Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179040 | XP_013470003.1 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 2.20e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179040 | sp|Q948Z4|SNAK1_SOLTU | 71.233 | 73 | 19 | 1 | 18 | 90 | 18 | 88 | 5.53e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179040 | A0A072VQU0 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 1.05e-56 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0179040 | 0.815135 | 1.079461e-51 | -8.615850e-47 |
| Msa0033610 | Msa0179040 | 0.829247 | 5.727857e-55 | -8.615850e-47 |
| Msa0033640 | Msa0179040 | 0.800013 | 1.758567e-48 | -8.615850e-47 |
| Msa0041910 | Msa0179040 | 0.989289 | 1.731521e-177 | -8.615850e-47 |
| Msa0050530 | Msa0179040 | 0.842413 | 2.625254e-58 | -8.615850e-47 |
| Msa0100600 | Msa0179040 | 0.836418 | 9.467939e-57 | -8.615850e-47 |
| Msa0100890 | Msa0179040 | 0.826601 | 2.481104e-54 | -8.615850e-47 |
| Msa0136330 | Msa0179040 | 0.988176 | 5.291077e-173 | -8.615850e-47 |
| Msa0168380 | Msa0179040 | 0.819625 | 1.052747e-52 | -8.615850e-47 |
| Msa0179040 | Msa0192050 | 0.812070 | 5.100576e-51 | -8.615850e-47 |
| Msa0179040 | Msa0385030 | 0.802759 | 4.817762e-49 | -8.615850e-47 |
| Msa0179040 | Msa0416210 | 0.847049 | 1.478072e-59 | -8.615850e-47 |
| Msa0179040 | Msa0433630 | 0.859979 | 2.843401e-63 | -8.615850e-47 |
| Msa0179040 | Msa0477480 | 0.808279 | 3.349273e-50 | -8.615850e-47 |
| Msa0179040 | Msa0479480 | 0.805588 | 1.241770e-49 | -8.615850e-47 |
| Msa0179040 | Msa0521510 | 0.859751 | 3.329400e-63 | -8.615850e-47 |
| Msa0179040 | Msa0521530 | 0.851005 | 1.175803e-60 | -8.615850e-47 |
| Msa0179040 | Msa0572360 | 0.817049 | 4.034413e-52 | -8.615850e-47 |
| Msa0179040 | Msa0572830 | 0.816445 | 5.510892e-52 | -8.615850e-47 |
| Msa0179040 | Msa0618990 | 0.802223 | 6.211670e-49 | -8.615850e-47 |
| Msa0179040 | Msa0689830 | 0.836706 | 7.998364e-57 | -8.615850e-47 |
| Msa0179040 | Msa0705180 | 0.803323 | 3.683017e-49 | -8.615850e-47 |
| Msa0179040 | Msa0707260 | 0.824150 | 9.434698e-54 | -8.615850e-47 |
| Msa0179040 | Msa0767280 | 0.826723 | 2.319875e-54 | -8.615850e-47 |
| Msa0179040 | Msa0846900 | 0.852195 | 5.411846e-61 | -8.615850e-47 |
| Msa0179040 | Msa0926310 | 0.821110 | 4.806695e-53 | -8.615850e-47 |
| Msa0179040 | Msa1000780 | 0.821765 | 3.391992e-53 | -8.615850e-47 |
| Msa0179040 | Msa1021560 | 0.815063 | 1.120279e-51 | -8.615850e-47 |
| Msa0179040 | Msa1124210 | 0.815338 | 9.730637e-52 | -8.615850e-47 |
| Msa0179040 | Msa1148930 | 0.804560 | 2.036837e-49 | -8.615850e-47 |
| Msa0179040 | Msa1220580 | 0.800823 | 1.202661e-48 | -8.615850e-47 |
| Msa0179040 | Msa1282300 | 0.806304 | 8.778057e-50 | -8.615850e-47 |
| Msa0179040 | Msa1339230 | 0.826590 | 2.495175e-54 | -8.615850e-47 |
| Msa0179040 | Msa1393560 | 0.800466 | 1.422553e-48 | -8.615850e-47 |
| Msa0179040 | Msa1399190 | 0.802398 | 5.718867e-49 | -8.615850e-47 |
| Msa0179040 | Msa1420830 | 0.801082 | 1.064702e-48 | -8.615850e-47 |
| Msa0179040 | Msa1463430 | 0.989688 | 3.310768e-179 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179040 | MtrunA17_Chr1g0207611 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 2.02e-60 | 179 |
| Msa0179040 | MtrunA17_Chr1g0152851 | 64.835 | 91 | 31 | 1 | 1 | 90 | 1 | 91 | 2.74e-30 | 102 |
| Msa0179040 | MtrunA17_Chr3g0134511 | 67.692 | 65 | 21 | 0 | 26 | 90 | 21 | 85 | 4.01e-26 | 92.0 |
| Msa0179040 | MtrunA17_Chr5g0415001 | 45.161 | 93 | 47 | 2 | 1 | 90 | 1 | 92 | 9.31e-20 | 76.3 |
| Msa0179040 | MtrunA17_Chr5g0415091 | 59.016 | 61 | 25 | 0 | 30 | 90 | 28 | 88 | 1.31e-19 | 75.9 |
| Msa0179040 | MtrunA17_Chr5g0415111 | 42.683 | 82 | 45 | 1 | 9 | 90 | 4 | 83 | 2.30e-17 | 69.7 |
| Msa0179040 | MtrunA17_Chr5g0415051 | 47.761 | 67 | 35 | 0 | 24 | 90 | 5 | 71 | 3.51e-17 | 68.9 |
| Msa0179040 | MtrunA17_Chr3g0078781 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.78e-16 | 66.6 |
| Msa0179040 | MtrunA17_Chr5g0446671 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.87e-16 | 66.6 |
| Msa0179040 | MtrunA17_Chr6g0453241 | 34.951 | 103 | 48 | 2 | 7 | 90 | 5 | 107 | 5.95e-15 | 64.3 |
| Msa0179040 | MtrunA17_Chr1g0200531 | 37.500 | 96 | 53 | 1 | 2 | 90 | 5 | 100 | 1.15e-14 | 63.5 |
| Msa0179040 | MtrunA17_Chr1g0156601 | 35.354 | 99 | 51 | 1 | 5 | 90 | 3 | 101 | 1.79e-14 | 63.2 |
| Msa0179040 | MtrunA17_Chr7g0217311 | 46.774 | 62 | 33 | 0 | 29 | 90 | 48 | 109 | 2.01e-14 | 63.2 |
| Msa0179040 | MtrunA17_Chr5g0434631 | 41.558 | 77 | 41 | 1 | 18 | 90 | 20 | 96 | 3.19e-14 | 62.4 |
| Msa0179040 | MtrunA17_Chr3g0092361 | 33.696 | 92 | 46 | 1 | 14 | 90 | 12 | 103 | 3.31e-14 | 62.4 |
| Msa0179040 | MtrunA17_Chr3g0142671 | 32.653 | 98 | 51 | 1 | 8 | 90 | 6 | 103 | 1.46e-13 | 60.8 |
| Msa0179040 | MtrunA17_Chr7g0256821 | 42.857 | 63 | 36 | 0 | 28 | 90 | 58 | 120 | 1.67e-13 | 60.8 |
| Msa0179040 | MtrunA17_Chr8g0364311 | 45.902 | 61 | 32 | 1 | 31 | 90 | 52 | 112 | 1.71e-12 | 58.2 |
| Msa0179040 | MtrunA17_Chr1g0156621 | 40.000 | 75 | 40 | 1 | 21 | 90 | 26 | 100 | 2.84e-12 | 57.4 |
| Msa0179040 | MtrunA17_Chr6g0451481 | 47.541 | 61 | 31 | 1 | 31 | 90 | 159 | 219 | 3.04e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179040 | AT5G59845.1 | 60.440 | 91 | 33 | 2 | 1 | 90 | 1 | 89 | 3.97e-28 | 97.8 |
| Msa0179040 | AT2G39540.1 | 54.444 | 90 | 38 | 1 | 1 | 90 | 1 | 87 | 1.52e-26 | 93.6 |
| Msa0179040 | AT2G14900.1 | 69.492 | 59 | 18 | 0 | 32 | 90 | 50 | 108 | 4.46e-26 | 93.2 |
| Msa0179040 | AT1G10588.1 | 56.180 | 89 | 36 | 2 | 3 | 90 | 4 | 90 | 1.51e-25 | 91.3 |
| Msa0179040 | AT1G10588.2 | 53.933 | 89 | 37 | 2 | 3 | 90 | 4 | 89 | 3.51e-24 | 87.8 |
| Msa0179040 | AT1G74670.1 | 36.634 | 101 | 53 | 1 | 1 | 90 | 1 | 101 | 2.03e-16 | 68.2 |
| Msa0179040 | AT5G15230.1 | 30.189 | 106 | 58 | 1 | 1 | 90 | 1 | 106 | 2.61e-13 | 60.5 |
| Msa0179040 | AT4G09600.1 | 40.244 | 82 | 40 | 2 | 18 | 90 | 18 | 99 | 8.04e-13 | 58.9 |
| Msa0179040 | AT5G15230.2 | 44.262 | 61 | 34 | 0 | 30 | 90 | 23 | 83 | 4.62e-12 | 56.6 |
| Msa0179040 | AT1G22690.1 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa0179040 | AT1G22690.2 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa0179040 | AT1G22690.3 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
Find 48 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTATGCTTCTCTTTCT+TGG | 0.113371 | 1_4:-66464599 | Msa0179040:CDS |
| TCACATTTATTGGTCTAAAA+TGG | 0.213982 | 1_4:+66464051 | None:intergenic |
| ACAATGTCTCTCACATTTAT+TGG | 0.225096 | 1_4:+66464041 | None:intergenic |
| CAGAGACAAGGTTAACAATA+AGG | 0.287897 | 1_4:-66464301 | Msa0179040:CDS |
| GCATGCAATGGTTTCAGTTC+TGG | 0.302247 | 1_4:+66464916 | None:intergenic |
| TGTGTTCCTTCTGGGACTTA+TGG | 0.316342 | 1_4:-66464348 | Msa0179040:CDS |
| GTGTTCCTTCTGGGACTTAT+GGG | 0.319469 | 1_4:-66464347 | Msa0179040:CDS |
| TAATTGACATCAAGGGCATT+TGG | 0.329972 | 1_4:+66464272 | None:intergenic |
| GAGTGCAAATGTGTTCCTTC+TGG | 0.347493 | 1_4:-66464357 | Msa0179040:CDS |
| CTTTAAAGATGGTGCCAACT+TGG | 0.375509 | 1_4:+66464761 | None:intergenic |
| AATTGACATCAAGGGCATTT+GGG | 0.384143 | 1_4:+66464273 | None:intergenic |
| CGAACACTTGCTGCTACAAT+TGG | 0.398537 | 1_4:+66464443 | None:intergenic |
| TATGTGATACAATAGAAAAT+AGG | 0.402948 | 1_4:+66464850 | None:intergenic |
| AGGTGGAGTCGGTGTGTTGT+AGG | 0.412194 | 1_4:+66464870 | None:intergenic |
| CTAAAGCAGGGGTTCAAGAT+AGG | 0.424996 | 1_4:-66464410 | Msa0179040:CDS |
| GGAGCTAGCCATTGCATATG+AGG | 0.425249 | 1_4:-66464578 | Msa0179040:CDS |
| AATGATAGGAATGCGCTAGA+AGG | 0.441151 | 1_4:-66464960 | None:intergenic |
| TATTGATGAATCTTTAAAGA+TGG | 0.449882 | 1_4:+66464750 | None:intergenic |
| GAGTTCACTAAGATGGTTAG+TGG | 0.458624 | 1_4:-66464205 | Msa0179040:three_prime_UTR |
| AGAGACAAGGTTAACAATAA+GGG | 0.465278 | 1_4:-66464300 | Msa0179040:CDS |
| TTTGTTAGTAATTGACATCA+AGG | 0.467943 | 1_4:+66464264 | None:intergenic |
| AGAAAGAGAAGCATAGAAGA+AGG | 0.472112 | 1_4:+66464602 | None:intergenic |
| ATCTAACACCCGACAAACAT+TGG | 0.482241 | 1_4:+66464118 | None:intergenic |
| TTAGCGATTTCTCAGTATGT+TGG | 0.488280 | 1_4:-66464164 | Msa0179040:three_prime_UTR |
| AGTAAACACACACGCTCGCT+TGG | 0.489816 | 1_4:+66464239 | None:intergenic |
| TTTAAAGATGGTGCCAACTT+GGG | 0.492479 | 1_4:+66464762 | None:intergenic |
| AGTGCAAATGTGTTCCTTCT+GGG | 0.495711 | 1_4:-66464356 | Msa0179040:CDS |
| TTGTGATAGCATTAGCAAGT+AGG | 0.508973 | 1_4:+66464714 | None:intergenic |
| GTCGGTGTGTTGTAGGACTA+AGG | 0.510822 | 1_4:+66464877 | None:intergenic |
| GAAAGAGAAGCATAGAAGAA+GGG | 0.513355 | 1_4:+66464603 | None:intergenic |
| CAATTGTAGCAGCAAGTGTT+CGG | 0.519914 | 1_4:-66464442 | Msa0179040:CDS |
| TCGGACAGATGCTCTAAAGC+AGG | 0.531159 | 1_4:-66464423 | Msa0179040:CDS |
| CAATAGAAAATAGGTGGAGT+CGG | 0.555914 | 1_4:+66464859 | None:intergenic |
| TTAGTGGTGCTACCTGTGTA+AGG | 0.562851 | 1_4:-66464189 | Msa0179040:three_prime_UTR |
| CGGACAGATGCTCTAAAGCA+GGG | 0.574198 | 1_4:-66464422 | Msa0179040:CDS |
| GTGATACAATAGAAAATAGG+TGG | 0.581085 | 1_4:+66464853 | None:intergenic |
| GAATGCGCTAGAAGGATTCG+TGG | 0.581723 | 1_4:-66464952 | None:intergenic |
| TTAACCTTGTCTCTGTAGCA+AGG | 0.582422 | 1_4:+66464309 | None:intergenic |
| TTGTTAGTAATTGACATCAA+GGG | 0.585883 | 1_4:+66464265 | None:intergenic |
| GACATTGAGACAGCATGCAA+TGG | 0.589121 | 1_4:+66464904 | None:intergenic |
| ACATGAATCCTCATATGCAA+TGG | 0.604589 | 1_4:+66464570 | None:intergenic |
| AATAGCAACATGGTGAAGAG+AGG | 0.630987 | 1_4:+66464631 | None:intergenic |
| GCGCTAGAAGGATTCGTGGG+TGG | 0.656000 | 1_4:-66464948 | Msa0179040:five_prime_UTR |
| TTGTTCCCATAAGTCCCAGA+AGG | 0.664123 | 1_4:+66464342 | None:intergenic |
| ATGTCCTTGCTACAGAGACA+AGG | 0.668753 | 1_4:-66464313 | Msa0179040:CDS |
| GGACAGATGCTCTAAAGCAG+GGG | 0.697192 | 1_4:-66464421 | Msa0179040:CDS |
| AAATCGCTAACACCTTACAC+AGG | 0.707359 | 1_4:+66464177 | None:intergenic |
| AAGGGAACAGAATAGCAACA+TGG | 0.736288 | 1_4:+66464621 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTGTTATTAATTTTA+TGG | - | chr1_4:66464911-66464930 | Msa0179040:five_prime_UTR | 10.0% |
| !!! | TTCTTTTGTTATTAATTTTA+TGG | - | chr1_4:66464911-66464930 | Msa0179040:five_prime_UTR | 10.0% |
| !!! | TAATTTGTCTATTATATTCT+TGG | - | chr1_4:66464378-66464397 | Msa0179040:CDS | 15.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | - | chr1_4:66464803-66464822 | Msa0179040:five_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | - | chr1_4:66464804-66464823 | Msa0179040:five_prime_UTR | 15.0% |
| !!! | TAATTTGTCTATTATATTCT+TGG | - | chr1_4:66464378-66464397 | Msa0179040:CDS | 15.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | - | chr1_4:66464803-66464822 | Msa0179040:five_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | - | chr1_4:66464804-66464823 | Msa0179040:five_prime_UTR | 15.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | + | chr1_4:66464038-66464057 | None:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | + | chr1_4:66464076-66464095 | None:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | + | chr1_4:66464138-66464157 | None:intergenic | 20.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | + | chr1_4:66464038-66464057 | None:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | + | chr1_4:66464076-66464095 | None:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | + | chr1_4:66464138-66464157 | None:intergenic | 20.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | - | chr1_4:66464416-66464435 | Msa0179040:CDS | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | + | chr1_4:66464623-66464642 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | + | chr1_4:66464624-66464643 | None:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+TGG | + | chr1_4:66464837-66464856 | None:intergenic | 25.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | - | chr1_4:66464416-66464435 | Msa0179040:CDS | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | + | chr1_4:66464623-66464642 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | + | chr1_4:66464624-66464643 | None:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+TGG | + | chr1_4:66464837-66464856 | None:intergenic | 25.0% |
| GTGATACAATAGAAAATAGG+TGG | + | chr1_4:66464035-66464054 | None:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | + | chr1_4:66464107-66464126 | None:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | - | chr1_4:66464110-66464129 | Msa0179040:three_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | - | chr1_4:66464347-66464366 | Msa0179040:CDS | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | + | chr1_4:66464354-66464373 | None:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | - | chr1_4:66464585-66464604 | Msa0179040:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | - | chr1_4:66464658-66464677 | Msa0179040:exon | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | - | chr1_4:66464758-66464777 | Msa0179040:five_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | + | chr1_4:66464847-66464866 | None:intergenic | 30.0% | |
| GTGATACAATAGAAAATAGG+TGG | + | chr1_4:66464035-66464054 | None:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | + | chr1_4:66464107-66464126 | None:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | - | chr1_4:66464110-66464129 | Msa0179040:three_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | - | chr1_4:66464347-66464366 | Msa0179040:CDS | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | + | chr1_4:66464354-66464373 | None:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | - | chr1_4:66464585-66464604 | Msa0179040:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | - | chr1_4:66464658-66464677 | Msa0179040:exon | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | - | chr1_4:66464758-66464777 | Msa0179040:five_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | + | chr1_4:66464847-66464866 | None:intergenic | 30.0% | |
| CAATAGAAAATAGGTGGAGT+CGG | + | chr1_4:66464029-66464048 | None:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | + | chr1_4:66464126-66464145 | None:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | + | chr1_4:66464174-66464193 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | + | chr1_4:66464285-66464304 | None:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | + | chr1_4:66464286-66464305 | None:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | - | chr1_4:66464286-66464305 | Msa0179040:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | + | chr1_4:66464318-66464337 | None:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | + | chr1_4:66464426-66464445 | None:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | - | chr1_4:66464584-66464603 | Msa0179040:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | + | chr1_4:66464615-66464634 | None:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | + | chr1_4:66464616-66464635 | None:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | - | chr1_4:66464673-66464692 | Msa0179040:five_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | - | chr1_4:66464721-66464740 | Msa0179040:five_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | - | chr1_4:66464759-66464778 | Msa0179040:five_prime_UTR | 35.0% |
| CAATAGAAAATAGGTGGAGT+CGG | + | chr1_4:66464029-66464048 | None:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | + | chr1_4:66464126-66464145 | None:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | + | chr1_4:66464174-66464193 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | + | chr1_4:66464285-66464304 | None:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | + | chr1_4:66464286-66464305 | None:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | - | chr1_4:66464286-66464305 | Msa0179040:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | + | chr1_4:66464318-66464337 | None:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | + | chr1_4:66464426-66464445 | None:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | - | chr1_4:66464584-66464603 | Msa0179040:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | + | chr1_4:66464615-66464634 | None:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | + | chr1_4:66464616-66464635 | None:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | - | chr1_4:66464673-66464692 | Msa0179040:five_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | - | chr1_4:66464721-66464740 | Msa0179040:five_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | - | chr1_4:66464759-66464778 | Msa0179040:five_prime_UTR | 35.0% |
| ! | CTTTAAAGATGGTGCCAACT+TGG | + | chr1_4:66464127-66464146 | None:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | + | chr1_4:66464257-66464276 | None:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | + | chr1_4:66464267-66464286 | None:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | - | chr1_4:66464443-66464462 | Msa0179040:CDS | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | - | chr1_4:66464529-66464548 | Msa0179040:intron | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | + | chr1_4:66464579-66464598 | None:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | - | chr1_4:66464680-66464699 | Msa0179040:five_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | + | chr1_4:66464711-66464730 | None:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | + | chr1_4:66464770-66464789 | None:intergenic | 40.0% | |
| ! | CTTTAAAGATGGTGCCAACT+TGG | + | chr1_4:66464127-66464146 | None:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | + | chr1_4:66464257-66464276 | None:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | + | chr1_4:66464267-66464286 | None:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | - | chr1_4:66464443-66464462 | Msa0179040:CDS | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | - | chr1_4:66464529-66464548 | Msa0179040:intron | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | + | chr1_4:66464579-66464598 | None:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | - | chr1_4:66464680-66464699 | Msa0179040:five_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | + | chr1_4:66464711-66464730 | None:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | + | chr1_4:66464770-66464789 | None:intergenic | 40.0% | |
| GCATGCAATGGTTTCAGTTC+TGG | + | chr1_4:66463972-66463991 | None:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | + | chr1_4:66463984-66464003 | None:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | + | chr1_4:66464445-66464464 | None:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | - | chr1_4:66464475-66464494 | Msa0179040:intron | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | - | chr1_4:66464528-66464547 | Msa0179040:intron | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | - | chr1_4:66464537-66464556 | Msa0179040:intron | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | - | chr1_4:66464538-66464557 | Msa0179040:intron | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | + | chr1_4:66464546-66464565 | None:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | - | chr1_4:66464572-66464591 | Msa0179040:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | - | chr1_4:66464696-66464715 | Msa0179040:five_prime_UTR | 45.0% |
| GCATGCAATGGTTTCAGTTC+TGG | + | chr1_4:66463972-66463991 | None:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | + | chr1_4:66463984-66464003 | None:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | + | chr1_4:66464445-66464464 | None:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | - | chr1_4:66464475-66464494 | Msa0179040:intron | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | - | chr1_4:66464528-66464547 | Msa0179040:intron | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | - | chr1_4:66464537-66464556 | Msa0179040:intron | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | - | chr1_4:66464538-66464557 | Msa0179040:intron | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | + | chr1_4:66464546-66464565 | None:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | - | chr1_4:66464572-66464591 | Msa0179040:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | - | chr1_4:66464696-66464715 | Msa0179040:five_prime_UTR | 45.0% |
| GTCGGTGTGTTGTAGGACTA+AGG | + | chr1_4:66464011-66464030 | None:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | - | chr1_4:66464307-66464326 | Msa0179040:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | - | chr1_4:66464462-66464481 | Msa0179040:intron | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | - | chr1_4:66464463-66464482 | Msa0179040:intron | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | - | chr1_4:66464464-66464483 | Msa0179040:intron | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | + | chr1_4:66464649-66464668 | None:intergenic | 50.0% | |
| GTCGGTGTGTTGTAGGACTA+AGG | + | chr1_4:66464011-66464030 | None:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | - | chr1_4:66464307-66464326 | Msa0179040:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | - | chr1_4:66464462-66464481 | Msa0179040:intron | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | - | chr1_4:66464463-66464482 | Msa0179040:intron | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | - | chr1_4:66464464-66464483 | Msa0179040:intron | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | + | chr1_4:66464649-66464668 | None:intergenic | 50.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | + | chr1_4:66464018-66464037 | None:intergenic | 55.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | + | chr1_4:66464018-66464037 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66463939 | 66464968 | 66463939 | ID=Msa0179040;Name=Msa0179040 |
| chr1_4 | mRNA | 66463939 | 66464968 | 66463939 | ID=Msa0179040-mRNA-1;Parent=Msa0179040;Name=Msa0179040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=309|1|1|1|1|1|2|342|90 |
| chr1_4 | exon | 66463939 | 66464465 | 66463939 | ID=Msa0179040-mRNA-1:exon:21742;Parent=Msa0179040-mRNA-1 |
| chr1_4 | exon | 66464572 | 66464968 | 66464572 | ID=Msa0179040-mRNA-1:exon:21741;Parent=Msa0179040-mRNA-1 |
| chr1_4 | five_prime_UTR | 66464660 | 66464968 | 66464660 | ID=Msa0179040-mRNA-1:five_prime_utr;Parent=Msa0179040-mRNA-1 |
| chr1_4 | CDS | 66464572 | 66464659 | 66464572 | ID=Msa0179040-mRNA-1:cds;Parent=Msa0179040-mRNA-1 |
| chr1_4 | CDS | 66464281 | 66464465 | 66464281 | ID=Msa0179040-mRNA-1:cds;Parent=Msa0179040-mRNA-1 |
| chr1_4 | three_prime_UTR | 66463939 | 66464280 | 66463939 | ID=Msa0179040-mRNA-1:three_prime_utr;Parent=Msa0179040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
