:-54412521 | Msa0029180:three_prime_UTR |
| CAAAAGATGAACTGAAACAA+TGG | 0.520156 | 1_1:-54412526 | Msa0029180:three_prime_UTR |
| TATCTTCCCTTTAGTGGGCA+AGG | 0.521204 | 1_1:+54412393 | None:intergenic |
| CACAATGAAAATGGCAGGTG+AGG | 0.522585 | 1_1:+54412599 | None:intergenic |
| TGCAACACAATGAAAATGGC+AGG | 0.524060 | 1_1:+54412594 | None:intergenic |
| TTGGTTCGGTGCATCTGCCA+TGG | 0.526473 | 1_1:+54416137 | None:intergenic |
| TTACCTCTCTGAACCTTGCT+AGG | 0.526654 | 1_1:+54415278 | None:intergenic |
| AAAGCACAAATGTTCTTGGA+AGG | 0.544059 | 1_1:-54412188 | Msa0029180:three_prime_UTR |
| AGTAAAGGATCTGTTAGAAA+CGG | 0.549907 | 1_1:-54414939 | Msa0029180:CDS |
| TGTGTAGAAACTAGAAAGCA+TGG | 0.553914 | 1_1:-54412476 | Msa0029180:three_prime_UTR |
| TTCTGATAGGGTGATAGTAA+AGG | 0.555051 | 1_1:-54414954 | Msa0029180:intron |
| CACTTAAGGTGTACCTAGCA+AGG | 0.580922 | 1_1:-54415291 | Msa0029180:CDS |
| GGATCTGTTAGAAACGGTGA+TGG | 0.585242 | 1_1:-54414933 | Msa0029180:CDS |
| ATATTGCAGTTTGTTCATCA+GGG | 0.598604 | 1_1:-54414750 | Msa0029180:intron |
| TCTGTTCACCACCACTCTCG+TGG | 0.616032 | 1_1:+54416103 | None:intergenic |
| TGCGAAGAAAGCCACGAGAG+TGG | 0.627075 | 1_1:-54416114 | Msa0029180:CDS |
| GGTAGACGAGACCAAGTTGG+CGG | 0.631551 | 1_1:-54414906 | Msa0029180:CDS |
| TCTCATCATGACAAGTTGCA+TGG | 0.631594 | 1_1:+54412343 | None:intergenic |
| GTGTAGAAACTAGAAAGCAT+GGG | 0.636238 | 1_1:-54412475 | Msa0029180:three_prime_UTR |
| TCTGGTAGACGAGACCAAGT+TGG | 0.636481 | 1_1:-54414909 | Msa0029180:CDS |
| GAAGGCATAACCAGATGTTG+TGG | 0.663094 | 1_1:+54412654 | None:intergenic |
| GAAGAAAGCCACGAGAGTGG+TGG | 0.673522 | 1_1:-54416111 | Msa0029180:CDS |
| GGTGGTGAACAGAGTCCACG+TGG | 0.738315 | 1_1:-54416093 | Msa0029180:CDS |
| GAAGCAGAAGAAGAGCCACG+TGG | 0.770183 | 1_1:+54416078 | None:intergenic |
| GTACCTAGCAAGGTTCAGAG+AGG | 0.773002 | 1_1:-54415281 | Msa0029180:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTTCATTTAGTTT+AGG | - | chr1_1:54416317-54416336 | Msa0029180:intron | 10.0% |
| !!! | AAATAAAAATACTATGGTTT+TGG | + | chr1_1:54412682-54412701 | None:intergenic | 15.0% |
| !!! | GTAATATAAATTTCAGTTTT+TGG | - | chr1_1:54412862-54412881 | Msa0029180:intron | 15.0% |
| !!! | TTTTTTTATACTCTTTTAGA+TGG | - | chr1_1:54413006-54413025 | Msa0029180:intron | 15.0% |
| !!! | TTTTTTATACTCTTTTAGAT+GGG | - | chr1_1:54413007-54413026 | Msa0029180:intron | 15.0% |
| !! | AATTTCAATAATGTTCTTTA+TGG | - | chr1_1:54413426-54413445 | Msa0029180:intron | 15.0% |
| !! | GTATATTGAAAAAAAGTGAA+TGG | + | chr1_1:54412354-54412373 | None:intergenic | 20.0% |
| !!! | TTTTTTTAGTTTCTCTTAGA+TGG | - | chr1_1:54412839-54412858 | Msa0029180:intron | 20.0% |
| !!! | TTTTTTAGTTTCTCTTAGAT+GGG | - | chr1_1:54412840-54412859 | Msa0029180:intron | 20.0% |
| !! | TTTGCTAAATTATTTGATGT+TGG | - | chr1_1:54412921-54412940 | Msa0029180:intron | 20.0% |
| !! | TTGCTAAATTATTTGATGTT+GGG | - | chr1_1:54412922-54412941 | Msa0029180:intron | 20.0% |
| !! | AGAAGGAAAGAAAAAAAAAA+CGG | + | chr1_1:54413468-54413487 | Msa0029190:intron | 20.0% |
| !! | AAATAATACAATCAATCAGA+GGG | + | chr1_1:54413547-54413566 | Msa0029190:intron | 20.0% |
| !! | AAAATAATACAATCAATCAG+AGG | + | chr1_1:54413548-54413567 | Msa0029190:intron | 20.0% |
| !!! | ATTTTGATATAGCAAACATT+GGG | + | chr1_1:54414441-54414460 | None:intergenic | 20.0% |
| !!! | AATCAATAAAGTTCTGATAA+AGG | + | chr1_1:54414760-54414779 | None:intergenic | 20.0% |
| !! | AAAGATCAAAGAGAAAAAAA+TGG | + | chr1_1:54415327-54415346 | None:intergenic | 20.0% |
| ! | TATTGAAAAAAAGTGAATGG+TGG | + | chr1_1:54412351-54412370 | None:intergenic | 25.0% |
| !!! | ATTCGTTGGTTTTAGTTTTA+GGG | - | chr1_1:54412409-54412428 | Msa0029180:three_prime_UTR | 25.0% |
| !!! | AATACTATGGTTTTGGAAAT+GGG | + | chr1_1:54412675-54412694 | None:intergenic | 25.0% |
| !!! | AAATACTATGGTTTTGGAAA+TGG | + | chr1_1:54412676-54412695 | None:intergenic | 25.0% |
| !!! | AAATTTCAGTTTTTGGCAAT+TGG | - | chr1_1:54412869-54412888 | Msa0029180:intron | 25.0% |
| !!! | AATTTCAGTTTTTGGCAATT+GGG | - | chr1_1:54412870-54412889 | Msa0029180:intron | 25.0% |
| ! | TTGTCAATTTATGTGATGTT+TGG | - | chr1_1:54413091-54413110 | Msa0029180:intron | 25.0% |
| !!! | TGTTTGGTGGAAAATATTTT+AGG | - | chr1_1:54413107-54413126 | Msa0029180:intron | 25.0% |
| !!! | GTTTGGTGGAAAATATTTTA+GGG | - | chr1_1:54413108-54413127 | Msa0029180:intron | 25.0% |
| ! | TAACAAATCATCTCCATTAA+TGG | + | chr1_1:54413226-54413245 | None:intergenic | 25.0% |
| !!! | TTAATGGAGATGATTTGTTA+TGG | - | chr1_1:54413226-54413245 | Msa0029180:intron | 25.0% |
| !!! | TAATGGAGATGATTTGTTAT+GGG | - | chr1_1:54413227-54413246 | Msa0029180:intron | 25.0% |
| ! | AAACCAAGCATTAACTTAAA+TGG | + | chr1_1:54413344-54413363 | Msa0029190:CDS | 25.0% |
| !!! | TTTAAGTTAATGCTTGGTTT+TGG | - | chr1_1:54413344-54413363 | Msa0029180:intron | 25.0% |
| ! | AATAATACAATCAATCAGAG+GGG | + | chr1_1:54413546-54413565 | Msa0029190:intron | 25.0% |
| !!! | TTGGATTTGTGTTTTTATTC+TGG | - | chr1_1:54413735-54413754 | Msa0029180:intron | 25.0% |
| ! | TATGTACTTTCTCTTGAAAT+TGG | - | chr1_1:54413797-54413816 | Msa0029180:intron | 25.0% |
| !! | TTTAGTTCCAGATTTCAATT+TGG | + | chr1_1:54414161-54414180 | None:intergenic | 25.0% |
| ! | TCAAACTGAATGTTAACATT+TGG | + | chr1_1:54414229-54414248 | None:intergenic | 25.0% |
| !!! | GATTTTGATATAGCAAACAT+TGG | + | chr1_1:54414442-54414461 | None:intergenic | 25.0% |
| !!! | ATGTTTGCTATATCAAAATC+TGG | - | chr1_1:54414442-54414461 | Msa0029180:intron | 25.0% |
| ! | TATATCAAAATCTGGTATTC+AGG | - | chr1_1:54414450-54414469 | Msa0029180:intron | 25.0% |
| ! | ATTGAATTTCAACATAGACA+AGG | + | chr1_1:54414535-54414554 | None:intergenic | 25.0% |
| ! | TCTTCATAATAACTCAATCT+GGG | + | chr1_1:54414559-54414578 | None:intergenic | 25.0% |
| ! | AAGAGCAATCACAATATATA+TGG | + | chr1_1:54414624-54414643 | None:intergenic | 25.0% |
| ! | ATATATATTGTGATTGCTCT+TGG | - | chr1_1:54414623-54414642 | Msa0029180:intron | 25.0% |
| ! | CAAACAAACAAAATTCAGTA+TGG | + | chr1_1:54415067-54415086 | None:intergenic | 25.0% |
| ! | AAGAATTAAGAGTAGTGATT+TGG | - | chr1_1:54415776-54415795 | Msa0029180:intron | 25.0% |
| !! | TATTCATGATTTTGCATTGA+AGG | + | chr1_1:54415944-54415963 | None:intergenic | 25.0% |
| !!! | GGTTTGGTGATTTTAAATTT+AGG | - | chr1_1:54416072-54416091 | Msa0029180:CDS | 25.0% |
| !! | AAAATTTTGTTACGGTATTC+AGG | - | chr1_1:54416129-54416148 | Msa0029180:CDS | 25.0% |
| TTTGCTTACAAGGCAAATAT+AGG | + | chr1_1:54412192-54412211 | None:intergenic | 30.0% | |
| ! | AGTGAATGGTGGAAATTAAA+TGG | + | chr1_1:54412340-54412359 | None:intergenic | 30.0% |
| !! | TTTTCTTTGATCTGATTCGT+TGG | - | chr1_1:54412395-54412414 | Msa0029180:three_prime_UTR | 30.0% |
| !!! | GATTCGTTGGTTTTAGTTTT+AGG | - | chr1_1:54412408-54412427 | Msa0029180:three_prime_UTR | 30.0% |
| ATTCTGCTAATGTTAGCTAT+AGG | + | chr1_1:54412547-54412566 | None:intergenic | 30.0% | |
| CATTAGCAGAATCATGAAAA+AGG | - | chr1_1:54412555-54412574 | Msa0029180:three_prime_UTR | 30.0% | |
| AAAAAGGCTTTACCTTCAAA+TGG | - | chr1_1:54412571-54412590 | Msa0029180:three_prime_UTR | 30.0% | |
| AAAAGGCTTTACCTTCAAAT+GGG | - | chr1_1:54412572-54412591 | Msa0029180:three_prime_UTR | 30.0% | |
| !! | TTTTTGGCAATTGGGTATAT+TGG | - | chr1_1:54412878-54412897 | Msa0029180:intron | 30.0% |
| CTAAATTATTTGATGTTGGG+TGG | - | chr1_1:54412925-54412944 | Msa0029180:intron | 30.0% | |
| TGTTGGGTGGAAAATAATTT+AGG | - | chr1_1:54412938-54412957 | Msa0029180:intron | 30.0% | |
| GTTGGGTGGAAAATAATTTA+GGG | - | chr1_1:54412939-54412958 | Msa0029180:intron | 30.0% | |
| TAGATGGGTGATATAAATTG+TGG | - | chr1_1:54413022-54413041 | Msa0029180:intron | 30.0% | |
| GTGATATAAATTGTGGTTGT+TGG | - | chr1_1:54413029-54413048 | Msa0029180:intron | 30.0% | |
| TCAATTTATGTGATGTTTGG+TGG | - | chr1_1:54413094-54413113 | Msa0029180:intron | 30.0% | |
| !! | TGTTTGTTTGTTGTCTGAAT+TGG | - | chr1_1:54413139-54413158 | Msa0029180:intron | 30.0% |
| ! | TTTGTTGTCTGAATTGGAAA+TGG | - | chr1_1:54413145-54413164 | Msa0029180:intron | 30.0% |
| ! | TGAATTGGAAATGGATGTTT+TGG | - | chr1_1:54413154-54413173 | Msa0029180:intron | 30.0% |
| ! | GAATTGGAAATGGATGTTTT+GGG | - | chr1_1:54413155-54413174 | Msa0029180:intron | 30.0% |
| AGACTATATAGAACCACTTA+AGG | - | chr1_1:54413272-54413291 | Msa0029180:intron | 30.0% | |
| ! | TTGCCATTTAAGTTAATGCT+TGG | - | chr1_1:54413338-54413357 | Msa0029180:intron | 30.0% |
| !!! | TTTTTTCTTTCCTTCTTCCT+TGG | - | chr1_1:54413472-54413491 | Msa0029180:intron | 30.0% |
| AGTAAAGGATCTGTTAGAAA+CGG | - | chr1_1:54413638-54413657 | Msa0029180:intron | 30.0% | |
| !! | TTTTTATTCTGGTGACTTGT+TGG | - | chr1_1:54413746-54413765 | Msa0029180:intron | 30.0% |
| ! | ATATTGCAGTTTGTTCATCA+GGG | - | chr1_1:54413827-54413846 | Msa0029180:intron | 30.0% |
| AACAAGTTCATGCTCATTTA+TGG | - | chr1_1:54413928-54413947 | Msa0029180:intron | 30.0% | |
| CAATACATGTTGCCAATTTA+AGG | - | chr1_1:54414006-54414025 | Msa0029180:intron | 30.0% | |
| TTTCGACTGAATCAATGAAT+TGG | + | chr1_1:54414047-54414066 | None:intergenic | 30.0% | |
| TTGATTCAGTCGAAATAGAT+TGG | - | chr1_1:54414052-54414071 | Msa0029180:intron | 30.0% | |
| TGATTCAGTCGAAATAGATT+GGG | - | chr1_1:54414053-54414072 | Msa0029180:intron | 30.0% | |
| TATGTAAGCAGATAATTACG+TGG | + | chr1_1:54414130-54414149 | None:intergenic | 30.0% | |
| CAGATTTCAATTTGGATGAT+TGG | + | chr1_1:54414153-54414172 | None:intergenic | 30.0% | |
| CAATCATCCAAATTGAAATC+TGG | - | chr1_1:54414151-54414170 | Msa0029180:intron | 30.0% | |
| AAAACAGAATGGATCAATAG+GGG | + | chr1_1:54414489-54414508 | None:intergenic | 30.0% | |
| CAAAACAGAATGGATCAATA+GGG | + | chr1_1:54414490-54414509 | None:intergenic | 30.0% | |
| TCAAAACAGAATGGATCAAT+AGG | + | chr1_1:54414491-54414510 | None:intergenic | 30.0% | |
| !! | ATCCATTCTGTTTTGAGTAT+CGG | - | chr1_1:54414495-54414514 | Msa0029180:intron | 30.0% |
| GTCTTCATAATAACTCAATC+TGG | + | chr1_1:54414560-54414579 | None:intergenic | 30.0% | |
| CAATCACAATATATATGGTG+GGG | + | chr1_1:54414619-54414638 | None:intergenic | 30.0% | |
| GCAATCACAATATATATGGT+GGG | + | chr1_1:54414620-54414639 | None:intergenic | 30.0% | |
| AGCAATCACAATATATATGG+TGG | + | chr1_1:54414621-54414640 | None:intergenic | 30.0% | |
| GAAAACAGAGAGATAGAAAT+CGG | + | chr1_1:54414696-54414715 | None:intergenic | 30.0% | |
| !!! | CAACTGACAATTGTTTTTTG+CGG | - | chr1_1:54414862-54414881 | Msa0029180:intron | 30.0% |
| TGGTTGTGTTAATAACCTTT+AGG | - | chr1_1:54414895-54414914 | Msa0029180:CDS | 30.0% | |
| TTAATAACCTTTAGGTCTGA+AGG | - | chr1_1:54414903-54414922 | Msa0029180:CDS | 30.0% | |
| ! | CCAATATGGTACTATCTTTT+GGG | + | chr1_1:54414998-54415017 | None:intergenic | 30.0% |
| ! | TCCAATATGGTACTATCTTT+TGG | + | chr1_1:54414999-54415018 | None:intergenic | 30.0% |
| ATTCGAAAGTTACAAACCAA+AGG | + | chr1_1:54415130-54415149 | None:intergenic | 30.0% | |
| TAATAGTAGCATCAGATTTG+TGG | + | chr1_1:54415395-54415414 | None:intergenic | 30.0% | |
| TCAAACAAAAGCTCAAATGT+GGG | + | chr1_1:54415611-54415630 | None:intergenic | 30.0% | |
| ATCAAACAAAAGCTCAAATG+TGG | + | chr1_1:54415612-54415631 | None:intergenic | 30.0% | |
| !! | CAAGTTCTGACTTTGTATTT+TGG | + | chr1_1:54415640-54415659 | None:intergenic | 30.0% |
| !! | CTGATTTTGACATGACAATT+CGG | - | chr1_1:54415666-54415685 | Msa0029180:intron | 30.0% |
| CCTAAGAAATATGTTCATAG+TGG | + | chr1_1:54415861-54415880 | None:intergenic | 30.0% | |
| CCACTATGAACATATTTCTT+AGG | - | chr1_1:54415858-54415877 | Msa0029180:intron | 30.0% | |
| !! | TTGTCTTTTTGGTAGGAAAA+TGG | + | chr1_1:54416018-54416037 | None:intergenic | 30.0% |
| ! | TTGTTTCAGTTCATCTTTTG+AGG | + | chr1_1:54416051-54416070 | None:intergenic | 30.0% |
| CAAAAGATGAACTGAAACAA+TGG | - | chr1_1:54416051-54416070 | Msa0029180:CDS | 30.0% | |
| ! | TGGGTGTCAAAATTTTGTTA+CGG | - | chr1_1:54416121-54416140 | Msa0029180:CDS | 30.0% |
| CATATTATCTTCCCTTTAGT+GGG | + | chr1_1:54416192-54416211 | None:intergenic | 30.0% | |
| ACATATTATCTTCCCTTTAG+TGG | + | chr1_1:54416193-54416212 | None:intergenic | 30.0% | |
| CTAAATAGAGTTCTCAAAAC+AGG | + | chr1_1:54416264-54416283 | None:intergenic | 30.0% | |
| !! | ATTGTTGTTTCTCTCTTTGA+TGG | - | chr1_1:54416344-54416363 | Msa0029180:five_prime_UTR | 30.0% |
| TGATTGGATGTTTGCTTACA+AGG | + | chr1_1:54412202-54412221 | None:intergenic | 35.0% | |
| CTCGAGAAGAAACAATTGAT+TGG | + | chr1_1:54412218-54412237 | None:intergenic | 35.0% | |
| ! | CGTACCTAGAAAAGTGTATT+TGG | + | chr1_1:54412243-54412262 | None:intergenic | 35.0% |
| TGCACATGGATGAAATTGAA+TGG | + | chr1_1:54412288-54412307 | None:intergenic | 35.0% | |
| TGGTGGAAATTAAATGGTGA+TGG | + | chr1_1:54412334-54412353 | None:intergenic | 35.0% | |
| ! | TTCGCAATTTTCCCATTTGA+AGG | + | chr1_1:54412586-54412605 | None:intergenic | 35.0% |
| AAATTGTGGTTGTTGGCAAA+TGG | - | chr1_1:54413036-54413055 | Msa0029180:intron | 35.0% | |
| AATTGTGGTTGTTGGCAAAT+GGG | - | chr1_1:54413037-54413056 | Msa0029180:intron | 35.0% | |
| GAGAAGAGAAAGACCATTAA+TGG | - | chr1_1:54413210-54413229 | Msa0029180:intron | 35.0% | |
| !! | AGATGATTTGTTATGGGCTA+TGG | - | chr1_1:54413233-54413252 | Msa0029180:intron | 35.0% |
| TTCTGATAGGGTGATAGTAA+AGG | - | chr1_1:54413623-54413642 | Msa0029180:intron | 35.0% | |
| !!! | GTGTGATTGCACAACTTTTT+TGG | - | chr1_1:54413716-54413735 | Msa0029180:intron | 35.0% |
| ! | CATATTGCAGTTTGTTCATC+AGG | - | chr1_1:54413826-54413845 | Msa0029180:intron | 35.0% |
| !! | TTTGAGCTATATTGATTCCC+AGG | - | chr1_1:54413853-54413872 | Msa0029180:intron | 35.0% |
| ! | ATGTTGCCAATTTAAGGCTA+TGG | - | chr1_1:54414012-54414031 | Msa0029180:intron | 35.0% |
| ! | AGCTAACCATAGCCTTAAAT+TGG | + | chr1_1:54414021-54414040 | None:intergenic | 35.0% |
| GATTCAGTCGAAATAGATTG+GGG | - | chr1_1:54414054-54414073 | Msa0029180:intron | 35.0% | |
| GATAATTACGTGGATAATCC+TGG | + | chr1_1:54414120-54414139 | None:intergenic | 35.0% | |
| AAAAATGAGCAAGCAAGGTA+AGG | + | chr1_1:54414204-54414223 | None:intergenic | 35.0% | |
| TGGAAAAAAATGAGCAAGCA+AGG | + | chr1_1:54414209-54414228 | None:intergenic | 35.0% | |
| ! | TTTGAGATCGTGTATTTCCT+GGG | - | chr1_1:54414244-54414263 | Msa0029180:intron | 35.0% |
| CAGGACAGTGTAACTTATAT+GGG | + | chr1_1:54414280-54414299 | None:intergenic | 35.0% | |
| ACAGGACAGTGTAACTTATA+TGG | + | chr1_1:54414281-54414300 | None:intergenic | 35.0% | |
| TTATCTCAGTCTAACTATCC+AGG | - | chr1_1:54414317-54414336 | Msa0029180:intron | 35.0% | |
| TATCTCAGTCTAACTATCCA+GGG | - | chr1_1:54414318-54414337 | Msa0029180:intron | 35.0% | |
| TCACGAAAAAAAAAGTTCCC+TGG | + | chr1_1:54414338-54414357 | None:intergenic | 35.0% | |
| !!! | TGACCTCAAGATCTCTTTTT+TGG | - | chr1_1:54414355-54414374 | Msa0029180:intron | 35.0% |
| ! | AGTTTGGAGTATGAGATAAG+TGG | + | chr1_1:54414381-54414400 | None:intergenic | 35.0% |
| AATCTGGTATTCAGGTCTAA+TGG | - | chr1_1:54414458-54414477 | Msa0029180:intron | 35.0% | |
| ATCTGGTATTCAGGTCTAAT+GGG | - | chr1_1:54414459-54414478 | Msa0029180:intron | 35.0% | |
| GAGAAAGAGTGAGAAGATTA+GGG | + | chr1_1:54414718-54414737 | None:intergenic | 35.0% | |
| AGAGAAAGAGTGAGAAGATT+AGG | + | chr1_1:54414719-54414738 | None:intergenic | 35.0% | |
| AGACAATAGCTAGCTAAAGT+TGG | + | chr1_1:54414800-54414819 | None:intergenic | 35.0% | |
| TGTTATGCAGCTGTTAGATT+CGG | + | chr1_1:54414835-54414854 | None:intergenic | 35.0% | |
| !!! | TTTTTTGCGGCATCTTCTAT+TGG | - | chr1_1:54414875-54414894 | Msa0029180:intron | 35.0% |
| GTACTGTTATGCATTCTACT+GGG | + | chr1_1:54414952-54414971 | None:intergenic | 35.0% | |
| AGTACTGTTATGCATTCTAC+TGG | + | chr1_1:54414953-54414972 | None:intergenic | 35.0% | |
| CCCAAAAGATAGTACCATAT+TGG | - | chr1_1:54414995-54415014 | Msa0029180:intron | 35.0% | |
| TCTCTAAACATATCAGTCCT+GGG | + | chr1_1:54415027-54415046 | None:intergenic | 35.0% | |
| ATCTCTAAACATATCAGTCC+TGG | + | chr1_1:54415028-54415047 | None:intergenic | 35.0% | |
| AGGACTGATATGTTTAGAGA+TGG | - | chr1_1:54415027-54415046 | Msa0029180:intron | 35.0% | |
| GGACTGATATGTTTAGAGAT+GGG | - | chr1_1:54415028-54415047 | Msa0029180:intron | 35.0% | |
| ATACCATGACATATGACCTT+TGG | - | chr1_1:54415111-54415130 | Msa0029180:intron | 35.0% | |
| AAACCAAAGGTCATATGTCA+TGG | + | chr1_1:54415117-54415136 | None:intergenic | 35.0% | |
| ACTTTCGAATGTACTTCCAT+TGG | - | chr1_1:54415140-54415159 | Msa0029180:intron | 35.0% | |
| CTTTCGAATGTACTTCCATT+GGG | - | chr1_1:54415141-54415160 | Msa0029180:intron | 35.0% | |
| !! | CTTCCATTGGGTTGATAATA+AGG | - | chr1_1:54415153-54415172 | Msa0029180:intron | 35.0% |
| ACTCCTTATTATCAACCCAA+TGG | + | chr1_1:54415159-54415178 | None:intergenic | 35.0% | |
| !! | GTTGATAATAAGGAGTCACT+GGG | - | chr1_1:54415163-54415182 | Msa0029180:intron | 35.0% |
| !!! | GGTAAGCTAGATTGTTTTTG+TGG | + | chr1_1:54415198-54415217 | None:intergenic | 35.0% |
| CAGAAATAATGACAGGATCA+TGG | + | chr1_1:54415276-54415295 | None:intergenic | 35.0% | |
| !!! | TCTGTAATTTTGCTGTTCAG+TGG | - | chr1_1:54415417-54415436 | Msa0029180:intron | 35.0% |
| GCTGTTCAGTGGTATTATAT+AGG | - | chr1_1:54415428-54415447 | Msa0029180:intron | 35.0% | |
| TATTCGATTGAGTAACACTC+CGG | - | chr1_1:54415502-54415521 | Msa0029180:intron | 35.0% | |
| TAGAGAACAACCAAACACAT+CGG | + | chr1_1:54415528-54415547 | None:intergenic | 35.0% | |
| GGTTGAGACTGAAAATAATC+TGG | - | chr1_1:54415563-54415582 | Msa0029180:intron | 35.0% | |
| CTGAAAATAATCTGGATGTC+TGG | - | chr1_1:54415571-54415590 | Msa0029180:intron | 35.0% | |
| ! | CTGACGATATAACATGGTTT+TGG | + | chr1_1:54415717-54415736 | None:intergenic | 35.0% |
| AGTACTCTGACGATATAACA+TGG | + | chr1_1:54415723-54415742 | None:intergenic | 35.0% | |
| !! | TTAATCTGTTGCTGATTTGC+AGG | - | chr1_1:54415895-54415914 | Msa0029180:intron | 35.0% |
| !! | TCTTTTTGGTAGGAAAATGG+TGG | + | chr1_1:54416015-54416034 | None:intergenic | 35.0% |
| !! | AGCTTCTTTGTCTTTTTGGT+AGG | + | chr1_1:54416025-54416044 | None:intergenic | 35.0% |
| ! | GAGAAGCTTCTTTGTCTTTT+TGG | + | chr1_1:54416029-54416048 | None:intergenic | 35.0% |
| GATGAACTGAAACAATGGTT+TGG | - | chr1_1:54416056-54416075 | Msa0029180:CDS | 35.0% | |
| TGTGTAGAAACTAGAAAGCA+TGG | - | chr1_1:54416101-54416120 | Msa0029180:CDS | 35.0% | |
| ! | GTGTAGAAACTAGAAAGCAT+GGG | - | chr1_1:54416102-54416121 | Msa0029180:CDS | 35.0% |
| TGTCAAAGCACAAATGTTCT+TGG | - | chr1_1:54416385-54416404 | Msa0029180:five_prime_UTR | 35.0% | |
| AAAGCACAAATGTTCTTGGA+AGG | - | chr1_1:54416389-54416408 | Msa0029180:five_prime_UTR | 35.0% | |
| ACAAATGTTCTTGGAAGGAT+TGG | - | chr1_1:54416394-54416413 | Msa0029180:five_prime_UTR | 35.0% | |
| ! | AGCGCCAAATACACTTTTCT+AGG | - | chr1_1:54412236-54412255 | Msa0029180:three_prime_UTR | 40.0% |
| ! | GGTAAGATCTGAAATGCACA+TGG | + | chr1_1:54412302-54412321 | None:intergenic | 40.0% |
| !! | AAATGGTGATGGTGACAGAA+CGG | + | chr1_1:54412323-54412342 | None:intergenic | 40.0% |
| ATTGTGGTTGTTGGCAAATG+GGG | - | chr1_1:54413038-54413057 | Msa0029180:intron | 40.0% | |
| TGTTGGCAAATGGGGTAAAT+TGG | - | chr1_1:54413046-54413065 | Msa0029180:intron | 40.0% | |
| !! | TGGAAATGGATGTTTTGGGT+TGG | - | chr1_1:54413159-54413178 | Msa0029180:intron | 40.0% |
| !!! | GATGTTTTGGGTTGGTTGTA+GGG | - | chr1_1:54413167-54413186 | Msa0029180:intron | 40.0% |
| TGGTCTTTCTCTTCTCTTTC+TGG | + | chr1_1:54413206-54413225 | None:intergenic | 40.0% | |
| ! | TTATGGGCTATGGCTACTTT+AGG | - | chr1_1:54413243-54413262 | Msa0029180:intron | 40.0% |
| !! | TCCTTCTTCCTTGGTGATTT+TGG | - | chr1_1:54413481-54413500 | Msa0029180:intron | 40.0% |
| TCCAAAATCACCAAGGAAGA+AGG | + | chr1_1:54413485-54413504 | Msa0029190:intron | 40.0% | |
| TCGACATTCCAAAATCACCA+AGG | + | chr1_1:54413492-54413511 | Msa0029190:intron | 40.0% | |
| !!! | TGGTGATTTTGGAATGTCGA+CGG | - | chr1_1:54413492-54413511 | Msa0029180:intron | 40.0% |
| AATACAATCAATCAGAGGGG+AGG | + | chr1_1:54413543-54413562 | Msa0029190:intron | 40.0% | |
| ACCTTAGACTATCTTGCCAA+CGG | - | chr1_1:54413575-54413594 | Msa0029180:intron | 40.0% | |
| TATCACCCTATCAGAAACCA+TGG | + | chr1_1:54413619-54413638 | Msa0029190:CDS | 40.0% | |
| !! | GTGACTTGTTGGTCAAAACA+AGG | - | chr1_1:54413757-54413776 | Msa0029180:intron | 40.0% |
| AGACAGAGAGATTGTTACCT+GGG | + | chr1_1:54413873-54413892 | None:intergenic | 40.0% | |
| TCACCGAACTCTTATCTGAT+TGG | - | chr1_1:54414094-54414113 | Msa0029180:intron | 40.0% | |
| TGGCCAATCAGATAAGAGTT+CGG | + | chr1_1:54414100-54414119 | None:intergenic | 40.0% | |
| ! | GTTTGAGATCGTGTATTTCC+TGG | - | chr1_1:54414243-54414262 | Msa0029180:intron | 40.0% |
| TGGCCAAAAAAGAGATCTTG+AGG | + | chr1_1:54414361-54414380 | None:intergenic | 40.0% | |
| TGAATGTTGTGGAGCAGAAT+GGG | + | chr1_1:54414418-54414437 | None:intergenic | 40.0% | |
| CAAACATTGGGTGAATGTTG+TGG | + | chr1_1:54414429-54414448 | None:intergenic | 40.0% | |
| TGCCGATACTCAAAACAGAA+TGG | + | chr1_1:54414500-54414519 | None:intergenic | 40.0% | |
| AACATGCCAAGAGTTACTCT+TGG | - | chr1_1:54414582-54414601 | Msa0029180:intron | 40.0% | |
| GTACTATCCTTCAGACCTAA+AGG | + | chr1_1:54414913-54414932 | None:intergenic | 40.0% | |
| !! | TATCTTTTGGGTCTGGTCTA+GGG | + | chr1_1:54414986-54415005 | None:intergenic | 40.0% |
| !! | ATGGTACTATCTTTTGGGTC+TGG | + | chr1_1:54414993-54415012 | None:intergenic | 40.0% |
| TACCATATTGGAATTCACCC+AGG | - | chr1_1:54415007-54415026 | Msa0029180:intron | 40.0% | |
| !! | GGTTGATAATAAGGAGTCAC+TGG | - | chr1_1:54415162-54415181 | Msa0029180:intron | 40.0% |
| !! | ATCCTGTCATTATTTCTGCC+TGG | - | chr1_1:54415278-54415297 | Msa0029180:intron | 40.0% |
| !! | ATGAAAATCAGAAGAGCACC+AGG | + | chr1_1:54415299-54415318 | None:intergenic | 40.0% |
| ACTAAGTGTGACAAACAAGG+TGG | + | chr1_1:54415371-54415390 | None:intergenic | 40.0% | |
| GGTACTAAGTGTGACAAACA+AGG | + | chr1_1:54415374-54415393 | None:intergenic | 40.0% | |
| ATACAAGTAGAGCAGGACAA+AGG | + | chr1_1:54415463-54415482 | None:intergenic | 40.0% | |
| GTTCATGATACAAGTAGAGC+AGG | + | chr1_1:54415470-54415489 | None:intergenic | 40.0% | |
| GTGTTTGGTTGTTCTCTATC+TGG | - | chr1_1:54415530-54415549 | Msa0029180:intron | 40.0% | |
| TCTCTATCTGGCTAACTCTA+CGG | - | chr1_1:54415542-54415561 | Msa0029180:intron | 40.0% | |
| TGCAACACAATGAAAATGGC+AGG | + | chr1_1:54415986-54416005 | None:intergenic | 40.0% | |
| GAGGTGCAACACAATGAAAA+TGG | + | chr1_1:54415990-54416009 | None:intergenic | 40.0% | |
| TCTCATCATGACAAGTTGCA+TGG | + | chr1_1:54416237-54416256 | None:intergenic | 40.0% | |
| !!! | GTTTTAGGGTTTATGCGCCA+TGG | - | chr1_1:54412423-54412442 | Msa0029180:three_prime_UTR | 45.0% |
| !! | TGGCTTTCTTCGCATTGGTT+CGG | + | chr1_1:54412457-54412476 | None:intergenic | 45.0% |
| !!! | GGATGTTTTGGGTTGGTTGT+AGG | - | chr1_1:54413166-54413185 | Msa0029180:intron | 45.0% |
| CTTGCTAGGTACACCTTAAG+TGG | + | chr1_1:54413288-54413307 | Msa0029190:CDS | 45.0% | |
| CACTTAAGGTGTACCTAGCA+AGG | - | chr1_1:54413286-54413305 | Msa0029180:intron | 45.0% | |
| TTACCTCTCTGAACCTTGCT+AGG | + | chr1_1:54413302-54413321 | Msa0029190:CDS | 45.0% | |
| TCGACGGATATCACAGTTAG+AGG | - | chr1_1:54413508-54413527 | Msa0029180:intron | 45.0% | |
| TCCGTTGGCAAGATAGTCTA+AGG | + | chr1_1:54413579-54413598 | Msa0029190:CDS | 45.0% | |
| CACAGATGTTAGCATTCCGT+TGG | + | chr1_1:54413594-54413613 | Msa0029190:CDS | 45.0% | |
| ATGCTAACATCTGTGAGCCA+TGG | - | chr1_1:54413599-54413618 | Msa0029180:intron | 45.0% | |
| TGTGAGCCATGGTTTCTGAT+AGG | - | chr1_1:54413610-54413629 | Msa0029180:intron | 45.0% | |
| GTGAGCCATGGTTTCTGATA+GGG | - | chr1_1:54413611-54413630 | Msa0029180:intron | 45.0% | |
| GGATCTGTTAGAAACGGTGA+TGG | - | chr1_1:54413644-54413663 | Msa0029180:intron | 45.0% | |
| !! | GTTAGAAACGGTGATGGATC+TGG | - | chr1_1:54413650-54413669 | Msa0029180:intron | 45.0% |
| GAGACAGAGAGATTGTTACC+TGG | + | chr1_1:54413874-54413893 | None:intergenic | 45.0% | |
| AGTCGAAATAGATTGGGGAC+AGG | - | chr1_1:54414059-54414078 | Msa0029180:intron | 45.0% | |
| ! | GAACTCTTATCTGATTGGCC+AGG | - | chr1_1:54414099-54414118 | Msa0029180:intron | 45.0% |
| ATATGGGAAGATGAGTACCC+AGG | + | chr1_1:54414264-54414283 | None:intergenic | 45.0% | |
| GAGATAAAAACCCTGCATGC+AGG | + | chr1_1:54414304-54414323 | None:intergenic | 45.0% | |
| GAATGTTGTGGAGCAGAATG+GGG | + | chr1_1:54414417-54414436 | None:intergenic | 45.0% | |
| GTGAATGTTGTGGAGCAGAA+TGG | + | chr1_1:54414419-54414438 | None:intergenic | 45.0% | |
| CCAACTCCAAGAGTAACTCT+TGG | + | chr1_1:54414591-54414610 | None:intergenic | 45.0% | |
| CCAAGAGTTACTCTTGGAGT+TGG | - | chr1_1:54414588-54414607 | Msa0029180:intron | 45.0% | |
| AGAGTTACTCTTGGAGTTGG+TGG | - | chr1_1:54414591-54414610 | Msa0029180:intron | 45.0% | |
| !! | ATCTTTTGGGTCTGGTCTAG+GGG | + | chr1_1:54414985-54415004 | None:intergenic | 45.0% |
| !! | CTATCTTTTGGGTCTGGTCT+AGG | + | chr1_1:54414987-54415006 | None:intergenic | 45.0% |
| GTCCTGGGTGAATTCCAATA+TGG | + | chr1_1:54415012-54415031 | None:intergenic | 45.0% | |
| GCATTTGCTCTCAAGCAACT+TGG | + | chr1_1:54415219-54415238 | None:intergenic | 45.0% | |
| GCTGAGTGGAGTTTAGTGAT+AGG | - | chr1_1:54415237-54415256 | Msa0029180:intron | 45.0% | |
| CACCAGGCAGAAATAATGAC+AGG | + | chr1_1:54415283-54415302 | None:intergenic | 45.0% | |
| ! | GAAGGCATAACCAGATGTTG+TGG | + | chr1_1:54415926-54415945 | None:intergenic | 45.0% |
| CACAATGAAAATGGCAGGTG+AGG | + | chr1_1:54415981-54416000 | None:intergenic | 45.0% | |
| ! | TGGTAGGAAAATGGTGGAAG+AGG | + | chr1_1:54416009-54416028 | None:intergenic | 45.0% |
| ! | TATCTTCCCTTTAGTGGGCA+AGG | + | chr1_1:54416187-54416206 | None:intergenic | 45.0% |
| !! | TAAAAAAAATAAAAATACTA+TGG | + | chr1_1:54412688-54412707 | None:intergenic | 5.0% |
| TCTCGTGGCTTTCTTCGCAT+TGG | + | chr1_1:54412462-54412481 | None:intergenic | 50.0% | |
| GTACCTAGCAAGGTTCAGAG+AGG | - | chr1_1:54413296-54413315 | Msa0029180:intron | 50.0% | |
| TCTGGTAGACGAGACCAAGT+TGG | - | chr1_1:54413668-54413687 | Msa0029180:intron | 50.0% | |
| TCCTCCAGGTCAAAATGCTC+AGG | - | chr1_1:54413694-54413713 | Msa0029180:intron | 50.0% | |
| !! | ACCTGAGCATTTTGACCTGG+AGG | + | chr1_1:54413698-54413717 | Msa0029190:CDS | 50.0% |
| !! | CACACCTGAGCATTTTGACC+TGG | + | chr1_1:54413701-54413720 | Msa0029190:CDS | 50.0% |
| AAAAACCCTGCATGCAGGAC+AGG | + | chr1_1:54414299-54414318 | None:intergenic | 50.0% | |
| TGCATTCTACTGGGTGCTCT+GGG | + | chr1_1:54414943-54414962 | None:intergenic | 50.0% | |
| ATGCATTCTACTGGGTGCTC+TGG | + | chr1_1:54414944-54414963 | None:intergenic | 50.0% | |
| ! | GTTTGAAGCCACCAATCACG+AGG | - | chr1_1:54415082-54415101 | Msa0029180:intron | 50.0% |
| ATCTCTAGCCTCGTGATTGG+TGG | + | chr1_1:54415093-54415112 | None:intergenic | 50.0% | |
| GGTATCTCTAGCCTCGTGAT+TGG | + | chr1_1:54415096-54415115 | None:intergenic | 50.0% | |
| GCTTGAGAGCAAATGCTGAG+TGG | - | chr1_1:54415223-54415242 | Msa0029180:intron | 50.0% | |
| GAACAACCAAACACATCGGC+CGG | + | chr1_1:54415524-54415543 | None:intergenic | 50.0% | |
| TTAGCTGCCTTGCCCACTAA+AGG | - | chr1_1:54416177-54416196 | Msa0029180:intron | 50.0% | |
| TAGCTGCCTTGCCCACTAAA+GGG | - | chr1_1:54416178-54416197 | Msa0029180:intron | 50.0% | |
| !! | TTGGTTCGGTGCATCTGCCA+TGG | + | chr1_1:54412443-54412462 | None:intergenic | 55.0% |
| TGCGAAGAAAGCCACGAGAG+TGG | - | chr1_1:54412463-54412482 | Msa0029180:three_prime_UTR | 55.0% | |
| GAAGAAAGCCACGAGAGTGG+TGG | - | chr1_1:54412466-54412485 | Msa0029180:three_prime_UTR | 55.0% | |
| TCTGTTCACCACCACTCTCG+TGG | + | chr1_1:54412477-54412496 | None:intergenic | 55.0% | |
| GAAGCAGAAGAAGAGCCACG+TGG | + | chr1_1:54412502-54412521 | None:intergenic | 55.0% | |
| ! | GGTAGACGAGACCAAGTTGG+CGG | - | chr1_1:54413671-54413690 | Msa0029180:intron | 55.0% |
| ACTGTCCTGTCCTGCATGCA+GGG | - | chr1_1:54414291-54414310 | Msa0029180:intron | 55.0% | |
| TTGTGGAGCAGAATGGGGAC+TGG | + | chr1_1:54414412-54414431 | None:intergenic | 55.0% | |
| ! | ACTGGGTGCTCTGGGCAATA+TGG | + | chr1_1:54414935-54414954 | None:intergenic | 55.0% |
| AACACTCCGGCCGATGTGTT+TGG | - | chr1_1:54415515-54415534 | Msa0029180:intron | 55.0% | |
| GCAGGTGCATCCACAACATC+TGG | - | chr1_1:54415913-54415932 | Msa0029180:intron | 55.0% | |
| GGTGGTGAACAGAGTCCACG+TGG | - | chr1_1:54412484-54412503 | Msa0029180:three_prime_UTR | 60.0% | |
| CACTGTCCTGTCCTGCATGC+AGG | - | chr1_1:54414290-54414309 | Msa0029180:intron | 60.0% | |
| ! | GGGACTGGTGGGGATGAGTT+TGG | + | chr1_1:54414397-54414416 | None:intergenic | 60.0% |
| ! | GAGCAGAATGGGGACTGGTG+GGG | + | chr1_1:54414407-54414426 | None:intergenic | 60.0% |
| ! | GGAGCAGAATGGGGACTGGT+GGG | + | chr1_1:54414408-54414427 | None:intergenic | 60.0% |
| TGGAGCAGAATGGGGACTGG+TGG | + | chr1_1:54414409-54414428 | None:intergenic | 60.0% | |
| ! | GACCAAGTTGGCGGTCCTCC+AGG | - | chr1_1:54413680-54413699 | Msa0029180:intron | 65.0% |
| GACCTGGAGGACCGCCAACT+TGG | + | chr1_1:54413685-54413704 | Msa0029190:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54412181 | 54416418 | 54412181 | ID=Msa0029180;Name=Msa0029180 |
| chr1_1 | mRNA | 54412181 | 54416418 | 54412181 | ID=Msa0029180-mRNA-1;Parent=Msa0029180;Name=Msa0029180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=95|0.8|0.83|1|0.8|0.66|6|454|174 |
| chr1_1 | exon | 54412181 | 54412682 | 54412181 | ID=Msa0029180-mRNA-1:exon:16209;Parent=Msa0029180-mRNA-1 |
| chr1_1 | exon | 54414725 | 54414763 | 54414725 | ID=Msa0029180-mRNA-1:exon:16208;Parent=Msa0029180-mRNA-1 |
| chr1_1 | exon | 54414884 | 54414967 | 54414884 | ID=Msa0029180-mRNA-1:exon:16207;Parent=Msa0029180-mRNA-1 |
| chr1_1 | exon | 54415282 | 54415411 | 54415282 | ID=Msa0029180-mRNA-1:exon:16206;Parent=Msa0029180-mRNA-1 |
| chr1_1 | exon | 54415934 | 54416175 | 54415934 | ID=Msa0029180-mRNA-1:exon:16205;Parent=Msa0029180-mRNA-1 |
| chr1_1 | exon | 54416342 | 54416418 | 54416342 | ID=Msa0029180-mRNA-1:exon:16204;Parent=Msa0029180-mRNA-1 |
| chr1_1 | five_prime_UTR | 54416342 | 54416418 | 54416342 | ID=Msa0029180-mRNA-1:five_prime_utr;Parent=Msa0029180-mRNA-1 |
| chr1_1 | five_prime_UTR | 54416158 | 54416175 | 54416158 | ID=Msa0029180-mRNA-1:five_prime_utr;Parent=Msa0029180-mRNA-1 |
| chr1_1 | CDS | 54415934 | 54416157 | 54415934 | ID=Msa0029180-mRNA-1:cds;Parent=Msa0029180-mRNA-1 |
| chr1_1 | CDS | 54415282 | 54415411 | 54415282 | ID=Msa0029180-mRNA-1:cds;Parent=Msa0029180-mRNA-1 |
| chr1_1 | CDS | 54414884 | 54414967 | 54414884 | ID=Msa0029180-mRNA-1:cds;Parent=Msa0029180-mRNA-1 |
| chr1_1 | CDS | 54414725 | 54414763 | 54414725 | ID=Msa0029180-mRNA-1:cds;Parent=Msa0029180-mRNA-1 |
| chr1_1 | CDS | 54412635 | 54412682 | 54412635 | ID=Msa0029180-mRNA-1:cds;Parent=Msa0029180-mRNA-1 |
| chr1_1 | three_prime_UTR | 54412181 | 54412634 | 54412181 | ID=Msa0029180-mRNA-1:three_prime_utr;Parent=Msa0029180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
