Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041910 | sp|Q948Z4|SNAK1_SOLTU | 71.233 | 73 | 19 | 1 | 18 | 90 | 18 | 88 | 5.53e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0041910 | 0.819489 | 1.130893e-52 | -8.615850e-47 |
| Msa0030070 | Msa0041910 | 0.808885 | 2.485902e-50 | -8.615850e-47 |
| Msa0033610 | Msa0041910 | 0.828749 | 7.561082e-55 | -8.615850e-47 |
| Msa0033640 | Msa0041910 | 0.801138 | 1.037231e-48 | -8.615850e-47 |
| Msa0041910 | Msa0050530 | 0.846734 | 1.803039e-59 | -8.615850e-47 |
| Msa0041910 | Msa0100600 | 0.841469 | 4.663196e-58 | -8.615850e-47 |
| Msa0041910 | Msa0100890 | 0.832321 | 1.010660e-55 | -8.615850e-47 |
| Msa0041910 | Msa0125590 | 0.808351 | 3.231998e-50 | -8.615850e-47 |
| Msa0041910 | Msa0136330 | 0.979254 | 1.442327e-147 | -8.615850e-47 |
| Msa0041910 | Msa0168380 | 0.821053 | 4.954389e-53 | -8.615850e-47 |
| Msa0041910 | Msa0179040 | 0.989289 | 1.731521e-177 | -8.615850e-47 |
| Msa0041910 | Msa0192050 | 0.810917 | 9.080270e-51 | -8.615850e-47 |
| Msa0041910 | Msa0385030 | 0.800466 | 1.422509e-48 | -8.615850e-47 |
| Msa0041910 | Msa0416210 | 0.853524 | 2.256870e-61 | -8.615850e-47 |
| Msa0041910 | Msa0433630 | 0.862024 | 6.788586e-64 | -8.615850e-47 |
| Msa0041910 | Msa0477480 | 0.817130 | 3.868512e-52 | -8.615850e-47 |
| Msa0041910 | Msa0514020 | 0.805764 | 1.140480e-49 | -8.615850e-47 |
| Msa0041910 | Msa0521510 | 0.864402 | 1.247821e-64 | -8.615850e-47 |
| Msa0041910 | Msa0521530 | 0.848451 | 6.078464e-60 | -8.615850e-47 |
| Msa0041910 | Msa0572360 | 0.817469 | 3.244176e-52 | -8.615850e-47 |
| Msa0041910 | Msa0572830 | 0.822681 | 2.079791e-53 | -8.615850e-47 |
| Msa0041910 | Msa0584530 | 0.801202 | 1.006574e-48 | -8.615850e-47 |
| Msa0041910 | Msa0618990 | 0.801945 | 7.085975e-49 | -8.615850e-47 |
| Msa0041910 | Msa0689830 | 0.840528 | 8.236802e-58 | -8.615850e-47 |
| Msa0041910 | Msa0705140 | 0.810008 | 1.427254e-50 | -8.615850e-47 |
| Msa0041910 | Msa0705180 | 0.816836 | 4.504206e-52 | -8.615850e-47 |
| Msa0041910 | Msa0707260 | 0.827412 | 1.586918e-54 | -8.615850e-47 |
| Msa0041910 | Msa0751720 | 0.802098 | 6.590215e-49 | -8.615850e-47 |
| Msa0041910 | Msa0767280 | 0.834787 | 2.448724e-56 | -8.615850e-47 |
| Msa0041910 | Msa0846900 | 0.858470 | 8.058351e-63 | -8.615850e-47 |
| Msa0041910 | Msa0856610 | 0.807770 | 4.297002e-50 | -8.615850e-47 |
| Msa0041910 | Msa0926310 | 0.827734 | 1.328416e-54 | -8.615850e-47 |
| Msa0041910 | Msa0930040 | 0.801277 | 9.712687e-49 | -8.615850e-47 |
| Msa0041910 | Msa1000780 | 0.827864 | 1.236001e-54 | -8.615850e-47 |
| Msa0041910 | Msa1021560 | 0.820806 | 5.645009e-53 | -8.615850e-47 |
| Msa0041910 | Msa1105580 | 0.800145 | 1.653251e-48 | -8.615850e-47 |
| Msa0041910 | Msa1124210 | 0.820523 | 6.556078e-53 | -8.615850e-47 |
| Msa0041910 | Msa1147560 | 0.801045 | 1.083545e-48 | -8.615850e-47 |
| Msa0041910 | Msa1148930 | 0.811980 | 5.337070e-51 | -8.615850e-47 |
| Msa0041910 | Msa1220580 | 0.804711 | 1.894907e-49 | -8.615850e-47 |
| Msa0041910 | Msa1282300 | 0.812035 | 5.191003e-51 | -8.615850e-47 |
| Msa0041910 | Msa1334560 | 0.801747 | 7.783105e-49 | -8.615850e-47 |
| Msa0041910 | Msa1339230 | 0.837530 | 4.922441e-57 | -8.615850e-47 |
| Msa0041910 | Msa1393560 | 0.803123 | 4.050616e-49 | -8.615850e-47 |
| Msa0041910 | Msa1399190 | 0.810944 | 8.960660e-51 | -8.615850e-47 |
| Msa0041910 | Msa1420830 | 0.806780 | 6.966138e-50 | -8.615850e-47 |
| Msa0041910 | Msa1463430 | 0.979741 | 1.222564e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041910 | MtrunA17_Chr1g0207611 | 98.889 | 90 | 1 | 0 | 1 | 90 | 1 | 90 | 2.02e-60 | 179 |
| Msa0041910 | MtrunA17_Chr1g0152851 | 64.835 | 91 | 31 | 1 | 1 | 90 | 1 | 91 | 2.74e-30 | 102 |
| Msa0041910 | MtrunA17_Chr3g0134511 | 67.692 | 65 | 21 | 0 | 26 | 90 | 21 | 85 | 4.01e-26 | 92.0 |
| Msa0041910 | MtrunA17_Chr5g0415001 | 45.161 | 93 | 47 | 2 | 1 | 90 | 1 | 92 | 9.31e-20 | 76.3 |
| Msa0041910 | MtrunA17_Chr5g0415091 | 59.016 | 61 | 25 | 0 | 30 | 90 | 28 | 88 | 1.31e-19 | 75.9 |
| Msa0041910 | MtrunA17_Chr5g0415111 | 42.683 | 82 | 45 | 1 | 9 | 90 | 4 | 83 | 2.30e-17 | 69.7 |
| Msa0041910 | MtrunA17_Chr5g0415051 | 47.761 | 67 | 35 | 0 | 24 | 90 | 5 | 71 | 3.51e-17 | 68.9 |
| Msa0041910 | MtrunA17_Chr3g0078781 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.78e-16 | 66.6 |
| Msa0041910 | MtrunA17_Chr5g0446671 | 53.333 | 60 | 28 | 0 | 31 | 90 | 6 | 65 | 2.87e-16 | 66.6 |
| Msa0041910 | MtrunA17_Chr6g0453241 | 34.951 | 103 | 48 | 2 | 7 | 90 | 5 | 107 | 5.95e-15 | 64.3 |
| Msa0041910 | MtrunA17_Chr1g0200531 | 37.500 | 96 | 53 | 1 | 2 | 90 | 5 | 100 | 1.15e-14 | 63.5 |
| Msa0041910 | MtrunA17_Chr1g0156601 | 35.354 | 99 | 51 | 1 | 5 | 90 | 3 | 101 | 1.79e-14 | 63.2 |
| Msa0041910 | MtrunA17_Chr7g0217311 | 46.774 | 62 | 33 | 0 | 29 | 90 | 48 | 109 | 2.01e-14 | 63.2 |
| Msa0041910 | MtrunA17_Chr5g0434631 | 41.558 | 77 | 41 | 1 | 18 | 90 | 20 | 96 | 3.19e-14 | 62.4 |
| Msa0041910 | MtrunA17_Chr3g0092361 | 33.696 | 92 | 46 | 1 | 14 | 90 | 12 | 103 | 3.31e-14 | 62.4 |
| Msa0041910 | MtrunA17_Chr3g0142671 | 32.653 | 98 | 51 | 1 | 8 | 90 | 6 | 103 | 1.46e-13 | 60.8 |
| Msa0041910 | MtrunA17_Chr7g0256821 | 42.857 | 63 | 36 | 0 | 28 | 90 | 58 | 120 | 1.67e-13 | 60.8 |
| Msa0041910 | MtrunA17_Chr8g0364311 | 45.902 | 61 | 32 | 1 | 31 | 90 | 52 | 112 | 1.71e-12 | 58.2 |
| Msa0041910 | MtrunA17_Chr1g0156621 | 40.000 | 75 | 40 | 1 | 21 | 90 | 26 | 100 | 2.84e-12 | 57.4 |
| Msa0041910 | MtrunA17_Chr6g0451481 | 47.541 | 61 | 31 | 1 | 31 | 90 | 159 | 219 | 3.04e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041910 | AT5G59845.1 | 60.440 | 91 | 33 | 2 | 1 | 90 | 1 | 89 | 3.97e-28 | 97.8 |
| Msa0041910 | AT2G39540.1 | 54.444 | 90 | 38 | 1 | 1 | 90 | 1 | 87 | 1.52e-26 | 93.6 |
| Msa0041910 | AT2G14900.1 | 69.492 | 59 | 18 | 0 | 32 | 90 | 50 | 108 | 4.46e-26 | 93.2 |
| Msa0041910 | AT1G10588.1 | 56.180 | 89 | 36 | 2 | 3 | 90 | 4 | 90 | 1.51e-25 | 91.3 |
| Msa0041910 | AT1G10588.2 | 53.933 | 89 | 37 | 2 | 3 | 90 | 4 | 89 | 3.51e-24 | 87.8 |
| Msa0041910 | AT1G74670.1 | 36.634 | 101 | 53 | 1 | 1 | 90 | 1 | 101 | 2.03e-16 | 68.2 |
| Msa0041910 | AT5G15230.1 | 30.189 | 106 | 58 | 1 | 1 | 90 | 1 | 106 | 2.61e-13 | 60.5 |
| Msa0041910 | AT4G09600.1 | 40.244 | 82 | 40 | 2 | 18 | 90 | 18 | 99 | 8.04e-13 | 58.9 |
| Msa0041910 | AT5G15230.2 | 44.262 | 61 | 34 | 0 | 30 | 90 | 23 | 83 | 4.62e-12 | 56.6 |
| Msa0041910 | AT1G22690.1 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa0041910 | AT1G22690.2 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
| Msa0041910 | AT1G22690.3 | 45.000 | 60 | 33 | 0 | 31 | 90 | 60 | 119 | 9.33e-11 | 54.3 |
Find 48 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTATGCTTCTCTTTCT+TGG | 0.113371 | 1_1:+72497676 | Msa0041910:CDS |
| TCACATTTATTGGTCTAAAA+TGG | 0.213982 | 1_1:-72498224 | None:intergenic |
| ACAATGTCTCTCACATTTAT+TGG | 0.225096 | 1_1:-72498234 | None:intergenic |
| CAGAGACAAGGTTAACAATA+AGG | 0.287897 | 1_1:+72497974 | Msa0041910:CDS |
| GCATGCAATGGTTTCAGTTC+TGG | 0.302247 | 1_1:-72497361 | None:intergenic |
| TGTGTTCCTTCTGGGACTTA+TGG | 0.316342 | 1_1:+72497927 | Msa0041910:CDS |
| GTGTTCCTTCTGGGACTTAT+GGG | 0.319469 | 1_1:+72497928 | Msa0041910:CDS |
| TAATTGACATCAAGGGCATT+TGG | 0.329972 | 1_1:-72498003 | None:intergenic |
| GAGTGCAAATGTGTTCCTTC+TGG | 0.347493 | 1_1:+72497918 | Msa0041910:CDS |
| CTTTAAAGATGGTGCCAACT+TGG | 0.375509 | 1_1:-72497516 | None:intergenic |
| AATTGACATCAAGGGCATTT+GGG | 0.384143 | 1_1:-72498002 | None:intergenic |
| CGAACACTTGCTGCTACAAT+TGG | 0.398537 | 1_1:-72497832 | None:intergenic |
| TATGTGATACAATAGAAAAT+AGG | 0.402948 | 1_1:-72497427 | None:intergenic |
| AGGTGGAGTCGGTGTGTTGT+AGG | 0.412194 | 1_1:-72497407 | None:intergenic |
| CTAAAGCAGGGGTTCAAGAT+AGG | 0.424996 | 1_1:+72497865 | Msa0041910:CDS |
| GGAGCTAGCCATTGCATATG+AGG | 0.425249 | 1_1:+72497697 | Msa0041910:CDS |
| AATGATAGGAATGCGCTAGA+AGG | 0.441151 | 1_1:+72497317 | None:intergenic |
| TATTGATGAATCTTTAAAGA+TGG | 0.449882 | 1_1:-72497527 | None:intergenic |
| GAGTTCACTAAGATGGTTAG+TGG | 0.458624 | 1_1:+72498070 | Msa0041910:three_prime_UTR |
| AGAGACAAGGTTAACAATAA+GGG | 0.465278 | 1_1:+72497975 | Msa0041910:CDS |
| TTTGTTAGTAATTGACATCA+AGG | 0.467943 | 1_1:-72498011 | None:intergenic |
| AGAAAGAGAAGCATAGAAGA+AGG | 0.472112 | 1_1:-72497673 | None:intergenic |
| ATCTAACACCCGACAAACAT+TGG | 0.482241 | 1_1:-72498157 | None:intergenic |
| TTAGCGATTTCTCAGTATGT+TGG | 0.488280 | 1_1:+72498111 | Msa0041910:three_prime_UTR |
| AGTAAACACACACGCTCGCT+TGG | 0.489816 | 1_1:-72498036 | None:intergenic |
| TTTAAAGATGGTGCCAACTT+GGG | 0.492479 | 1_1:-72497515 | None:intergenic |
| AGTGCAAATGTGTTCCTTCT+GGG | 0.495711 | 1_1:+72497919 | Msa0041910:CDS |
| TTGTGATAGCATTAGCAAGT+AGG | 0.508973 | 1_1:-72497563 | None:intergenic |
| GTCGGTGTGTTGTAGGACTA+AGG | 0.510822 | 1_1:-72497400 | None:intergenic |
| GAAAGAGAAGCATAGAAGAA+GGG | 0.513355 | 1_1:-72497672 | None:intergenic |
| CAATTGTAGCAGCAAGTGTT+CGG | 0.519914 | 1_1:+72497833 | Msa0041910:CDS |
| TCGGACAGATGCTCTAAAGC+AGG | 0.531159 | 1_1:+72497852 | Msa0041910:CDS |
| CAATAGAAAATAGGTGGAGT+CGG | 0.555914 | 1_1:-72497418 | None:intergenic |
| TTAGTGGTGCTACCTGTGTA+AGG | 0.562851 | 1_1:+72498086 | Msa0041910:three_prime_UTR |
| CGGACAGATGCTCTAAAGCA+GGG | 0.574198 | 1_1:+72497853 | Msa0041910:CDS |
| GTGATACAATAGAAAATAGG+TGG | 0.581085 | 1_1:-72497424 | None:intergenic |
| GAATGCGCTAGAAGGATTCG+TGG | 0.581723 | 1_1:+72497325 | None:intergenic |
| TTAACCTTGTCTCTGTAGCA+AGG | 0.582422 | 1_1:-72497966 | None:intergenic |
| TTGTTAGTAATTGACATCAA+GGG | 0.585883 | 1_1:-72498010 | None:intergenic |
| GACATTGAGACAGCATGCAA+TGG | 0.589121 | 1_1:-72497373 | None:intergenic |
| ACATGAATCCTCATATGCAA+TGG | 0.604589 | 1_1:-72497705 | None:intergenic |
| AATAGCAACATGGTGAAGAG+AGG | 0.630987 | 1_1:-72497644 | None:intergenic |
| GCGCTAGAAGGATTCGTGGG+TGG | 0.656000 | 1_1:+72497329 | None:intergenic |
| TTGTTCCCATAAGTCCCAGA+AGG | 0.664123 | 1_1:-72497933 | None:intergenic |
| ATGTCCTTGCTACAGAGACA+AGG | 0.668753 | 1_1:+72497962 | Msa0041910:CDS |
| GGACAGATGCTCTAAAGCAG+GGG | 0.697192 | 1_1:+72497854 | Msa0041910:CDS |
| AAATCGCTAACACCTTACAC+AGG | 0.707359 | 1_1:-72498098 | None:intergenic |
| AAGGGAACAGAATAGCAACA+TGG | 0.736288 | 1_1:-72497654 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTGTTATTAATTTTA+TGG | + | chr1_1:72498301-72498320 | Msa0041910:three_prime_UTR | 10.0% |
| !!! | TTCTTTTGTTATTAATTTTA+TGG | + | chr1_1:72498301-72498320 | Msa0041910:three_prime_UTR | 10.0% |
| !!! | TAATTTGTCTATTATATTCT+TGG | + | chr1_1:72497768-72497787 | Msa0041910:intron | 15.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | + | chr1_1:72498193-72498212 | Msa0041910:three_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | + | chr1_1:72498194-72498213 | Msa0041910:three_prime_UTR | 15.0% |
| !!! | TAATTTGTCTATTATATTCT+TGG | + | chr1_1:72497768-72497787 | Msa0041910:intron | 15.0% |
| !!! | ATAAATTTTACATTTTGAGT+TGG | + | chr1_1:72498193-72498212 | Msa0041910:three_prime_UTR | 15.0% |
| !!! | TAAATTTTACATTTTGAGTT+GGG | + | chr1_1:72498194-72498213 | Msa0041910:three_prime_UTR | 15.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | - | chr1_1:72497430-72497449 | None:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | - | chr1_1:72497468-72497487 | None:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | - | chr1_1:72497530-72497549 | None:intergenic | 20.0% |
| !! | TATGTGATACAATAGAAAAT+AGG | - | chr1_1:72497430-72497449 | None:intergenic | 20.0% |
| !! | AAATAATATGAAAAAGCAGA+AGG | - | chr1_1:72497468-72497487 | None:intergenic | 20.0% |
| !!! | TATTGATGAATCTTTAAAGA+TGG | - | chr1_1:72497530-72497549 | None:intergenic | 20.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | + | chr1_1:72497806-72497825 | Msa0041910:intron | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | - | chr1_1:72498013-72498032 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | - | chr1_1:72498014-72498033 | None:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+TGG | - | chr1_1:72498227-72498246 | None:intergenic | 25.0% |
| !!! | TGCATTTCCACTTTTAATAA+TGG | + | chr1_1:72497806-72497825 | Msa0041910:intron | 25.0% |
| ! | TTGTTAGTAATTGACATCAA+GGG | - | chr1_1:72498013-72498032 | None:intergenic | 25.0% |
| ! | TTTGTTAGTAATTGACATCA+AGG | - | chr1_1:72498014-72498033 | None:intergenic | 25.0% |
| !! | TCACATTTATTGGTCTAAAA+TGG | - | chr1_1:72498227-72498246 | None:intergenic | 25.0% |
| GTGATACAATAGAAAATAGG+TGG | - | chr1_1:72497427-72497446 | None:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | - | chr1_1:72497499-72497518 | None:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | + | chr1_1:72497502-72497521 | Msa0041910:five_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | + | chr1_1:72497737-72497756 | Msa0041910:intron | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | - | chr1_1:72497744-72497763 | None:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | + | chr1_1:72497975-72497994 | Msa0041910:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | + | chr1_1:72498048-72498067 | Msa0041910:three_prime_UTR | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | + | chr1_1:72498148-72498167 | Msa0041910:three_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | - | chr1_1:72498237-72498256 | None:intergenic | 30.0% | |
| GTGATACAATAGAAAATAGG+TGG | - | chr1_1:72497427-72497446 | None:intergenic | 30.0% | |
| ! | TGGGAATAGTCTTAAAAAGT+TGG | - | chr1_1:72497499-72497518 | None:intergenic | 30.0% |
| !!! | TTTTAAGACTATTCCCAAGT+TGG | + | chr1_1:72497502-72497521 | Msa0041910:five_prime_UTR | 30.0% |
| TTCACCTATTATGAAATGAG+AGG | + | chr1_1:72497737-72497756 | Msa0041910:intron | 30.0% | |
| GAATCCTCTCATTTCATAAT+AGG | - | chr1_1:72497744-72497763 | None:intergenic | 30.0% | |
| AGAGACAAGGTTAACAATAA+GGG | + | chr1_1:72497975-72497994 | Msa0041910:CDS | 30.0% | |
| !! | GTGTGTTTACTGTTTGTTTT+AGG | + | chr1_1:72498048-72498067 | Msa0041910:three_prime_UTR | 30.0% |
| ! | TTCAGTTTTCCAATGTTTGT+CGG | + | chr1_1:72498148-72498167 | Msa0041910:three_prime_UTR | 30.0% |
| ACAATGTCTCTCACATTTAT+TGG | - | chr1_1:72498237-72498256 | None:intergenic | 30.0% | |
| CAATAGAAAATAGGTGGAGT+CGG | - | chr1_1:72497421-72497440 | None:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | - | chr1_1:72497518-72497537 | None:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | - | chr1_1:72497566-72497585 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | - | chr1_1:72497675-72497694 | None:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | - | chr1_1:72497676-72497695 | None:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | + | chr1_1:72497676-72497695 | Msa0041910:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | - | chr1_1:72497708-72497727 | None:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | - | chr1_1:72497816-72497835 | None:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | + | chr1_1:72497974-72497993 | Msa0041910:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | - | chr1_1:72498005-72498024 | None:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | - | chr1_1:72498006-72498025 | None:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | + | chr1_1:72498063-72498082 | Msa0041910:three_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | + | chr1_1:72498111-72498130 | Msa0041910:three_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | + | chr1_1:72498149-72498168 | Msa0041910:three_prime_UTR | 35.0% |
| CAATAGAAAATAGGTGGAGT+CGG | - | chr1_1:72497421-72497440 | None:intergenic | 35.0% | |
| ! | TTTAAAGATGGTGCCAACTT+GGG | - | chr1_1:72497518-72497537 | None:intergenic | 35.0% |
| TTGTGATAGCATTAGCAAGT+AGG | - | chr1_1:72497566-72497585 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAGCATAGAAGAA+GGG | - | chr1_1:72497675-72497694 | None:intergenic | 35.0% |
| ! | AGAAAGAGAAGCATAGAAGA+AGG | - | chr1_1:72497676-72497695 | None:intergenic | 35.0% |
| TCTTCTATGCTTCTCTTTCT+TGG | + | chr1_1:72497676-72497695 | Msa0041910:CDS | 35.0% | |
| ACATGAATCCTCATATGCAA+TGG | - | chr1_1:72497708-72497727 | None:intergenic | 35.0% | |
| TTGGCTGCCATTATTAAAAG+TGG | - | chr1_1:72497816-72497835 | None:intergenic | 35.0% | |
| CAGAGACAAGGTTAACAATA+AGG | + | chr1_1:72497974-72497993 | Msa0041910:CDS | 35.0% | |
| !! | AATTGACATCAAGGGCATTT+GGG | - | chr1_1:72498005-72498024 | None:intergenic | 35.0% |
| !! | TAATTGACATCAAGGGCATT+TGG | - | chr1_1:72498006-72498025 | None:intergenic | 35.0% |
| !!! | GTTTTAGGAGTTCACTAAGA+TGG | + | chr1_1:72498063-72498082 | Msa0041910:three_prime_UTR | 35.0% |
| TTAGCGATTTCTCAGTATGT+TGG | + | chr1_1:72498111-72498130 | Msa0041910:three_prime_UTR | 35.0% | |
| ! | TCAGTTTTCCAATGTTTGTC+GGG | + | chr1_1:72498149-72498168 | Msa0041910:three_prime_UTR | 35.0% |
| ! | CTTTAAAGATGGTGCCAACT+TGG | - | chr1_1:72497519-72497538 | None:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | - | chr1_1:72497647-72497666 | None:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | - | chr1_1:72497657-72497676 | None:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | + | chr1_1:72497833-72497852 | Msa0041910:CDS | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | + | chr1_1:72497919-72497938 | Msa0041910:CDS | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | - | chr1_1:72497969-72497988 | None:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | + | chr1_1:72498070-72498089 | Msa0041910:three_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | - | chr1_1:72498101-72498120 | None:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | - | chr1_1:72498160-72498179 | None:intergenic | 40.0% | |
| ! | CTTTAAAGATGGTGCCAACT+TGG | - | chr1_1:72497519-72497538 | None:intergenic | 40.0% |
| AATAGCAACATGGTGAAGAG+AGG | - | chr1_1:72497647-72497666 | None:intergenic | 40.0% | |
| AAGGGAACAGAATAGCAACA+TGG | - | chr1_1:72497657-72497676 | None:intergenic | 40.0% | |
| CAATTGTAGCAGCAAGTGTT+CGG | + | chr1_1:72497833-72497852 | Msa0041910:CDS | 40.0% | |
| AGTGCAAATGTGTTCCTTCT+GGG | + | chr1_1:72497919-72497938 | Msa0041910:CDS | 40.0% | |
| TTAACCTTGTCTCTGTAGCA+AGG | - | chr1_1:72497969-72497988 | None:intergenic | 40.0% | |
| GAGTTCACTAAGATGGTTAG+TGG | + | chr1_1:72498070-72498089 | Msa0041910:three_prime_UTR | 40.0% | |
| AAATCGCTAACACCTTACAC+AGG | - | chr1_1:72498101-72498120 | None:intergenic | 40.0% | |
| ATCTAACACCCGACAAACAT+TGG | - | chr1_1:72498160-72498179 | None:intergenic | 40.0% | |
| GCATGCAATGGTTTCAGTTC+TGG | - | chr1_1:72497364-72497383 | None:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | - | chr1_1:72497376-72497395 | None:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | - | chr1_1:72497835-72497854 | None:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | + | chr1_1:72497865-72497884 | Msa0041910:CDS | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | + | chr1_1:72497918-72497937 | Msa0041910:CDS | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | + | chr1_1:72497927-72497946 | Msa0041910:CDS | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | + | chr1_1:72497928-72497947 | Msa0041910:CDS | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | - | chr1_1:72497936-72497955 | None:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | + | chr1_1:72497962-72497981 | Msa0041910:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | + | chr1_1:72498086-72498105 | Msa0041910:three_prime_UTR | 45.0% |
| GCATGCAATGGTTTCAGTTC+TGG | - | chr1_1:72497364-72497383 | None:intergenic | 45.0% | |
| GACATTGAGACAGCATGCAA+TGG | - | chr1_1:72497376-72497395 | None:intergenic | 45.0% | |
| ! | CGAACACTTGCTGCTACAAT+TGG | - | chr1_1:72497835-72497854 | None:intergenic | 45.0% |
| CTAAAGCAGGGGTTCAAGAT+AGG | + | chr1_1:72497865-72497884 | Msa0041910:CDS | 45.0% | |
| GAGTGCAAATGTGTTCCTTC+TGG | + | chr1_1:72497918-72497937 | Msa0041910:CDS | 45.0% | |
| !! | TGTGTTCCTTCTGGGACTTA+TGG | + | chr1_1:72497927-72497946 | Msa0041910:CDS | 45.0% |
| !! | GTGTTCCTTCTGGGACTTAT+GGG | + | chr1_1:72497928-72497947 | Msa0041910:CDS | 45.0% |
| TTGTTCCCATAAGTCCCAGA+AGG | - | chr1_1:72497936-72497955 | None:intergenic | 45.0% | |
| ATGTCCTTGCTACAGAGACA+AGG | + | chr1_1:72497962-72497981 | Msa0041910:CDS | 45.0% | |
| !! | TTAGTGGTGCTACCTGTGTA+AGG | + | chr1_1:72498086-72498105 | Msa0041910:three_prime_UTR | 45.0% |
| GTCGGTGTGTTGTAGGACTA+AGG | - | chr1_1:72497403-72497422 | None:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | + | chr1_1:72497697-72497716 | Msa0041910:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | + | chr1_1:72497852-72497871 | Msa0041910:CDS | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | + | chr1_1:72497853-72497872 | Msa0041910:CDS | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | + | chr1_1:72497854-72497873 | Msa0041910:CDS | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | - | chr1_1:72498039-72498058 | None:intergenic | 50.0% | |
| GTCGGTGTGTTGTAGGACTA+AGG | - | chr1_1:72497403-72497422 | None:intergenic | 50.0% | |
| GGAGCTAGCCATTGCATATG+AGG | + | chr1_1:72497697-72497716 | Msa0041910:CDS | 50.0% | |
| !! | TCGGACAGATGCTCTAAAGC+AGG | + | chr1_1:72497852-72497871 | Msa0041910:CDS | 50.0% |
| !! | CGGACAGATGCTCTAAAGCA+GGG | + | chr1_1:72497853-72497872 | Msa0041910:CDS | 50.0% |
| !! | GGACAGATGCTCTAAAGCAG+GGG | + | chr1_1:72497854-72497873 | Msa0041910:CDS | 50.0% |
| AGTAAACACACACGCTCGCT+TGG | - | chr1_1:72498039-72498058 | None:intergenic | 50.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | - | chr1_1:72497410-72497429 | None:intergenic | 55.0% | |
| AGGTGGAGTCGGTGTGTTGT+AGG | - | chr1_1:72497410-72497429 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72497331 | 72498354 | 72497331 | ID=Msa0041910;Name=Msa0041910 |
| chr1_1 | mRNA | 72497331 | 72498354 | 72497331 | ID=Msa0041910-mRNA-1;Parent=Msa0041910;Name=Msa0041910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=307|1|1|1|1|1|2|338|90 |
| chr1_1 | exon | 72497331 | 72497725 | 72497331 | ID=Msa0041910-mRNA-1:exon:24112;Parent=Msa0041910-mRNA-1 |
| chr1_1 | exon | 72497832 | 72498354 | 72497832 | ID=Msa0041910-mRNA-1:exon:24113;Parent=Msa0041910-mRNA-1 |
| chr1_1 | five_prime_UTR | 72497331 | 72497637 | 72497331 | ID=Msa0041910-mRNA-1:five_prime_utr;Parent=Msa0041910-mRNA-1 |
| chr1_1 | CDS | 72497638 | 72497725 | 72497638 | ID=Msa0041910-mRNA-1:cds;Parent=Msa0041910-mRNA-1 |
| chr1_1 | CDS | 72497832 | 72498016 | 72497832 | ID=Msa0041910-mRNA-1:cds;Parent=Msa0041910-mRNA-1 |
| chr1_1 | three_prime_UTR | 72498017 | 72498354 | 72498017 | ID=Msa0041910-mRNA-1:three_prime_utr;Parent=Msa0041910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
