AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050530 MtrunA17_Chr1g0149101 91.638 873 39 7 1 845 1 867 0.0 1556
Msa0050530 MtrunA17_Chr5g0394661 29.697 660 376 19 37 639 21 649 2.54e-65 233
Msa0050530 MtrunA17_Chr8g0390351 41.040 173 90 6 449 615 52 218 3.51e-29 123
Msa0050530 MtrunA17_Chr3g0139951 38.172 186 106 5 419 601 90 269 1.22e-28 119
Msa0050530 MtrunA17_Chr6g0485811 47.727 132 60 3 476 604 128 253 1.25e-28 122
Msa0050530 MtrunA17_Chr1g0158111 82.258 62 11 0 402 463 5 66 9.40e-28 107
Msa0050530 MtrunA17_Chr1g0205031 37.008 127 78 1 478 604 407 531 6.88e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050530 AT3G22780.1 33.396 536 246 19 303 823 254 693 4.21e-61 220
Msa0050530 AT3G22760.2 39.542 306 145 8 311 616 77 342 1.80e-52 191
Msa0050530 AT3G22760.1 39.542 306 145 8 311 616 200 465 1.27e-51 191
Msa0050530 AT4G14770.1 39.394 297 138 8 310 604 245 501 5.60e-51 191
Msa0050530 AT4G14770.1 27.300 337 181 12 543 823 344 672 1.19e-14 78.6
Msa0050530 AT4G14770.3 39.394 297 138 8 310 604 226 482 5.98e-51 190
Msa0050530 AT4G14770.3 27.976 336 180 13 543 823 325 653 1.19e-14 78.6
Msa0050530 AT4G14770.2 39.394 297 138 8 310 604 225 481 6.31e-51 190
Msa0050530 AT4G14770.2 27.976 336 180 13 543 823 324 652 1.13e-14 78.6
Msa0050530 AT3G04850.1 32.938 337 171 8 289 601 271 576 4.66e-46 176
Msa0050530 AT5G25790.3 41.436 181 87 8 437 613 59 224 2.74e-30 125
Msa0050530 AT5G25790.1 40.437 183 90 7 437 613 59 228 3.78e-30 125
Msa0050530 AT5G25790.2 40.437 183 90 7 437 613 59 228 4.41e-30 125
Msa0050530 AT2G20110.3 46.099 141 67 4 476 612 119 254 6.04e-30 125
Msa0050530 AT2G20110.1 46.099 141 67 4 476 612 119 254 7.24e-30 125
Msa0050530 AT2G20110.2 46.099 141 67 4 476 612 119 254 1.20e-29 125
Msa0050530 AT4G29000.1 44.366 142 68 5 476 612 132 267 6.56e-28 120
Msa0050530 AT3G16160.1 46.774 124 60 3 476 599 66 183 1.05e-24 107

Find 233 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTAGATTGTTCCATTTC+TGG 0.116107 1_2:+4441650 None:intergenic
TCCCTCTTCTTCAATCTATT+TGG 0.177641 1_2:-4437168 Msa0050530:three_prime_UTR
CGTAGACGCTGCCTACAATT+TGG 0.186201 1_2:-4440225 Msa0050530:CDS
TGCGGTATTCGCCAGTTATC+TGG 0.216353 1_2:-4437689 Msa0050530:CDS
GAAGCCTTGACAGGCTTTAT+TGG 0.243588 1_2:+4442100 None:intergenic
AGCATCTGTCGATGAATATT+TGG 0.259084 1_2:-4441708 Msa0050530:CDS
ATGTTTCTGTATCTGATAAA+TGG 0.260838 1_2:+4441884 None:intergenic
GTGGAGGAGAAACTCTCTTT+TGG 0.268257 1_2:+4437507 None:intergenic
TTTGTTGGAGGAATCTAATA+TGG 0.270000 1_2:-4441531 Msa0050530:CDS
AACACGGCCATCCCTCTTAA+AGG 0.270855 1_2:+4436914 None:intergenic
TTCTCCCCTTCAATTGTTGC+AGG 0.272545 1_2:+4441476 None:intergenic
GAGGGATGGCCGTGTTAATT+AGG 0.288571 1_2:-4436907 Msa0050530:three_prime_UTR
CTATTTGGTGTAGAATGTTT+TGG 0.292638 1_2:-4437214 Msa0050530:three_prime_UTR
GCATTATTGAGTTGAGTTAT+AGG 0.292770 1_2:-4443204 Msa0050530:five_prime_UTR
TGGTAACAGAGTAGAATTTC+AGG 0.294634 1_2:-4439434 Msa0050530:CDS
GATTCATACAATAAGTAATC+TGG 0.298960 1_2:+4437103 None:intergenic
GAAGCTGCTTCCGTTGTTCT+TGG 0.299878 1_2:-4440201 Msa0050530:CDS
CATTATTGAGTTGAGTTATA+GGG 0.302617 1_2:-4443203 Msa0050530:five_prime_UTR
CATTGCAACAATGGTGTTAC+AGG 0.307892 1_2:+4438018 None:intergenic
TTCTTAATCTGAGAAGCTTC+TGG 0.309298 1_2:+4443115 None:intergenic
ATGCTGGAGGACTGCAGCTT+TGG 0.311010 1_2:+4441726 None:intergenic
GTAGACGCTGCCTACAATTT+GGG 0.311899 1_2:-4440224 Msa0050530:CDS
CTCTTATCAGGTGCATTTGC+CGG 0.312680 1_2:+4439826 None:intergenic
TGCTGGAGGACTGCAGCTTT+GGG 0.318678 1_2:+4441727 None:intergenic
CAGTAGATTGTTCCATTTCT+GGG 0.324248 1_2:+4441651 None:intergenic
CATGCGACACATGGGTTTCT+CGG 0.326256 1_2:-4442076 Msa0050530:CDS
ATCCTCAACTCCGTCCAATA+TGG 0.338930 1_2:-4439962 Msa0050530:CDS
TGATGTTCCACTGAATAATA+TGG 0.341118 1_2:-4439332 Msa0050530:intron
TTGCAATGGCAATGAGGATT+CGG 0.342240 1_2:-4437363 Msa0050530:CDS
CTTCAATCTATTTGGCAAAC+AGG 0.353004 1_2:-4437160 Msa0050530:three_prime_UTR
CTGGCGAATACCGCATCTAT+TGG 0.354125 1_2:+4437697 None:intergenic
GGGCGTACCCTCCTCTTATC+AGG 0.364892 1_2:+4439814 None:intergenic
TGCAGTTACTGTGATTGTTT+TGG 0.366597 1_2:-4439499 Msa0050530:intron
AGCAAATGCTTGTGGATTAC+GGG 0.369212 1_2:+4439378 None:intergenic
AACAGTTCTTCTTCTTCTGA+TGG 0.376879 1_2:-4443143 Msa0050530:exon
AGTGTTGACAAATCTCAAAA+AGG 0.377839 1_2:+4442129 None:intergenic
AAAAGATTGATCATCCATAT+TGG 0.378531 1_2:+4439948 None:intergenic
AGCTGCACATGGTACAATCT+TGG 0.387960 1_2:+4439354 None:intergenic
ATTTGCTTTCACAGACTTGA+TGG 0.391070 1_2:+4437538 None:intergenic
GAGCAAATGCTTGTGGATTA+CGG 0.393901 1_2:+4439377 None:intergenic
CTACTGAAGCATCAGTTTCA+TGG 0.398320 1_2:+4439905 None:intergenic
GGCAGAAAATTGTGACAATC+AGG 0.407491 1_2:-4438074 Msa0050530:CDS
CGAGACTCCATTTGAGCATA+TGG 0.410622 1_2:+4436938 None:intergenic
TGCAATGGCAATGAGGATTC+GGG 0.411133 1_2:-4437362 Msa0050530:CDS
AAGTTAGCGCTTGGGGTAAT+CGG 0.415030 1_2:+4437638 None:intergenic
CAACCCAATGCCTGGTGGCT+TGG 0.420396 1_2:+4440110 None:intergenic
GCGGTATTCGCCAGTTATCT+GGG 0.421949 1_2:-4437688 Msa0050530:CDS
AGTTCTTCTGCTATGTTACT+AGG 0.425346 1_2:+4441560 None:intergenic
CATCATCTAAGTTAGCGCTT+GGG 0.426755 1_2:+4437630 None:intergenic
TGTTCCATTTCTGGGTTGAC+TGG 0.428222 1_2:+4441659 None:intergenic
TGATCCTATCCAGGCTGTTA+AGG 0.432469 1_2:-4441166 Msa0050530:CDS
GAAAATCCTGCAACAATTGA+AGG 0.434474 1_2:-4441482 Msa0050530:CDS
ACTTTGCACCCTGCTTGCCT+TGG 0.435412 1_2:+4437870 None:intergenic
AATGATGTATACTTGAACTT+GGG 0.435796 1_2:+4443018 None:intergenic
CGGATTGGATCAAGCTCCTC+AGG 0.435804 1_2:-4437470 Msa0050530:CDS
GCTAACGTTGGATGCTCGAC+TGG 0.440058 1_2:-4439038 Msa0050530:CDS
TGCCCTCAATGTGTGTATAA+TGG 0.440939 1_2:-4437298 Msa0050530:three_prime_UTR
GTATCCAGTCAACCCAGAAA+TGG 0.441055 1_2:-4441663 Msa0050530:CDS
TGTTTCTGTATCTGATAAAT+GGG 0.441713 1_2:+4441885 None:intergenic
GAAGCTTCCTTCAATACATC+AGG 0.449228 1_2:+4437566 None:intergenic
CGAGTATTGTGTTTCACGGT+GGG 0.450483 1_2:+4442006 None:intergenic
GATGGATGTATGAATGTCTT+TGG 0.451729 1_2:-4439005 Msa0050530:CDS
ATGGAGTCTCGTCCTTTAAG+AGG 0.457164 1_2:-4436926 Msa0050530:three_prime_UTR
TGAAACACCTGATGTATTGA+AGG 0.458665 1_2:-4437573 Msa0050530:CDS
TTCTTACAGTTGCACGTCTT+AGG 0.458861 1_2:+4439617 None:intergenic
TGGATGACAAACTGCACAAA+AGG 0.461259 1_2:-4438095 Msa0050530:CDS
TTTGTATGTATCAGGCTTGA+AGG 0.461411 1_2:-4441910 Msa0050530:intron
TCATCATCTAAGTTAGCGCT+TGG 0.462532 1_2:+4437629 None:intergenic
TTTCCAAGCCACCAGGCATT+GGG 0.462604 1_2:-4440113 Msa0050530:CDS
GTTTCCAAGCCACCAGGCAT+TGG 0.462633 1_2:-4440114 Msa0050530:CDS
TCGATGGATTCTGTCAAGAT+AGG 0.463592 1_2:+4439856 None:intergenic
TACGGATGCCATGATACTTT+AGG 0.463804 1_2:+4440244 None:intergenic
TTTCAAATTCCTTAACAGCC+TGG 0.465100 1_2:+4441157 None:intergenic
AAATATTCATCGACAGATGC+TGG 0.465549 1_2:+4441710 None:intergenic
AGGATTGGTGATGGCGGTGG+CGG 0.467054 1_2:+4443054 None:intergenic
TTGATCCAATCCGAAGTAGA+TGG 0.467929 1_2:+4437480 None:intergenic
TCTCAAGAGCGCATAAACTT+AGG 0.471873 1_2:-4441434 Msa0050530:CDS
GCTGCACATGGTACAATCTT+GGG 0.476181 1_2:+4439355 None:intergenic
ATAATGGTTGGCATCTTGTC+TGG 0.477239 1_2:-4437282 Msa0050530:three_prime_UTR
TTTCCGAGTATTGTGTTTCA+CGG 0.478137 1_2:+4442002 None:intergenic
CCTAGTTGTGCTTCAACTAC+AGG 0.478757 1_2:-4440057 Msa0050530:CDS
AAGCAGCTTCCCCAAATTGT+AGG 0.478821 1_2:+4440214 None:intergenic
TGCTGTTCCATATGCTCAAA+TGG 0.479425 1_2:-4436945 Msa0050530:three_prime_UTR
AATTTCAAGCTTCAGTGTGC+AGG 0.480226 1_2:-4441234 Msa0050530:intron
GGGGTCAACGGCGGGAATGA+AGG 0.482884 1_2:+4437407 None:intergenic
CAGCGCAAGGGGTCAACGGC+GGG 0.483041 1_2:+4437399 None:intergenic
GTTGAATTCCTCAGCATCTG+TGG 0.485615 1_2:+4439792 None:intergenic
ATAAACTTAGGCTCGAGTTC+AGG 0.488527 1_2:-4441422 Msa0050530:CDS
AGAATCCATCGACCTATATC+CGG 0.490265 1_2:-4439845 Msa0050530:CDS
TTAACAGCCTGGATAGGATC+AGG 0.491802 1_2:+4441168 None:intergenic
CAACATTGTTGAAGAAGGGT+TGG 0.492695 1_2:-4438115 Msa0050530:CDS
TTTGTCCAGCCAAGGCAAGC+AGG 0.495977 1_2:-4437879 Msa0050530:intron
TTGCCATGATTCACTTCCCC+AGG 0.497451 1_2:-4441375 Msa0050530:intron
GAGAGCAACATTGTTGAAGA+AGG 0.497547 1_2:-4438120 Msa0050530:CDS
AAATGATGTATACTTGAACT+TGG 0.498024 1_2:+4443017 None:intergenic
CTAATATGGGTCATCAAGAA+AGG 0.501632 1_2:-4441517 Msa0050530:CDS
ACAGGTGAGAGGTGATTTGC+TGG 0.503058 1_2:+4438036 None:intergenic
CGGCAAATGCACCTGATAAG+AGG 0.504086 1_2:-4439825 Msa0050530:CDS
AAAGAGGTTGCAATTGCAAA+AGG 0.504487 1_2:-4439190 Msa0050530:CDS
TTGTTGGAGGAATCTAATAT+GGG 0.507321 1_2:-4441530 Msa0050530:CDS
AGAGGGAGGTGTCACAGAAA+TGG 0.508989 1_2:+4437184 None:intergenic
AACAATCTACTGATGCGGTT+GGG 0.512016 1_2:-4441640 Msa0050530:CDS
ATTGATGCCTGATCCTATCC+AGG 0.512947 1_2:-4441175 Msa0050530:CDS
ATTCATACAATAAGTAATCT+GGG 0.514405 1_2:+4437104 None:intergenic
CAAATTGTAGGCAGCGTCTA+CGG 0.518260 1_2:+4440226 None:intergenic
ATCATCTAAGTTAGCGCTTG+GGG 0.519646 1_2:+4437631 None:intergenic
GAACAATCTACTGATGCGGT+TGG 0.524575 1_2:-4441641 Msa0050530:CDS
GGGCATTCGCATCATTCTTG+AGG 0.524817 1_2:+4441747 None:intergenic
TACCGCATCTATTGGAGAGT+TGG 0.524893 1_2:+4437705 None:intergenic
TGAATATTTGGCTGATCCCG+TGG 0.525204 1_2:-4441696 Msa0050530:CDS
TTGTCCAGCCAAGGCAAGCA+GGG 0.526069 1_2:-4437878 Msa0050530:intron
TTTAAATGCAACCCAATGCC+TGG 0.526474 1_2:+4440102 None:intergenic
GTCTCGTCCTTTAAGAGGGA+TGG 0.527022 1_2:-4436921 Msa0050530:three_prime_UTR
TCCTCAGGTGGCTTGAAAAG+TGG 0.529192 1_2:-4437455 Msa0050530:CDS
TGCCAAATAGATTGAAGAAG+AGG 0.530591 1_2:+4437166 None:intergenic
CAGAGCCATCTACTTCGGAT+TGG 0.530846 1_2:-4437485 Msa0050530:CDS
CATCTATTGGAGAGTTGGTA+TGG 0.533401 1_2:+4437710 None:intergenic
AGAAGGATTGGTGATGGCGG+TGG 0.534777 1_2:+4443051 None:intergenic
GCTGGAATCTTCTGTGGCGA+CGG 0.536040 1_2:-4439475 Msa0050530:CDS
ATATTAGATTCCTCCAACAA+AGG 0.536833 1_2:+4441533 None:intergenic
TTGAATTCCTCAGCATCTGT+GGG 0.538648 1_2:+4439793 None:intergenic
TACTCAGAGCATTGCAACAA+TGG 0.538876 1_2:+4438009 None:intergenic
CAGGCTAGCCTAAAGTATCA+TGG 0.540060 1_2:-4440252 Msa0050530:CDS
CAACCATTATACACACATTG+AGG 0.540740 1_2:+4437295 None:intergenic
TTTGCTTTCACAGACTTGAT+GGG 0.542250 1_2:+4437539 None:intergenic
CCACCGTGAAACACAATACT+CGG 0.542340 1_2:-4442005 Msa0050530:CDS
TTACCTCAGAACCATCTTGT+GGG 0.543543 1_2:+4441088 None:intergenic
GTTATAAACACCTCTGGCAG+TGG 0.544020 1_2:+4441790 None:intergenic
ACATGCTTCTAGCAATGAAA+GGG 0.544689 1_2:-4438142 Msa0050530:CDS
TCAACCATCCTAGCACCTCC+AGG 0.545986 1_2:-4439774 Msa0050530:CDS
GTCGCATGAGAAGCCTTGAC+AGG 0.546192 1_2:+4442091 None:intergenic
AATTCCTTAACAGCCTGGAT+AGG 0.546382 1_2:+4441162 None:intergenic
GTTGCACGTCTTAGGTCCAT+TGG 0.547167 1_2:+4439625 None:intergenic
GTGACAGTTTCCAAGCCACC+AGG 0.548258 1_2:-4440120 Msa0050530:CDS
CTCCACAGAGCCATCTACTT+CGG 0.551057 1_2:-4437490 Msa0050530:CDS
AATGTCTTTGGCAAGAGAGA+AGG 0.551265 1_2:-4438993 Msa0050530:intron
AAGGCTTCTCATGCGACACA+TGG 0.551643 1_2:-4442085 Msa0050530:CDS
ATTCTCTGAATTTACTTGTG+AGG 0.552178 1_2:+4441113 None:intergenic
ATCCATATTGGACGGAGTTG+AGG 0.552766 1_2:+4439960 None:intergenic
AAGTAATACTACACATTGGA+AGG 0.552794 1_2:+4437051 None:intergenic
TTAAAATTTGATAGGAGTGA+CGG 0.554336 1_2:-4441584 Msa0050530:intron
CAGGTGCATTTGCCGGATAT+AGG 0.554569 1_2:+4439833 None:intergenic
CAGGTGGCTTGAAAAGTGGC+AGG 0.557391 1_2:-4437451 Msa0050530:CDS
AACCATTATACACACATTGA+GGG 0.557674 1_2:+4437296 None:intergenic
CCTGTAGTTGAAGCACAACT+AGG 0.562369 1_2:+4440057 None:intergenic
ATTTGTCAAAAGGCTAACGT+TGG 0.564831 1_2:-4439050 Msa0050530:intron
CGGTATTCGCCAGTTATCTG+GGG 0.571016 1_2:-4437687 Msa0050530:CDS
TTTGGTGCTGGAATCTTCTG+TGG 0.572134 1_2:-4439481 Msa0050530:CDS
GGCGACGGTTGTGCTTGCGA+AGG 0.572382 1_2:-4439460 Msa0050530:CDS
AACGTAGGAGACAACAGTCT+TGG 0.572639 1_2:-4441853 Msa0050530:CDS
GCCAAATAGATTGAAGAAGA+GGG 0.573771 1_2:+4437167 None:intergenic
ATCTTGGGAGCAAATGCTTG+TGG 0.574082 1_2:+4439370 None:intergenic
AAAATCCTGCAACAATTGAA+GGG 0.574303 1_2:-4441481 Msa0050530:CDS
TGGATACATTTGATCGTCCA+CGG 0.575264 1_2:+4441679 None:intergenic
GAATCAGCGCAAGGGGTCAA+CGG 0.575782 1_2:+4437395 None:intergenic
AACATGCTTCTAGCAATGAA+AGG 0.575833 1_2:-4438143 Msa0050530:CDS
AACATTCTACACCAAATAGC+GGG 0.579022 1_2:+4437218 None:intergenic
GATGTATACTTGAACTTGGG+GGG 0.580200 1_2:+4443021 None:intergenic
ATACAGAATCTGTTCTGAGA+AGG 0.581595 1_2:+4436994 None:intergenic
TTACCTGGGGAAGTGAATCA+TGG 0.582239 1_2:+4441372 None:intergenic
CCGAGTATTGTGTTTCACGG+TGG 0.583708 1_2:+4442005 None:intergenic
GATTCTAAAGTCCTTTGCAA+TGG 0.584197 1_2:-4437377 Msa0050530:CDS
AGAGCAACATTGTTGAAGAA+GGG 0.586625 1_2:-4438119 Msa0050530:CDS
GACTTTAGAATCAGCGCAAG+GGG 0.586639 1_2:+4437388 None:intergenic
TCAGAGAATATCCCACAAGA+TGG 0.588289 1_2:-4441099 Msa0050530:CDS
TAGACGCTGCCTACAATTTG+GGG 0.588410 1_2:-4440223 Msa0050530:CDS
GATTGATCATCCATATTGGA+CGG 0.592859 1_2:+4439952 None:intergenic
TGGAGTCTCGTCCTTTAAGA+GGG 0.594631 1_2:-4436925 Msa0050530:three_prime_UTR
ATAGGATCAGGCATCAATTG+AGG 0.595329 1_2:+4441180 None:intergenic
TGACAACACCGGCATCAGCT+AGG 0.595994 1_2:-4439217 Msa0050530:CDS
TTCTGTCAAGATAGGAGACT+CGG 0.595997 1_2:+4439864 None:intergenic
ATTTGAAAATTGCAGTGAGA+TGG 0.600065 1_2:-4441142 Msa0050530:CDS
TTCATCAGAAGGATTGGTGA+TGG 0.602391 1_2:+4443045 None:intergenic
ATTACCTCAGAACCATCTTG+TGG 0.602494 1_2:+4441087 None:intergenic
GGACTTTAGAATCAGCGCAA+GGG 0.602915 1_2:+4437387 None:intergenic
ATTGAGAGTTGAGGAGAGAG+AGG 0.603653 1_2:+4443078 None:intergenic
CTCAATGTGTGTATAATGGT+TGG 0.603810 1_2:-4437294 Msa0050530:three_prime_UTR
GCAACTGTTATAAACACCTC+TGG 0.607058 1_2:+4441784 None:intergenic
GGATACATTTGATCGTCCAC+GGG 0.608080 1_2:+4441680 None:intergenic
TTCTCAGCAGCCACTGCCAG+AGG 0.609773 1_2:-4441800 Msa0050530:CDS
AACTTAGATGATGAATCAGA+TGG 0.610248 1_2:-4437620 Msa0050530:CDS
GGTTGTGCTTGCGAAGGCTG+TGG 0.610748 1_2:-4439454 Msa0050530:CDS
CGAAGTAGATGGCTCTGTGG+AGG 0.611110 1_2:+4437491 None:intergenic
ATGATGTATACTTGAACTTG+GGG 0.612101 1_2:+4443019 None:intergenic
TCTGTAGATGAAGAACGTGT+AGG 0.614632 1_2:+4437755 None:intergenic
AGTCCTTTGCAATGGCAATG+AGG 0.616936 1_2:-4437369 Msa0050530:CDS
GCATCAGCTAGGCACAAAAG+AGG 0.618145 1_2:-4439206 Msa0050530:CDS
GTCTCCAATAAAGCCTGTCA+AGG 0.618547 1_2:-4442104 Msa0050530:CDS
TATCCCACAAGATGGTTCTG+AGG 0.620911 1_2:-4441091 Msa0050530:intron
CTATTGGAGAGTTGGTATGG+TGG 0.623132 1_2:+4437713 None:intergenic
ATTGGATCAAGCTCCTCAGG+TGG 0.623354 1_2:-4437467 Msa0050530:CDS
AATCCTCATTGCCATTGCAA+AGG 0.624686 1_2:+4437366 None:intergenic
CGCGGAGACTTGAATACGAG+AGG 0.625882 1_2:+4442040 None:intergenic
TATAAAGTAATACTACACAT+TGG 0.626331 1_2:+4437047 None:intergenic
AGGACTTTAGAATCAGCGCA+AGG 0.627509 1_2:+4437386 None:intergenic
TCAGCGCAAGGGGTCAACGG+CGG 0.628739 1_2:+4437398 None:intergenic
TCTTATACCATATTATTCAG+TGG 0.629452 1_2:+4439325 None:intergenic
CAAATGCACCTGATAAGAGG+AGG 0.630195 1_2:-4439822 Msa0050530:CDS
CTTATTACTTCCAAGAACAA+CGG 0.633004 1_2:+4440191 None:intergenic
ACAAGTACTGATGATGCCAA+TGG 0.639150 1_2:-4439641 Msa0050530:CDS
CTTCATCTACAGAAAATGAG+TGG 0.639866 1_2:-4437745 Msa0050530:CDS
GTGAAACACAATACTCGGAA+AGG 0.645194 1_2:-4442000 Msa0050530:intron
AAATCCTGCAACAATTGAAG+GGG 0.646037 1_2:-4441480 Msa0050530:CDS
AGGCTTCTCATGCGACACAT+GGG 0.646230 1_2:-4442084 Msa0050530:CDS
GAGTATTGTGTTTCACGGTG+GGG 0.646389 1_2:+4442007 None:intergenic
ATCAGAAGGATTGGTGATGG+CGG 0.649908 1_2:+4443048 None:intergenic
GGTACGCCCCACAGATGCTG+AGG 0.649944 1_2:-4439800 Msa0050530:CDS
GGTGGCGGCATTGAGAGTTG+AGG 0.650716 1_2:+4443069 None:intergenic
TCGACTGGATGTCGATGTGA+TGG 0.651749 1_2:-4439023 Msa0050530:CDS
GAAACATCTCAAAGTAACGT+AGG 0.652192 1_2:-4441868 Msa0050530:CDS
AGTGGAACATCAGCTGCACA+TGG 0.663360 1_2:+4439343 None:intergenic
TGATGTATACTTGAACTTGG+GGG 0.665983 1_2:+4443020 None:intergenic
AATGGAACAATCTACTGATG+CGG 0.671669 1_2:-4441645 Msa0050530:CDS
TACCAACTCTCCAATAGATG+CGG 0.673526 1_2:-4437707 Msa0050530:CDS
CGGTGGGGAGCACTGATACG+CGG 0.675366 1_2:+4442022 None:intergenic
AAATGCACCTGATAAGAGGA+GGG 0.675925 1_2:-4439821 Msa0050530:CDS
ATTTGCCGGATATAGGTCGA+TGG 0.681858 1_2:+4439840 None:intergenic
AAACATTCTACACCAAATAG+CGG 0.685950 1_2:+4437217 None:intergenic
GGTATTCGCCAGTTATCTGG+GGG 0.691155 1_2:-4437686 Msa0050530:CDS
ACAGGTGTGAGATTATCAGA+TGG 0.691185 1_2:-4440039 Msa0050530:intron
TCTAAGTAGCCTAATTAACA+CGG 0.691450 1_2:+4436898 None:intergenic
AAATGCAACCCAATGCCTGG+TGG 0.691964 1_2:+4440105 None:intergenic
GGAGACTTGAATACGAGAGG+TGG 0.694779 1_2:+4442043 None:intergenic
AGATGTGAATATGACAACAC+CGG 0.696103 1_2:-4439228 Msa0050530:CDS
TTTGCATATAGTGGAAAACG+TGG 0.696559 1_2:-4439989 Msa0050530:intron
TGAATTCCTCAGCATCTGTG+GGG 0.698955 1_2:+4439794 None:intergenic
ATCCGAAGTAGATGGCTCTG+TGG 0.709057 1_2:+4437488 None:intergenic
ACAATGGTGTTACAGGTGAG+AGG 0.709448 1_2:+4438025 None:intergenic
AAATAGATTGAAGAAGAGGG+AGG 0.711927 1_2:+4437170 None:intergenic
GAATGTGCCAGACTGCTGCG+TGG 0.712112 1_2:+4437806 None:intergenic
GTTATAGGGAAATCGAATCG+AGG 0.718394 1_2:-4443189 Msa0050530:five_prime_UTR
GTAGTTGAAGCACAACTAGG+TGG 0.726466 1_2:+4440060 None:intergenic
TATTCATCGACAGATGCTGG+AGG 0.729564 1_2:+4441713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTATATTAAAATTTGAT+AGG - chr1_2:4438544-4438563 Msa0050530:intron 10.0%
!!! TATTTTAAATATTTGTCAAA+AGG - chr1_2:4441076-4441095 Msa0050530:intron 10.0%
!!! AAATACAATAACATAATTTT+TGG - chr1_2:4441633-4441652 Msa0050530:CDS 10.0%
!!! TTCTGTATATTTTATATTTT+TGG - chr1_2:4443157-4443176 Msa0050530:five_prime_UTR 10.0%
!!! TCTGTATATTTTATATTTTT+GGG - chr1_2:4443158-4443177 Msa0050530:five_prime_UTR 10.0%
!! ACACAATAAATGAAATAAAA+TGG + chr1_2:4437320-4437339 None:intergenic 15.0%
!! ATTCATCAAAAATGAATATA+AGG - chr1_2:4437395-4437414 Msa0050530:CDS 15.0%
!! TATATTTATAATGCTGATAT+AGG - chr1_2:4438810-4438829 Msa0050530:intron 15.0%
!! ATATTTATAATGCTGATATA+GGG - chr1_2:4438811-4438830 Msa0050530:intron 15.0%
!!! TAATTGATTTTTTTTCTTTC+AGG - chr1_2:4439068-4439087 Msa0050530:intron 15.0%
!!! CTTTTAGTTTTTTTAATCAT+TGG - chr1_2:4439254-4439273 Msa0050530:intron 15.0%
!!! AAATATCACCTAATTTTTTA+AGG + chr1_2:4440869-4440888 None:intergenic 15.0%
!!! TTTGTTTTAAAAGAAGTATT+AGG - chr1_2:4441500-4441519 Msa0050530:CDS 15.0%
!!! GAAATTTTAGAAACTAAATT+GGG + chr1_2:4441594-4441613 None:intergenic 15.0%
!!! AGAAATTTTAGAAACTAAAT+TGG + chr1_2:4441595-4441614 None:intergenic 15.0%
!! AATTATGTTATTGTATTTCA+GGG + chr1_2:4441631-4441650 None:intergenic 15.0%
!! AAATTATGTTATTGTATTTC+AGG + chr1_2:4441632-4441651 None:intergenic 15.0%
!!! AGCAATTTTTCTTAAATTTT+AGG - chr1_2:4441787-4441806 Msa0050530:intron 15.0%
!!! GCAATTTTTCTTAAATTTTA+GGG - chr1_2:4441788-4441807 Msa0050530:intron 15.0%
!!! CAATTTTTCTTAAATTTTAG+GGG - chr1_2:4441789-4441808 Msa0050530:intron 15.0%
!! TCTTTACGATTATTATGTTA+TGG - chr1_2:4437222-4437241 Msa0050530:three_prime_UTR 20.0%
!! TATAAGGTAATCAATTAGAT+CGG - chr1_2:4437411-4437430 Msa0050530:CDS 20.0%
!! TGGAATTATATTTGTTTGAT+TGG - chr1_2:4437689-4437708 Msa0050530:CDS 20.0%
!! CATTAAAATGCTTATCAATT+AGG - chr1_2:4437782-4437801 Msa0050530:CDS 20.0%
!! AAAAGTCAGCAATAATTTAT+TGG - chr1_2:4439698-4439717 Msa0050530:intron 20.0%
!!! ATGCAATATTTGGTAATATT+TGG + chr1_2:4440456-4440475 None:intergenic 20.0%
!!! ATTTAGAGCATATAGAAATA+TGG + chr1_2:4441022-4441041 None:intergenic 20.0%
!! AAAAAATATATTAGCAGACA+CGG + chr1_2:4441052-4441071 None:intergenic 20.0%
!!! ATAATTTTTGGTACTTCTTT+TGG - chr1_2:4441645-4441664 Msa0050530:CDS 20.0%
!!! CATATGTATTCATTTTAATG+TGG + chr1_2:4441692-4441711 None:intergenic 20.0%
!! CACATTAAAATGAATACATA+TGG - chr1_2:4441690-4441709 Msa0050530:CDS 20.0%
!! AAATAAATTCCTATAACATG+TGG + chr1_2:4441717-4441736 None:intergenic 20.0%
!!! TTTTTTAAATGCAGATTTTG+TGG - chr1_2:4441964-4441983 Msa0050530:intron 20.0%
!! ATTCATACAATAAGTAATCT+GGG + chr1_2:4443035-4443054 None:intergenic 20.0%
!! TATAAAGTAATACTACACAT+TGG + chr1_2:4443092-4443111 None:intergenic 20.0%
!!! CATTATTGAGTTGAGTTATA+GGG - chr1_2:4436933-4436952 Msa0050530:three_prime_UTR 25.0%
! AATGATGTATACTTGAACTT+GGG + chr1_2:4437121-4437140 None:intergenic 25.0%
! AAATGATGTATACTTGAACT+TGG + chr1_2:4437122-4437141 None:intergenic 25.0%
! GGGTAGCATAATTAATTAAT+TGG + chr1_2:4437155-4437174 None:intergenic 25.0%
! TTTATTGTGTTAGACATGTT+TGG - chr1_2:4437330-4437349 Msa0050530:exon 25.0%
! TCCAAAATGAAACAAAAAGT+AGG + chr1_2:4437376-4437395 None:intergenic 25.0%
! GTTCAAATTCTACTATGTTA+CGG - chr1_2:4437499-4437518 Msa0050530:CDS 25.0%
! TACAATGCAATGTCAAATAA+CGG + chr1_2:4437527-4437546 None:intergenic 25.0%
! TGACAAAATTTGTATGTATC+AGG - chr1_2:4438218-4438237 Msa0050530:intron 25.0%
!! TGTTTCTGTATCTGATAAAT+GGG + chr1_2:4438254-4438273 None:intergenic 25.0%
!! ATGTTTCTGTATCTGATAAA+TGG + chr1_2:4438255-4438274 None:intergenic 25.0%
! TTAAAATTTGATAGGAGTGA+CGG - chr1_2:4438552-4438571 Msa0050530:intron 25.0%
! AAAGTTCATATATTCATCAG+AGG + chr1_2:4439105-4439124 None:intergenic 25.0%
! ATAAACAAAATCATTCAGAG+AGG + chr1_2:4439162-4439181 None:intergenic 25.0%
!!! TCATTGATCTAGTTTGTTTA+TGG - chr1_2:4439363-4439382 Msa0050530:CDS 25.0%
! TTTAACAAAATTAGCAGAAG+TGG - chr1_2:4439414-4439433 Msa0050530:CDS 25.0%
! AACTTGATAAGCAGAAAAAT+GGG + chr1_2:4439502-4439521 None:intergenic 25.0%
! AAACTTGATAAGCAGAAAAA+TGG + chr1_2:4439503-4439522 None:intergenic 25.0%
!!! TTATCAAGTTTTGCTTTGTT+TGG - chr1_2:4439512-4439531 Msa0050530:intron 25.0%
! ATGCAAACTTATAGAAGATT+TGG + chr1_2:4440134-4440153 None:intergenic 25.0%
! TTCTATAAGTTTGCATATAG+TGG - chr1_2:4440138-4440157 Msa0050530:CDS 25.0%
! AAAAGATTGATCATCCATAT+TGG + chr1_2:4440191-4440210 None:intergenic 25.0%
! ATATAGAGCAATGCAATATT+TGG + chr1_2:4440466-4440485 None:intergenic 25.0%
! AATATTGCATTGCTCTATAT+AGG - chr1_2:4440466-4440485 Msa0050530:intron 25.0%
! ATTGCATATCATAGAAAGTA+AGG + chr1_2:4440591-4440610 None:intergenic 25.0%
! TCTTATACCATATTATTCAG+TGG + chr1_2:4440814-4440833 None:intergenic 25.0%
!! AAAATACTGTGAATGTTTTC+AGG - chr1_2:4440983-4441002 Msa0050530:intron 25.0%
!! TAAATGTTATGGATTGATGT+TGG - chr1_2:4441240-4441259 Msa0050530:intron 25.0%
!! AAATGTTATGGATTGATGTT+GGG - chr1_2:4441241-4441260 Msa0050530:intron 25.0%
! AAAAACTTAAAAGTTGTGCT+GGG + chr1_2:4441320-4441339 None:intergenic 25.0%
! AAAAAACTTAAAAGTTGTGC+TGG + chr1_2:4441321-4441340 None:intergenic 25.0%
! TATAGGAATTTATTTCAGCA+TGG - chr1_2:4441722-4441741 Msa0050530:CDS 25.0%
! TTTAAAAAAAGGGGTCATTT+GGG + chr1_2:4443004-4443023 None:intergenic 25.0%
!! GAACCTTTGTTTAAAAAAAG+GGG + chr1_2:4443013-4443032 None:intergenic 25.0%
!! GGAACCTTTGTTTAAAAAAA+GGG + chr1_2:4443014-4443033 None:intergenic 25.0%
! GATTCATACAATAAGTAATC+TGG + chr1_2:4443036-4443055 None:intergenic 25.0%
!! GCATTATTGAGTTGAGTTAT+AGG - chr1_2:4436932-4436951 Msa0050530:three_prime_UTR 30.0%
ATGATGTATACTTGAACTTG+GGG + chr1_2:4437120-4437139 None:intergenic 30.0%
!!! GCCTACTTTTTGTTTCATTT+TGG - chr1_2:4437372-4437391 Msa0050530:CDS 30.0%
AGAATATTGTTCCAGAGATA+TGG + chr1_2:4437557-4437576 None:intergenic 30.0%
AACAGTCAATTATCAAAGTG+CGG + chr1_2:4437655-4437674 None:intergenic 30.0%
!! AAATTCACTAGACTTGCTTT+TGG - chr1_2:4437715-4437734 Msa0050530:CDS 30.0%
TGGGTTAATTAACATAAGAG+AGG + chr1_2:4437746-4437765 None:intergenic 30.0%
ACATCTCTGAACAAAAAAGA+CGG + chr1_2:4437857-4437876 None:intergenic 30.0%
!! CATTTCTAGTATCACGAAAA+AGG - chr1_2:4437941-4437960 Msa0050530:intron 30.0%
! GTGTTGACAAATCTCAAAAA+GGG + chr1_2:4438009-4438028 None:intergenic 30.0%
!! AGTGTTGACAAATCTCAAAA+AGG + chr1_2:4438010-4438029 None:intergenic 30.0%
ATATTAGATTCCTCCAACAA+AGG + chr1_2:4438606-4438625 None:intergenic 30.0%
TTTGTTGGAGGAATCTAATA+TGG - chr1_2:4438605-4438624 Msa0050530:intron 30.0%
TTGTTGGAGGAATCTAATAT+GGG - chr1_2:4438606-4438625 Msa0050530:intron 30.0%
AAAATCCTGCAACAATTGAA+GGG - chr1_2:4438655-4438674 Msa0050530:intron 30.0%
ATTTGAAAATTGCAGTGAGA+TGG - chr1_2:4438994-4439013 Msa0050530:CDS 30.0%
ATTCTCTGAATTTACTTGTG+AGG + chr1_2:4439026-4439045 None:intergenic 30.0%
! CTAAATACTAGTCTCTTTAG+AGG - chr1_2:4439207-4439226 Msa0050530:CDS 30.0%
!! ACATGTATTTTGTTTGCACT+TGG - chr1_2:4439310-4439329 Msa0050530:intron 30.0%
! TGCATATTTCTGCATAAGAT+AGG - chr1_2:4439442-4439461 Msa0050530:CDS 30.0%
ACTTGATAAGCAGAAAAATG+GGG + chr1_2:4439501-4439520 None:intergenic 30.0%
! GCAATAATTTATTGGCTACA+AGG - chr1_2:4439706-4439725 Msa0050530:intron 30.0%
!!! AGAGTTGCATTTTGATTATC+AGG - chr1_2:4439792-4439811 Msa0050530:CDS 30.0%
ATAATTGTTACAGTCAATGC+AGG - chr1_2:4439865-4439884 Msa0050530:CDS 30.0%
CTTATTACTTCCAAGAACAA+CGG + chr1_2:4439948-4439967 None:intergenic 30.0%
AGATTATCAGATGGTATACA+GGG - chr1_2:4440106-4440125 Msa0050530:CDS 30.0%
!! CATGATAACTAACTTTTTCC+TGG + chr1_2:4440383-4440402 None:intergenic 30.0%
GTTATCATGATCTTTCTCAT+AGG - chr1_2:4440394-4440413 Msa0050530:intron 30.0%
ATTTGGTAAAACTAGCAAAC+AGG + chr1_2:4440439-4440458 None:intergenic 30.0%
TGATGTTCCACTGAATAATA+TGG - chr1_2:4440804-4440823 Msa0050530:intron 30.0%
TCTGGTCAGTATAAATGTTA+TGG - chr1_2:4441229-4441248 Msa0050530:intron 30.0%
ACCAAATACTAGTCCTTATA+AGG - chr1_2:4441277-4441296 Msa0050530:intron 30.0%
! TCCTTATAAGGACTAGTATT+TGG + chr1_2:4441281-4441300 None:intergenic 30.0%
! CCTCAACAATTTTCCTTATA+AGG + chr1_2:4441293-4441312 None:intergenic 30.0%
CCTTATAAGGAAAATTGTTG+AGG - chr1_2:4441290-4441309 Msa0050530:intron 30.0%
!! TAAATTTTAGGGGTTCAAAC+TGG - chr1_2:4441799-4441818 Msa0050530:CDS 30.0%
AACTTAGATGATGAATCAGA+TGG - chr1_2:4442516-4442535 Msa0050530:intron 30.0%
AACCATTATACACACATTGA+GGG + chr1_2:4442843-4442862 None:intergenic 30.0%
!!! TTTTTTTTCTTCCCGCTATT+TGG - chr1_2:4442907-4442926 Msa0050530:intron 30.0%
AAACATTCTACACCAAATAG+CGG + chr1_2:4442922-4442941 None:intergenic 30.0%
!!! CTATTTGGTGTAGAATGTTT+TGG - chr1_2:4442922-4442941 Msa0050530:intron 30.0%
GTTTAAAAAAAGGGGTCATT+TGG + chr1_2:4443005-4443024 None:intergenic 30.0%
!!! TGACCCCTTTTTTTAAACAA+AGG - chr1_2:4443007-4443026 Msa0050530:intron 30.0%
! GGGAACCTTTGTTTAAAAAA+AGG + chr1_2:4443015-4443034 None:intergenic 30.0%
AAGTAATACTACACATTGGA+AGG + chr1_2:4443088-4443107 None:intergenic 30.0%
AACAGTTCTTCTTCTTCTGA+TGG - chr1_2:4436993-4437012 Msa0050530:three_prime_UTR 35.0%
TTCTTAATCTGAGAAGCTTC+TGG + chr1_2:4437024-4437043 None:intergenic 35.0%
TGATGTATACTTGAACTTGG+GGG + chr1_2:4437119-4437138 None:intergenic 35.0%
ACTCTGTCTGTCTTTATGTT+TGG - chr1_2:4437272-4437291 Msa0050530:three_prime_UTR 35.0%
TGATTCTTAGATCCTTAGAC+CGG - chr1_2:4437435-4437454 Msa0050530:CDS 35.0%
ACTATGGAAAACTCAGTATC+CGG + chr1_2:4437457-4437476 None:intergenic 35.0%
!! CTATTTTTCGCAATCCACTA+TGG + chr1_2:4437473-4437492 None:intergenic 35.0%
TGTACTGAATACCATATCTC+TGG - chr1_2:4437543-4437562 Msa0050530:CDS 35.0%
ATGCAAAAATGAGACAGTGT+GGG + chr1_2:4437765-4437784 None:intergenic 35.0%
AATGCAAAAATGAGACAGTG+TGG + chr1_2:4437766-4437785 None:intergenic 35.0%
! TTTCCGAGTATTGTGTTTCA+CGG + chr1_2:4438137-4438156 None:intergenic 35.0%
TTTGTATGTATCAGGCTTGA+AGG - chr1_2:4438226-4438245 Msa0050530:intron 35.0%
GAAACATCTCAAAGTAACGT+AGG - chr1_2:4438268-4438287 Msa0050530:intron 35.0%
AAATATTCATCGACAGATGC+TGG + chr1_2:4438429-4438448 None:intergenic 35.0%
AGCATCTGTCGATGAATATT+TGG - chr1_2:4438428-4438447 Msa0050530:intron 35.0%
CAGTAGATTGTTCCATTTCT+GGG + chr1_2:4438488-4438507 None:intergenic 35.0%
TCAGTAGATTGTTCCATTTC+TGG + chr1_2:4438489-4438508 None:intergenic 35.0%
AATGGAACAATCTACTGATG+CGG - chr1_2:4438491-4438510 Msa0050530:intron 35.0%
AGTTCTTCTGCTATGTTACT+AGG + chr1_2:4438579-4438598 None:intergenic 35.0%
! AGAAGAACTTTTGCCTTTGT+TGG - chr1_2:4438590-4438609 Msa0050530:intron 35.0%
CTAATATGGGTCATCAAGAA+AGG - chr1_2:4438619-4438638 Msa0050530:intron 35.0%
GAAAATCCTGCAACAATTGA+AGG - chr1_2:4438654-4438673 Msa0050530:intron 35.0%
AAATCCTGCAACAATTGAAG+GGG - chr1_2:4438656-4438675 Msa0050530:intron 35.0%
ACAATTGAAGGGGAGAAAAA+TGG - chr1_2:4438666-4438685 Msa0050530:intron 35.0%
GATCAATCAAAAGAGACTAG+AGG + chr1_2:4438877-4438896 None:intergenic 35.0%
TTTCAAATTCCTTAACAGCC+TGG + chr1_2:4438982-4439001 None:intergenic 35.0%
ACAAAATCATTCAGAGAGGA+GGG + chr1_2:4439158-4439177 None:intergenic 35.0%
AACAAAATCATTCAGAGAGG+AGG + chr1_2:4439159-4439178 None:intergenic 35.0%
! ACTAAAAGTGTATTCAAGCC+TGG + chr1_2:4439242-4439261 None:intergenic 35.0%
GTACTGTGCTCTTCTTTAAT+TGG + chr1_2:4439292-4439311 None:intergenic 35.0%
TTGATAAGCAGAAAAATGGG+GGG + chr1_2:4439499-4439518 None:intergenic 35.0%
CTTGATAAGCAGAAAAATGG+GGG + chr1_2:4439500-4439519 None:intergenic 35.0%
!!! TCAAGTTTTGCTTTGTTTGG+AGG - chr1_2:4439515-4439534 Msa0050530:intron 35.0%
GTTTGGAGGTTTCAAAATTG+TGG - chr1_2:4439529-4439548 Msa0050530:intron 35.0%
TGAGTCCATGATGTAATATC+AGG + chr1_2:4439605-4439624 None:intergenic 35.0%
GATATTACATCATGGACTCA+AGG - chr1_2:4439605-4439624 Msa0050530:CDS 35.0%
!! CTACAAGGTTTTAGTCATGT+AGG - chr1_2:4439721-4439740 Msa0050530:intron 35.0%
GTGTAATGGCATTATCTACT+TGG - chr1_2:4439758-4439777 Msa0050530:intron 35.0%
AACTTCAAGCAACGCAAAAA+TGG - chr1_2:4439988-4440007 Msa0050530:intron 35.0%
GAGATTATCAGATGGTATAC+AGG - chr1_2:4440105-4440124 Msa0050530:CDS 35.0%
GATTATCAGATGGTATACAG+GGG - chr1_2:4440107-4440126 Msa0050530:CDS 35.0%
! TTTGCATATAGTGGAAAACG+TGG - chr1_2:4440147-4440166 Msa0050530:CDS 35.0%
GATTGATCATCCATATTGGA+CGG + chr1_2:4440187-4440206 None:intergenic 35.0%
!! GATAACTAACTTTTTCCTGG+AGG + chr1_2:4440380-4440399 None:intergenic 35.0%
! TGCAGTTACTGTGATTGTTT+TGG - chr1_2:4440637-4440656 Msa0050530:intron 35.0%
TGGTAACAGAGTAGAATTTC+AGG - chr1_2:4440702-4440721 Msa0050530:intron 35.0%
!!! CCTAATTTTTTAAGGCTAGC+AGG + chr1_2:4440861-4440880 None:intergenic 35.0%
!! CCTGCTAGCCTTAAAAAATT+AGG - chr1_2:4440858-4440877 Msa0050530:intron 35.0%
AGATGTGAATATGACAACAC+CGG - chr1_2:4440908-4440927 Msa0050530:intron 35.0%
AAAGAGGTTGCAATTGCAAA+AGG - chr1_2:4440946-4440965 Msa0050530:intron 35.0%
ATTTGTCAAAAGGCTAACGT+TGG - chr1_2:4441086-4441105 Msa0050530:intron 35.0%
GATGGATGTATGAATGTCTT+TGG - chr1_2:4441131-4441150 Msa0050530:CDS 35.0%
!! ACACAGTTTAACTTGTTGTC+TGG - chr1_2:4441211-4441230 Msa0050530:CDS 35.0%
ACATATGGTCCACATGTTAT+AGG - chr1_2:4441705-4441724 Msa0050530:CDS 35.0%
TGAGAGACTAAACTGAAAGT+TGG - chr1_2:4441833-4441852 Msa0050530:CDS 35.0%
!! CTGAAAGTTGGTGTGAATTA+CGG - chr1_2:4441845-4441864 Msa0050530:CDS 35.0%
TATAGTTGACATCCACATGA+GGG - chr1_2:4441895-4441914 Msa0050530:CDS 35.0%
! AAATGCAGATTTTGTGGCAA+TGG - chr1_2:4441970-4441989 Msa0050530:intron 35.0%
AACATGCTTCTAGCAATGAA+AGG - chr1_2:4441993-4442012 Msa0050530:intron 35.0%
ACATGCTTCTAGCAATGAAA+GGG - chr1_2:4441994-4442013 Msa0050530:intron 35.0%
AGAGCAACATTGTTGAAGAA+GGG - chr1_2:4442017-4442036 Msa0050530:CDS 35.0%
ACAAATGCAAAAAGGCCAAT+CGG + chr1_2:4442242-4442261 None:intergenic 35.0%
!!! GCGTGGTTTTTTAGAAGATT+TGG + chr1_2:4442316-4442335 None:intergenic 35.0%
CTTCATCTACAGAAAATGAG+TGG - chr1_2:4442391-4442410 Msa0050530:intron 35.0%
TGAAACACCTGATGTATTGA+AGG - chr1_2:4442563-4442582 Msa0050530:intron 35.0%
TTTGCTTTCACAGACTTGAT+GGG + chr1_2:4442600-4442619 None:intergenic 35.0%
ATTTGCTTTCACAGACTTGA+TGG + chr1_2:4442601-4442620 None:intergenic 35.0%
!! GATTCTAAAGTCCTTTGCAA+TGG - chr1_2:4442759-4442778 Msa0050530:intron 35.0%
CAACCATTATACACACATTG+AGG + chr1_2:4442844-4442863 None:intergenic 35.0%
CTCAATGTGTGTATAATGGT+TGG - chr1_2:4442842-4442861 Msa0050530:intron 35.0%
AACATTCTACACCAAATAGC+GGG + chr1_2:4442921-4442940 None:intergenic 35.0%
AAATAGATTGAAGAAGAGGG+AGG + chr1_2:4442969-4442988 None:intergenic 35.0%
TCCCTCTTCTTCAATCTATT+TGG - chr1_2:4442968-4442987 Msa0050530:intron 35.0%
GCCAAATAGATTGAAGAAGA+GGG + chr1_2:4442972-4442991 None:intergenic 35.0%
TGCCAAATAGATTGAAGAAG+AGG + chr1_2:4442973-4442992 None:intergenic 35.0%
CTTCAATCTATTTGGCAAAC+AGG - chr1_2:4442976-4442995 Msa0050530:intron 35.0%
!! ATACAGAATCTGTTCTGAGA+AGG + chr1_2:4443145-4443164 None:intergenic 35.0%
GTTATAGGGAAATCGAATCG+AGG - chr1_2:4436947-4436966 Msa0050530:three_prime_UTR 40.0%
! TTCATCAGAAGGATTGGTGA+TGG + chr1_2:4437094-4437113 None:intergenic 40.0%
GATGTATACTTGAACTTGGG+GGG + chr1_2:4437118-4437137 None:intergenic 40.0%
TGTCAAGAACCCCAATCAAA+GGG + chr1_2:4437179-4437198 None:intergenic 40.0%
AAAACTCAGTATCCGGTCTA+AGG + chr1_2:4437450-4437469 None:intergenic 40.0%
! GGATACTGAGTTTTCCATAG+TGG - chr1_2:4437456-4437475 Msa0050530:CDS 40.0%
AACACAGCACTGTCAAATAG+TGG + chr1_2:4437592-4437611 None:intergenic 40.0%
ATTTGACAGTGCTGTGTTCA+TGG - chr1_2:4437594-4437613 Msa0050530:CDS 40.0%
! ACTGTTGTGAGAGACTTGTT+TGG - chr1_2:4437669-4437688 Msa0050530:CDS 40.0%
ATTAGGCGTTTGTGCATTGT+CGG - chr1_2:4437799-4437818 Msa0050530:CDS 40.0%
CTTGTCGTCTTCTTCATTTC+AGG - chr1_2:4437978-4437997 Msa0050530:intron 40.0%
GTGAAACACAATACTCGGAA+AGG - chr1_2:4438136-4438155 Msa0050530:CDS 40.0%
GCAACTGTTATAAACACCTC+TGG + chr1_2:4438355-4438374 None:intergenic 40.0%
TGGATACATTTGATCGTCCA+CGG + chr1_2:4438460-4438479 None:intergenic 40.0%
AACAATCTACTGATGCGGTT+GGG - chr1_2:4438496-4438515 Msa0050530:intron 40.0%
GTCATCATCACTAACTGAGT+CGG - chr1_2:4438518-4438537 Msa0050530:intron 40.0%
! AGAACTTTTGCCTTTGTTGG+AGG - chr1_2:4438593-4438612 Msa0050530:intron 40.0%
! GGAGAAAAATGGTGCTGAAT+TGG - chr1_2:4438677-4438696 Msa0050530:intron 40.0%
! TCTCAAGAGCGCATAAACTT+AGG - chr1_2:4438702-4438721 Msa0050530:intron 40.0%
ATAAACTTAGGCTCGAGTTC+AGG - chr1_2:4438714-4438733 Msa0050530:intron 40.0%
AATTTCAAGCTTCAGTGTGC+AGG - chr1_2:4438902-4438921 Msa0050530:intron 40.0%
ATAGGATCAGGCATCAATTG+AGG + chr1_2:4438959-4438978 None:intergenic 40.0%
AATTCCTTAACAGCCTGGAT+AGG + chr1_2:4438977-4438996 None:intergenic 40.0%
TCAGAGAATATCCCACAAGA+TGG - chr1_2:4439037-4439056 Msa0050530:CDS 40.0%
TTACCTCAGAACCATCTTGT+GGG + chr1_2:4439051-4439070 None:intergenic 40.0%
ATTACCTCAGAACCATCTTG+TGG + chr1_2:4439052-4439071 None:intergenic 40.0%
! CTTTAGAGGTTAATGACTCC+AGG - chr1_2:4439221-4439240 Msa0050530:CDS 40.0%
CGAGTCCTGATATTACATCA+TGG - chr1_2:4439597-4439616 Msa0050530:intron 40.0%
ACATCATGGACTCAAGGTTA+AGG - chr1_2:4439611-4439630 Msa0050530:CDS 40.0%
CATCATGGACTCAAGGTTAA+GGG - chr1_2:4439612-4439631 Msa0050530:CDS 40.0%
!! CAAGGTTAAGGGCATTTCTA+AGG - chr1_2:4439623-4439642 Msa0050530:CDS 40.0%
ATGAGACTACAGTGGTGTAA+TGG - chr1_2:4439744-4439763 Msa0050530:intron 40.0%
TACGGATGCCATGATACTTT+AGG + chr1_2:4439895-4439914 None:intergenic 40.0%
TTTAAATGCAACCCAATGCC+TGG + chr1_2:4440037-4440056 None:intergenic 40.0%
ACAGGTGTGAGATTATCAGA+TGG - chr1_2:4440097-4440116 Msa0050530:CDS 40.0%
! CTACTGAAGCATCAGTTTCA+TGG + chr1_2:4440234-4440253 None:intergenic 40.0%
TTCTGTCAAGATAGGAGACT+CGG + chr1_2:4440275-4440294 None:intergenic 40.0%
! TCGATGGATTCTGTCAAGAT+AGG + chr1_2:4440283-4440302 None:intergenic 40.0%
AGAATCCATCGACCTATATC+CGG - chr1_2:4440291-4440310 Msa0050530:intron 40.0%
AAATGCACCTGATAAGAGGA+GGG - chr1_2:4440315-4440334 Msa0050530:intron 40.0%
TTGAATTCCTCAGCATCTGT+GGG + chr1_2:4440346-4440365 None:intergenic 40.0%
!! ACAAGTACTGATGATGCCAA+TGG - chr1_2:4440495-4440514 Msa0050530:intron 40.0%
TTCTTACAGTTGCACGTCTT+AGG + chr1_2:4440522-4440541 None:intergenic 40.0%
!!! TACTGTGATTGTTTTGGTGC+TGG - chr1_2:4440643-4440662 Msa0050530:intron 40.0%
! AGCAAATGCTTGTGGATTAC+GGG + chr1_2:4440761-4440780 None:intergenic 40.0%
! GAGCAAATGCTTGTGGATTA+CGG + chr1_2:4440762-4440781 None:intergenic 40.0%
AATGTCTTTGGCAAGAGAGA+AGG - chr1_2:4441143-4441162 Msa0050530:CDS 40.0%
! TGTTATGGATTGATGTTGGG+AGG - chr1_2:4441244-4441263 Msa0050530:intron 40.0%
TACTGGCAGCATAAAGCAAA+GGG + chr1_2:4441446-4441465 None:intergenic 40.0%
TTACTGGCAGCATAAAGCAA+AGG + chr1_2:4441447-4441466 None:intergenic 40.0%
GTATAGTTGACATCCACATG+AGG - chr1_2:4441894-4441913 Msa0050530:CDS 40.0%
ATAGTTGACATCCACATGAG+GGG - chr1_2:4441896-4441915 Msa0050530:CDS 40.0%
GAGAGCAACATTGTTGAAGA+AGG - chr1_2:4442016-4442035 Msa0050530:CDS 40.0%
CAACATTGTTGAAGAAGGGT+TGG - chr1_2:4442021-4442040 Msa0050530:CDS 40.0%
TGGATGACAAACTGCACAAA+AGG - chr1_2:4442041-4442060 Msa0050530:CDS 40.0%
GGCAGAAAATTGTGACAATC+AGG - chr1_2:4442062-4442081 Msa0050530:CDS 40.0%
!! CATTGCAACAATGGTGTTAC+AGG + chr1_2:4442121-4442140 None:intergenic 40.0%
!! TACTCAGAGCATTGCAACAA+TGG + chr1_2:4442130-4442149 None:intergenic 40.0%
TTGGCTGGACAAATGCAAAA+AGG + chr1_2:4442250-4442269 None:intergenic 40.0%
! TTTTTGCATTTGTCCAGCCA+AGG - chr1_2:4442249-4442268 Msa0050530:intron 40.0%
TCTGTAGATGAAGAACGTGT+AGG + chr1_2:4442384-4442403 None:intergenic 40.0%
!! CATCTATTGGAGAGTTGGTA+TGG + chr1_2:4442429-4442448 None:intergenic 40.0%
TACCAACTCTCCAATAGATG+CGG - chr1_2:4442429-4442448 Msa0050530:intron 40.0%
ATCATCTAAGTTAGCGCTTG+GGG + chr1_2:4442508-4442527 None:intergenic 40.0%
CATCATCTAAGTTAGCGCTT+GGG + chr1_2:4442509-4442528 None:intergenic 40.0%
TCATCATCTAAGTTAGCGCT+TGG + chr1_2:4442510-4442529 None:intergenic 40.0%
GAAGCTTCCTTCAATACATC+AGG + chr1_2:4442573-4442592 None:intergenic 40.0%
! GGAGAAACTCTCTTTTGGAT+TGG + chr1_2:4442627-4442646 None:intergenic 40.0%
TTGATCCAATCCGAAGTAGA+TGG + chr1_2:4442659-4442678 None:intergenic 40.0%
AATCCTCATTGCCATTGCAA+AGG + chr1_2:4442773-4442792 None:intergenic 40.0%
TTGCAATGGCAATGAGGATT+CGG - chr1_2:4442773-4442792 Msa0050530:intron 40.0%
! GAGGGCAATATTTTGCTTTC+AGG + chr1_2:4442825-4442844 None:intergenic 40.0%
TGCCCTCAATGTGTGTATAA+TGG - chr1_2:4442838-4442857 Msa0050530:intron 40.0%
ATAATGGTTGGCATCTTGTC+TGG - chr1_2:4442854-4442873 Msa0050530:intron 40.0%
TGCTGTTCCATATGCTCAAA+TGG - chr1_2:4443191-4443210 Msa0050530:five_prime_UTR 40.0%
ATTGAGAGTTGAGGAGAGAG+AGG + chr1_2:4437061-4437080 None:intergenic 45.0%
!! ATCAGAAGGATTGGTGATGG+CGG + chr1_2:4437091-4437110 None:intergenic 45.0%
TCAAGAACCCCAATCAAAGG+GGG + chr1_2:4437177-4437196 None:intergenic 45.0%
GTCAAGAACCCCAATCAAAG+GGG + chr1_2:4437178-4437197 None:intergenic 45.0%
GTGTCAAGAACCCCAATCAA+AGG + chr1_2:4437180-4437199 None:intergenic 45.0%
GCTGTGTTCATGGACTTAAG+AGG - chr1_2:4437604-4437623 Msa0050530:CDS 45.0%
! TTTTACGCACTTGTGCGTTG+TGG - chr1_2:4437627-4437646 Msa0050530:CDS 45.0%
GTCTCCAATAAAGCCTGTCA+AGG - chr1_2:4438032-4438051 Msa0050530:CDS 45.0%
! GAAGCCTTGACAGGCTTTAT+TGG + chr1_2:4438039-4438058 None:intergenic 45.0%
! GAGTATTGTGTTTCACGGTG+GGG + chr1_2:4438132-4438151 None:intergenic 45.0%
! CGAGTATTGTGTTTCACGGT+GGG + chr1_2:4438133-4438152 None:intergenic 45.0%
CCACCGTGAAACACAATACT+CGG - chr1_2:4438131-4438150 Msa0050530:CDS 45.0%
AACGTAGGAGACAACAGTCT+TGG - chr1_2:4438283-4438302 Msa0050530:intron 45.0%
GTTATAAACACCTCTGGCAG+TGG + chr1_2:4438349-4438368 None:intergenic 45.0%
TATTCATCGACAGATGCTGG+AGG + chr1_2:4438426-4438445 None:intergenic 45.0%
TGAATATTTGGCTGATCCCG+TGG - chr1_2:4438440-4438459 Msa0050530:intron 45.0%
GGATACATTTGATCGTCCAC+GGG + chr1_2:4438459-4438478 None:intergenic 45.0%
GTATCCAGTCAACCCAGAAA+TGG - chr1_2:4438473-4438492 Msa0050530:intron 45.0%
! TGTTCCATTTCTGGGTTGAC+TGG + chr1_2:4438480-4438499 None:intergenic 45.0%
GAACAATCTACTGATGCGGT+TGG - chr1_2:4438495-4438514 Msa0050530:intron 45.0%
TTCTCCCCTTCAATTGTTGC+AGG + chr1_2:4438663-4438682 None:intergenic 45.0%
TTACCTGGGGAAGTGAATCA+TGG + chr1_2:4438767-4438786 None:intergenic 45.0%
AGCAAGAGCTTAGTTACCTG+GGG + chr1_2:4438780-4438799 None:intergenic 45.0%
CAGCAAGAGCTTAGTTACCT+GGG + chr1_2:4438781-4438800 None:intergenic 45.0%
ACAGCAAGAGCTTAGTTACC+TGG + chr1_2:4438782-4438801 None:intergenic 45.0%
ATTGATGCCTGATCCTATCC+AGG - chr1_2:4438961-4438980 Msa0050530:intron 45.0%
TTAACAGCCTGGATAGGATC+AGG + chr1_2:4438971-4438990 None:intergenic 45.0%
TGATCCTATCCAGGCTGTTA+AGG - chr1_2:4438970-4438989 Msa0050530:intron 45.0%
! TATCCCACAAGATGGTTCTG+AGG - chr1_2:4439045-4439064 Msa0050530:intron 45.0%
ATGGCCATTTGCATGCATCA+TGG - chr1_2:4439382-4439401 Msa0050530:CDS 45.0%
CATGTAGGATGAGACTACAG+TGG - chr1_2:4439736-4439755 Msa0050530:intron 45.0%
!! CAGGCTAGCCTAAAGTATCA+TGG - chr1_2:4439884-4439903 Msa0050530:CDS 45.0%
CAAATTGTAGGCAGCGTCTA+CGG + chr1_2:4439913-4439932 None:intergenic 45.0%
GTAGACGCTGCCTACAATTT+GGG - chr1_2:4439912-4439931 Msa0050530:CDS 45.0%
TAGACGCTGCCTACAATTTG+GGG - chr1_2:4439913-4439932 Msa0050530:CDS 45.0%
AAGCAGCTTCCCCAAATTGT+AGG + chr1_2:4439925-4439944 None:intergenic 45.0%
GTAGTTGAAGCACAACTAGG+TGG + chr1_2:4440079-4440098 None:intergenic 45.0%
CCTGTAGTTGAAGCACAACT+AGG + chr1_2:4440082-4440101 None:intergenic 45.0%
CCTAGTTGTGCTTCAACTAC+AGG - chr1_2:4440079-4440098 Msa0050530:CDS 45.0%
ATCCTCAACTCCGTCCAATA+TGG - chr1_2:4440174-4440193 Msa0050530:CDS 45.0%
ATCCATATTGGACGGAGTTG+AGG + chr1_2:4440179-4440198 None:intergenic 45.0%
ATTTGCCGGATATAGGTCGA+TGG + chr1_2:4440299-4440318 None:intergenic 45.0%
CTCTTATCAGGTGCATTTGC+CGG + chr1_2:4440313-4440332 None:intergenic 45.0%
CAAATGCACCTGATAAGAGG+AGG - chr1_2:4440314-4440333 Msa0050530:intron 45.0%
TGAATTCCTCAGCATCTGTG+GGG + chr1_2:4440345-4440364 None:intergenic 45.0%
GTTGAATTCCTCAGCATCTG+TGG + chr1_2:4440347-4440366 None:intergenic 45.0%
!!! AACTTTTTCCTGGAGGTGCT+AGG + chr1_2:4440373-4440392 None:intergenic 45.0%
!! TTTGGTGCTGGAATCTTCTG+TGG - chr1_2:4440655-4440674 Msa0050530:intron 45.0%
ATCTTGGGAGCAAATGCTTG+TGG + chr1_2:4440769-4440788 None:intergenic 45.0%
GCTGCACATGGTACAATCTT+GGG + chr1_2:4440784-4440803 None:intergenic 45.0%
AGCTGCACATGGTACAATCT+TGG + chr1_2:4440785-4440804 None:intergenic 45.0%
ACTTAAAAGTTGTGCTGGGC+TGG + chr1_2:4441316-4441335 None:intergenic 45.0%
!! TAGGGTTTGAGTTGAGGTTC+TGG + chr1_2:4441364-4441383 None:intergenic 45.0%
TCTAGCATTCTACCTGGACT+TGG + chr1_2:4441394-4441413 None:intergenic 45.0%
TCCAGGTAGAATGCTAGAGA+TGG - chr1_2:4441396-4441415 Msa0050530:CDS 45.0%
ACCATCTCTAGCATTCTACC+TGG + chr1_2:4441400-4441419 None:intergenic 45.0%
!! GCAAAGGGGTGTCATTTGTA+TGG + chr1_2:4441431-4441450 None:intergenic 45.0%
ACTGGCAGCATAAAGCAAAG+GGG + chr1_2:4441445-4441464 None:intergenic 45.0%
GCTGCCAGTAATAATCTCTG+CGG - chr1_2:4441456-4441475 Msa0050530:CDS 45.0%
TGCACCGCAGAGATTATTAC+TGG + chr1_2:4441463-4441482 None:intergenic 45.0%
! TAATCTCTGCGGTGCACTTT+TGG - chr1_2:4441467-4441486 Msa0050530:CDS 45.0%
!! ACAATGGTGTTACAGGTGAG+AGG + chr1_2:4442114-4442133 None:intergenic 45.0%
! GTCCTTTCATTTGTGCCGAT+TGG - chr1_2:4442224-4442243 Msa0050530:intron 45.0%
TAAAAAACCACGCAGCAGTC+TGG - chr1_2:4442323-4442342 Msa0050530:intron 45.0%
!! CTATTGGAGAGTTGGTATGG+TGG + chr1_2:4442426-4442445 None:intergenic 45.0%
TACCGCATCTATTGGAGAGT+TGG + chr1_2:4442434-4442453 None:intergenic 45.0%
AAGTTAGCGCTTGGGGTAAT+CGG + chr1_2:4442501-4442520 None:intergenic 45.0%
! GTGGAGGAGAAACTCTCTTT+TGG + chr1_2:4442632-4442651 None:intergenic 45.0%
!! GACTTTAGAATCAGCGCAAG+GGG + chr1_2:4442751-4442770 None:intergenic 45.0%
!! GGACTTTAGAATCAGCGCAA+GGG + chr1_2:4442752-4442771 None:intergenic 45.0%
!! AGGACTTTAGAATCAGCGCA+AGG + chr1_2:4442753-4442772 None:intergenic 45.0%
AGTCCTTTGCAATGGCAATG+AGG - chr1_2:4442767-4442786 Msa0050530:intron 45.0%
TGCAATGGCAATGAGGATTC+GGG - chr1_2:4442774-4442793 Msa0050530:intron 45.0%
CGAGACTCCATTTGAGCATA+TGG + chr1_2:4443201-4443220 None:intergenic 45.0%
ATGGAGTCTCGTCCTTTAAG+AGG - chr1_2:4443210-4443229 Msa0050530:five_prime_UTR 45.0%
! TGGAGTCTCGTCCTTTAAGA+GGG - chr1_2:4443211-4443230 Msa0050530:five_prime_UTR 45.0%
GGGGGATTCATCAGAAGGAT+TGG + chr1_2:4437100-4437119 None:intergenic 50.0%
ACTTGGGGGGATTCATCAGA+AGG + chr1_2:4437105-4437124 None:intergenic 50.0%
TATGCTACCCCCCCTTTGAT+TGG - chr1_2:4437165-4437184 Msa0050530:three_prime_UTR 50.0%
ATGCTACCCCCCCTTTGATT+GGG - chr1_2:4437166-4437185 Msa0050530:three_prime_UTR 50.0%
AAGAACCCCAATCAAAGGGG+GGG + chr1_2:4437175-4437194 None:intergenic 50.0%
CAAGAACCCCAATCAAAGGG+GGG + chr1_2:4437176-4437195 None:intergenic 50.0%
AAGGCTTCTCATGCGACACA+TGG - chr1_2:4438051-4438070 Msa0050530:CDS 50.0%
AGGCTTCTCATGCGACACAT+GGG - chr1_2:4438052-4438071 Msa0050530:CDS 50.0%
CATGCGACACATGGGTTTCT+CGG - chr1_2:4438060-4438079 Msa0050530:CDS 50.0%
GGAGACTTGAATACGAGAGG+TGG + chr1_2:4438096-4438115 None:intergenic 50.0%
! CCGAGTATTGTGTTTCACGG+TGG + chr1_2:4438134-4438153 None:intergenic 50.0%
GGGCATTCGCATCATTCTTG+AGG + chr1_2:4438392-4438411 None:intergenic 50.0%
TTGCCATGATTCACTTCCCC+AGG - chr1_2:4438761-4438780 Msa0050530:intron 50.0%
CCTGCCATGATGCATGCAAA+TGG + chr1_2:4439389-4439408 None:intergenic 50.0%
CCATTTGCATGCATCATGGC+AGG - chr1_2:4439386-4439405 Msa0050530:CDS 50.0%
CGTAGACGCTGCCTACAATT+TGG - chr1_2:4439911-4439930 Msa0050530:CDS 50.0%
GAAGCTGCTTCCGTTGTTCT+TGG - chr1_2:4439935-4439954 Msa0050530:CDS 50.0%
TTTCCAAGCCACCAGGCATT+GGG - chr1_2:4440023-4440042 Msa0050530:intron 50.0%
AAATGCAACCCAATGCCTGG+TGG + chr1_2:4440034-4440053 None:intergenic 50.0%
CAGGTGCATTTGCCGGATAT+AGG + chr1_2:4440306-4440325 None:intergenic 50.0%
CGGCAAATGCACCTGATAAG+AGG - chr1_2:4440311-4440330 Msa0050530:intron 50.0%
!!! TTTTCCTGGAGGTGCTAGGA+TGG + chr1_2:4440369-4440388 None:intergenic 50.0%
GTTGCACGTCTTAGGTCCAT+TGG + chr1_2:4440514-4440533 None:intergenic 50.0%
AGTGGAACATCAGCTGCACA+TGG + chr1_2:4440796-4440815 None:intergenic 50.0%
! CTTTTGTGCCTAGCTGATGC+CGG + chr1_2:4440930-4440949 None:intergenic 50.0%
GCATCAGCTAGGCACAAAAG+AGG - chr1_2:4440930-4440949 Msa0050530:intron 50.0%
TCGACTGGATGTCGATGTGA+TGG - chr1_2:4441113-4441132 Msa0050530:CDS 50.0%
!! TTCTACCTGGACTTGGTGGT+GGG + chr1_2:4441387-4441406 None:intergenic 50.0%
!! ATTCTACCTGGACTTGGTGG+TGG + chr1_2:4441388-4441407 None:intergenic 50.0%
AGCATTCTACCTGGACTTGG+TGG + chr1_2:4441391-4441410 None:intergenic 50.0%
!! GGTGCACTTTTGGAAGTGGT+GGG - chr1_2:4441477-4441496 Msa0050530:CDS 50.0%
! ACAGGTGAGAGGTGATTTGC+TGG + chr1_2:4442103-4442122 None:intergenic 50.0%
GGCCAATCGGCACAAATGAA+AGG + chr1_2:4442229-4442248 None:intergenic 50.0%
CTGGCGAATACCGCATCTAT+TGG + chr1_2:4442442-4442461 None:intergenic 50.0%
TGCGGTATTCGCCAGTTATC+TGG - chr1_2:4442447-4442466 Msa0050530:intron 50.0%
GCGGTATTCGCCAGTTATCT+GGG - chr1_2:4442448-4442467 Msa0050530:intron 50.0%
CGGTATTCGCCAGTTATCTG+GGG - chr1_2:4442449-4442468 Msa0050530:intron 50.0%
GGTATTCGCCAGTTATCTGG+GGG - chr1_2:4442450-4442469 Msa0050530:intron 50.0%
CTCCACAGAGCCATCTACTT+CGG - chr1_2:4442646-4442665 Msa0050530:intron 50.0%
! ATCCGAAGTAGATGGCTCTG+TGG + chr1_2:4442651-4442670 None:intergenic 50.0%
CAGAGCCATCTACTTCGGAT+TGG - chr1_2:4442651-4442670 Msa0050530:intron 50.0%
ATTGGATCAAGCTCCTCAGG+TGG - chr1_2:4442669-4442688 Msa0050530:intron 50.0%
TCCTCAGGTGGCTTGAAAAG+TGG - chr1_2:4442681-4442700 Msa0050530:intron 50.0%
!! AGAGGGAGGTGTCACAGAAA+TGG + chr1_2:4442955-4442974 None:intergenic 50.0%
! GTCTCGTCCTTTAAGAGGGA+TGG - chr1_2:4443215-4443234 Msa0050530:five_prime_UTR 50.0%
AACACGGCCATCCCTCTTAA+AGG + chr1_2:4443225-4443244 None:intergenic 50.0%
!! AGAAGGATTGGTGATGGCGG+TGG + chr1_2:4437088-4437107 None:intergenic 55.0%
TGCTACCCCCCCTTTGATTG+GGG - chr1_2:4437167-4437186 Msa0050530:three_prime_UTR 55.0%
GCGTTTGTGCATTGTCGGAC+TGG - chr1_2:4437804-4437823 Msa0050530:CDS 55.0%
GTCGCATGAGAAGCCTTGAC+AGG + chr1_2:4438048-4438067 None:intergenic 55.0%
CGCGGAGACTTGAATACGAG+AGG + chr1_2:4438099-4438118 None:intergenic 55.0%
TGCTGGAGGACTGCAGCTTT+GGG + chr1_2:4438412-4438431 None:intergenic 55.0%
ATGCTGGAGGACTGCAGCTT+TGG + chr1_2:4438413-4438432 None:intergenic 55.0%
GTGACAGTTTCCAAGCCACC+AGG - chr1_2:4440016-4440035 Msa0050530:intron 55.0%
GTTTCCAAGCCACCAGGCAT+TGG - chr1_2:4440022-4440041 Msa0050530:intron 55.0%
TCAACCATCCTAGCACCTCC+AGG - chr1_2:4440362-4440381 Msa0050530:intron 55.0%
GCTGGAATCTTCTGTGGCGA+CGG - chr1_2:4440661-4440680 Msa0050530:intron 55.0%
TGACAACACCGGCATCAGCT+AGG - chr1_2:4440919-4440938 Msa0050530:intron 55.0%
GCTAACGTTGGATGCTCGAC+TGG - chr1_2:4441098-4441117 Msa0050530:CDS 55.0%
!! GGTGGGTAGGGTTTGAGTTG+AGG + chr1_2:4441370-4441389 None:intergenic 55.0%
!! CTGCGGTGCACTTTTGGAAG+TGG - chr1_2:4441473-4441492 Msa0050530:CDS 55.0%
!! CGGTGCACTTTTGGAAGTGG+TGG - chr1_2:4441476-4441495 Msa0050530:CDS 55.0%
ACATCCACATGAGGGGAGAG+TGG - chr1_2:4441903-4441922 Msa0050530:intron 55.0%
CATCCACATGAGGGGAGAGT+GGG - chr1_2:4441904-4441923 Msa0050530:intron 55.0%
TTTGTCCAGCCAAGGCAAGC+AGG - chr1_2:4442257-4442276 Msa0050530:intron 55.0%
TTGTCCAGCCAAGGCAAGCA+GGG - chr1_2:4442258-4442277 Msa0050530:intron 55.0%
ACTTTGCACCCTGCTTGCCT+TGG + chr1_2:4442269-4442288 None:intergenic 55.0%
GAAGAGAGCCCCCAGATAAC+TGG + chr1_2:4442461-4442480 None:intergenic 55.0%
TATCTGGGGGCTCTCTTCGT+TGG - chr1_2:4442463-4442482 Msa0050530:intron 55.0%
! CGAAGTAGATGGCTCTGTGG+AGG + chr1_2:4442648-4442667 None:intergenic 55.0%
! CGGATTGGATCAAGCTCCTC+AGG - chr1_2:4442666-4442685 Msa0050530:intron 55.0%
!!! GCCACTTTTCAAGCCACCTG+AGG + chr1_2:4442685-4442704 None:intergenic 55.0%
CAGGTGGCTTGAAAAGTGGC+AGG - chr1_2:4442685-4442704 Msa0050530:intron 55.0%
GAATCAGCGCAAGGGGTCAA+CGG + chr1_2:4442744-4442763 None:intergenic 55.0%
! GGTGGCGGCATTGAGAGTTG+AGG + chr1_2:4437070-4437089 None:intergenic 60.0%
!! AGGATTGGTGATGGCGGTGG+CGG + chr1_2:4437085-4437104 None:intergenic 60.0%
TTCTCAGCAGCCACTGCCAG+AGG - chr1_2:4438336-4438355 Msa0050530:intron 60.0%
CAACCCAATGCCTGGTGGCT+TGG + chr1_2:4440029-4440048 None:intergenic 60.0%
GGGCGTACCCTCCTCTTATC+AGG + chr1_2:4440325-4440344 None:intergenic 60.0%
GGTTGTGCTTGCGAAGGCTG+TGG - chr1_2:4440682-4440701 Msa0050530:intron 60.0%
!! CCTGGACTTGGTGGTGGGTA+GGG + chr1_2:4441382-4441401 None:intergenic 60.0%
!! ACCTGGACTTGGTGGTGGGT+AGG + chr1_2:4441383-4441402 None:intergenic 60.0%
GAATGTGCCAGACTGCTGCG+TGG + chr1_2:4442333-4442352 None:intergenic 60.0%
!! CGGTGGGGAGCACTGATACG+CGG + chr1_2:4438117-4438136 None:intergenic 65.0%
GGTACGCCCCACAGATGCTG+AGG - chr1_2:4440336-4440355 Msa0050530:intron 65.0%
GGCGACGGTTGTGCTTGCGA+AGG - chr1_2:4440676-4440695 Msa0050530:intron 65.0%
CCCTACCCACCACCAAGTCC+AGG - chr1_2:4441379-4441398 Msa0050530:CDS 65.0%
GCACCCACTCTCCCCTCATG+TGG + chr1_2:4441910-4441929 None:intergenic 65.0%
TGCACCCTGCTTGCCTTGGC+TGG + chr1_2:4442265-4442284 None:intergenic 65.0%
GGGGTCAACGGCGGGAATGA+AGG + chr1_2:4442732-4442751 None:intergenic 65.0%
TCAGCGCAAGGGGTCAACGG+CGG + chr1_2:4442741-4442760 None:intergenic 65.0%
GGGGGCTCTCTTCGTTGGCG+CGG - chr1_2:4442468-4442487 Msa0050530:intron 70.0%
CAGCGCAAGGGGTCAACGGC+GGG + chr1_2:4442740-4442759 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4436907 4443251 4436907 ID=Msa0050530;Name=Msa0050530
chr1_2 mRNA 4436907 4443251 4436907 ID=Msa0050530-mRNA-1;Parent=Msa0050530;Name=Msa0050530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=105|0.76|0.64|1|0.69|0.71|14|430|845
chr1_2 exon 4436907 4437892 4436907 ID=Msa0050530-mRNA-1:exon:1172;Parent=Msa0050530-mRNA-1
chr1_2 exon 4438012 4438180 4438012 ID=Msa0050530-mRNA-1:exon:1171;Parent=Msa0050530-mRNA-1
chr1_2 exon 4438994 4439060 4438994 ID=Msa0050530-mRNA-1:exon:1170;Parent=Msa0050530-mRNA-1
chr1_2 exon 4439154 4439252 4439154 ID=Msa0050530-mRNA-1:exon:1169;Parent=Msa0050530-mRNA-1
chr1_2 exon 4439333 4439516 4439333 ID=Msa0050530-mRNA-1:exon:1168;Parent=Msa0050530-mRNA-1
chr1_2 exon 4439599 4439670 4439599 ID=Msa0050530-mRNA-1:exon:1167;Parent=Msa0050530-mRNA-1
chr1_2 exon 4439769 4440000 4439769 ID=Msa0050530-mRNA-1:exon:1166;Parent=Msa0050530-mRNA-1
chr1_2 exon 4440040 4440271 4440040 ID=Msa0050530-mRNA-1:exon:1165;Parent=Msa0050530-mRNA-1
chr1_2 exon 4441092 4441241 4441092 ID=Msa0050530-mRNA-1:exon:1164;Parent=Msa0050530-mRNA-1
chr1_2 exon 4441376 4441592 4441376 ID=Msa0050530-mRNA-1:exon:1163;Parent=Msa0050530-mRNA-1
chr1_2 exon 4441623 4441787 4441623 ID=Msa0050530-mRNA-1:exon:1162;Parent=Msa0050530-mRNA-1
chr1_2 exon 4441799 4441918 4441799 ID=Msa0050530-mRNA-1:exon:1161;Parent=Msa0050530-mRNA-1
chr1_2 exon 4442001 4442158 4442001 ID=Msa0050530-mRNA-1:exon:1160;Parent=Msa0050530-mRNA-1
chr1_2 exon 4443030 4443251 4443030 ID=Msa0050530-mRNA-1:exon:1159;Parent=Msa0050530-mRNA-1
chr1_2 five_prime_UTR 4443147 4443251 4443147 ID=Msa0050530-mRNA-1:five_prime_utr;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4443030 4443146 4443030 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4442001 4442158 4442001 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4441799 4441918 4441799 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4441623 4441787 4441623 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4441376 4441592 4441376 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4441092 4441241 4441092 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4440040 4440271 4440040 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4439769 4440000 4439769 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4439599 4439670 4439599 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4439333 4439516 4439333 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4439154 4439252 4439154 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4438994 4439060 4438994 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4438012 4438180 4438012 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 CDS 4437337 4437892 4437337 ID=Msa0050530-mRNA-1:cds;Parent=Msa0050530-mRNA-1
chr1_2 three_prime_UTR 4436907 4437336 4436907 ID=Msa0050530-mRNA-1:three_prime_utr;Parent=Msa0050530-mRNA-1
Gene Sequence

>Msa0050530

ATGGATTCTCCAGAAGCTTCTCAGATTAAGAACATTTCTTCTTCTTCCTCTCTCTCCTCAACTCTCAATGCCGCCACCGCCATCACCAATCCTTCTGATGAATCCCCCCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTGTCTCCAATAAAGCCTGTCAAGGCTTCTCATGCGACACATGGGTTTCTCGGACTCAATTCTCCACCTCTCGTATTCAAGTCTCCGCGTATCAGTGCTCCCCACCGTGAAACACAATACTCGGAAAGGCTTGAAGGTACCCATTTATCAGATACAGAAACATCTCAAAGTAACGTAGGAGACAACAGTCTTGGTGAAGCTCGTATTGATTTGAAGAAATTGAATTCTCAGCAGCCACTGCCAGAGGTTTGCTCAAAAAATTTTGACCTCAAGAATGATGCGAATGCCCAAAGCTGCAGTCCTCCAGCATCTGTCGATGAATATTTGGCTGATCCCGTGGACGATCAAATGTATCCAGTCAACCCAGAAATGGAACAATCTACTGATGCGGTTGGGTCATCATCACTAACTGAGAGTGACGGTCCTAGTAACATAGCAGAAGAACTTTTGCCTTTGTTGGAGGAATCTAATATGGGTCATCAAGAAAGGACAACATATGTTGAAAATCCTGCAACAATTGAAGGGGAGAAAAATGGTGCTGAATTGGTTTCTCAAGAGCGCATAAACTTAGGCTCGAGTTCAGGTGCAGATGTTTTTGATAAACAATATTGCCATGATTCACTTCCCCAGTGTGCAGGAAATGATCAACAGCATCAAAGTGACTGTGCACCTCAATTGATGCCTGATCCTATCCAGGCTGTTAAGGAATTTGAAAATTGCAGTGAGATGGTGTCATCCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGTTCTGAGGCTAGCCTAAAGTATCATGGCATCCGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCCGTTGTTCTTGGAAGTAATAAGTCTCATGTGAAATTGAATACAACTTCAAGCAACGCAAAAATGGTTTCTGTGACAGTTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTATAAATGCAATGCCACCTAGTTGTGCTTCAACTACAGGTGTGAGATTATCAGATGTGGAAAACGTGGCAAGATCCTCAACTCCGTCCAATATGGATGATCAATCTTTTATTGATACTAAGAATGAGAGCCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGACAGAATCCATCGACCTATATCCGGCAAATGCACCTGATAAGAGGAGGGTACGCCCCACAGATGCTGAGGAATTCAACCATCCTAGCACCTCCAGGAAAAAGAAGAAAACAAGTACTGATGATGCCAATGGACCTAAGACGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTACTGTGATTGTTTTGGTGCTGGAATCTTCTGTGGCGACGGTTGTGCTTGCGAAGGCTGTGGTAACAGAGTAGAATTTCAGGATAAAGTTGTTGAAACAAAACAGCAAATTGAATCCCGTAATCCACAAGCATTTGCTCCCAAGATTGTACCATGTGCAGCTGATGTTCCACTGAATAATATGGAAGATGTGAATATGACAACACCGGCATCAGCTAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACAAAAAAATACTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGACTGGATGTCGATGTGATGGATGTATGAATGTCTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCTAGCAATGAAAGGGAGAGCAACATTGTTGAAGAAGGGTTGGATGACAAACTGCACAAAAGGCAGAAAATTGTGACAATCAGGACAGACTTGTTACGACCAGCAAATCACCTCTCACCTGTAACACCATTGTTGCAATGCTCTGACCAAGGCAAGCAGGGTGCAAAGTCTAGACATACTTCTGCAAATTTGACCAAATCTTCTAAAAAACCACGCAGCAGTCTGGCACATTCGAAGTCGAATGATTCTCAAAAGAATGCACCTACACGTTCTTCATCTACAGAAAATGAGTGGATAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAGTTATCTGGGGGCTCTCTTCGTTGGCGCGGTAGTTCACCGATTACCCCAAGCGCTAACTTAGATGATGAATCAGATGGTAAGCTCTTTGACATTATAGAAGATGAAACACCTGATGTATTGAAGGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCAATCCAAAAGAGAGTTTCTCCTCCACAGAGCCATCTACTTCGGATTGGATCAAGCTCCTCAGGTGGCTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCATTCCCGCCGTTGACCCCTTGCGCTGATTCTAAAGTCCTTTGCAATGGCAATGAGGATTCGGGTAACAGCACAGATAAAGTGACATAA
Protein sequence

>Msa0050530

MDSPEASQIKNISSSSSLSSTLNAATAITNPSDESPQVQESPFLRFVNTLSPIKPVKASHATHGFLGLNSPPLVFKSPRISAPHRETQYSERLEGTHLSDTETSQSNVGDNSLGEARIDLKKLNSQQPLPEVCSKNFDLKNDANAQSCSPPASVDEYLADPVDDQMYPVNPEMEQSTDAVGSSSLTESDGPSNIAEELLPLLEESNMGHQERTTYVENPATIEGEKNGAELVSQERINLGSSSGADVFDKQYCHDSLPQCAGNDQQHQSDCAPQLMPDPIQAVKEFENCSEMVSSSQVNSENIPQDGSEASLKYHGIRRRCLQFGEAASVVLGSNKSHVKLNTTSSNAKMVSVTVSKPPGIGLHLNSIINAMPPSCASTTGVRLSDVENVARSSTPSNMDDQSFIDTKNESHETDASVVADSFISESPILTESIDLYPANAPDKRRVRPTDAEEFNHPSTSRKKKKTSTDDANGPKTCNCKKSKCLKLYCDCFGAGIFCGDGCACEGCGNRVEFQDKVVETKQQIESRNPQAFAPKIVPCAADVPLNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSTGCRCDGCMNVFGKREDFVAMEHASSNERESNIVEEGLDDKLHKRQKIVTIRTDLLRPANHLSPVTPLLQCSDQGKQGAKSRHTSANLTKSSKKPRSSLAHSKSNDSQKNAPTRSSSTENEWIDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPSANLDDESDGKLFDIIEDETPDVLKEASTPIKSVKANSPIQKRVSPPQSHLLRIGSSSSGGLKSGRKFILQSVPSFPPLTPCADSKVLCNGNEDSGNSTDKVT*