Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124690 | AFK49659.1 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 5.68e-126 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124690 | sp|Q8VYK4|NFYB8_ARATH | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.80e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124690 | I3TAW7 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 2.71e-126 | 361 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0124690 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027580 | Msa0124690 | 0.802104 | 6.571268e-49 | -8.615850e-47 |
| Msa0029180 | Msa0124690 | 0.894152 | 3.226561e-75 | -8.615850e-47 |
| Msa0042280 | Msa0124690 | 0.818854 | 1.577259e-52 | -8.615850e-47 |
| Msa0048180 | Msa0124690 | 0.829774 | 4.264014e-55 | -8.615850e-47 |
| Msa0052610 | Msa0124690 | 0.820312 | 7.329350e-53 | -8.615850e-47 |
| Msa0074320 | Msa0124690 | 0.806754 | 7.054053e-50 | -8.615850e-47 |
| Msa0075340 | Msa0124690 | 0.802198 | 6.285489e-49 | -8.615850e-47 |
| Msa0076040 | Msa0124690 | 0.828871 | 7.063744e-55 | -8.615850e-47 |
| Msa0077010 | Msa0124690 | 0.813810 | 2.120259e-51 | -8.615850e-47 |
| Msa0097600 | Msa0124690 | 0.834089 | 3.666279e-56 | -8.615850e-47 |
| Msa0118710 | Msa0124690 | 0.833000 | 6.854003e-56 | -8.615850e-47 |
| Msa0124690 | Msa0128860 | 0.832582 | 8.705002e-56 | -8.615850e-47 |
| Msa0124690 | Msa0167480 | 0.885343 | 8.826436e-72 | -8.615850e-47 |
| Msa0124690 | Msa0174730 | 0.829541 | 4.858811e-55 | -8.615850e-47 |
| Msa0124690 | Msa0181610 | 0.825603 | 4.282870e-54 | -8.615850e-47 |
| Msa0124690 | Msa0187930 | 0.828749 | 7.562884e-55 | -8.615850e-47 |
| Msa0124690 | Msa0194540 | 0.828716 | 7.700372e-55 | -8.615850e-47 |
| Msa0124690 | Msa0199690 | 0.831670 | 1.463290e-55 | -8.615850e-47 |
| Msa0124690 | Msa0221030 | 0.817493 | 3.205571e-52 | -8.615850e-47 |
| Msa0124690 | Msa0231100 | 0.821552 | 3.800850e-53 | -8.615850e-47 |
| Msa0124690 | Msa0244780 | 0.835707 | 1.434470e-56 | -8.615850e-47 |
| Msa0124690 | Msa0262480 | 0.835052 | 2.100430e-56 | -8.615850e-47 |
| Msa0124690 | Msa0268130 | 0.821352 | 4.226718e-53 | -8.615850e-47 |
| Msa0124690 | Msa0280430 | 0.819594 | 1.070256e-52 | -8.615850e-47 |
| Msa0124690 | Msa0298990 | 0.821753 | 3.413796e-53 | -8.615850e-47 |
| Msa0124690 | Msa0300350 | 0.841539 | 4.468368e-58 | -8.615850e-47 |
| Msa0124690 | Msa0437690 | -0.807147 | 5.826331e-50 | -8.615850e-47 |
| Msa0124690 | Msa0443390 | 0.824326 | 8.575818e-54 | -8.615850e-47 |
| Msa0124690 | Msa0508590 | 0.802902 | 4.500352e-49 | -8.615850e-47 |
| Msa0124690 | Msa0509950 | -0.806034 | 1.000502e-49 | -8.615850e-47 |
| Msa0124690 | Msa0526540 | 0.863810 | 1.907872e-64 | -8.615850e-47 |
| Msa0124690 | Msa0527150 | 0.809319 | 2.006708e-50 | -8.615850e-47 |
| Msa0124690 | Msa0561430 | 0.826630 | 2.441659e-54 | -8.615850e-47 |
| Msa0124690 | Msa0571920 | 0.820132 | 8.060242e-53 | -8.615850e-47 |
| Msa0124690 | Msa0576940 | 0.860587 | 1.862211e-63 | -8.615850e-47 |
| Msa0124690 | Msa0603320 | 0.828145 | 1.058043e-54 | -8.615850e-47 |
| Msa0124690 | Msa0621950 | 0.807438 | 5.054884e-50 | -8.615850e-47 |
| Msa0124690 | Msa0654870 | 0.803534 | 3.329095e-49 | -8.615850e-47 |
| Msa0124690 | Msa0666230 | 0.826806 | 2.216574e-54 | -8.615850e-47 |
| Msa0124690 | Msa0677290 | 0.827010 | 1.981057e-54 | -8.615850e-47 |
| Msa0124690 | Msa0692940 | 0.803664 | 3.129033e-49 | -8.615850e-47 |
| Msa0124690 | Msa0738100 | 0.846566 | 2.004014e-59 | -8.615850e-47 |
| Msa0124690 | Msa0785130 | 0.833988 | 3.885683e-56 | -8.615850e-47 |
| Msa0124690 | Msa0806880 | 0.807426 | 5.084521e-50 | -8.615850e-47 |
| Msa0124690 | Msa0817540 | 0.852298 | 5.058885e-61 | -8.615850e-47 |
| Msa0124690 | Msa1006840 | 0.810983 | 8.787672e-51 | -8.615850e-47 |
| Msa0124690 | Msa1019240 | 0.842577 | 2.375369e-58 | -8.615850e-47 |
| Msa0124690 | Msa1019260 | 0.843615 | 1.256464e-58 | -8.615850e-47 |
| Msa0124690 | Msa1066490 | 0.806138 | 9.513605e-50 | -8.615850e-47 |
| Msa0124690 | Msa1104140 | 0.825064 | 5.746853e-54 | -8.615850e-47 |
| Msa0124690 | Msa1104210 | 0.830727 | 2.495571e-55 | -8.615850e-47 |
| Msa0124690 | Msa1126510 | 0.829699 | 4.446774e-55 | -8.615850e-47 |
| Msa0124690 | Msa1138870 | 0.800984 | 1.115326e-48 | -8.615850e-47 |
| Msa0124690 | Msa1166860 | 0.824658 | 7.165869e-54 | -8.615850e-47 |
| Msa0124690 | Msa1166870 | 0.845377 | 4.218328e-59 | -8.615850e-47 |
| Msa0124690 | Msa1201830 | 0.805960 | 1.036946e-49 | -8.615850e-47 |
| Msa0124690 | Msa1207270 | 0.800401 | 1.466740e-48 | -8.615850e-47 |
| Msa0124690 | Msa1227690 | 0.819509 | 1.118793e-52 | -8.615850e-47 |
| Msa0124690 | Msa1294840 | 0.809960 | 1.461483e-50 | -8.615850e-47 |
| Msa0124690 | Msa1331710 | 0.803603 | 3.221977e-49 | -8.615850e-47 |
| Msa0124690 | Msa1341070 | 0.813201 | 2.885442e-51 | -8.615850e-47 |
| Msa0124690 | Msa1349570 | 0.827987 | 1.154703e-54 | -8.615850e-47 |
| Msa0124690 | Msa1363330 | 0.861672 | 8.702522e-64 | -8.615850e-47 |
| Msa0124690 | Msa1379760 | 0.834550 | 2.809866e-56 | -8.615850e-47 |
| Msa0124690 | Msa1386600 | 0.861448 | 1.018464e-63 | -8.615850e-47 |
| Msa0124690 | Msa1406040 | 0.811166 | 8.020926e-51 | -8.615850e-47 |
| Msa0124690 | Msa1413500 | 0.804546 | 2.051413e-49 | -8.615850e-47 |
| Msa0124690 | Msa1426490 | 0.801633 | 8.214122e-49 | -8.615850e-47 |
| Msa0124690 | Msa1427560 | 0.803533 | 3.332133e-49 | -8.615850e-47 |
| Msa0124690 | Msa1432700 | 0.817553 | 3.106722e-52 | -8.615850e-47 |
| Msa0124690 | Msa1448690 | 0.825879 | 3.683676e-54 | -8.615850e-47 |
| Msa0124690 | Msa1450280 | 0.842759 | 2.125719e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124690 | MtrunA17_Chr1g0185911 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 5.22e-130 | 361 |
| Msa0124690 | MtrunA17_Chr7g0263601 | 70.588 | 170 | 34 | 7 | 11 | 174 | 12 | 171 | 6.98e-75 | 222 |
| Msa0124690 | MtrunA17_Chr5g0446491 | 60.127 | 158 | 49 | 3 | 1 | 150 | 1 | 152 | 3.33e-59 | 182 |
| Msa0124690 | MtrunA17_Chr3g0102351 | 69.600 | 125 | 36 | 1 | 1 | 125 | 1 | 123 | 3.30e-58 | 180 |
| Msa0124690 | MtrunA17_Chr2g0290491 | 65.926 | 135 | 36 | 2 | 9 | 143 | 3 | 127 | 6.34e-58 | 179 |
| Msa0124690 | MtrunA17_Chr8g0382931 | 77.895 | 95 | 21 | 0 | 24 | 118 | 23 | 117 | 1.88e-52 | 166 |
| Msa0124690 | MtrunA17_Chr4g0076321 | 75.758 | 99 | 22 | 1 | 22 | 118 | 10 | 108 | 5.32e-51 | 160 |
| Msa0124690 | MtrunA17_Chr8g0384451 | 73.626 | 91 | 24 | 0 | 28 | 118 | 39 | 129 | 7.26e-50 | 160 |
| Msa0124690 | MtrunA17_Chr1g0195851 | 69.474 | 95 | 29 | 0 | 28 | 122 | 35 | 129 | 1.44e-47 | 153 |
| Msa0124690 | MtrunA17_Chr2g0296321 | 71.429 | 91 | 26 | 0 | 28 | 118 | 65 | 155 | 8.82e-47 | 153 |
| Msa0124690 | MtrunA17_Chr4g0067091 | 70.330 | 91 | 27 | 0 | 28 | 118 | 21 | 111 | 7.43e-46 | 149 |
| Msa0124690 | MtrunA17_Chr4g0076381 | 61.682 | 107 | 37 | 1 | 16 | 118 | 41 | 147 | 5.43e-45 | 148 |
| Msa0124690 | MtrunA17_Chr1g0165041 | 51.562 | 128 | 55 | 2 | 28 | 154 | 5 | 126 | 6.90e-43 | 141 |
| Msa0124690 | MtrunA17_Chr1g0191981 | 57.609 | 92 | 39 | 0 | 29 | 120 | 4 | 95 | 2.45e-37 | 125 |
| Msa0124690 | MtrunA17_Chr1g0159271 | 50.000 | 82 | 41 | 0 | 43 | 124 | 1 | 82 | 3.30e-24 | 91.3 |
| Msa0124690 | MtrunA17_Chr5g0446601 | 44.118 | 102 | 57 | 0 | 22 | 123 | 17 | 118 | 1.11e-23 | 92.0 |
| Msa0124690 | MtrunA17_Chr1g0159291 | 40.789 | 76 | 45 | 0 | 34 | 109 | 7 | 82 | 5.26e-19 | 77.0 |
| Msa0124690 | MtrunA17_Chr2g0307551 | 33.645 | 107 | 71 | 0 | 26 | 132 | 8 | 114 | 6.94e-19 | 79.0 |
| Msa0124690 | MtrunA17_Chr1g0158951 | 61.111 | 54 | 21 | 0 | 64 | 117 | 24 | 77 | 9.44e-19 | 77.0 |
| Msa0124690 | MtrunA17_Chr4g0062271 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 1.70e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124690 | AT2G37060.2 | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.83e-73 | 218 |
| Msa0124690 | AT2G37060.3 | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.83e-73 | 218 |
| Msa0124690 | AT2G37060.1 | 66.864 | 169 | 48 | 5 | 2 | 168 | 6 | 168 | 1.83e-73 | 218 |
| Msa0124690 | AT2G38880.7 | 72.222 | 144 | 29 | 3 | 1 | 143 | 1 | 134 | 1.63e-68 | 205 |
| Msa0124690 | AT3G53340.5 | 68.125 | 160 | 38 | 5 | 17 | 168 | 19 | 173 | 2.12e-67 | 203 |
| Msa0124690 | AT3G53340.1 | 68.125 | 160 | 38 | 5 | 17 | 168 | 19 | 173 | 2.12e-67 | 203 |
| Msa0124690 | AT2G38880.3 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.62e-66 | 200 |
| Msa0124690 | AT2G38880.2 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.91e-66 | 199 |
| Msa0124690 | AT2G38880.1 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.91e-66 | 199 |
| Msa0124690 | AT2G38880.5 | 71.233 | 146 | 29 | 4 | 1 | 143 | 1 | 136 | 1.91e-66 | 199 |
| Msa0124690 | AT2G38880.11 | 61.538 | 169 | 29 | 4 | 1 | 143 | 1 | 159 | 2.57e-62 | 190 |
| Msa0124690 | AT2G38880.8 | 61.538 | 169 | 29 | 4 | 1 | 143 | 1 | 159 | 2.57e-62 | 190 |
| Msa0124690 | AT3G53340.3 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.46e-60 | 185 |
| Msa0124690 | AT3G53340.2 | 81.481 | 108 | 18 | 1 | 17 | 124 | 19 | 124 | 1.46e-60 | 185 |
| Msa0124690 | AT2G38880.4 | 75.630 | 119 | 19 | 2 | 1 | 118 | 1 | 110 | 4.71e-60 | 182 |
| Msa0124690 | AT3G53340.4 | 84.314 | 102 | 14 | 1 | 17 | 118 | 19 | 118 | 1.45e-59 | 181 |
| Msa0124690 | AT2G38880.9 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.77e-59 | 182 |
| Msa0124690 | AT2G38880.10 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.77e-59 | 182 |
| Msa0124690 | AT2G38880.6 | 76.271 | 118 | 20 | 2 | 1 | 118 | 1 | 110 | 2.77e-59 | 182 |
| Msa0124690 | AT4G14540.1 | 72.034 | 118 | 25 | 2 | 1 | 118 | 1 | 110 | 1.88e-58 | 180 |
| Msa0124690 | AT5G47640.1 | 75.214 | 117 | 23 | 2 | 28 | 144 | 26 | 136 | 3.79e-58 | 180 |
| Msa0124690 | AT2G13570.1 | 64.463 | 121 | 34 | 2 | 9 | 120 | 7 | 127 | 1.33e-51 | 164 |
| Msa0124690 | AT2G47810.1 | 68.085 | 94 | 30 | 0 | 24 | 117 | 46 | 139 | 3.88e-45 | 146 |
| Msa0124690 | AT5G47670.2 | 60.577 | 104 | 41 | 0 | 28 | 131 | 28 | 131 | 1.87e-44 | 146 |
| Msa0124690 | AT5G47670.1 | 60.577 | 104 | 41 | 0 | 28 | 131 | 57 | 160 | 4.27e-44 | 146 |
| Msa0124690 | AT5G47670.3 | 60.577 | 104 | 41 | 0 | 28 | 131 | 57 | 160 | 4.27e-44 | 146 |
| Msa0124690 | AT1G21970.1 | 53.913 | 115 | 52 | 1 | 26 | 139 | 56 | 170 | 9.63e-44 | 145 |
| Msa0124690 | AT1G09030.1 | 46.269 | 134 | 64 | 2 | 29 | 154 | 3 | 136 | 6.79e-39 | 130 |
| Msa0124690 | AT5G08190.2 | 38.679 | 106 | 59 | 2 | 29 | 130 | 11 | 114 | 5.83e-20 | 82.0 |
| Msa0124690 | AT5G23090.4 | 36.792 | 106 | 61 | 2 | 30 | 131 | 12 | 115 | 5.47e-19 | 79.3 |
| Msa0124690 | AT5G08190.1 | 41.860 | 86 | 48 | 1 | 29 | 114 | 11 | 94 | 1.47e-18 | 78.6 |
| Msa0124690 | AT5G23090.5 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.32e-18 | 76.6 |
| Msa0124690 | AT5G23090.2 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.32e-18 | 76.6 |
| Msa0124690 | AT5G23090.1 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 6.32e-18 | 76.6 |
| Msa0124690 | AT5G23090.3 | 42.029 | 69 | 38 | 1 | 46 | 114 | 15 | 81 | 2.01e-13 | 64.7 |
Find 62 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTTTCTCTTCTCTTTC+TGG | 0.035702 | 1_3:+52565804 | None:intergenic |
| ATTGTTGTTTCTCTCTTTGA+TGG | 0.244029 | 1_3:-52562689 | Msa0124690:three_prime_UTR |
| GAGAAGAGAAAGACCATTAA+TGG | 0.272230 | 1_3:-52565797 | Msa0124690:CDS |
| TAACAAATCATCTCCATTAA+TGG | 0.277036 | 1_3:+52565784 | None:intergenic |
| CATATTGCAGTTTGTTCATC+AGG | 0.293386 | 1_3:-52565181 | Msa0124690:intron |
| TTATGGGCTATGGCTACTTT+AGG | 0.294228 | 1_3:-52565764 | Msa0124690:CDS |
| TGTCAAAGCACAAATGTTCT+TGG | 0.298403 | 1_3:-52562648 | Msa0124690:three_prime_UTR |
| CGTACCTAGAAAAGTGTATT+TGG | 0.300083 | 1_3:+52566768 | None:intergenic |
| TTTATTATTTCATTTAGTTT+AGG | 0.302585 | 1_3:-52562716 | Msa0124690:three_prime_UTR |
| CATTAGCAGAATCATGAAAA+AGG | 0.328217 | 1_3:-52566453 | Msa0124690:CDS |
| TTTGCTTACAAGGCAAATAT+AGG | 0.342736 | 1_3:+52566819 | None:intergenic |
| TGATTGGATGTTTGCTTACA+AGG | 0.361057 | 1_3:+52566809 | None:intergenic |
| TAATGGAGATGATTTGTTAT+GGG | 0.363879 | 1_3:-52565780 | Msa0124690:CDS |
| TTAATGGAGATGATTTGTTA+TGG | 0.386568 | 1_3:-52565781 | Msa0124690:CDS |
| ACATATTATCTTCCCTTTAG+TGG | 0.405101 | 1_3:+52562843 | None:intergenic |
| TCTCATGGCTTTCTTCGCAT+TGG | 0.422060 | 1_3:+52566549 | None:intergenic |
| TGGCTTTCTTCGCATTGGTT+CGG | 0.429184 | 1_3:+52566554 | None:intergenic |
| CTAAATAGAGTTCTCAAAAC+AGG | 0.432808 | 1_3:+52562772 | None:intergenic |
| GACCTGGAGGACCGCCAACT+TGG | 0.437143 | 1_3:+52565325 | None:intergenic |
| TTAGCTGCCTTGCCCACTAA+AGG | 0.439195 | 1_3:-52562856 | Msa0124690:three_prime_UTR |
| GAGGTGCAACACAATGAAAA+TGG | 0.439869 | 1_3:+52563046 | None:intergenic |
| GCAGGTGCATCCACAACATC+TGG | 0.444089 | 1_3:-52563120 | Msa0124690:intron |
| TAGCTGCCTTGCCCACTAAA+GGG | 0.445753 | 1_3:-52562855 | Msa0124690:three_prime_UTR |
| CTTGCTAGGTACACCTTAAG+TGG | 0.449127 | 1_3:+52565722 | None:intergenic |
| TGGTAGGAAAATGGTGGAAG+AGG | 0.453397 | 1_3:+52563027 | None:intergenic |
| ACAAATGTTCTTGGAAGGAT+TGG | 0.454730 | 1_3:-52562639 | Msa0124690:three_prime_UTR |
| CTCGAGAAGAAACAATTGAT+TGG | 0.456097 | 1_3:+52566793 | None:intergenic |
| GACCAAGTTGGCGGTCCTCC+AGG | 0.458458 | 1_3:-52565327 | Msa0124690:CDS |
| ATTCTGCTAATGTTAGCTAT+AGG | 0.459912 | 1_3:+52566464 | None:intergenic |
| CATATTATCTTCCCTTTAGT+GGG | 0.464109 | 1_3:+52562844 | None:intergenic |
| ATGTTCTTGGAAGGATTGGC+AGG | 0.477353 | 1_3:-52562635 | None:intergenic |
| GTTAGAAACGGTGATGGATC+TGG | 0.482572 | 1_3:-52565357 | Msa0124690:CDS |
| AGACTATATAGAACCACTTA+AGG | 0.485870 | 1_3:-52565735 | Msa0124690:CDS |
| TTTGAGCTATATTGATTCCC+AGG | 0.487521 | 1_3:-52565154 | Msa0124690:intron |
| AAAAGGCTTTACCTTCAAAT+GGG | 0.495925 | 1_3:-52566436 | Msa0124690:CDS |
| AGATGATTTGTTATGGGCTA+TGG | 0.505790 | 1_3:-52565774 | Msa0124690:CDS |
| TCCTCCAGGTCAAAATGCTC+AGG | 0.507423 | 1_3:-52565313 | Msa0124690:intron |
| GATGAACTGAAACAATGGTT+TGG | 0.515083 | 1_3:-52562977 | Msa0124690:three_prime_UTR |
| TCTGTTCACCACCACTCTCA+TGG | 0.515126 | 1_3:+52566534 | None:intergenic |
| CAAAAGATGAACTGAAACAA+TGG | 0.520156 | 1_3:-52562982 | Msa0124690:three_prime_UTR |
| TATCTTCCCTTTAGTGGGCA+AGG | 0.521204 | 1_3:+52562849 | None:intergenic |
| CACAATGAAAATGGCAGGTG+AGG | 0.522585 | 1_3:+52563055 | None:intergenic |
| TGCAACACAATGAAAATGGC+AGG | 0.524060 | 1_3:+52563050 | None:intergenic |
| TTGGTTCGGTGCATCTGCCA+TGG | 0.526473 | 1_3:+52566568 | None:intergenic |
| TTACCTCTCTGAACCTTGCT+AGG | 0.526654 | 1_3:+52565708 | None:intergenic |
| AAAGCACAAATGTTCTTGGA+AGG | 0.544059 | 1_3:-52562644 | Msa0124690:three_prime_UTR |
| AGTAAAGGATCTGTTAGAAA+CGG | 0.549907 | 1_3:-52565369 | Msa0124690:CDS |
| TGTGTAGAAACTAGAAAGCA+TGG | 0.553914 | 1_3:-52562932 | Msa0124690:three_prime_UTR |
| TTCTGATAGGGTGATAGTAA+AGG | 0.555051 | 1_3:-52565384 | Msa0124690:intron |
| CACTTAAGGTGTACCTAGCA+AGG | 0.580922 | 1_3:-52565721 | Msa0124690:CDS |
| GGATCTGTTAGAAACGGTGA+TGG | 0.585242 | 1_3:-52565363 | Msa0124690:CDS |
| ATATTGCAGTTTGTTCATCA+GGG | 0.598604 | 1_3:-52565180 | Msa0124690:intron |
| GGTAGACGAGACCAAGTTGG+CGG | 0.631551 | 1_3:-52565336 | Msa0124690:CDS |
| TCTCATCATGACAAGTTGCA+TGG | 0.631594 | 1_3:+52562799 | None:intergenic |
| GTGTAGAAACTAGAAAGCAT+GGG | 0.636238 | 1_3:-52562931 | Msa0124690:three_prime_UTR |
| TCTGGTAGACGAGACCAAGT+TGG | 0.636481 | 1_3:-52565339 | Msa0124690:CDS |
| TGCGAAGAAAGCCATGAGAG+TGG | 0.653441 | 1_3:-52566545 | Msa0124690:CDS |
| GAAGGCATAACCAGATGTTG+TGG | 0.663094 | 1_3:+52563110 | None:intergenic |
| GGTGGTGAACAGAGTCCACG+TGG | 0.738315 | 1_3:-52566524 | Msa0124690:CDS |
| GAAGAAAGCCATGAGAGTGG+TGG | 0.750494 | 1_3:-52566542 | Msa0124690:CDS |
| GAAGCAGAAGAAGAGCCACG+TGG | 0.770183 | 1_3:+52566509 | None:intergenic |
| GTACCTAGCAAGGTTCAGAG+AGG | 0.773002 | 1_3:-52565711 | Msa0124690:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTTCATTTAGTTT+AGG | - | chr1_3:52566748-52566767 | Msa0124690:intron | 10.0% |
| !!! | AAATAAAAATACTATGGTTT+TGG | + | chr1_3:52563138-52563157 | None:intergenic | 15.0% |
| !!! | GTAATATAAATTTCAGTTTT+TGG | - | chr1_3:52563319-52563338 | Msa0124690:intron | 15.0% |
| !!! | TTTTTTTATACTCTTTTAGA+TGG | - | chr1_3:52563463-52563482 | Msa0124690:intron | 15.0% |
| !!! | TTTTTTATACTCTTTTAGAT+GGG | - | chr1_3:52563464-52563483 | Msa0124690:intron | 15.0% |
| !! | AATTTCAATAATGTTCTTTA+TGG | - | chr1_3:52563883-52563902 | Msa0124690:intron | 15.0% |
| !! | GTATATTGAAAAAAAGTGAA+TGG | + | chr1_3:52562810-52562829 | None:intergenic | 20.0% |
| !!! | TTTTTTTAGTTTCTCTTAGA+TGG | - | chr1_3:52563296-52563315 | Msa0124690:intron | 20.0% |
| !!! | TTTTTTAGTTTCTCTTAGAT+GGG | - | chr1_3:52563297-52563316 | Msa0124690:intron | 20.0% |
| !! | TTTGCTAAATTATTTGATGT+TGG | - | chr1_3:52563378-52563397 | Msa0124690:intron | 20.0% |
| !! | TTGCTAAATTATTTGATGTT+GGG | - | chr1_3:52563379-52563398 | Msa0124690:intron | 20.0% |
| !! | AGAAGGAAAGAAAAAAAAAA+CGG | + | chr1_3:52563925-52563944 | Msa0124700:intron | 20.0% |
| !! | AAATAATACAATCAATCAGA+GGG | + | chr1_3:52564004-52564023 | Msa0124700:CDS | 20.0% |
| !! | AAAATAATACAATCAATCAG+AGG | + | chr1_3:52564005-52564024 | Msa0124700:CDS | 20.0% |
| !! | TTAACATTTGGAAAAAAATG+AGG | + | chr1_3:52564674-52564693 | None:intergenic | 20.0% |
| !!! | ATTTTGATATAGCAAACATT+GGG | + | chr1_3:52564898-52564917 | None:intergenic | 20.0% |
| !!! | AATCAATAAAGTTCTGATAA+AGG | + | chr1_3:52565217-52565236 | None:intergenic | 20.0% |
| !! | AAAGATCAAAGAGAAAAAAA+TGG | + | chr1_3:52565784-52565803 | None:intergenic | 20.0% |
| ! | TATTGAAAAAAAGTGAATGG+TGG | + | chr1_3:52562807-52562826 | None:intergenic | 25.0% |
| !!! | ATTCGTTGGTTTTAGTTTTA+GGG | - | chr1_3:52562865-52562884 | Msa0124690:three_prime_UTR | 25.0% |
| !!! | AATACTATGGTTTTGGAAAT+GGG | + | chr1_3:52563131-52563150 | None:intergenic | 25.0% |
| !!! | AAATACTATGGTTTTGGAAA+TGG | + | chr1_3:52563132-52563151 | None:intergenic | 25.0% |
| !!! | AAATTTCAGTTTTTGGCAAT+TGG | - | chr1_3:52563326-52563345 | Msa0124690:intron | 25.0% |
| !!! | AATTTCAGTTTTTGGCAATT+GGG | - | chr1_3:52563327-52563346 | Msa0124690:intron | 25.0% |
| ! | TTGTCAATTTATGTGATGTT+TGG | - | chr1_3:52563548-52563567 | Msa0124690:intron | 25.0% |
| !!! | TGTTTGGTGGAAAATATTTT+AGG | - | chr1_3:52563564-52563583 | Msa0124690:intron | 25.0% |
| !!! | GTTTGGTGGAAAATATTTTA+GGG | - | chr1_3:52563565-52563584 | Msa0124690:intron | 25.0% |
| ! | TAACAAATCATCTCCATTAA+TGG | + | chr1_3:52563683-52563702 | None:intergenic | 25.0% |
| !!! | TTAATGGAGATGATTTGTTA+TGG | - | chr1_3:52563683-52563702 | Msa0124690:intron | 25.0% |
| !!! | TAATGGAGATGATTTGTTAT+GGG | - | chr1_3:52563684-52563703 | Msa0124690:intron | 25.0% |
| ! | AAACCAAGCATTAACTTAAA+TGG | + | chr1_3:52563801-52563820 | Msa0124700:intron | 25.0% |
| !!! | TTTAAGTTAATGCTTGGTTT+TGG | - | chr1_3:52563801-52563820 | Msa0124690:intron | 25.0% |
| ! | AATAATACAATCAATCAGAG+GGG | + | chr1_3:52564003-52564022 | Msa0124700:CDS | 25.0% |
| !!! | TTGGATTTGTGTTTTTATTC+TGG | - | chr1_3:52564192-52564211 | Msa0124690:intron | 25.0% |
| ! | TATGTACTTTCTCTTGAAAT+TGG | - | chr1_3:52564254-52564273 | Msa0124690:intron | 25.0% |
| !! | TTTAGTTCCAGATTTCAATT+TGG | + | chr1_3:52564618-52564637 | None:intergenic | 25.0% |
| ! | TCAAACTGAATGTTAACATT+TGG | + | chr1_3:52564686-52564705 | None:intergenic | 25.0% |
| !!! | GATTTTGATATAGCAAACAT+TGG | + | chr1_3:52564899-52564918 | None:intergenic | 25.0% |
| !!! | ATGTTTGCTATATCAAAATC+TGG | - | chr1_3:52564899-52564918 | Msa0124690:intron | 25.0% |
| ! | TATATCAAAATCTGGTATTC+AGG | - | chr1_3:52564907-52564926 | Msa0124690:intron | 25.0% |
| ! | ATTGAATTTCAACATAGACA+AGG | + | chr1_3:52564992-52565011 | None:intergenic | 25.0% |
| ! | TCTTCATAATAACTCAATCT+GGG | + | chr1_3:52565016-52565035 | None:intergenic | 25.0% |
| ! | AAGAGCAATCACAATATATA+TGG | + | chr1_3:52565081-52565100 | None:intergenic | 25.0% |
| ! | ATATATATTGTGATTGCTCT+TGG | - | chr1_3:52565080-52565099 | Msa0124690:intron | 25.0% |
| ! | CAAACAAACAAAATTCAGTA+TGG | + | chr1_3:52565524-52565543 | None:intergenic | 25.0% |
| ! | AAGAATTAAGAGTAGTGATT+TGG | - | chr1_3:52566207-52566226 | Msa0124690:intron | 25.0% |
| !! | TATTCATGATTTTGCATTGA+AGG | + | chr1_3:52566375-52566394 | None:intergenic | 25.0% |
| !!! | GGTTTGGTGATTTTAAATTT+AGG | - | chr1_3:52566503-52566522 | Msa0124690:CDS | 25.0% |
| !! | AAAATTTTGTTACGGTATTC+AGG | - | chr1_3:52566560-52566579 | Msa0124690:CDS | 25.0% |
| TTTGCTTACAAGGCAAATAT+AGG | + | chr1_3:52562648-52562667 | None:intergenic | 30.0% | |
| ! | AGTGAATGGTGGAAATTAAA+TGG | + | chr1_3:52562796-52562815 | None:intergenic | 30.0% |
| !! | TTTTCTTTGATCTGATTCGT+TGG | - | chr1_3:52562851-52562870 | Msa0124690:three_prime_UTR | 30.0% |
| !!! | GATTCGTTGGTTTTAGTTTT+AGG | - | chr1_3:52562864-52562883 | Msa0124690:three_prime_UTR | 30.0% |
| ATTCTGCTAATGTTAGCTAT+AGG | + | chr1_3:52563003-52563022 | None:intergenic | 30.0% | |
| CATTAGCAGAATCATGAAAA+AGG | - | chr1_3:52563011-52563030 | Msa0124690:three_prime_UTR | 30.0% | |
| AAAAAGGCTTTACCTTCAAA+TGG | - | chr1_3:52563027-52563046 | Msa0124690:three_prime_UTR | 30.0% | |
| AAAAGGCTTTACCTTCAAAT+GGG | - | chr1_3:52563028-52563047 | Msa0124690:three_prime_UTR | 30.0% | |
| !! | TTTTTGGCAATTGGGTATAT+TGG | - | chr1_3:52563335-52563354 | Msa0124690:intron | 30.0% |
| CTAAATTATTTGATGTTGGG+TGG | - | chr1_3:52563382-52563401 | Msa0124690:intron | 30.0% | |
| TGTTGGGTGGAAAATAATTT+AGG | - | chr1_3:52563395-52563414 | Msa0124690:intron | 30.0% | |
| GTTGGGTGGAAAATAATTTA+GGG | - | chr1_3:52563396-52563415 | Msa0124690:intron | 30.0% | |
| TAGATGGGTGATATAAATTG+TGG | - | chr1_3:52563479-52563498 | Msa0124690:intron | 30.0% | |
| GTGATATAAATTGTGGTTGT+TGG | - | chr1_3:52563486-52563505 | Msa0124690:intron | 30.0% | |
| TCAATTTATGTGATGTTTGG+TGG | - | chr1_3:52563551-52563570 | Msa0124690:intron | 30.0% | |
| !! | TCTTTGTTTGTTGTCTGAAT+TGG | - | chr1_3:52563596-52563615 | Msa0124690:intron | 30.0% |
| ! | TTTGTTGTCTGAATTGGAAA+TGG | - | chr1_3:52563602-52563621 | Msa0124690:intron | 30.0% |
| ! | TGAATTGGAAATGGATGTTT+TGG | - | chr1_3:52563611-52563630 | Msa0124690:intron | 30.0% |
| ! | GAATTGGAAATGGATGTTTT+GGG | - | chr1_3:52563612-52563631 | Msa0124690:intron | 30.0% |
| AGACTATATAGAACCACTTA+AGG | - | chr1_3:52563729-52563748 | Msa0124690:intron | 30.0% | |
| ! | TTGCCATTTAAGTTAATGCT+TGG | - | chr1_3:52563795-52563814 | Msa0124690:intron | 30.0% |
| !!! | TTTTTTCTTTCCTTCTTCCT+TGG | - | chr1_3:52563929-52563948 | Msa0124690:intron | 30.0% |
| AGTAAAGGATCTGTTAGAAA+CGG | - | chr1_3:52564095-52564114 | Msa0124690:intron | 30.0% | |
| !! | TTTTTATTCTGGTGACTTGT+TGG | - | chr1_3:52564203-52564222 | Msa0124690:intron | 30.0% |
| ! | ATATTGCAGTTTGTTCATCA+GGG | - | chr1_3:52564284-52564303 | Msa0124690:intron | 30.0% |
| AACAAGTTCATGCTCATTTA+TGG | - | chr1_3:52564385-52564404 | Msa0124690:intron | 30.0% | |
| CAATACATGTTGCCAATTTA+AGG | - | chr1_3:52564463-52564482 | Msa0124690:intron | 30.0% | |
| TTTCGACTGAATCAATGAAT+TGG | + | chr1_3:52564504-52564523 | None:intergenic | 30.0% | |
| TTGATTCAGTCGAAATAGAT+TGG | - | chr1_3:52564509-52564528 | Msa0124690:intron | 30.0% | |
| TGATTCAGTCGAAATAGATT+GGG | - | chr1_3:52564510-52564529 | Msa0124690:intron | 30.0% | |
| TATGTAAGCAGATAATTACG+TGG | + | chr1_3:52564587-52564606 | None:intergenic | 30.0% | |
| CAGATTTCAATTTGGATGAT+TGG | + | chr1_3:52564610-52564629 | None:intergenic | 30.0% | |
| CAATCATCCAAATTGAAATC+TGG | - | chr1_3:52564608-52564627 | Msa0124690:intron | 30.0% | |
| AAAACAGAATGGATCAATAG+GGG | + | chr1_3:52564946-52564965 | None:intergenic | 30.0% | |
| CAAAACAGAATGGATCAATA+GGG | + | chr1_3:52564947-52564966 | None:intergenic | 30.0% | |
| TCAAAACAGAATGGATCAAT+AGG | + | chr1_3:52564948-52564967 | None:intergenic | 30.0% | |
| !! | ATCCATTCTGTTTTGAGTAT+CGG | - | chr1_3:52564952-52564971 | Msa0124690:intron | 30.0% |
| GTCTTCATAATAACTCAATC+TGG | + | chr1_3:52565017-52565036 | None:intergenic | 30.0% | |
| CAATCACAATATATATGGTG+GGG | + | chr1_3:52565076-52565095 | None:intergenic | 30.0% | |
| GCAATCACAATATATATGGT+GGG | + | chr1_3:52565077-52565096 | None:intergenic | 30.0% | |
| AGCAATCACAATATATATGG+TGG | + | chr1_3:52565078-52565097 | None:intergenic | 30.0% | |
| GAAAACAGAGAGATAGAAAT+CGG | + | chr1_3:52565153-52565172 | None:intergenic | 30.0% | |
| !!! | CAACTGACAATTGTTTTTTG+CGG | - | chr1_3:52565319-52565338 | Msa0124690:CDS | 30.0% |
| TGGTTGTGTTAATAACCTTT+AGG | - | chr1_3:52565352-52565371 | Msa0124690:CDS | 30.0% | |
| ! | CCAATATGGTACTATCTTTT+GGG | + | chr1_3:52565455-52565474 | None:intergenic | 30.0% |
| ! | TCCAATATGGTACTATCTTT+TGG | + | chr1_3:52565456-52565475 | None:intergenic | 30.0% |
| ATTCGAAAGTTACAAACCAA+AGG | + | chr1_3:52565587-52565606 | None:intergenic | 30.0% | |
| TAATAGTAGCATCAGATTTG+TGG | + | chr1_3:52565852-52565871 | None:intergenic | 30.0% | |
| TCAAACAAAAGCTCAAATGT+GGG | + | chr1_3:52566068-52566087 | None:intergenic | 30.0% | |
| ATCAAACAAAAGCTCAAATG+TGG | + | chr1_3:52566069-52566088 | None:intergenic | 30.0% | |
| !! | CTGATTTTGACATGACAATT+CGG | - | chr1_3:52566097-52566116 | Msa0124690:intron | 30.0% |
| CCTAAGAAATATGTTCATAG+TGG | + | chr1_3:52566292-52566311 | None:intergenic | 30.0% | |
| CCACTATGAACATATTTCTT+AGG | - | chr1_3:52566289-52566308 | Msa0124690:intron | 30.0% | |
| !! | TTGTCTTTTTGGTAGGAAAA+TGG | + | chr1_3:52566449-52566468 | None:intergenic | 30.0% |
| ! | TTGTTTCAGTTCATCTTTTG+AGG | + | chr1_3:52566482-52566501 | None:intergenic | 30.0% |
| CAAAAGATGAACTGAAACAA+TGG | - | chr1_3:52566482-52566501 | Msa0124690:CDS | 30.0% | |
| ! | TGGGTGTCAAAATTTTGTTA+CGG | - | chr1_3:52566552-52566571 | Msa0124690:CDS | 30.0% |
| CATATTATCTTCCCTTTAGT+GGG | + | chr1_3:52566623-52566642 | None:intergenic | 30.0% | |
| ACATATTATCTTCCCTTTAG+TGG | + | chr1_3:52566624-52566643 | None:intergenic | 30.0% | |
| CTAAATAGAGTTCTCAAAAC+AGG | + | chr1_3:52566695-52566714 | None:intergenic | 30.0% | |
| !! | ATTGTTGTTTCTCTCTTTGA+TGG | - | chr1_3:52566775-52566794 | Msa0124690:five_prime_UTR | 30.0% |
| TGATTGGATGTTTGCTTACA+AGG | + | chr1_3:52562658-52562677 | None:intergenic | 35.0% | |
| CTCGAGAAGAAACAATTGAT+TGG | + | chr1_3:52562674-52562693 | None:intergenic | 35.0% | |
| ! | CGTACCTAGAAAAGTGTATT+TGG | + | chr1_3:52562699-52562718 | None:intergenic | 35.0% |
| TGCACATGGATGAAATTGAA+TGG | + | chr1_3:52562744-52562763 | None:intergenic | 35.0% | |
| ! | AAATGGTGATAGTGACAGAA+CGG | + | chr1_3:52562779-52562798 | None:intergenic | 35.0% |
| ! | TTCGCAATTTTCCCATTTGA+AGG | + | chr1_3:52563042-52563061 | None:intergenic | 35.0% |
| AAATTGTGGTTGTTGGCAAA+TGG | - | chr1_3:52563493-52563512 | Msa0124690:intron | 35.0% | |
| AATTGTGGTTGTTGGCAAAT+GGG | - | chr1_3:52563494-52563513 | Msa0124690:intron | 35.0% | |
| GAGAAGAGAAAGACCATTAA+TGG | - | chr1_3:52563667-52563686 | Msa0124690:intron | 35.0% | |
| !! | AGATGATTTGTTATGGGCTA+TGG | - | chr1_3:52563690-52563709 | Msa0124690:intron | 35.0% |
| TTCTGATAGGGTGATAGTAA+AGG | - | chr1_3:52564080-52564099 | Msa0124690:intron | 35.0% | |
| !!! | GTGTGATTGCACAACTTTTT+TGG | - | chr1_3:52564173-52564192 | Msa0124690:intron | 35.0% |
| ! | CATATTGCAGTTTGTTCATC+AGG | - | chr1_3:52564283-52564302 | Msa0124690:intron | 35.0% |
| !! | TTTGAGCTATATTGATTCCC+AGG | - | chr1_3:52564310-52564329 | Msa0124690:intron | 35.0% |
| ! | ATGTTGCCAATTTAAGGCTA+TGG | - | chr1_3:52564469-52564488 | Msa0124690:intron | 35.0% |
| ! | AGCTAACCATAGCCTTAAAT+TGG | + | chr1_3:52564478-52564497 | None:intergenic | 35.0% |
| GATTCAGTCGAAATAGATTG+GGG | - | chr1_3:52564511-52564530 | Msa0124690:intron | 35.0% | |
| GATAATTACGTGGATAATCC+TGG | + | chr1_3:52564577-52564596 | None:intergenic | 35.0% | |
| AAAAATGAGGAAGCAAGGTA+AGG | + | chr1_3:52564661-52564680 | None:intergenic | 35.0% | |
| TGGAAAAAAATGAGGAAGCA+AGG | + | chr1_3:52564666-52564685 | None:intergenic | 35.0% | |
| ! | TTTGAGATCGTGTATTTCCT+GGG | - | chr1_3:52564701-52564720 | Msa0124690:intron | 35.0% |
| CAGGACAGTGTAACTTATAT+GGG | + | chr1_3:52564737-52564756 | None:intergenic | 35.0% | |
| ACAGGACAGTGTAACTTATA+TGG | + | chr1_3:52564738-52564757 | None:intergenic | 35.0% | |
| TTATCTCAGTCTAACTATCC+AGG | - | chr1_3:52564774-52564793 | Msa0124690:intron | 35.0% | |
| TATCTCAGTCTAACTATCCA+GGG | - | chr1_3:52564775-52564794 | Msa0124690:intron | 35.0% | |
| TCACGAAAAAAAAAGTTCCC+TGG | + | chr1_3:52564795-52564814 | None:intergenic | 35.0% | |
| !!! | TGACCTCAAGATCTCTTTTT+TGG | - | chr1_3:52564812-52564831 | Msa0124690:intron | 35.0% |
| ! | AGTTTGGAGTATGAGATAAG+TGG | + | chr1_3:52564838-52564857 | None:intergenic | 35.0% |
| AATCTGGTATTCAGGTCTAA+TGG | - | chr1_3:52564915-52564934 | Msa0124690:intron | 35.0% | |
| ATCTGGTATTCAGGTCTAAT+GGG | - | chr1_3:52564916-52564935 | Msa0124690:intron | 35.0% | |
| GAGAAAGAGTGAGAAGATTA+GGG | + | chr1_3:52565175-52565194 | None:intergenic | 35.0% | |
| AGAGAAAGAGTGAGAAGATT+AGG | + | chr1_3:52565176-52565195 | None:intergenic | 35.0% | |
| AGACAATAGCTAGCTAAAGT+TGG | + | chr1_3:52565257-52565276 | None:intergenic | 35.0% | |
| TGTTATGCAGCTGTTAGATT+CGG | + | chr1_3:52565292-52565311 | None:intergenic | 35.0% | |
| !!! | TTTTTTGCGGCATCTTCTAT+TGG | - | chr1_3:52565332-52565351 | Msa0124690:CDS | 35.0% |
| TTAATAACCTTTAGGCCTGA+AGG | - | chr1_3:52565360-52565379 | Msa0124690:CDS | 35.0% | |
| GTACTGTTATGCATTCTACT+GGG | + | chr1_3:52565409-52565428 | None:intergenic | 35.0% | |
| AGTACTGTTATGCATTCTAC+TGG | + | chr1_3:52565410-52565429 | None:intergenic | 35.0% | |
| CCCAAAAGATAGTACCATAT+TGG | - | chr1_3:52565452-52565471 | Msa0124690:intron | 35.0% | |
| TCTCTAAACATATCAGTCCT+GGG | + | chr1_3:52565484-52565503 | None:intergenic | 35.0% | |
| ATCTCTAAACATATCAGTCC+TGG | + | chr1_3:52565485-52565504 | None:intergenic | 35.0% | |
| AGGACTGATATGTTTAGAGA+TGG | - | chr1_3:52565484-52565503 | Msa0124690:intron | 35.0% | |
| GGACTGATATGTTTAGAGAT+GGG | - | chr1_3:52565485-52565504 | Msa0124690:intron | 35.0% | |
| ATACCATGACATATGACCTT+TGG | - | chr1_3:52565568-52565587 | Msa0124690:intron | 35.0% | |
| AAACCAAAGGTCATATGTCA+TGG | + | chr1_3:52565574-52565593 | None:intergenic | 35.0% | |
| ACTTTCGAATGTACTTCCAT+TGG | - | chr1_3:52565597-52565616 | Msa0124690:intron | 35.0% | |
| CTTTCGAATGTACTTCCATT+GGG | - | chr1_3:52565598-52565617 | Msa0124690:intron | 35.0% | |
| !! | CTTCCATTGGGTTGATAATA+AGG | - | chr1_3:52565610-52565629 | Msa0124690:intron | 35.0% |
| ACTCCTTATTATCAACCCAA+TGG | + | chr1_3:52565616-52565635 | None:intergenic | 35.0% | |
| !! | GTTGATAATAAGGAGTCACT+GGG | - | chr1_3:52565620-52565639 | Msa0124690:intron | 35.0% |
| !!! | GGTAAGCTAGATTGTTTTTG+TGG | + | chr1_3:52565655-52565674 | None:intergenic | 35.0% |
| CAGAAATAATGACAGGATCA+TGG | + | chr1_3:52565733-52565752 | None:intergenic | 35.0% | |
| !! | ATGAAAATCAGAAGAGCATC+AGG | + | chr1_3:52565756-52565775 | None:intergenic | 35.0% |
| !!! | TCTGTAATTTTGCTGTTCAG+TGG | - | chr1_3:52565874-52565893 | Msa0124690:intron | 35.0% |
| GCTGTTCAGTGGTATTATAT+AGG | - | chr1_3:52565885-52565904 | Msa0124690:intron | 35.0% | |
| TATTCGATTGAGTAACACTC+CGG | - | chr1_3:52565959-52565978 | Msa0124690:intron | 35.0% | |
| TAGAGAACAACCAAACACAT+CGG | + | chr1_3:52565985-52566004 | None:intergenic | 35.0% | |
| GGTTGAGACTGAAAATAATC+TGG | - | chr1_3:52566020-52566039 | Msa0124690:intron | 35.0% | |
| CTGAAAATAATCTGGATGTC+TGG | - | chr1_3:52566028-52566047 | Msa0124690:intron | 35.0% | |
| ! | CTGACGATATAACATGGTTT+TGG | + | chr1_3:52566148-52566167 | None:intergenic | 35.0% |
| AGTACTCTGACGATATAACA+TGG | + | chr1_3:52566154-52566173 | None:intergenic | 35.0% | |
| !! | TTAATCTGTTGCTGATTTGC+AGG | - | chr1_3:52566326-52566345 | Msa0124690:intron | 35.0% |
| !! | TCTTTTTGGTAGGAAAATGG+TGG | + | chr1_3:52566446-52566465 | None:intergenic | 35.0% |
| !! | AGCTTCTTTGTCTTTTTGGT+AGG | + | chr1_3:52566456-52566475 | None:intergenic | 35.0% |
| ! | GAGAAGCTTCTTTGTCTTTT+TGG | + | chr1_3:52566460-52566479 | None:intergenic | 35.0% |
| GATGAACTGAAACAATGGTT+TGG | - | chr1_3:52566487-52566506 | Msa0124690:CDS | 35.0% | |
| TGTGTAGAAACTAGAAAGCA+TGG | - | chr1_3:52566532-52566551 | Msa0124690:CDS | 35.0% | |
| ! | GTGTAGAAACTAGAAAGCAT+GGG | - | chr1_3:52566533-52566552 | Msa0124690:CDS | 35.0% |
| TGTCAAAGCACAAATGTTCT+TGG | - | chr1_3:52566816-52566835 | Msa0124690:five_prime_UTR | 35.0% | |
| AAAGCACAAATGTTCTTGGA+AGG | - | chr1_3:52566820-52566839 | Msa0124690:five_prime_UTR | 35.0% | |
| ACAAATGTTCTTGGAAGGAT+TGG | - | chr1_3:52566825-52566844 | Msa0124690:five_prime_UTR | 35.0% | |
| ! | AGCGCCAAATACACTTTTCT+AGG | - | chr1_3:52562692-52562711 | Msa0124690:three_prime_UTR | 40.0% |
| ! | GGTAAGATCTGAAATGCACA+TGG | + | chr1_3:52562758-52562777 | None:intergenic | 40.0% |
| ATTGTGGTTGTTGGCAAATG+GGG | - | chr1_3:52563495-52563514 | Msa0124690:intron | 40.0% | |
| TGTTGGCAAATGGGGTAAAT+TGG | - | chr1_3:52563503-52563522 | Msa0124690:intron | 40.0% | |
| !! | TGGAAATGGATGTTTTGGGT+TGG | - | chr1_3:52563616-52563635 | Msa0124690:intron | 40.0% |
| !!! | GATGTTTTGGGTTGGTTGTA+GGG | - | chr1_3:52563624-52563643 | Msa0124690:intron | 40.0% |
| TGGTCTTTCTCTTCTCTTTC+TGG | + | chr1_3:52563663-52563682 | None:intergenic | 40.0% | |
| ! | TTATGGGCTATGGCTACTTT+AGG | - | chr1_3:52563700-52563719 | Msa0124690:intron | 40.0% |
| !! | TCCTTCTTCCTTGGTGATTT+TGG | - | chr1_3:52563938-52563957 | Msa0124690:intron | 40.0% |
| TCCAAAATCACCAAGGAAGA+AGG | + | chr1_3:52563942-52563961 | Msa0124700:intron | 40.0% | |
| TCGACATTCCAAAATCACCA+AGG | + | chr1_3:52563949-52563968 | Msa0124700:intron | 40.0% | |
| !!! | TGGTGATTTTGGAATGTCGA+CGG | - | chr1_3:52563949-52563968 | Msa0124690:intron | 40.0% |
| AATACAATCAATCAGAGGGG+AGG | + | chr1_3:52564000-52564019 | Msa0124700:CDS | 40.0% | |
| ACCTTAGACTATCTTGCCAA+CGG | - | chr1_3:52564032-52564051 | Msa0124690:intron | 40.0% | |
| TATCACCCTATCAGAAACCA+TGG | + | chr1_3:52564076-52564095 | Msa0124700:CDS | 40.0% | |
| !! | GTGACTTGTTGGTCAAAACA+AGG | - | chr1_3:52564214-52564233 | Msa0124690:intron | 40.0% |
| AGACAGAGAGATTGTTACCT+GGG | + | chr1_3:52564330-52564349 | None:intergenic | 40.0% | |
| TCACCGAACTCTTATCTGAT+TGG | - | chr1_3:52564551-52564570 | Msa0124690:intron | 40.0% | |
| TGGCCAATCAGATAAGAGTT+CGG | + | chr1_3:52564557-52564576 | None:intergenic | 40.0% | |
| ! | GTTTGAGATCGTGTATTTCC+TGG | - | chr1_3:52564700-52564719 | Msa0124690:intron | 40.0% |
| TGGCCAAAAAAGAGATCTTG+AGG | + | chr1_3:52564818-52564837 | None:intergenic | 40.0% | |
| TGCCGATACTCAAAACAGAA+TGG | + | chr1_3:52564957-52564976 | None:intergenic | 40.0% | |
| AACATGCCAAGAGTTACTCT+TGG | - | chr1_3:52565039-52565058 | Msa0124690:intron | 40.0% | |
| GCAATATGGTACTATCCTTC+AGG | + | chr1_3:52565378-52565397 | None:intergenic | 40.0% | |
| !! | TATCTTTTGGGTCTGGTCTA+GGG | + | chr1_3:52565443-52565462 | None:intergenic | 40.0% |
| !! | ATGGTACTATCTTTTGGGTC+TGG | + | chr1_3:52565450-52565469 | None:intergenic | 40.0% |
| TACCATATTGGAATTCACCC+AGG | - | chr1_3:52565464-52565483 | Msa0124690:intron | 40.0% | |
| !! | GGTTGATAATAAGGAGTCAC+TGG | - | chr1_3:52565619-52565638 | Msa0124690:intron | 40.0% |
| CATCAGGCAGAAATAATGAC+AGG | + | chr1_3:52565740-52565759 | None:intergenic | 40.0% | |
| ACTAAGTGTGACAAACAAGG+TGG | + | chr1_3:52565828-52565847 | None:intergenic | 40.0% | |
| GGTACTAAGTGTGACAAACA+AGG | + | chr1_3:52565831-52565850 | None:intergenic | 40.0% | |
| ATACAAGTAGAGCAGGACAA+AGG | + | chr1_3:52565920-52565939 | None:intergenic | 40.0% | |
| GTTCATGATACAAGTAGAGC+AGG | + | chr1_3:52565927-52565946 | None:intergenic | 40.0% | |
| GTGTTTGGTTGTTCTCTATC+TGG | - | chr1_3:52565987-52566006 | Msa0124690:intron | 40.0% | |
| TCTCTATCTGGCTAACTCTA+CGG | - | chr1_3:52565999-52566018 | Msa0124690:intron | 40.0% | |
| TGCAACACAATGAAAATGGC+AGG | + | chr1_3:52566417-52566436 | None:intergenic | 40.0% | |
| GAGGTGCAACACAATGAAAA+TGG | + | chr1_3:52566421-52566440 | None:intergenic | 40.0% | |
| TCTCATCATGACAAGTTGCA+TGG | + | chr1_3:52566668-52566687 | None:intergenic | 40.0% | |
| !!! | GTTTTAGGGTTTATGCGCCA+TGG | - | chr1_3:52562879-52562898 | Msa0124690:three_prime_UTR | 45.0% |
| !! | TGGCTTTCTTCGCATTGGTT+CGG | + | chr1_3:52562913-52562932 | None:intergenic | 45.0% |
| TCTCATGGCTTTCTTCGCAT+TGG | + | chr1_3:52562918-52562937 | None:intergenic | 45.0% | |
| !!! | GGATGTTTTGGGTTGGTTGT+AGG | - | chr1_3:52563623-52563642 | Msa0124690:intron | 45.0% |
| CTTGCTAGGTACACCTTAAG+TGG | + | chr1_3:52563745-52563764 | Msa0124700:CDS | 45.0% | |
| CACTTAAGGTGTACCTAGCA+AGG | - | chr1_3:52563743-52563762 | Msa0124690:intron | 45.0% | |
| TTACCTCTCTGAACCTTGCT+AGG | + | chr1_3:52563759-52563778 | Msa0124700:CDS | 45.0% | |
| TCGACGGATATCACAGTTAG+AGG | - | chr1_3:52563965-52563984 | Msa0124690:intron | 45.0% | |
| TCCGTTGGCAAGATAGTCTA+AGG | + | chr1_3:52564036-52564055 | Msa0124700:CDS | 45.0% | |
| CACAGATGTTAGCATTCCGT+TGG | + | chr1_3:52564051-52564070 | Msa0124700:CDS | 45.0% | |
| ATGCTAACATCTGTGAGCCA+TGG | - | chr1_3:52564056-52564075 | Msa0124690:intron | 45.0% | |
| TGTGAGCCATGGTTTCTGAT+AGG | - | chr1_3:52564067-52564086 | Msa0124690:intron | 45.0% | |
| GTGAGCCATGGTTTCTGATA+GGG | - | chr1_3:52564068-52564087 | Msa0124690:intron | 45.0% | |
| GGATCTGTTAGAAACGGTGA+TGG | - | chr1_3:52564101-52564120 | Msa0124690:intron | 45.0% | |
| !! | GTTAGAAACGGTGATGGATC+TGG | - | chr1_3:52564107-52564126 | Msa0124690:intron | 45.0% |
| GAGACAGAGAGATTGTTACC+TGG | + | chr1_3:52564331-52564350 | None:intergenic | 45.0% | |
| AGTCGAAATAGATTGGGGAC+AGG | - | chr1_3:52564516-52564535 | Msa0124690:intron | 45.0% | |
| ! | GAACTCTTATCTGATTGGCC+AGG | - | chr1_3:52564556-52564575 | Msa0124690:intron | 45.0% |
| ATATGGGAAGATGAGTACCC+AGG | + | chr1_3:52564721-52564740 | None:intergenic | 45.0% | |
| GAGATAAAAACCCTGCATGC+AGG | + | chr1_3:52564761-52564780 | None:intergenic | 45.0% | |
| TGAATGCTGTGGAGCAGAAT+GGG | + | chr1_3:52564875-52564894 | None:intergenic | 45.0% | |
| CAAACATTGGGTGAATGCTG+TGG | + | chr1_3:52564886-52564905 | None:intergenic | 45.0% | |
| CCAACTCCAAGAGTAACTCT+TGG | + | chr1_3:52565048-52565067 | None:intergenic | 45.0% | |
| CCAAGAGTTACTCTTGGAGT+TGG | - | chr1_3:52565045-52565064 | Msa0124690:intron | 45.0% | |
| AGAGTTACTCTTGGAGTTGG+TGG | - | chr1_3:52565048-52565067 | Msa0124690:intron | 45.0% | |
| GTACTATCCTTCAGGCCTAA+AGG | + | chr1_3:52565370-52565389 | None:intergenic | 45.0% | |
| !! | ATCTTTTGGGTCTGGTCTAG+GGG | + | chr1_3:52565442-52565461 | None:intergenic | 45.0% |
| !! | CTATCTTTTGGGTCTGGTCT+AGG | + | chr1_3:52565444-52565463 | None:intergenic | 45.0% |
| GTCCTGGGTGAATTCCAATA+TGG | + | chr1_3:52565469-52565488 | None:intergenic | 45.0% | |
| GCATTTGCTCTCAAGCAACT+TGG | + | chr1_3:52565676-52565695 | None:intergenic | 45.0% | |
| GCTGAGTGGAGTTTAGTGAT+AGG | - | chr1_3:52565694-52565713 | Msa0124690:intron | 45.0% | |
| ! | GAAGGCATAACCAGATGTTG+TGG | + | chr1_3:52566357-52566376 | None:intergenic | 45.0% |
| CACAATGAAAATGGCAGGTG+AGG | + | chr1_3:52566412-52566431 | None:intergenic | 45.0% | |
| ! | TGGTAGGAAAATGGTGGAAG+AGG | + | chr1_3:52566440-52566459 | None:intergenic | 45.0% |
| ! | TATCTTCCCTTTAGTGGGCA+AGG | + | chr1_3:52566618-52566637 | None:intergenic | 45.0% |
| !! | TAAAAAAAATAAAAATACTA+TGG | + | chr1_3:52563144-52563163 | None:intergenic | 5.0% |
| TGCGAAGAAAGCCATGAGAG+TGG | - | chr1_3:52562919-52562938 | Msa0124690:three_prime_UTR | 50.0% | |
| GAAGAAAGCCATGAGAGTGG+TGG | - | chr1_3:52562922-52562941 | Msa0124690:three_prime_UTR | 50.0% | |
| TCTGTTCACCACCACTCTCA+TGG | + | chr1_3:52562933-52562952 | None:intergenic | 50.0% | |
| GTACCTAGCAAGGTTCAGAG+AGG | - | chr1_3:52563753-52563772 | Msa0124690:intron | 50.0% | |
| TCTGGTAGACGAGACCAAGT+TGG | - | chr1_3:52564125-52564144 | Msa0124690:intron | 50.0% | |
| TCCTCCAGGTCAAAATGCTC+AGG | - | chr1_3:52564151-52564170 | Msa0124690:intron | 50.0% | |
| !! | ACCTGAGCATTTTGACCTGG+AGG | + | chr1_3:52564155-52564174 | Msa0124700:CDS | 50.0% |
| !! | CACACCTGAGCATTTTGACC+TGG | + | chr1_3:52564158-52564177 | Msa0124700:CDS | 50.0% |
| AAAAACCCTGCATGCAGGAC+AGG | + | chr1_3:52564756-52564775 | None:intergenic | 50.0% | |
| GAATGCTGTGGAGCAGAATG+GGG | + | chr1_3:52564874-52564893 | None:intergenic | 50.0% | |
| GTGAATGCTGTGGAGCAGAA+TGG | + | chr1_3:52564876-52564895 | None:intergenic | 50.0% | |
| TGCATTCTACTGGGTGCTCT+GGG | + | chr1_3:52565400-52565419 | None:intergenic | 50.0% | |
| ATGCATTCTACTGGGTGCTC+TGG | + | chr1_3:52565401-52565420 | None:intergenic | 50.0% | |
| ! | GTTTGAAGCCACCAATCACG+AGG | - | chr1_3:52565539-52565558 | Msa0124690:intron | 50.0% |
| ATCTCTAGCCTCGTGATTGG+TGG | + | chr1_3:52565550-52565569 | None:intergenic | 50.0% | |
| GGTATCTCTAGCCTCGTGAT+TGG | + | chr1_3:52565553-52565572 | None:intergenic | 50.0% | |
| GCTTGAGAGCAAATGCTGAG+TGG | - | chr1_3:52565680-52565699 | Msa0124690:intron | 50.0% | |
| GAACAACCAAACACATCGGC+CGG | + | chr1_3:52565981-52566000 | None:intergenic | 50.0% | |
| TTAGCTGCCTTGCCCACTAA+AGG | - | chr1_3:52566608-52566627 | Msa0124690:intron | 50.0% | |
| TAGCTGCCTTGCCCACTAAA+GGG | - | chr1_3:52566609-52566628 | Msa0124690:intron | 50.0% | |
| !! | TTGGTTCGGTGCATCTGCCA+TGG | + | chr1_3:52562899-52562918 | None:intergenic | 55.0% |
| GAAGCAGAAGAAGAGCCACG+TGG | + | chr1_3:52562958-52562977 | None:intergenic | 55.0% | |
| ! | GGTAGACGAGACCAAGTTGG+CGG | - | chr1_3:52564128-52564147 | Msa0124690:intron | 55.0% |
| ACTGTCCTGTCCTGCATGCA+GGG | - | chr1_3:52564748-52564767 | Msa0124690:intron | 55.0% | |
| ! | ACTGGGTGCTCTGGGCAATA+TGG | + | chr1_3:52565392-52565411 | None:intergenic | 55.0% |
| AACACTCCGGCCGATGTGTT+TGG | - | chr1_3:52565972-52565991 | Msa0124690:intron | 55.0% | |
| GCAGGTGCATCCACAACATC+TGG | - | chr1_3:52566344-52566363 | Msa0124690:intron | 55.0% | |
| GGTGGTGAACAGAGTCCACG+TGG | - | chr1_3:52562940-52562959 | Msa0124690:three_prime_UTR | 60.0% | |
| CACTGTCCTGTCCTGCATGC+AGG | - | chr1_3:52564747-52564766 | Msa0124690:intron | 60.0% | |
| ! | GGGACTGGTGGGGATGAGTT+TGG | + | chr1_3:52564854-52564873 | None:intergenic | 60.0% |
| ! | GAGCAGAATGGGGACTGGTG+GGG | + | chr1_3:52564864-52564883 | None:intergenic | 60.0% |
| ! | GGAGCAGAATGGGGACTGGT+GGG | + | chr1_3:52564865-52564884 | None:intergenic | 60.0% |
| TGGAGCAGAATGGGGACTGG+TGG | + | chr1_3:52564866-52564885 | None:intergenic | 60.0% | |
| CTGTGGAGCAGAATGGGGAC+TGG | + | chr1_3:52564869-52564888 | None:intergenic | 60.0% | |
| ! | GACCAAGTTGGCGGTCCTCC+AGG | - | chr1_3:52564137-52564156 | Msa0124690:intron | 65.0% |
| GACCTGGAGGACCGCCAACT+TGG | + | chr1_3:52564142-52564161 | Msa0124700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52562637 | 52566849 | 52562637 | ID=Msa0124690;Name=Msa0124690 |
| chr1_3 | mRNA | 52562637 | 52566849 | 52562637 | ID=Msa0124690-mRNA-1;Parent=Msa0124690;Name=Msa0124690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=95|0.8|0.83|1|0.6|0.5|6|454|174 |
| chr1_3 | exon | 52562637 | 52563138 | 52562637 | ID=Msa0124690-mRNA-1:exon:16159;Parent=Msa0124690-mRNA-1 |
| chr1_3 | exon | 52565155 | 52565193 | 52565155 | ID=Msa0124690-mRNA-1:exon:16158;Parent=Msa0124690-mRNA-1 |
| chr1_3 | exon | 52565314 | 52565397 | 52565314 | ID=Msa0124690-mRNA-1:exon:16157;Parent=Msa0124690-mRNA-1 |
| chr1_3 | exon | 52565712 | 52565841 | 52565712 | ID=Msa0124690-mRNA-1:exon:16156;Parent=Msa0124690-mRNA-1 |
| chr1_3 | exon | 52566365 | 52566606 | 52566365 | ID=Msa0124690-mRNA-1:exon:16155;Parent=Msa0124690-mRNA-1 |
| chr1_3 | exon | 52566773 | 52566849 | 52566773 | ID=Msa0124690-mRNA-1:exon:16154;Parent=Msa0124690-mRNA-1 |
| chr1_3 | five_prime_UTR | 52566773 | 52566849 | 52566773 | ID=Msa0124690-mRNA-1:five_prime_utr;Parent=Msa0124690-mRNA-1 |
| chr1_3 | five_prime_UTR | 52566589 | 52566606 | 52566589 | ID=Msa0124690-mRNA-1:five_prime_utr;Parent=Msa0124690-mRNA-1 |
| chr1_3 | CDS | 52566365 | 52566588 | 52566365 | ID=Msa0124690-mRNA-1:cds;Parent=Msa0124690-mRNA-1 |
| chr1_3 | CDS | 52565712 | 52565841 | 52565712 | ID=Msa0124690-mRNA-1:cds;Parent=Msa0124690-mRNA-1 |
| chr1_3 | CDS | 52565314 | 52565397 | 52565314 | ID=Msa0124690-mRNA-1:cds;Parent=Msa0124690-mRNA-1 |
| chr1_3 | CDS | 52565155 | 52565193 | 52565155 | ID=Msa0124690-mRNA-1:cds;Parent=Msa0124690-mRNA-1 |
| chr1_3 | CDS | 52563091 | 52563138 | 52563091 | ID=Msa0124690-mRNA-1:cds;Parent=Msa0124690-mRNA-1 |
| chr1_3 | three_prime_UTR | 52562637 | 52563090 | 52562637 | ID=Msa0124690-mRNA-1:three_prime_utr;Parent=Msa0124690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
