Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136330 | XP_013470003.1 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 2.20e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136330 | sp|Q948Z4|SNAK1_SOLTU | 71.233 | 73 | 19 | 1 | 18 | 90 | 18 | 88 | 5.53e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136330 | A0A072VQU0 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 1.05e-56 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0136330 | 0.821363 | 4.202466e-53 | -8.615850e-47 |
| Msa0033610 | Msa0136330 | 0.831032 | 2.100970e-55 | -8.615850e-47 |
| Msa0033640 | Msa0136330 | 0.803312 | 3.701562e-49 | -8.615850e-47 |
| Msa0041910 | Msa0136330 | 0.979254 | 1.442327e-147 | -8.615850e-47 |
| Msa0050530 | Msa0136330 | 0.847048 | 1.479538e-59 | -8.615850e-47 |
| Msa0100600 | Msa0136330 | 0.839394 | 1.626405e-57 | -8.615850e-47 |
| Msa0100890 | Msa0136330 | 0.832644 | 8.405657e-56 | -8.615850e-47 |
| Msa0136330 | Msa0168380 | 0.821704 | 3.504763e-53 | -8.615850e-47 |
| Msa0136330 | Msa0179040 | 0.988176 | 5.291077e-173 | -8.615850e-47 |
| Msa0136330 | Msa0192050 | 0.811003 | 8.698397e-51 | -8.615850e-47 |
| Msa0136330 | Msa0416210 | 0.839444 | 1.578923e-57 | -8.615850e-47 |
| Msa0136330 | Msa0433630 | 0.859502 | 3.957245e-63 | -8.615850e-47 |
| Msa0136330 | Msa0477480 | 0.809478 | 1.855530e-50 | -8.615850e-47 |
| Msa0136330 | Msa0479480 | 0.800328 | 1.517842e-48 | -8.615850e-47 |
| Msa0136330 | Msa0521510 | 0.860171 | 2.487957e-63 | -8.615850e-47 |
| Msa0136330 | Msa0521530 | 0.852857 | 3.504927e-61 | -8.615850e-47 |
| Msa0136330 | Msa0572360 | 0.825551 | 4.408492e-54 | -8.615850e-47 |
| Msa0136330 | Msa0572830 | 0.816849 | 4.471992e-52 | -8.615850e-47 |
| Msa0136330 | Msa0689830 | 0.837071 | 6.453541e-57 | -8.615850e-47 |
| Msa0136330 | Msa0705140 | 0.807905 | 4.023424e-50 | -8.615850e-47 |
| Msa0136330 | Msa0705180 | 0.803455 | 3.457348e-49 | -8.615850e-47 |
| Msa0136330 | Msa0707260 | 0.827341 | 1.650709e-54 | -8.615850e-47 |
| Msa0136330 | Msa0751720 | 0.806678 | 7.318910e-50 | -8.615850e-47 |
| Msa0136330 | Msa0767280 | 0.827972 | 1.164090e-54 | -8.615850e-47 |
| Msa0136330 | Msa0846900 | 0.850839 | 1.309686e-60 | -8.615850e-47 |
| Msa0136330 | Msa0926310 | 0.813812 | 2.117805e-51 | -8.615850e-47 |
| Msa0136330 | Msa1000780 | 0.814139 | 1.793788e-51 | -8.615850e-47 |
| Msa0136330 | Msa1021560 | 0.820865 | 5.473271e-53 | -8.615850e-47 |
| Msa0136330 | Msa1105580 | 0.802846 | 4.622057e-49 | -8.615850e-47 |
| Msa0136330 | Msa1124210 | 0.817709 | 2.864360e-52 | -8.615850e-47 |
| Msa0136330 | Msa1148930 | 0.805858 | 1.089496e-49 | -8.615850e-47 |
| Msa0136330 | Msa1282300 | 0.809905 | 1.501795e-50 | -8.615850e-47 |
| Msa0136330 | Msa1339230 | 0.830186 | 3.383152e-55 | -8.615850e-47 |
| Msa0136330 | Msa1379940 | 0.801897 | 7.249180e-49 | -8.615850e-47 |
| Msa0136330 | Msa1393560 | 0.800767 | 1.234993e-48 | -8.615850e-47 |
| Msa0136330 | Msa1420830 | 0.805536 | 1.273242e-49 | -8.615850e-47 |
| Msa0136330 | Msa1463430 | 0.998686 | 5.873733e-273 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136330 | MtrunA17_Chr1g0207611 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 2.02e-60 | 179 |
| Msa0136330 | MtrunA17_Chr1g0152851 | 64.835 | 91 | 31 | 1 | 1 | 90 | 1 | 91 | 2.74e-30 | 102 |
| Msa0136330 | MtrunA17_Chr3g0134511 | 67.692 | 65 | 21 | 0 | 26 | 90 | 21 | 85 | 4.01e-26 | 92.0 |
| Msa0136330 | MtrunA17_Chr5g0415001 | 45.161 | 93 | 47 | 2 | 1 | 90 | 1 | 92 | 9.31e-20 | 76.3 |
| Msa0136330 | MtrunA17_Chr5g0415091 | 59.016 | 61 | 25 | 0 | 30 | 90 | 28 | 88 | 1.31e-19 | 75.9 |
| Msa0136330 | MtrunA17_Chr5g0415111 | 42.683 | 82 | 45 | 1 | 9 | 90 | 4 | 83 | 2.30e-17 | 69.7 |
| Msa0136330 | MtrunA17_Chr5g0415051 | 47.761 | 67 | 35 | 0 | 24 | 90 | 5 | 71 | 3.51e-17 | 68.9 |
| Msa0136330 | MtrunA17_Chr3g0078781 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.78e-16 | 66.6 |
| Msa0136330 | MtrunA17_Chr5g0446671 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.87e-16 | 66.6 |
| Msa0136330 | MtrunA17_Chr6g0453241 | 34.951 | 103 | 48 | 2 | 7 | 90 | 5 | 107 | 5.95e-15 | 64.3 |
| Msa0136330 | MtrunA17_Chr1g0200531 | 37.500 | 96 | 53 | 1 | 2 | 90 | 5 | 100 | 1.15e-14 | 63.5 |
| Msa0136330 | MtrunA17_Chr1g0156601 | 35.354 | 99 | 51 | 1 | 5 | 90 | 3 | 101 | 1.79e-14 | 63.2 |
| Msa0136330 | MtrunA17_Chr7g0217311 | 46.774 | 62 | 33 | 0 | 29 | 90 | 48 | 109 | 2.01e-14 | 63.2 |
| Msa0136330 | MtrunA17_Chr5g0434631 | 41.558 | 77 | 41 | 1 | 18 | 90 | 20 | 96 | 3.19e-14 | 62.4 |
| Msa0136330 | MtrunA17_Chr3g0092361 | 33.696 | 92 | 46 | 1 | 14 | 90 | 12 | 103 | 3.31e-14 | 62.4 |
| Msa0136330 | MtrunA17_Chr3g0142671 | 32.653 | 98 | 51 | 1 | 8 | 90 | 6 | 103 | 1.46e-13 | 60.8 |
| Msa0136330 | MtrunA17_Chr7g0256821 | 42.857 | 63 | 36 | 0 | 28 | 90 | 58 | 120 | 1.67e-13 | 60.8 |
| Msa0136330 | MtrunA17_Chr8g0364311 | 45.902 | 61 | 32 | 1 | 31 | 90 | 52 | 112 | 1.71e-12 | 58.2 |
| Msa0136330 | MtrunA17_Chr1g0156621 | 40.000 | 75 | 40 | 1 | 21 | 90 | 26 | 100 | 2.84e-12 | 57.4 |
| Msa0136330 | MtrunA17_Chr6g0451481 | 47.541 | 61 | 31 | 1 | 31 | 90 | 159 | 219 | 3.04e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136330 | AT5G59845.1 | 60.440 | 91 | 33 | 2 | 1 | 90 | 1 | 89 | 3.97e-28 | 97.8 |
| Msa0136330 | AT2G39540.1 | 54.444 | 90 | 38 | 1 | 1 | 90 | 1 | 87 | 1.52e-26 | 93.6 |
| Msa0136330 | AT2G14900.1 | 69.492 | 59 | 18 | 0 | 32 | 90 | 50 | 108 | 4.46e-26 | 93.2 |
| Msa0136330 | AT1G10588.1 | 56.180 | 89 | 36 | 2 | 3 | 90 | 4 | 90 | 1.51e-25 | 91.3 |
| Msa0136330 | AT1G10588.2 | 53.933 | 89 | 37 | 2 | 3 | 90 | 4 | 89 | 3.51e-24 | 87.8 |
| Msa0136330 | AT1G74670.1 | 36.634 | 101 | 53 | 1 | 1 | 90 | 1 | 101 | 2.03e-16 | 68.2 |
| Msa0136330 | AT5G15230.1 | 30.189 | 106 | 58 | 1 | 1 | 90 | 1 | 106 | 2.61e-13 | 60.5 |
| Msa0136330 | AT4G09600.1 | 40.244 | 82 | 40 | 2 | 18 | 90 | 18 | 99 | 8.04e-13 | 58.9 |
| Msa0136330 | AT5G15230.2 | 44.262 | 61 | 34 | 0 | 30 | 90 | 23 | 83 | 4.62e-12 | 56.6 |
| Msa0136330 | AT1G22690.1 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa0136330 | AT1G22690.2 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa0136330 | AT1G22690.3 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
Find 48 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTATGCTTCTCTTTCT+TGG | 0.113371 | 1_3:-68165553 | Msa0136330:CDS |
| ACAATGTCTCTCACATTTAT+TGG | 0.225096 | 1_3:+68164984 | None:intergenic |
| CAGAGACAAGGTTAACAATA+AGG | 0.287897 | 1_3:-68165244 | Msa0136330:CDS |
| GCATGCAATGGTTTCAGTTC+TGG | 0.302247 | 1_3:+68165870 | None:intergenic |
| TGTGTTCCTTCTGGGACTTA+TGG | 0.316342 | 1_3:-68165291 | Msa0136330:CDS |
| GTGTTCCTTCTGGGACTTAT+GGG | 0.319469 | 1_3:-68165290 | Msa0136330:CDS |
| TAATTGACATCAAGGGCATT+TGG | 0.329972 | 1_3:+68165215 | None:intergenic |
| GAGTGCAAATGTGTTCCTTC+TGG | 0.347493 | 1_3:-68165300 | Msa0136330:CDS |
| CTTTAAAGATGGTGCCAACT+TGG | 0.375509 | 1_3:+68165715 | None:intergenic |
| AATTGACATCAAGGGCATTT+GGG | 0.384143 | 1_3:+68165216 | None:intergenic |
| CGAACACTTGCTGCTACAAT+TGG | 0.398537 | 1_3:+68165386 | None:intergenic |
| TATGTGATACAATAGAAAAT+AGG | 0.402948 | 1_3:+68165804 | None:intergenic |
| AGGTGGAGTCGGTGTGTTGT+AGG | 0.412194 | 1_3:+68165824 | None:intergenic |
| CTAAAGCAGGGGTTCAAGAT+AGG | 0.424996 | 1_3:-68165353 | Msa0136330:CDS |
| GGAGCTAGCCATTGCATATG+AGG | 0.425249 | 1_3:-68165532 | Msa0136330:CDS |
| AATGATAGGAATGCGCTAGA+AGG | 0.441151 | 1_3:-68165914 | None:intergenic |
| TATTGATGAATCTTTAAAGA+TGG | 0.449882 | 1_3:+68165704 | None:intergenic |
| TCACATTTATTGGTCTAAAA+CGG | 0.456902 | 1_3:+68164994 | None:intergenic |
| GAGTTCACTAAGATGGTTAG+TGG | 0.458624 | 1_3:-68165148 | Msa0136330:three_prime_UTR |
| AGAGACAAGGTTAACAATAA+GGG | 0.465278 | 1_3:-68165243 | Msa0136330:CDS |
| TTTGTTAGTAATTGACATCA+AGG | 0.467943 | 1_3:+68165207 | None:intergenic |
| AGAAAGAGAAGCATAGAAGA+AGG | 0.472112 | 1_3:+68165556 | None:intergenic |
| ATCTAACACCCGACAAACAT+TGG | 0.482241 | 1_3:+68165061 | None:intergenic |
| TTAGCGATTTCTCAGTATGT+TGG | 0.488280 | 1_3:-68165107 | Msa0136330:three_prime_UTR |
| AGTAAACACACACGCTCGCT+TGG | 0.489816 | 1_3:+68165182 | None:intergenic |
| TTTAAAGATGGTGCCAACTT+GGG | 0.492479 | 1_3:+68165716 | None:intergenic |
| AGTGCAAATGTGTTCCTTCT+GGG | 0.495711 | 1_3:-68165299 | Msa0136330:CDS |
| TTGTGATAGCATTAGCAAGT+AGG | 0.508973 | 1_3:+68165668 | None:intergenic |
| GTCGGTGTGTTGTAGGACTA+AGG | 0.510822 | 1_3:+68165831 | None:intergenic |
| GAAAGAGAAGCATAGAAGAA+GGG | 0.513355 | 1_3:+68165557 | None:intergenic |
| CAATTGTAGCAGCAAGTGTT+CGG | 0.519914 | 1_3:-68165385 | Msa0136330:CDS |
| TCGGACAGATGCTCTAAAGC+AGG | 0.531159 | 1_3:-68165366 | Msa0136330:CDS |
| CAATAGAAAATAGGTGGAGT+CGG | 0.555914 | 1_3:+68165813 | None:intergenic |
| TTAGTGGTGCTACCTGTGTA+AGG | 0.562851 | 1_3:-68165132 | Msa0136330:three_prime_UTR |
| CGGACAGATGCTCTAAAGCA+GGG | 0.574198 | 1_3:-68165365 | Msa0136330:CDS |
| GTGATACAATAGAAAATAGG+TGG | 0.581085 | 1_3:+68165807 | None:intergenic |
| GAATGCGCTAGAAGGATTCG+TGG | 0.581723 | 1_3:-68165906 | None:intergenic |
| TTAACCTTGTCTCTGTAGCA+AGG | 0.582422 | 1_3:+68165252 | None:intergenic |
| TTGTTAGTAATTGACATCAA+GGG | 0.585883 | 1_3:+68165208 | None:intergenic |
| GACATTGAGACAGCATGCAA+TGG | 0.589121 | 1_3:+68165858 | None:intergenic |
| ACATGAATCCTCATATGCAA+TGG | 0.604589 | 1_3:+68165524 | None:intergenic |
| AATAGCAACATGGTGAAGAG+AGG | 0.630987 | 1_3:+68165585 | None:intergenic |
| GCGCTAGAAGGATTCGTGGG+TGG | 0.656000 | 1_3:-68165902 | Msa0136330:five_prime_UTR |
| TTGTTCCCATAAGTCCCAGA+AGG | 0.664123 | 1_3:+68165285 | None:intergenic |
| ATGTCCTTGCTACAGAGACA+AGG | 0.668753 | 1_3:-68165256 | Msa0136330:CDS |
| GGACAGATGCTCTAAAGCAG+GGG | 0.697192 | 1_3:-68165364 | Msa0136330:CDS |
| AAATCGCTAACACCTTACAC+AGG | 0.707359 | 1_3:+68165120 | None:intergenic |
| AAGGGAACAGAATAGCAACA+TGG | 0.736288 | 1_3:+68165575 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTCTTTTACTTTTTT+TGG | - | chr1_3:68165336-68165355 | Msa0136330:CDS | 10.0% |
| !!! | TTCTTTTGTTATTAATTTTA+TGG | - | chr1_3:68165869-68165888 | Msa0136330:five_prime_UTR | 10.0% |
| !!! | TTATATTCTTTTACTTTTTT+TGG | - | chr1_3:68165336-68165355 | Msa0136330:CDS | 10.0% |
| !!! | TTCTTTTGTTATTAATTTTA+TGG | - | chr1_3:68165869-68165888 | Msa0136330:five_prime_UTR | 10.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | - | chr1_3:68165761-68165780 | Msa0136330:five_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | - | chr1_3:68165762-68165781 | Msa0136330:five_prime_UTR | 15.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | - | chr1_3:68165761-68165780 | Msa0136330:five_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | - | chr1_3:68165762-68165781 | Msa0136330:five_prime_UTR | 15.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | + | chr1_3:68164985-68165004 | None:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | + | chr1_3:68165023-68165042 | None:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | + | chr1_3:68165085-68165104 | None:intergenic | 20.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | + | chr1_3:68164985-68165004 | None:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | + | chr1_3:68165023-68165042 | None:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | + | chr1_3:68165085-68165104 | None:intergenic | 20.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | - | chr1_3:68165374-68165393 | Msa0136330:CDS | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | + | chr1_3:68165581-68165600 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | + | chr1_3:68165582-68165601 | None:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+CGG | + | chr1_3:68165795-68165814 | None:intergenic | 25.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | - | chr1_3:68165374-68165393 | Msa0136330:CDS | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | + | chr1_3:68165581-68165600 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | + | chr1_3:68165582-68165601 | None:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+CGG | + | chr1_3:68165795-68165814 | None:intergenic | 25.0% |
| GTGATACAATAGAAAATAGG+TGG | + | chr1_3:68164982-68165001 | None:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | + | chr1_3:68165054-68165073 | None:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | - | chr1_3:68165057-68165076 | Msa0136330:three_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | - | chr1_3:68165294-68165313 | Msa0136330:CDS | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | + | chr1_3:68165301-68165320 | None:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | - | chr1_3:68165543-68165562 | Msa0136330:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | - | chr1_3:68165616-68165635 | Msa0136330:five_prime_UTR | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | - | chr1_3:68165716-68165735 | Msa0136330:five_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | + | chr1_3:68165805-68165824 | None:intergenic | 30.0% | |
| GTGATACAATAGAAAATAGG+TGG | + | chr1_3:68164982-68165001 | None:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | + | chr1_3:68165054-68165073 | None:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | - | chr1_3:68165057-68165076 | Msa0136330:three_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | - | chr1_3:68165294-68165313 | Msa0136330:CDS | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | + | chr1_3:68165301-68165320 | None:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | - | chr1_3:68165543-68165562 | Msa0136330:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | - | chr1_3:68165616-68165635 | Msa0136330:five_prime_UTR | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | - | chr1_3:68165716-68165735 | Msa0136330:five_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | + | chr1_3:68165805-68165824 | None:intergenic | 30.0% | |
| CAATAGAAAATAGGTGGAGT+CGG | + | chr1_3:68164976-68164995 | None:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | + | chr1_3:68165073-68165092 | None:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | + | chr1_3:68165121-68165140 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | + | chr1_3:68165232-68165251 | None:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | + | chr1_3:68165233-68165252 | None:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | - | chr1_3:68165233-68165252 | Msa0136330:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | + | chr1_3:68165265-68165284 | None:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | + | chr1_3:68165384-68165403 | None:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | - | chr1_3:68165542-68165561 | Msa0136330:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | + | chr1_3:68165573-68165592 | None:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | + | chr1_3:68165574-68165593 | None:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | - | chr1_3:68165631-68165650 | Msa0136330:five_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | - | chr1_3:68165679-68165698 | Msa0136330:five_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | - | chr1_3:68165717-68165736 | Msa0136330:five_prime_UTR | 35.0% |
| CAATAGAAAATAGGTGGAGT+CGG | + | chr1_3:68164976-68164995 | None:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | + | chr1_3:68165073-68165092 | None:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | + | chr1_3:68165121-68165140 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | + | chr1_3:68165232-68165251 | None:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | + | chr1_3:68165233-68165252 | None:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | - | chr1_3:68165233-68165252 | Msa0136330:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | + | chr1_3:68165265-68165284 | None:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | + | chr1_3:68165384-68165403 | None:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | - | chr1_3:68165542-68165561 | Msa0136330:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | + | chr1_3:68165573-68165592 | None:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | + | chr1_3:68165574-68165593 | None:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | - | chr1_3:68165631-68165650 | Msa0136330:five_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | - | chr1_3:68165679-68165698 | Msa0136330:five_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | - | chr1_3:68165717-68165736 | Msa0136330:five_prime_UTR | 35.0% |
| ! | CTTTAAAGATGGTGCCAACT+TGG | + | chr1_3:68165074-68165093 | None:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | + | chr1_3:68165204-68165223 | None:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | + | chr1_3:68165214-68165233 | None:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | - | chr1_3:68165401-68165420 | Msa0136330:intron | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | - | chr1_3:68165487-68165506 | Msa0136330:intron | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | + | chr1_3:68165537-68165556 | None:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | - | chr1_3:68165638-68165657 | Msa0136330:five_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | + | chr1_3:68165669-68165688 | None:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | + | chr1_3:68165728-68165747 | None:intergenic | 40.0% | |
| ! | CTTTAAAGATGGTGCCAACT+TGG | + | chr1_3:68165074-68165093 | None:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | + | chr1_3:68165204-68165223 | None:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | + | chr1_3:68165214-68165233 | None:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | - | chr1_3:68165401-68165420 | Msa0136330:intron | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | - | chr1_3:68165487-68165506 | Msa0136330:intron | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | + | chr1_3:68165537-68165556 | None:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | - | chr1_3:68165638-68165657 | Msa0136330:five_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | + | chr1_3:68165669-68165688 | None:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | + | chr1_3:68165728-68165747 | None:intergenic | 40.0% | |
| GCATGCAATGGTTTCAGTTC+TGG | + | chr1_3:68164919-68164938 | None:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | + | chr1_3:68164931-68164950 | None:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | + | chr1_3:68165403-68165422 | None:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | - | chr1_3:68165433-68165452 | Msa0136330:intron | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | - | chr1_3:68165486-68165505 | Msa0136330:intron | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | - | chr1_3:68165495-68165514 | Msa0136330:intron | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | - | chr1_3:68165496-68165515 | Msa0136330:intron | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | + | chr1_3:68165504-68165523 | None:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | - | chr1_3:68165530-68165549 | Msa0136330:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | - | chr1_3:68165654-68165673 | Msa0136330:five_prime_UTR | 45.0% |
| GCATGCAATGGTTTCAGTTC+TGG | + | chr1_3:68164919-68164938 | None:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | + | chr1_3:68164931-68164950 | None:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | + | chr1_3:68165403-68165422 | None:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | - | chr1_3:68165433-68165452 | Msa0136330:intron | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | - | chr1_3:68165486-68165505 | Msa0136330:intron | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | - | chr1_3:68165495-68165514 | Msa0136330:intron | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | - | chr1_3:68165496-68165515 | Msa0136330:intron | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | + | chr1_3:68165504-68165523 | None:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | - | chr1_3:68165530-68165549 | Msa0136330:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | - | chr1_3:68165654-68165673 | Msa0136330:five_prime_UTR | 45.0% |
| GTCGGTGTGTTGTAGGACTA+AGG | + | chr1_3:68164958-68164977 | None:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | - | chr1_3:68165254-68165273 | Msa0136330:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | - | chr1_3:68165420-68165439 | Msa0136330:intron | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | - | chr1_3:68165421-68165440 | Msa0136330:intron | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | - | chr1_3:68165422-68165441 | Msa0136330:intron | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | + | chr1_3:68165607-68165626 | None:intergenic | 50.0% | |
| GTCGGTGTGTTGTAGGACTA+AGG | + | chr1_3:68164958-68164977 | None:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | - | chr1_3:68165254-68165273 | Msa0136330:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | - | chr1_3:68165420-68165439 | Msa0136330:intron | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | - | chr1_3:68165421-68165440 | Msa0136330:intron | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | - | chr1_3:68165422-68165441 | Msa0136330:intron | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | + | chr1_3:68165607-68165626 | None:intergenic | 50.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | + | chr1_3:68164965-68164984 | None:intergenic | 55.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | + | chr1_3:68164965-68164984 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 68164886 | 68165922 | 68164886 | ID=Msa0136330;Name=Msa0136330 |
| chr1_3 | mRNA | 68164886 | 68165922 | 68164886 | ID=Msa0136330-mRNA-1;Parent=Msa0136330;Name=Msa0136330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=309|1|1|1|1|1|2|338|90 |
| chr1_3 | exon | 68164886 | 68165408 | 68164886 | ID=Msa0136330-mRNA-1:exon:23520;Parent=Msa0136330-mRNA-1 |
| chr1_3 | exon | 68165526 | 68165922 | 68165526 | ID=Msa0136330-mRNA-1:exon:23519;Parent=Msa0136330-mRNA-1 |
| chr1_3 | five_prime_UTR | 68165614 | 68165922 | 68165614 | ID=Msa0136330-mRNA-1:five_prime_utr;Parent=Msa0136330-mRNA-1 |
| chr1_3 | CDS | 68165526 | 68165613 | 68165526 | ID=Msa0136330-mRNA-1:cds;Parent=Msa0136330-mRNA-1 |
| chr1_3 | CDS | 68165224 | 68165408 | 68165224 | ID=Msa0136330-mRNA-1:cds;Parent=Msa0136330-mRNA-1 |
| chr1_3 | three_prime_UTR | 68164886 | 68165223 | 68164886 | ID=Msa0136330-mRNA-1:three_prime_utr;Parent=Msa0136330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
