Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870020 | XP_013450870.1 | 88.525 | 244 | 7 | 2 | 1 | 223 | 5 | 248 | 3.92e-134 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870020 | sp|Q9LFR3|GASAE_ARATH | 66.154 | 65 | 22 | 0 | 159 | 223 | 211 | 275 | 3.74e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870020 | I3T630 | 88.525 | 244 | 7 | 2 | 1 | 223 | 5 | 248 | 1.87e-134 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0870020 | 0.830369 | 3.052396e-55 | -8.615850e-47 |
| Msa0030070 | Msa0870020 | 0.814102 | 1.827648e-51 | -8.615850e-47 |
| Msa0033610 | Msa0870020 | 0.806968 | 6.356877e-50 | -8.615850e-47 |
| Msa0033640 | Msa0870020 | 0.812807 | 3.519784e-51 | -8.615850e-47 |
| Msa0037660 | Msa0870020 | 0.823642 | 1.241146e-53 | -8.615850e-47 |
| Msa0045620 | Msa0870020 | 0.820970 | 5.176539e-53 | -8.615850e-47 |
| Msa0050530 | Msa0870020 | 0.838252 | 3.211701e-57 | -8.615850e-47 |
| Msa0063190 | Msa0870020 | 0.826085 | 3.292223e-54 | -8.615850e-47 |
| Msa0100600 | Msa0870020 | 0.838446 | 2.862619e-57 | -8.615850e-47 |
| Msa0100890 | Msa0870020 | 0.827677 | 1.371253e-54 | -8.615850e-47 |
| Msa0108630 | Msa0870020 | 0.801377 | 9.265112e-49 | -8.615850e-47 |
| Msa0605350 | Msa0870020 | 0.809109 | 2.226210e-50 | -8.615850e-47 |
| Msa0605520 | Msa0870020 | 0.806394 | 8.402642e-50 | -8.615850e-47 |
| Msa0618990 | Msa0870020 | 0.800690 | 1.280438e-48 | -8.615850e-47 |
| Msa0623310 | Msa0870020 | 0.820314 | 7.321816e-53 | -8.615850e-47 |
| Msa0630440 | Msa0870020 | 0.835979 | 1.223777e-56 | -8.615850e-47 |
| Msa0646260 | Msa0870020 | 0.812393 | 4.337215e-51 | -8.615850e-47 |
| Msa0663290 | Msa0870020 | 0.802453 | 5.569547e-49 | -8.615850e-47 |
| Msa0673940 | Msa0870020 | 0.809951 | 1.467538e-50 | -8.615850e-47 |
| Msa0680370 | Msa0870020 | 0.802446 | 5.587686e-49 | -8.615850e-47 |
| Msa0680450 | Msa0870020 | 0.805988 | 1.022934e-49 | -8.615850e-47 |
| Msa0689830 | Msa0870020 | 0.806033 | 1.000998e-49 | -8.615850e-47 |
| Msa0707260 | Msa0870020 | 0.808760 | 2.643956e-50 | -8.615850e-47 |
| Msa0751720 | Msa0870020 | 0.816732 | 4.751890e-52 | -8.615850e-47 |
| Msa0771910 | Msa0870020 | 0.826595 | 2.488924e-54 | -8.615850e-47 |
| Msa0774060 | Msa0870020 | 0.807855 | 4.121582e-50 | -8.615850e-47 |
| Msa0810080 | Msa0870020 | 0.819339 | 1.223171e-52 | -8.615850e-47 |
| Msa0831820 | Msa0870020 | 0.812777 | 3.574013e-51 | -8.615850e-47 |
| Msa0837680 | Msa0870020 | 0.803968 | 2.705528e-49 | -8.615850e-47 |
| Msa0125590 | Msa0870020 | 0.816769 | 4.662923e-52 | -8.615850e-47 |
| Msa0147680 | Msa0870020 | 0.806270 | 8.925925e-50 | -8.615850e-47 |
| Msa0168380 | Msa0870020 | 0.820873 | 5.449172e-53 | -8.615850e-47 |
| Msa0206370 | Msa0870020 | 0.818590 | 1.810169e-52 | -8.615850e-47 |
| Msa0368920 | Msa0870020 | 0.802173 | 6.362039e-49 | -8.615850e-47 |
| Msa0416210 | Msa0870020 | 0.801696 | 7.971593e-49 | -8.615850e-47 |
| Msa0418100 | Msa0870020 | 0.831071 | 2.054667e-55 | -8.615850e-47 |
| Msa0433630 | Msa0870020 | 0.814707 | 1.343323e-51 | -8.615850e-47 |
| Msa0436440 | Msa0870020 | 0.810721 | 1.001328e-50 | -8.615850e-47 |
| Msa0260980 | Msa0870020 | 0.804074 | 2.571804e-49 | -8.615850e-47 |
| Msa0276800 | Msa0870020 | -0.833416 | 5.401011e-56 | -8.615850e-47 |
| Msa0316720 | Msa0870020 | -0.814111 | 1.819667e-51 | -8.615850e-47 |
| Msa0336430 | Msa0870020 | 0.809522 | 1.814846e-50 | -8.615850e-47 |
| Msa0336460 | Msa0870020 | 0.819093 | 1.391406e-52 | -8.615850e-47 |
| Msa0336520 | Msa0870020 | 0.818709 | 1.701606e-52 | -8.615850e-47 |
| Msa0521510 | Msa0870020 | 0.822862 | 1.887282e-53 | -8.615850e-47 |
| Msa0521530 | Msa0870020 | 0.815596 | 8.524991e-52 | -8.615850e-47 |
| Msa0526150 | Msa0870020 | 0.815396 | 9.443783e-52 | -8.615850e-47 |
| Msa0527850 | Msa0870020 | 0.801243 | 9.871647e-49 | -8.615850e-47 |
| Msa0533990 | Msa0870020 | 0.812117 | 4.982376e-51 | -8.615850e-47 |
| Msa0549870 | Msa0870020 | 0.814348 | 1.613207e-51 | -8.615850e-47 |
| Msa0568290 | Msa0870020 | -0.824162 | 9.370057e-54 | -8.615850e-47 |
| Msa0572360 | Msa0870020 | 0.848198 | 7.142947e-60 | -8.615850e-47 |
| Msa0587180 | Msa0870020 | 0.808658 | 2.779576e-50 | -8.615850e-47 |
| Msa0590000 | Msa0870020 | 0.826699 | 2.351092e-54 | -8.615850e-47 |
| Msa0846900 | Msa0870020 | 0.817591 | 3.045382e-52 | -8.615850e-47 |
| Msa0850600 | Msa0870020 | 0.835924 | 1.263935e-56 | -8.615850e-47 |
| Msa0861440 | Msa0870020 | 0.815585 | 8.574812e-52 | -8.615850e-47 |
| Msa0870020 | Msa0903340 | 0.892340 | 1.736750e-74 | -8.615850e-47 |
| Msa0870020 | Msa1021560 | 0.833799 | 4.332901e-56 | -8.615850e-47 |
| Msa0870020 | Msa1038860 | 0.818184 | 2.237900e-52 | -8.615850e-47 |
| Msa0870020 | Msa1060300 | 0.815509 | 8.913657e-52 | -8.615850e-47 |
| Msa0870020 | Msa1105540 | 0.811362 | 7.270386e-51 | -8.615850e-47 |
| Msa0870020 | Msa1105580 | 0.801280 | 9.702169e-49 | -8.615850e-47 |
| Msa0870020 | Msa1130770 | 0.815161 | 1.065163e-51 | -8.615850e-47 |
| Msa0870020 | Msa1148930 | 0.816990 | 4.159730e-52 | -8.615850e-47 |
| Msa0870020 | Msa1188340 | 0.801783 | 7.651000e-49 | -8.615850e-47 |
| Msa0870020 | Msa1206040 | 0.800653 | 1.302761e-48 | -8.615850e-47 |
| Msa0870020 | Msa1220580 | 0.806856 | 6.712298e-50 | -8.615850e-47 |
| Msa0870020 | Msa1240940 | 0.821229 | 4.511561e-53 | -8.615850e-47 |
| Msa0870020 | Msa1282300 | 0.863967 | 1.705666e-64 | -8.615850e-47 |
| Msa0870020 | Msa1308860 | 0.807547 | 4.792319e-50 | -8.615850e-47 |
| Msa0870020 | Msa1334560 | 0.813528 | 2.445557e-51 | -8.615850e-47 |
| Msa0870020 | Msa1352580 | 0.825764 | 3.924053e-54 | -8.615850e-47 |
| Msa0870020 | Msa1371800 | 0.816631 | 5.007289e-52 | -8.615850e-47 |
| Msa0870020 | Msa1372030 | 0.812285 | 4.578039e-51 | -8.615850e-47 |
| Msa0870020 | Msa1376310 | 0.819752 | 9.844688e-53 | -8.615850e-47 |
| Msa0870020 | Msa1379940 | 0.819756 | 9.825885e-53 | -8.615850e-47 |
| Msa0870020 | Msa1385570 | 0.801106 | 1.052836e-48 | -8.615850e-47 |
| Msa0870020 | Msa1398460 | 0.801447 | 8.966194e-49 | -8.615850e-47 |
| Msa0870020 | Msa1420830 | 0.808655 | 2.783485e-50 | -8.615850e-47 |
| Msa0870020 | Msa1447900 | 0.818667 | 1.739244e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870020 | MtrunA17_Chr6g0451481 | 88.889 | 225 | 13 | 4 | 1 | 223 | 5 | 219 | 7.82e-118 | 334 |
| Msa0870020 | MtrunA17_Chr6g0451501 | 44.395 | 223 | 59 | 5 | 1 | 223 | 5 | 162 | 1.06e-49 | 159 |
| Msa0870020 | MtrunA17_Chr6g0451491 | 60.577 | 104 | 36 | 2 | 125 | 223 | 27 | 130 | 3.47e-35 | 121 |
| Msa0870020 | MtrunA17_Chr8g0364311 | 68.750 | 64 | 20 | 0 | 160 | 223 | 49 | 112 | 2.79e-27 | 100 |
| Msa0870020 | MtrunA17_Chr4g0059421 | 72.131 | 61 | 17 | 0 | 163 | 223 | 55 | 115 | 4.83e-24 | 92.4 |
| Msa0870020 | MtrunA17_Chr1g0200531 | 55.224 | 67 | 29 | 1 | 157 | 223 | 35 | 100 | 4.93e-18 | 76.3 |
| Msa0870020 | MtrunA17_Chr3g0142671 | 53.030 | 66 | 30 | 1 | 158 | 223 | 39 | 103 | 1.34e-15 | 70.1 |
| Msa0870020 | MtrunA17_Chr1g0156601 | 59.016 | 61 | 24 | 1 | 163 | 223 | 42 | 101 | 3.27e-15 | 68.9 |
| Msa0870020 | MtrunA17_Chr1g0156621 | 57.377 | 61 | 25 | 1 | 163 | 223 | 41 | 100 | 2.10e-13 | 63.9 |
| Msa0870020 | MtrunA17_Chr1g0207611 | 47.541 | 61 | 31 | 1 | 163 | 223 | 31 | 90 | 2.06e-11 | 58.5 |
| Msa0870020 | MtrunA17_Chr5g0415001 | 46.774 | 62 | 32 | 1 | 162 | 223 | 32 | 92 | 3.77e-11 | 57.8 |
| Msa0870020 | MtrunA17_Chr8g0371941 | 46.753 | 77 | 35 | 2 | 147 | 223 | 33 | 103 | 6.26e-11 | 57.4 |
| Msa0870020 | MtrunA17_Chr3g0134511 | 46.667 | 60 | 31 | 1 | 164 | 223 | 27 | 85 | 9.27e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870020 | AT5G14920.1 | 66.154 | 65 | 22 | 0 | 159 | 223 | 211 | 275 | 3.80e-28 | 107 |
| Msa0870020 | AT1G75750.1 | 57.377 | 61 | 25 | 1 | 163 | 223 | 39 | 98 | 1.55e-14 | 67.4 |
| Msa0870020 | AT1G75750.2 | 57.377 | 61 | 25 | 1 | 163 | 223 | 38 | 97 | 1.92e-14 | 67.0 |
| Msa0870020 | AT2G18420.1 | 57.377 | 61 | 25 | 1 | 163 | 223 | 35 | 94 | 1.85e-13 | 64.3 |
| Msa0870020 | AT2G18420.2 | 57.377 | 61 | 25 | 1 | 163 | 223 | 11 | 70 | 3.01e-13 | 63.2 |
| Msa0870020 | AT1G22690.1 | 52.459 | 61 | 28 | 1 | 163 | 223 | 60 | 119 | 3.16e-13 | 64.7 |
| Msa0870020 | AT1G22690.2 | 52.459 | 61 | 28 | 1 | 163 | 223 | 60 | 119 | 3.16e-13 | 64.7 |
| Msa0870020 | AT1G22690.3 | 52.459 | 61 | 28 | 1 | 163 | 223 | 60 | 119 | 3.16e-13 | 64.7 |
| Msa0870020 | AT4G09600.1 | 55.738 | 61 | 26 | 1 | 163 | 223 | 40 | 99 | 6.92e-13 | 63.2 |
| Msa0870020 | AT2G14900.1 | 37.209 | 86 | 49 | 3 | 140 | 223 | 26 | 108 | 5.81e-11 | 58.2 |
Find 78 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCCATGATTTGACTAT+TGG | 0.215760 | 6_1:-4321906 | None:intergenic |
| CAAAATTCAAACAAAATTCT+TGG | 0.251667 | 6_1:-4322690 | None:intergenic |
| GCATTCCACTATGTGGTTAT+AGG | 0.264033 | 6_1:+4322305 | Msa0870020:CDS |
| ATCACCTCCTTCTCCTCCTT+TGG | 0.313521 | 6_1:+4321752 | Msa0870020:CDS |
| GTTATAAAGTTTATAATTGC+TGG | 0.319094 | 6_1:+4322552 | Msa0870020:three_prime_UTR |
| TGCATTATATAATGTATCTA+TGG | 0.348800 | 6_1:-4322481 | None:intergenic |
| TATATAATGCACCTATCTAA+TGG | 0.377533 | 6_1:+4322493 | Msa0870020:three_prime_UTR |
| TCTCTGTTACCATAAGTTCC+TGG | 0.385043 | 6_1:-4322403 | None:intergenic |
| TGTGTCCCTCCAGGAACTTA+TGG | 0.404918 | 6_1:+4322394 | Msa0870020:CDS |
| ACTATTGGTGGTGATTGATA+AGG | 0.424720 | 6_1:-4321849 | None:intergenic |
| TACAGTAACACCACCTTCTC+CGG | 0.437499 | 6_1:+4321563 | Msa0870020:CDS |
| GTTGGTGGTGCTTTGACAAT+AGG | 0.439045 | 6_1:-4321801 | None:intergenic |
| TGGCAAGTGTTACACTGATA+TGG | 0.441521 | 6_1:+4322432 | Msa0870020:CDS |
| GAAGGAGGTGATTTCACTAT+AGG | 0.446578 | 6_1:-4321741 | None:intergenic |
| GAAGGAGGTGATTTCACAAT+AGG | 0.447190 | 6_1:-4321651 | None:intergenic |
| AAGCTTAGAAACCATTAGAT+AGG | 0.448020 | 6_1:-4322504 | None:intergenic |
| ATCACCTCCTTCACCACCAT+TGG | 0.449182 | 6_1:+4321662 | Msa0870020:CDS |
| ACAATAGGTGGTGATTGATA+AGG | 0.462666 | 6_1:-4321786 | None:intergenic |
| GCAACTGGTGGTTTAACTAT+TGG | 0.464329 | 6_1:-4321864 | None:intergenic |
| GTAGGACTTGGTGGAGCTGT+AGG | 0.466764 | 6_1:-4321543 | None:intergenic |
| CTACTCCAATAGTCAAATCA+TGG | 0.478634 | 6_1:+4321901 | Msa0870020:CDS |
| GATTTCACTATAGGTGGAGT+TGG | 0.487620 | 6_1:-4321732 | None:intergenic |
| AACAAAATTCTTGGACCACA+TGG | 0.492555 | 6_1:-4322681 | None:intergenic |
| ATAGGTGGTGTTGGTTTCAC+TGG | 0.498511 | 6_1:-4321633 | None:intergenic |
| GGTGGTGGAGATGGAGCAAC+TGG | 0.499198 | 6_1:-4321879 | None:intergenic |
| TAGGACTTGGTGGAGCTGTA+GGG | 0.505215 | 6_1:-4321542 | None:intergenic |
| GATTTCACAATAGGTGGTGT+TGG | 0.507384 | 6_1:-4321642 | None:intergenic |
| TTCACTGGTGGTGATTGATA+AGG | 0.508150 | 6_1:-4321618 | None:intergenic |
| TTCACAATAGGTGGAGAAGT+TGG | 0.508969 | 6_1:-4321819 | None:intergenic |
| TGATGAAGATCTCAAGATAG+TGG | 0.509151 | 6_1:+4320678 | Msa0870020:CDS |
| CGGTGCAAATGTGTCCCTCC+AGG | 0.510158 | 6_1:+4322385 | Msa0870020:CDS |
| GAAATTAAATGGTATTGTCA+TGG | 0.514776 | 6_1:+4322716 | Msa0870020:three_prime_UTR |
| GGTGATTTCACTGGTGTTGG+TGG | 0.516723 | 6_1:-4321594 | None:intergenic |
| TAATGTATCTATGGACACTT+AGG | 0.518660 | 6_1:-4322472 | None:intergenic |
| CATGATTTGACTATTGGAGT+AGG | 0.520632 | 6_1:-4321900 | None:intergenic |
| GAGTAAAGATTATACCTTAG+TGG | 0.522596 | 6_1:-4320456 | None:intergenic |
| ATAGGTGGTGATTGATAAGG+AGG | 0.527587 | 6_1:-4321783 | None:intergenic |
| GGTGGTGATTTCACTGGTGT+TGG | 0.528464 | 6_1:-4321597 | None:intergenic |
| TTGACTATTGGAGTAGGTGG+TGG | 0.529784 | 6_1:-4321894 | None:intergenic |
| GGTGGAGTTGGTTTCACTAG+AGG | 0.533720 | 6_1:-4321720 | None:intergenic |
| GGTGTTACTGTAGGACTTGG+TGG | 0.535473 | 6_1:-4321552 | None:intergenic |
| TCCAATAGTCAAATCATGGA+AGG | 0.539250 | 6_1:+4321905 | Msa0870020:CDS |
| GGTGTTGGTGGTGCCTTCAC+CGG | 0.539827 | 6_1:-4321582 | None:intergenic |
| ATTGGAGTAGGTGGTGGAGA+TGG | 0.542148 | 6_1:-4321888 | None:intergenic |
| GGTTTCACTAGAGGAGGAGA+AGG | 0.546233 | 6_1:-4321711 | None:intergenic |
| AACACCACCTTCTCCGGTGA+AGG | 0.555008 | 6_1:+4321569 | Msa0870020:CDS |
| TTCACCAAAGGAGGAGAAGG+AGG | 0.556061 | 6_1:-4321756 | None:intergenic |
| GGTGGTGCCTTCACCGGAGA+AGG | 0.559907 | 6_1:-4321576 | None:intergenic |
| TGATAAGGTGGTGATTTCAC+TGG | 0.560885 | 6_1:-4321603 | None:intergenic |
| GAAGCAGGGACAAGAAGGTA+TGG | 0.561227 | 6_1:-4320382 | None:intergenic |
| TGGCACCTATAACCACATAG+TGG | 0.564127 | 6_1:-4322310 | None:intergenic |
| GGAGTTGGTTTCACTAGAGG+AGG | 0.568511 | 6_1:-4321717 | None:intergenic |
| GGAGGTGATTTCACTATAGG+TGG | 0.571713 | 6_1:-4321738 | None:intergenic |
| CTGGAGGGACACATTTGCAC+CGG | 0.583431 | 6_1:-4322384 | None:intergenic |
| CCAATAGTCAAATCATGGAA+GGG | 0.585464 | 6_1:+4321906 | Msa0870020:CDS |
| ACAATAGGTGGAGAAGTTGG+TGG | 0.588072 | 6_1:-4321816 | None:intergenic |
| GCAGATTGCATTCCACTATG+TGG | 0.591494 | 6_1:+4322298 | Msa0870020:intron |
| GATTGATCCAATGGTGGTGA+AGG | 0.594431 | 6_1:-4321669 | None:intergenic |
| GGTGGTGTTGGTTTCACTGG+TGG | 0.594612 | 6_1:-4321630 | None:intergenic |
| GTGTCAAGAGCTATCTAGTG+AGG | 0.598375 | 6_1:-4320354 | None:intergenic |
| GGAGGTGATTTCACAATAGG+TGG | 0.599121 | 6_1:-4321648 | None:intergenic |
| GGTGCCTTCACCGGAGAAGG+TGG | 0.603044 | 6_1:-4321573 | None:intergenic |
| ATAGGTGGTGATTGATCCAA+TGG | 0.604262 | 6_1:-4321678 | None:intergenic |
| ACTGGTGGTTTAACTATTGG+TGG | 0.610135 | 6_1:-4321861 | None:intergenic |
| ATTGGTGGTGATTGATAAGG+AGG | 0.614855 | 6_1:-4321846 | None:intergenic |
| GGTGGTGTTACTGTAGGACT+TGG | 0.623041 | 6_1:-4321555 | None:intergenic |
| ACTGGTGGTGATTGATAAGG+TGG | 0.624494 | 6_1:-4321615 | None:intergenic |
| CATGCATGACTTGTTGTGAC+CGG | 0.628034 | 6_1:+4322365 | Msa0870020:CDS |
| TACACTGATATGGTGACTCA+TGG | 0.628922 | 6_1:+4322442 | Msa0870020:CDS |
| GGAGAAGGTGGTGTTACTGT+AGG | 0.630386 | 6_1:-4321561 | None:intergenic |
| TGATCCAATGGTGGTGAAGG+AGG | 0.645718 | 6_1:-4321666 | None:intergenic |
| CTGTTACCATAAGTTCCTGG+AGG | 0.651625 | 6_1:-4322400 | None:intergenic |
| GGTGGTGCTTTGACAATAGG+TGG | 0.655833 | 6_1:-4321798 | None:intergenic |
| GATTTGACTATTGGAGTAGG+TGG | 0.657281 | 6_1:-4321897 | None:intergenic |
| GGTGGAGATGGAGCAACTGG+TGG | 0.657637 | 6_1:-4321876 | None:intergenic |
| TGTTACCATAAGTTCCTGGA+GGG | 0.694188 | 6_1:-4322399 | None:intergenic |
| GGTGGTGATTGATCCAATGG+TGG | 0.743238 | 6_1:-4321675 | None:intergenic |
| TCTATGTAATATGATCCATG+TGG | 0.767847 | 6_1:+4322666 | Msa0870020:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAATTAGAAGTA+TGG | - | chr6_1:4321109-4321128 | None:intergenic | 10.0% |
| !!! | TATTTATACTAAAATTTTAG+TGG | - | chr6_1:4321987-4322006 | None:intergenic | 10.0% |
| !! | AAATAAAATGTAAATTCAAT+TGG | - | chr6_1:4322145-4322164 | None:intergenic | 10.0% |
| !! | AAAATATTTATCTACTTAGA+AGG | + | chr6_1:4320503-4320522 | Msa0870020:intron | 15.0% |
| !! | TAAATCAAGAAGAAAAAAAT+TGG | - | chr6_1:4320587-4320606 | None:intergenic | 15.0% |
| !! | AAAATTAGTAATGTGATATT+TGG | + | chr6_1:4321500-4321519 | Msa0870020:intron | 15.0% |
| !!! | AAACTTTTTTGCTATTTTTT+TGG | + | chr6_1:4322042-4322061 | Msa0870020:intron | 15.0% |
| !! | TTATATTCACATATATACTA+TGG | + | chr6_1:4322183-4322202 | Msa0870020:intron | 15.0% |
| !!! | AAACTTTTATCTTTATTTTG+TGG | + | chr6_1:4322275-4322294 | Msa0870020:intron | 15.0% |
| !!! | AACTTTTATCTTTATTTTGT+GGG | + | chr6_1:4322276-4322295 | Msa0870020:intron | 15.0% |
| !!! | GAATTTTGATTGAAATTAAA+TGG | + | chr6_1:4322705-4322724 | Msa0870020:three_prime_UTR | 15.0% |
| !! | AAAAATGCTTAGAAGAAAAA+TGG | - | chr6_1:4320426-4320445 | None:intergenic | 20.0% |
| !! | TATAATATATCTTTATGTGC+AGG | + | chr6_1:4320645-4320664 | Msa0870020:intron | 20.0% |
| !! | GAATCAAACAAAAATAGAAA+GGG | - | chr6_1:4320731-4320750 | None:intergenic | 20.0% |
| !!! | GTTGATCTGTTTTTTAATAA+AGG | - | chr6_1:4320914-4320933 | None:intergenic | 20.0% |
| !!! | ATAAAAATTAGAAGTATGGT+AGG | - | chr6_1:4321105-4321124 | None:intergenic | 20.0% |
| !! | TTGACAAAATTATCGTAATA+TGG | - | chr6_1:4321228-4321247 | None:intergenic | 20.0% |
| !!! | TTGTATAGTAGTTATTGTTT+TGG | - | chr6_1:4321283-4321302 | None:intergenic | 20.0% |
| !!! | AAAATTTTAGTGGTTAAGTA+TGG | - | chr6_1:4321977-4321996 | None:intergenic | 20.0% |
| !! | AACTAGTGATTAATTAATCT+TGG | + | chr6_1:4322221-4322240 | Msa0870020:intron | 20.0% |
| !! | TGCATTATATAATGTATCTA+TGG | - | chr6_1:4322484-4322503 | None:intergenic | 20.0% |
| !! | GTTATAAAGTTTATAATTGC+TGG | + | chr6_1:4322552-4322571 | Msa0870020:three_prime_UTR | 20.0% |
| !! | CAAAATTCAAACAAAATTCT+TGG | - | chr6_1:4322693-4322712 | None:intergenic | 20.0% |
| !!! | ATGGAAATATATTTTGCTAT+TGG | + | chr6_1:4322735-4322754 | Msa0870020:three_prime_UTR | 20.0% |
| ! | AATAATGAGTAAGTGAAAAG+TGG | - | chr6_1:4320481-4320500 | None:intergenic | 25.0% |
| ! | ATATTTATCTACTTAGAAGG+TGG | + | chr6_1:4320506-4320525 | Msa0870020:intron | 25.0% |
| ! | GGAATCAAACAAAAATAGAA+AGG | - | chr6_1:4320732-4320751 | None:intergenic | 25.0% |
| ! | TTCTGATAAGGATGTTTAAA+GGG | - | chr6_1:4320753-4320772 | None:intergenic | 25.0% |
| ! | TTTCTGATAAGGATGTTTAA+AGG | - | chr6_1:4320754-4320773 | None:intergenic | 25.0% |
| ! | TAAGAAAGAACTTTCTGATA+AGG | - | chr6_1:4320765-4320784 | None:intergenic | 25.0% |
| ! | AGTTAGAGAAAAGAGAAATT+AGG | + | chr6_1:4320968-4320987 | Msa0870020:intron | 25.0% |
| !! | TCTAAAACTAAAAAGACCAA+TGG | + | chr6_1:4320997-4321016 | Msa0870020:intron | 25.0% |
| !! | TCTTTTCTATATCTTTCCAT+TGG | - | chr6_1:4321016-4321035 | None:intergenic | 25.0% |
| !!! | AAAAATCCTTGTTTGTTATG+AGG | - | chr6_1:4321168-4321187 | None:intergenic | 25.0% |
| ! | CAAAGATATGATTAGATGTT+TGG | + | chr6_1:4322015-4322034 | Msa0870020:intron | 25.0% |
| ! | TATATAATGCACCTATCTAA+TGG | + | chr6_1:4322493-4322512 | Msa0870020:three_prime_UTR | 25.0% |
| ! | GAAATTAAATGGTATTGTCA+TGG | + | chr6_1:4322716-4322735 | Msa0870020:three_prime_UTR | 25.0% |
| GAGTAAAGATTATACCTTAG+TGG | - | chr6_1:4320459-4320478 | None:intergenic | 30.0% | |
| TTTCTCTAACTTAGAACAAG+AGG | - | chr6_1:4320959-4320978 | None:intergenic | 30.0% | |
| AAATATGACGTGTTACGTTA+TGG | - | chr6_1:4321256-4321275 | None:intergenic | 30.0% | |
| GTATAGTAGTAGTAAAATCG+CGG | - | chr6_1:4321327-4321346 | None:intergenic | 30.0% | |
| GAGTGAATTTGACAAAATCA+CGG | - | chr6_1:4321426-4321445 | None:intergenic | 30.0% | |
| !!! | CTATTTTTTTGGTACTAGAG+AGG | + | chr6_1:4322053-4322072 | Msa0870020:intron | 30.0% |
| ACAAGTAGAGTTACTAAGTT+AGG | - | chr6_1:4322087-4322106 | None:intergenic | 30.0% | |
| TATGGTAACAGAGAAAAATG+TGG | + | chr6_1:4322412-4322431 | Msa0870020:CDS | 30.0% | |
| TAATGTATCTATGGACACTT+AGG | - | chr6_1:4322475-4322494 | None:intergenic | 30.0% | |
| AAGCTTAGAAACCATTAGAT+AGG | - | chr6_1:4322507-4322526 | None:intergenic | 30.0% | |
| TCTATGTAATATGATCCATG+TGG | + | chr6_1:4322666-4322685 | Msa0870020:three_prime_UTR | 30.0% | |
| !!! | TGAAGCCATTTTTTGAAGCA+GGG | - | chr6_1:4320399-4320418 | None:intergenic | 35.0% |
| !!! | TTGAAGCCATTTTTTGAAGC+AGG | - | chr6_1:4320400-4320419 | None:intergenic | 35.0% |
| TGATGAAGATCTCAAGATAG+TGG | + | chr6_1:4320678-4320697 | Msa0870020:CDS | 35.0% | |
| TTATGAGGTTAGGGAAATGT+AGG | - | chr6_1:4321153-4321172 | None:intergenic | 35.0% | |
| !! | CCTTGTTTGTTATGAGGTTA+GGG | - | chr6_1:4321162-4321181 | None:intergenic | 35.0% |
| !! | TCCTTGTTTGTTATGAGGTT+AGG | - | chr6_1:4321163-4321182 | None:intergenic | 35.0% |
| TTGACAAAATCACGGTAACA+TGG | - | chr6_1:4321418-4321437 | None:intergenic | 35.0% | |
| !! | AGTAATGTGATATTTGGTGC+AGG | + | chr6_1:4321506-4321525 | Msa0870020:intron | 35.0% |
| ACAATAGGTGGTGATTGATA+AGG | - | chr6_1:4321789-4321808 | None:intergenic | 35.0% | |
| !!! | TAAGGAGGTGTTTTCACAAT+AGG | - | chr6_1:4321834-4321853 | None:intergenic | 35.0% |
| !! | ACTATTGGTGGTGATTGATA+AGG | - | chr6_1:4321852-4321871 | None:intergenic | 35.0% |
| CATGATTTGACTATTGGAGT+AGG | - | chr6_1:4321903-4321922 | None:intergenic | 35.0% | |
| CTACTCCAATAGTCAAATCA+TGG | + | chr6_1:4321901-4321920 | Msa0870020:CDS | 35.0% | |
| TCCAATAGTCAAATCATGGA+AGG | + | chr6_1:4321905-4321924 | Msa0870020:CDS | 35.0% | |
| CCAATAGTCAAATCATGGAA+GGG | + | chr6_1:4321906-4321925 | Msa0870020:CDS | 35.0% | |
| ATAGGTGCCAAAAACATTCT+AGG | + | chr6_1:4322323-4322342 | Msa0870020:CDS | 35.0% | |
| ! | TGTTCTGCCTAGAATGTTTT+TGG | - | chr6_1:4322333-4322352 | None:intergenic | 35.0% |
| AACAAAATTCTTGGACCACA+TGG | - | chr6_1:4322684-4322703 | None:intergenic | 35.0% | |
| !!! | TTTTTGAAGCAGGGACAAGA+AGG | - | chr6_1:4320390-4320409 | None:intergenic | 40.0% |
| CTTGTCCCTGCTTCAAAAAA+TGG | + | chr6_1:4320391-4320410 | Msa0870020:exon | 40.0% | |
| CCCTAACCTCATAACAAACA+AGG | + | chr6_1:4321159-4321178 | Msa0870020:intron | 40.0% | |
| CCTCGTCTATAGTAAAATCG+CGG | - | chr6_1:4321373-4321392 | None:intergenic | 40.0% | |
| TGATAAGGTGGTGATTTCAC+TGG | - | chr6_1:4321606-4321625 | None:intergenic | 40.0% | |
| ! | TTCACTGGTGGTGATTGATA+AGG | - | chr6_1:4321621-4321640 | None:intergenic | 40.0% |
| GATTTCACAATAGGTGGTGT+TGG | - | chr6_1:4321645-4321664 | None:intergenic | 40.0% | |
| GAAGGAGGTGATTTCACAAT+AGG | - | chr6_1:4321654-4321673 | None:intergenic | 40.0% | |
| ATAGGTGGTGATTGATCCAA+TGG | - | chr6_1:4321681-4321700 | None:intergenic | 40.0% | |
| !!! | GAAGGTGCTTTTACAATAGG+TGG | - | chr6_1:4321696-4321715 | None:intergenic | 40.0% |
| !!! | GGAGAAGGTGCTTTTACAAT+AGG | - | chr6_1:4321699-4321718 | None:intergenic | 40.0% |
| GATTTCACTATAGGTGGAGT+TGG | - | chr6_1:4321735-4321754 | None:intergenic | 40.0% | |
| GAAGGAGGTGATTTCACTAT+AGG | - | chr6_1:4321744-4321763 | None:intergenic | 40.0% | |
| ! | TAAGGAGGAGTTTTCACCAA+AGG | - | chr6_1:4321771-4321790 | None:intergenic | 40.0% |
| ATAGGTGGTGATTGATAAGG+AGG | - | chr6_1:4321786-4321805 | None:intergenic | 40.0% | |
| TTCACAATAGGTGGAGAAGT+TGG | - | chr6_1:4321822-4321841 | None:intergenic | 40.0% | |
| !! | ATTGGTGGTGATTGATAAGG+AGG | - | chr6_1:4321849-4321868 | None:intergenic | 40.0% |
| ACTGGTGGTTTAACTATTGG+TGG | - | chr6_1:4321864-4321883 | None:intergenic | 40.0% | |
| GCAACTGGTGGTTTAACTAT+TGG | - | chr6_1:4321867-4321886 | None:intergenic | 40.0% | |
| GATTTGACTATTGGAGTAGG+TGG | - | chr6_1:4321900-4321919 | None:intergenic | 40.0% | |
| CCCTTCCATGATTTGACTAT+TGG | - | chr6_1:4321909-4321928 | None:intergenic | 40.0% | |
| GAGTTACTAAGTTAGGCATG+TGG | - | chr6_1:4322080-4322099 | None:intergenic | 40.0% | |
| GCATTCCACTATGTGGTTAT+AGG | + | chr6_1:4322305-4322324 | Msa0870020:CDS | 40.0% | |
| TGTTACCATAAGTTCCTGGA+GGG | - | chr6_1:4322402-4322421 | None:intergenic | 40.0% | |
| TCTCTGTTACCATAAGTTCC+TGG | - | chr6_1:4322406-4322425 | None:intergenic | 40.0% | |
| TGGCAAGTGTTACACTGATA+TGG | + | chr6_1:4322432-4322451 | Msa0870020:CDS | 40.0% | |
| TACACTGATATGGTGACTCA+TGG | + | chr6_1:4322442-4322461 | Msa0870020:CDS | 40.0% | |
| GTGTCAAGAGCTATCTAGTG+AGG | - | chr6_1:4320357-4320376 | None:intergenic | 45.0% | |
| ! | TTTTCTTGTGCTCGCCACTA+AGG | + | chr6_1:4320442-4320461 | Msa0870020:CDS | 45.0% |
| ! | CCGCGATTTTACTATAGACG+AGG | + | chr6_1:4321370-4321389 | Msa0870020:intron | 45.0% |
| TACAGTAACACCACCTTCTC+CGG | + | chr6_1:4321563-4321582 | Msa0870020:CDS | 45.0% | |
| ! | ACTGGTGGTGATTGATAAGG+TGG | - | chr6_1:4321618-4321637 | None:intergenic | 45.0% |
| !! | ATAGGTGGTGTTGGTTTCAC+TGG | - | chr6_1:4321636-4321655 | None:intergenic | 45.0% |
| GGAGGTGATTTCACAATAGG+TGG | - | chr6_1:4321651-4321670 | None:intergenic | 45.0% | |
| ! | GATTGATCCAATGGTGGTGA+AGG | - | chr6_1:4321672-4321691 | None:intergenic | 45.0% |
| GGAGGTGATTTCACTATAGG+TGG | - | chr6_1:4321741-4321760 | None:intergenic | 45.0% | |
| ! | GTTTTCACCAAAGGAGGAGA+AGG | - | chr6_1:4321762-4321781 | None:intergenic | 45.0% |
| !! | GTTGGTGGTGCTTTGACAAT+AGG | - | chr6_1:4321804-4321823 | None:intergenic | 45.0% |
| ACAATAGGTGGAGAAGTTGG+TGG | - | chr6_1:4321819-4321838 | None:intergenic | 45.0% | |
| !!! | GGAGGTGTTTTCACAATAGG+TGG | - | chr6_1:4321831-4321850 | None:intergenic | 45.0% |
| TTGACTATTGGAGTAGGTGG+TGG | - | chr6_1:4321897-4321916 | None:intergenic | 45.0% | |
| GCAGATTGCATTCCACTATG+TGG | + | chr6_1:4322298-4322317 | Msa0870020:intron | 45.0% | |
| TGGCACCTATAACCACATAG+TGG | - | chr6_1:4322313-4322332 | None:intergenic | 45.0% | |
| !! | CATGCATGACTTGTTGTGAC+CGG | + | chr6_1:4322365-4322384 | Msa0870020:CDS | 45.0% |
| CTGTTACCATAAGTTCCTGG+AGG | - | chr6_1:4322403-4322422 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTGAAAATA+AGG | + | chr6_1:4321188-4321207 | Msa0870020:intron | 5.0% |
| GAAGCAGGGACAAGAAGGTA+TGG | - | chr6_1:4320385-4320404 | None:intergenic | 50.0% | |
| !! | TAGGACTTGGTGGAGCTGTA+GGG | - | chr6_1:4321545-4321564 | None:intergenic | 50.0% |
| !! | GGTGTTACTGTAGGACTTGG+TGG | - | chr6_1:4321555-4321574 | None:intergenic | 50.0% |
| !! | GGTGGTGTTACTGTAGGACT+TGG | - | chr6_1:4321558-4321577 | None:intergenic | 50.0% |
| !! | GGAGAAGGTGGTGTTACTGT+AGG | - | chr6_1:4321564-4321583 | None:intergenic | 50.0% |
| ! | GGTGATTTCACTGGTGTTGG+TGG | - | chr6_1:4321597-4321616 | None:intergenic | 50.0% |
| GGTGGTGATTTCACTGGTGT+TGG | - | chr6_1:4321600-4321619 | None:intergenic | 50.0% | |
| ATCACCTCCTTCACCACCAT+TGG | + | chr6_1:4321662-4321681 | Msa0870020:CDS | 50.0% | |
| ! | TGATCCAATGGTGGTGAAGG+AGG | - | chr6_1:4321669-4321688 | None:intergenic | 50.0% |
| GGTGGTGATTGATCCAATGG+TGG | - | chr6_1:4321678-4321697 | None:intergenic | 50.0% | |
| GGTTTCACTAGAGGAGGAGA+AGG | - | chr6_1:4321714-4321733 | None:intergenic | 50.0% | |
| ! | GGAGTTGGTTTCACTAGAGG+AGG | - | chr6_1:4321720-4321739 | None:intergenic | 50.0% |
| ! | GGTGGAGTTGGTTTCACTAG+AGG | - | chr6_1:4321723-4321742 | None:intergenic | 50.0% |
| ATCACCTCCTTCTCCTCCTT+TGG | + | chr6_1:4321752-4321771 | Msa0870020:CDS | 50.0% | |
| TTCACCAAAGGAGGAGAAGG+AGG | - | chr6_1:4321759-4321778 | None:intergenic | 50.0% | |
| ! | GGAGGAGTTTTCACCAAAGG+AGG | - | chr6_1:4321768-4321787 | None:intergenic | 50.0% |
| GGTGGTGCTTTGACAATAGG+TGG | - | chr6_1:4321801-4321820 | None:intergenic | 50.0% | |
| !! | ATTGGAGTAGGTGGTGGAGA+TGG | - | chr6_1:4321891-4321910 | None:intergenic | 50.0% |
| TGTGTCCCTCCAGGAACTTA+TGG | + | chr6_1:4322394-4322413 | Msa0870020:CDS | 50.0% | |
| !! | GTAGGACTTGGTGGAGCTGT+AGG | - | chr6_1:4321546-4321565 | None:intergenic | 55.0% |
| AACACCACCTTCTCCGGTGA+AGG | + | chr6_1:4321569-4321588 | Msa0870020:CDS | 55.0% | |
| !! | GGTGGTGTTGGTTTCACTGG+TGG | - | chr6_1:4321633-4321652 | None:intergenic | 55.0% |
| CTGGAGGGACACATTTGCAC+CGG | - | chr6_1:4322387-4322406 | None:intergenic | 55.0% | |
| !! | GGTGTTGGTGGTGCCTTCAC+CGG | - | chr6_1:4321585-4321604 | None:intergenic | 60.0% |
| GGTGGAGATGGAGCAACTGG+TGG | - | chr6_1:4321879-4321898 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAGATGGAGCAAC+TGG | - | chr6_1:4321882-4321901 | None:intergenic | 60.0% |
| CGGTGCAAATGTGTCCCTCC+AGG | + | chr6_1:4322385-4322404 | Msa0870020:CDS | 60.0% | |
| GGTGCCTTCACCGGAGAAGG+TGG | - | chr6_1:4321576-4321595 | None:intergenic | 65.0% | |
| GGTGGTGCCTTCACCGGAGA+AGG | - | chr6_1:4321579-4321598 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4320321 | 4322821 | 4320321 | ID=Msa0870020;Name=Msa0870020 |
| chr6_1 | mRNA | 4320321 | 4322821 | 4320321 | ID=Msa0870020-mRNA-1;Parent=Msa0870020;Name=Msa0870020-mRNA-1;_AED=0.23;_eAED=0.23;_QI=89|1|1|1|1|1|4|335|223 |
| chr6_1 | exon | 4320321 | 4320463 | 4320321 | ID=Msa0870020-mRNA-1:exon:1380;Parent=Msa0870020-mRNA-1 |
| chr6_1 | exon | 4320667 | 4320699 | 4320667 | ID=Msa0870020-mRNA-1:exon:1381;Parent=Msa0870020-mRNA-1 |
| chr6_1 | exon | 4321528 | 4321927 | 4321528 | ID=Msa0870020-mRNA-1:exon:1382;Parent=Msa0870020-mRNA-1 |
| chr6_1 | exon | 4322302 | 4322821 | 4322302 | ID=Msa0870020-mRNA-1:exon:1383;Parent=Msa0870020-mRNA-1 |
| chr6_1 | five_prime_UTR | 4320321 | 4320409 | 4320321 | ID=Msa0870020-mRNA-1:five_prime_utr;Parent=Msa0870020-mRNA-1 |
| chr6_1 | CDS | 4320410 | 4320463 | 4320410 | ID=Msa0870020-mRNA-1:cds;Parent=Msa0870020-mRNA-1 |
| chr6_1 | CDS | 4320667 | 4320699 | 4320667 | ID=Msa0870020-mRNA-1:cds;Parent=Msa0870020-mRNA-1 |
| chr6_1 | CDS | 4321528 | 4321927 | 4321528 | ID=Msa0870020-mRNA-1:cds;Parent=Msa0870020-mRNA-1 |
| chr6_1 | CDS | 4322302 | 4322486 | 4322302 | ID=Msa0870020-mRNA-1:cds;Parent=Msa0870020-mRNA-1 |
| chr6_1 | three_prime_UTR | 4322487 | 4322821 | 4322487 | ID=Msa0870020-mRNA-1:three_prime_utr;Parent=Msa0870020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
