Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463430 | XP_013470003.1 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 2.20e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463430 | sp|Q948Z4|SNAK1_SOLTU | 71.233 | 73 | 19 | 1 | 18 | 90 | 18 | 88 | 5.53e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463430 | A0A072VQU0 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 1.05e-56 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa1463430 | 0.816909 | 4.337032e-52 | -8.615850e-47 |
| Msa0033610 | Msa1463430 | 0.830382 | 3.030997e-55 | -8.615850e-47 |
| Msa0033640 | Msa1463430 | 0.802811 | 4.698842e-49 | -8.615850e-47 |
| Msa0041910 | Msa1463430 | 0.979741 | 1.222564e-148 | -8.615850e-47 |
| Msa0050530 | Msa1463430 | 0.843034 | 1.795669e-58 | -8.615850e-47 |
| Msa0100600 | Msa1463430 | 0.836263 | 1.036528e-56 | -8.615850e-47 |
| Msa0100890 | Msa1463430 | 0.829022 | 6.495800e-55 | -8.615850e-47 |
| Msa1393560 | Msa1463430 | 0.801360 | 9.343040e-49 | -8.615850e-47 |
| Msa1420830 | Msa1463430 | 0.803783 | 2.956412e-49 | -8.615850e-47 |
| Msa0689830 | Msa1463430 | 0.833354 | 5.595439e-56 | -8.615850e-47 |
| Msa0705140 | Msa1463430 | 0.805028 | 1.626404e-49 | -8.615850e-47 |
| Msa0705180 | Msa1463430 | 0.801335 | 9.454050e-49 | -8.615850e-47 |
| Msa0707260 | Msa1463430 | 0.827674 | 1.372911e-54 | -8.615850e-47 |
| Msa0751720 | Msa1463430 | 0.802646 | 5.081644e-49 | -8.615850e-47 |
| Msa0767280 | Msa1463430 | 0.824282 | 8.783887e-54 | -8.615850e-47 |
| Msa0136330 | Msa1463430 | 0.998686 | 5.873733e-273 | -8.615850e-47 |
| Msa0168380 | Msa1463430 | 0.821005 | 5.082263e-53 | -8.615850e-47 |
| Msa0179040 | Msa1463430 | 0.989688 | 3.310768e-179 | -8.615850e-47 |
| Msa0192050 | Msa1463430 | 0.808919 | 2.444762e-50 | -8.615850e-47 |
| Msa1282300 | Msa1463430 | 0.807158 | 5.794258e-50 | -8.615850e-47 |
| Msa1339230 | Msa1463430 | 0.829367 | 5.355809e-55 | -8.615850e-47 |
| Msa0416210 | Msa1463430 | 0.838623 | 2.575570e-57 | -8.615850e-47 |
| Msa0433630 | Msa1463430 | 0.859282 | 4.606940e-63 | -8.615850e-47 |
| Msa0477480 | Msa1463430 | 0.808960 | 2.395491e-50 | -8.615850e-47 |
| Msa1000780 | Msa1463430 | 0.814864 | 1.240153e-51 | -8.615850e-47 |
| Msa1021560 | Msa1463430 | 0.815922 | 7.210809e-52 | -8.615850e-47 |
| Msa1124210 | Msa1463430 | 0.813441 | 2.555903e-51 | -8.615850e-47 |
| Msa1148930 | Msa1463430 | 0.800407 | 1.462005e-48 | -8.615850e-47 |
| Msa0521510 | Msa1463430 | 0.860572 | 1.880807e-63 | -8.615850e-47 |
| Msa0521530 | Msa1463430 | 0.852856 | 3.507694e-61 | -8.615850e-47 |
| Msa0572360 | Msa1463430 | 0.822089 | 2.853819e-53 | -8.615850e-47 |
| Msa0572830 | Msa1463430 | 0.816127 | 6.489012e-52 | -8.615850e-47 |
| Msa0846900 | Msa1463430 | 0.847407 | 1.179076e-59 | -8.615850e-47 |
| Msa0926310 | Msa1463430 | 0.812061 | 5.123522e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463430 | MtrunA17_Chr1g0207611 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 2.02e-60 | 179 |
| Msa1463430 | MtrunA17_Chr1g0152851 | 64.835 | 91 | 31 | 1 | 1 | 90 | 1 | 91 | 2.74e-30 | 102 |
| Msa1463430 | MtrunA17_Chr3g0134511 | 67.692 | 65 | 21 | 0 | 26 | 90 | 21 | 85 | 4.01e-26 | 92.0 |
| Msa1463430 | MtrunA17_Chr5g0415001 | 45.161 | 93 | 47 | 2 | 1 | 90 | 1 | 92 | 9.31e-20 | 76.3 |
| Msa1463430 | MtrunA17_Chr5g0415091 | 59.016 | 61 | 25 | 0 | 30 | 90 | 28 | 88 | 1.31e-19 | 75.9 |
| Msa1463430 | MtrunA17_Chr5g0415111 | 42.683 | 82 | 45 | 1 | 9 | 90 | 4 | 83 | 2.30e-17 | 69.7 |
| Msa1463430 | MtrunA17_Chr5g0415051 | 47.761 | 67 | 35 | 0 | 24 | 90 | 5 | 71 | 3.51e-17 | 68.9 |
| Msa1463430 | MtrunA17_Chr3g0078781 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.78e-16 | 66.6 |
| Msa1463430 | MtrunA17_Chr5g0446671 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.87e-16 | 66.6 |
| Msa1463430 | MtrunA17_Chr6g0453241 | 34.951 | 103 | 48 | 2 | 7 | 90 | 5 | 107 | 5.95e-15 | 64.3 |
| Msa1463430 | MtrunA17_Chr1g0200531 | 37.500 | 96 | 53 | 1 | 2 | 90 | 5 | 100 | 1.15e-14 | 63.5 |
| Msa1463430 | MtrunA17_Chr1g0156601 | 35.354 | 99 | 51 | 1 | 5 | 90 | 3 | 101 | 1.79e-14 | 63.2 |
| Msa1463430 | MtrunA17_Chr7g0217311 | 46.774 | 62 | 33 | 0 | 29 | 90 | 48 | 109 | 2.01e-14 | 63.2 |
| Msa1463430 | MtrunA17_Chr5g0434631 | 41.558 | 77 | 41 | 1 | 18 | 90 | 20 | 96 | 3.19e-14 | 62.4 |
| Msa1463430 | MtrunA17_Chr3g0092361 | 33.696 | 92 | 46 | 1 | 14 | 90 | 12 | 103 | 3.31e-14 | 62.4 |
| Msa1463430 | MtrunA17_Chr3g0142671 | 32.653 | 98 | 51 | 1 | 8 | 90 | 6 | 103 | 1.46e-13 | 60.8 |
| Msa1463430 | MtrunA17_Chr7g0256821 | 42.857 | 63 | 36 | 0 | 28 | 90 | 58 | 120 | 1.67e-13 | 60.8 |
| Msa1463430 | MtrunA17_Chr8g0364311 | 45.902 | 61 | 32 | 1 | 31 | 90 | 52 | 112 | 1.71e-12 | 58.2 |
| Msa1463430 | MtrunA17_Chr1g0156621 | 40.000 | 75 | 40 | 1 | 21 | 90 | 26 | 100 | 2.84e-12 | 57.4 |
| Msa1463430 | MtrunA17_Chr6g0451481 | 47.541 | 61 | 31 | 1 | 31 | 90 | 159 | 219 | 3.04e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463430 | AT5G59845.1 | 60.440 | 91 | 33 | 2 | 1 | 90 | 1 | 89 | 3.97e-28 | 97.8 |
| Msa1463430 | AT2G39540.1 | 54.444 | 90 | 38 | 1 | 1 | 90 | 1 | 87 | 1.52e-26 | 93.6 |
| Msa1463430 | AT2G14900.1 | 69.492 | 59 | 18 | 0 | 32 | 90 | 50 | 108 | 4.46e-26 | 93.2 |
| Msa1463430 | AT1G10588.1 | 56.180 | 89 | 36 | 2 | 3 | 90 | 4 | 90 | 1.51e-25 | 91.3 |
| Msa1463430 | AT1G10588.2 | 53.933 | 89 | 37 | 2 | 3 | 90 | 4 | 89 | 3.51e-24 | 87.8 |
| Msa1463430 | AT1G74670.1 | 36.634 | 101 | 53 | 1 | 1 | 90 | 1 | 101 | 2.03e-16 | 68.2 |
| Msa1463430 | AT5G15230.1 | 30.189 | 106 | 58 | 1 | 1 | 90 | 1 | 106 | 2.61e-13 | 60.5 |
| Msa1463430 | AT4G09600.1 | 40.244 | 82 | 40 | 2 | 18 | 90 | 18 | 99 | 8.04e-13 | 58.9 |
| Msa1463430 | AT5G15230.2 | 44.262 | 61 | 34 | 0 | 30 | 90 | 23 | 83 | 4.62e-12 | 56.6 |
| Msa1463430 | AT1G22690.1 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa1463430 | AT1G22690.2 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa1463430 | AT1G22690.3 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
Find 48 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTATGCTTCTCTTTCT+TGG | 0.113371 | tig0043289:-8006 | Msa1463430:CDS |
| ACAATGTCTCTCACATTTAT+TGG | 0.225096 | tig0043289:+7437 | Msa1463430:intergenic |
| CAGAGACAAGGTTAACAATA+AGG | 0.287897 | tig0043289:-7697 | Msa1463430:CDS |
| GCATGCAATGGTTTCAGTTC+TGG | 0.302247 | tig0043289:+8323 | Msa1463430:intergenic |
| TGTGTTCCTTCTGGGACTTA+TGG | 0.316342 | tig0043289:-7744 | Msa1463430:CDS |
| GTGTTCCTTCTGGGACTTAT+GGG | 0.319469 | tig0043289:-7743 | Msa1463430:CDS |
| TAATTGACATCAAGGGCATT+TGG | 0.329972 | tig0043289:+7668 | Msa1463430:intergenic |
| GAGTGCAAATGTGTTCCTTC+TGG | 0.347493 | tig0043289:-7753 | Msa1463430:CDS |
| CTTTAAAGATGGTGCCAACT+TGG | 0.375509 | tig0043289:+8168 | Msa1463430:intergenic |
| AATTGACATCAAGGGCATTT+GGG | 0.384143 | tig0043289:+7669 | Msa1463430:intergenic |
| CGAACACTTGCTGCTACAAT+TGG | 0.398537 | tig0043289:+7839 | Msa1463430:intergenic |
| TATGTGATACAATAGAAAAT+AGG | 0.402948 | tig0043289:+8257 | Msa1463430:intergenic |
| AGGTGGAGTCGGTGTGTTGT+AGG | 0.412194 | tig0043289:+8277 | Msa1463430:intergenic |
| CTAAAGCAGGGGTTCAAGAT+AGG | 0.424996 | tig0043289:-7806 | Msa1463430:CDS |
| GGAGCTAGCCATTGCATATG+AGG | 0.425249 | tig0043289:-7985 | Msa1463430:CDS |
| AATGATAGGAATGCGCTAGA+AGG | 0.441151 | tig0043289:-8367 | None:intergenic |
| TATTGATGAATCTTTAAAGA+TGG | 0.449882 | tig0043289:+8157 | Msa1463430:intergenic |
| TCACATTTATTGGTCTAAAA+CGG | 0.456902 | tig0043289:+7447 | Msa1463430:intergenic |
| GAGTTCACTAAGATGGTTAG+TGG | 0.458624 | tig0043289:-7601 | Msa1463430:three_prime_UTR |
| AGAGACAAGGTTAACAATAA+GGG | 0.465278 | tig0043289:-7696 | Msa1463430:CDS |
| TTTGTTAGTAATTGACATCA+AGG | 0.467943 | tig0043289:+7660 | Msa1463430:intergenic |
| AGAAAGAGAAGCATAGAAGA+AGG | 0.472112 | tig0043289:+8009 | Msa1463430:intergenic |
| ATCTAACACCCGACAAACAT+TGG | 0.482241 | tig0043289:+7514 | Msa1463430:intergenic |
| TTAGCGATTTCTCAGTATGT+TGG | 0.488280 | tig0043289:-7560 | Msa1463430:three_prime_UTR |
| AGTAAACACACACGCTCGCT+TGG | 0.489816 | tig0043289:+7635 | Msa1463430:intergenic |
| TTTAAAGATGGTGCCAACTT+GGG | 0.492479 | tig0043289:+8169 | Msa1463430:intergenic |
| AGTGCAAATGTGTTCCTTCT+GGG | 0.495711 | tig0043289:-7752 | Msa1463430:CDS |
| TTGTGATAGCATTAGCAAGT+AGG | 0.508973 | tig0043289:+8121 | Msa1463430:intergenic |
| GTCGGTGTGTTGTAGGACTA+AGG | 0.510822 | tig0043289:+8284 | Msa1463430:intergenic |
| GAAAGAGAAGCATAGAAGAA+GGG | 0.513355 | tig0043289:+8010 | Msa1463430:intergenic |
| CAATTGTAGCAGCAAGTGTT+CGG | 0.519914 | tig0043289:-7838 | Msa1463430:CDS |
| TCGGACAGATGCTCTAAAGC+AGG | 0.531159 | tig0043289:-7819 | Msa1463430:CDS |
| CAATAGAAAATAGGTGGAGT+CGG | 0.555914 | tig0043289:+8266 | Msa1463430:intergenic |
| TTAGTGGTGCTACCTGTGTA+AGG | 0.562851 | tig0043289:-7585 | Msa1463430:three_prime_UTR |
| CGGACAGATGCTCTAAAGCA+GGG | 0.574198 | tig0043289:-7818 | Msa1463430:CDS |
| GTGATACAATAGAAAATAGG+TGG | 0.581085 | tig0043289:+8260 | None:intergenic |
| GAATGCGCTAGAAGGATTCG+TGG | 0.581723 | tig0043289:-8359 | None:intergenic |
| TTAACCTTGTCTCTGTAGCA+AGG | 0.582422 | tig0043289:+7705 | Msa1463430:intergenic |
| TTGTTAGTAATTGACATCAA+GGG | 0.585883 | tig0043289:+7661 | Msa1463430:intergenic |
| GACATTGAGACAGCATGCAA+TGG | 0.589121 | tig0043289:+8311 | Msa1463430:intergenic |
| ACATGAATCCTCATATGCAA+TGG | 0.604589 | tig0043289:+7977 | Msa1463430:intergenic |
| AATAGCAACATGGTGAAGAG+AGG | 0.630987 | tig0043289:+8038 | Msa1463430:intergenic |
| GCGCTAGAAGGATTCGTGGG+TGG | 0.656000 | tig0043289:-8355 | Msa1463430:five_prime_UTR |
| TTGTTCCCATAAGTCCCAGA+AGG | 0.664123 | tig0043289:+7738 | Msa1463430:intergenic |
| ATGTCCTTGCTACAGAGACA+AGG | 0.668753 | tig0043289:-7709 | Msa1463430:CDS |
| GGACAGATGCTCTAAAGCAG+GGG | 0.697192 | tig0043289:-7817 | Msa1463430:CDS |
| AAATCGCTAACACCTTACAC+AGG | 0.707359 | tig0043289:+7573 | Msa1463420:intergenic |
| AAGGGAACAGAATAGCAACA+TGG | 0.736288 | tig0043289:+8028 | Msa1463420:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTCTTTTACTTTTTT+TGG | - | tig0043289:7789-7808 | Msa1463430:CDS | 10.0% |
| !!! | TTCTTTTGTTATTAATTTTA+TGG | - | tig0043289:8322-8341 | Msa1463430:five_prime_UTR | 10.0% |
| !!! | TTATATTCTTTTACTTTTTT+TGG | - | tig0043289:7789-7808 | Msa1463430:CDS | 10.0% |
| !!! | TTCTTTTGTTATTAATTTTA+TGG | - | tig0043289:8322-8341 | Msa1463430:five_prime_UTR | 10.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | - | tig0043289:8214-8233 | Msa1463430:five_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | - | tig0043289:8215-8234 | Msa1463430:five_prime_UTR | 15.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | - | tig0043289:8214-8233 | Msa1463430:five_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | - | tig0043289:8215-8234 | Msa1463430:five_prime_UTR | 15.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | + | tig0043289:7438-7457 | Msa0200260:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | + | tig0043289:7476-7495 | Msa0200260:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | + | tig0043289:7538-7557 | Msa1463430:intergenic | 20.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | + | tig0043289:7438-7457 | Msa1463430:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | + | tig0043289:7476-7495 | Msa1463430:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | + | tig0043289:7538-7557 | Msa1463430:intergenic | 20.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | - | tig0043289:7827-7846 | Msa1463430:CDS | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | + | tig0043289:8034-8053 | Msa1463430:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | + | tig0043289:8035-8054 | Msa1463430:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+CGG | + | tig0043289:8248-8267 | Msa1463430:intergenic | 25.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | - | tig0043289:7827-7846 | Msa1463430:CDS | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | + | tig0043289:8034-8053 | Msa1463430:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | + | tig0043289:8035-8054 | Msa1463430:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+CGG | + | tig0043289:8248-8267 | Msa1463430:intergenic | 25.0% |
| GTGATACAATAGAAAATAGG+TGG | + | tig0043289:7435-7454 | Msa0200260:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | + | tig0043289:7507-7526 | Msa0200260:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | - | tig0043289:7510-7529 | Msa1463430:three_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | - | tig0043289:7747-7766 | Msa1463430:CDS | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | + | tig0043289:7754-7773 | Msa1463430:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | - | tig0043289:7996-8015 | Msa1463430:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | - | tig0043289:8069-8088 | Msa1463430:five_prime_UTR | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | - | tig0043289:8169-8188 | Msa1463430:five_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | + | tig0043289:8258-8277 | Msa1463430:intergenic | 30.0% | |
| GTGATACAATAGAAAATAGG+TGG | + | tig0043289:7435-7454 | Msa1463430:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | + | tig0043289:7507-7526 | Msa1463430:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | - | tig0043289:7510-7529 | Msa1463430:three_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | - | tig0043289:7747-7766 | Msa1463430:CDS | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | + | tig0043289:7754-7773 | Msa1463430:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | - | tig0043289:7996-8015 | Msa1463430:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | - | tig0043289:8069-8088 | Msa1463430:five_prime_UTR | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | - | tig0043289:8169-8188 | Msa1463430:five_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | + | tig0043289:8258-8277 | Msa1463430:intergenic | 30.0% | |
| CAATAGAAAATAGGTGGAGT+CGG | + | tig0043289:7429-7448 | Msa0200260:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | + | tig0043289:7526-7545 | Msa1463430:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | + | tig0043289:7574-7593 | Msa1463430:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | + | tig0043289:7685-7704 | Msa1463430:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | + | tig0043289:7686-7705 | Msa1463430:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | - | tig0043289:7686-7705 | Msa1463430:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | + | tig0043289:7718-7737 | Msa1463430:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | + | tig0043289:7837-7856 | Msa1463430:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | - | tig0043289:7995-8014 | Msa1463430:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | + | tig0043289:8026-8045 | Msa1463430:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | + | tig0043289:8027-8046 | Msa1463430:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | - | tig0043289:8084-8103 | Msa1463430:five_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | - | tig0043289:8132-8151 | Msa1463430:five_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | - | tig0043289:8170-8189 | Msa1463430:five_prime_UTR | 35.0% |
| CAATAGAAAATAGGTGGAGT+CGG | + | tig0043289:7429-7448 | Msa1463430:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | + | tig0043289:7526-7545 | Msa1463430:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | + | tig0043289:7574-7593 | Msa1463430:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | + | tig0043289:7685-7704 | Msa1463430:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | + | tig0043289:7686-7705 | Msa1463430:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | - | tig0043289:7686-7705 | Msa1463430:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | + | tig0043289:7718-7737 | Msa1463430:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | + | tig0043289:7837-7856 | Msa1463430:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | - | tig0043289:7995-8014 | Msa1463430:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | + | tig0043289:8026-8045 | Msa1463430:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | + | tig0043289:8027-8046 | Msa1463430:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | - | tig0043289:8084-8103 | Msa1463430:five_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | - | tig0043289:8132-8151 | Msa1463430:five_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | - | tig0043289:8170-8189 | Msa1463430:five_prime_UTR | 35.0% |
| ! | CTTTAAAGATGGTGCCAACT+TGG | + | tig0043289:7527-7546 | Msa1463430:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | + | tig0043289:7657-7676 | Msa1463430:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | + | tig0043289:7667-7686 | Msa1463430:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | - | tig0043289:7854-7873 | Msa1463430:intron | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | - | tig0043289:7940-7959 | Msa1463430:intron | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | + | tig0043289:7990-8009 | Msa1463430:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | - | tig0043289:8091-8110 | Msa1463430:five_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | + | tig0043289:8122-8141 | Msa1463430:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | + | tig0043289:8181-8200 | Msa1463430:intergenic | 40.0% | |
| ! | CTTTAAAGATGGTGCCAACT+TGG | + | tig0043289:7527-7546 | Msa1463430:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | + | tig0043289:7657-7676 | Msa1463430:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | + | tig0043289:7667-7686 | Msa1463430:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | - | tig0043289:7854-7873 | Msa1463430:intron | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | - | tig0043289:7940-7959 | Msa1463430:intron | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | + | tig0043289:7990-8009 | Msa1463430:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | - | tig0043289:8091-8110 | Msa1463430:five_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | + | tig0043289:8122-8141 | Msa1463430:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | + | tig0043289:8181-8200 | Msa1463430:intergenic | 40.0% | |
| GCATGCAATGGTTTCAGTTC+TGG | + | tig0043289:7372-7391 | Msa0200260:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | + | tig0043289:7384-7403 | Msa0200260:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | + | tig0043289:7856-7875 | Msa1463430:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | - | tig0043289:7886-7905 | Msa1463430:intron | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | - | tig0043289:7939-7958 | Msa1463430:intron | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | - | tig0043289:7948-7967 | Msa1463430:intron | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | - | tig0043289:7949-7968 | Msa1463430:intron | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | + | tig0043289:7957-7976 | Msa1463430:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | - | tig0043289:7983-8002 | Msa1463430:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | - | tig0043289:8107-8126 | Msa1463430:five_prime_UTR | 45.0% |
| GCATGCAATGGTTTCAGTTC+TGG | + | tig0043289:7372-7391 | Msa1463430:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | + | tig0043289:7384-7403 | Msa1463430:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | + | tig0043289:7856-7875 | Msa1463430:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | - | tig0043289:7886-7905 | Msa1463430:intron | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | - | tig0043289:7939-7958 | Msa1463430:intron | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | - | tig0043289:7948-7967 | Msa1463430:intron | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | - | tig0043289:7949-7968 | Msa1463430:intron | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | + | tig0043289:7957-7976 | Msa1463430:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | - | tig0043289:7983-8002 | Msa1463430:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | - | tig0043289:8107-8126 | Msa1463430:five_prime_UTR | 45.0% |
| GTCGGTGTGTTGTAGGACTA+AGG | + | tig0043289:7411-7430 | Msa0200260:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | - | tig0043289:7707-7726 | Msa1463430:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | - | tig0043289:7873-7892 | Msa1463430:intron | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | - | tig0043289:7874-7893 | Msa1463430:intron | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | - | tig0043289:7875-7894 | Msa1463430:intron | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | + | tig0043289:8060-8079 | Msa1463430:intergenic | 50.0% | |
| GTCGGTGTGTTGTAGGACTA+AGG | + | tig0043289:7411-7430 | Msa1463430:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | - | tig0043289:7707-7726 | Msa1463430:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | - | tig0043289:7873-7892 | Msa1463430:intron | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | - | tig0043289:7874-7893 | Msa1463430:intron | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | - | tig0043289:7875-7894 | Msa1463430:intron | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | + | tig0043289:8060-8079 | Msa1463430:intergenic | 50.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | + | tig0043289:7418-7437 | Msa0200260:intergenic | 55.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | + | tig0043289:7418-7437 | Msa1463430:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043289 | gene | 7339 | 8375 | 7339 | ID=Msa1463430;Name=Msa1463430 |
| tig0043289 | mRNA | 7339 | 8375 | 7339 | ID=Msa1463430-mRNA-1;Parent=Msa1463430;Name=Msa1463430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=309|1|1|1|1|1|2|338|90 |
| tig0043289 | exon | 7339 | 7861 | 7339 | ID=Msa1463430-mRNA-1:exon:24047;Parent=Msa1463430-mRNA-1 |
| tig0043289 | exon | 7979 | 8375 | 7979 | ID=Msa1463430-mRNA-1:exon:24046;Parent=Msa1463430-mRNA-1 |
| tig0043289 | five_prime_UTR | 8067 | 8375 | 8067 | ID=Msa1463430-mRNA-1:five_prime_utr;Parent=Msa1463430-mRNA-1 |
| tig0043289 | CDS | 7979 | 8066 | 7979 | ID=Msa1463430-mRNA-1:cds;Parent=Msa1463430-mRNA-1 |
| tig0043289 | CDS | 7677 | 7861 | 7677 | ID=Msa1463430-mRNA-1:cds;Parent=Msa1463430-mRNA-1 |
| tig0043289 | three_prime_UTR | 7339 | 7676 | 7339 | ID=Msa1463430-mRNA-1:three_prime_utr;Parent=Msa1463430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
