AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054130 MtrunA17_Chr1g0150451 99.110 337 3 0 1 337 1 337 0.0 689
Msa0054130 MtrunA17_Chr3g0136711 92.491 293 21 1 44 336 1 292 0.0 556
Msa0054130 MtrunA17_Chr1g0212961 65.918 267 82 3 62 323 75 337 1.31e-127 369
Msa0054130 MtrunA17_Chr3g0126511 58.333 288 113 2 43 323 53 340 4.55e-116 340
Msa0054130 MtrunA17_Chr4g0050381 47.328 262 131 5 66 323 18 276 1.33e-69 218
Msa0054130 MtrunA17_Chr2g0279151 45.802 262 135 5 66 323 22 280 7.55e-69 216
Msa0054130 MtrunA17_Chr5g0426141 43.893 262 140 5 66 323 23 281 9.21e-67 211
Msa0054130 MtrunA17_Chr3g0115851 42.254 284 157 5 44 323 1 281 2.05e-66 210
Msa0054130 MtrunA17_Chr8g0360351 44.803 279 138 7 50 323 14 281 2.28e-66 210
Msa0054130 MtrunA17_Chr2g0317021 42.000 300 149 8 46 323 36 332 4.35e-66 211
Msa0054130 MtrunA17_Chr3g0105371 41.197 284 144 6 51 323 67 338 1.74e-61 199
Msa0054130 MtrunA17_Chr3g0105351 40.141 284 147 6 51 323 43 314 2.13e-59 193
Msa0054130 MtrunA17_Chr4g0051661 42.857 252 136 5 76 323 150 397 2.67e-59 196
Msa0054130 MtrunA17_Chr5g0430481 40.784 255 138 4 78 323 124 374 5.01e-56 186
Msa0054130 MtrunA17_Chr1g0171571 40.698 258 140 6 76 321 386 642 1.23e-48 172
Msa0054130 MtrunA17_Chr1g0150781 35.762 302 136 7 78 321 240 541 1.34e-46 166
Msa0054130 MtrunA17_Chr5g0407161 38.023 263 141 7 79 323 87 345 3.21e-45 158
Msa0054130 MtrunA17_Chr2g0299981 33.524 349 156 9 53 328 195 540 4.19e-45 161
Msa0054130 MtrunA17_Chr4g0070871 39.526 253 110 6 108 321 253 501 1.02e-43 157
Msa0054130 MtrunA17_Chr5g0435721 39.912 228 123 3 78 291 193 420 1.54e-43 156
Msa0054130 MtrunA17_Chr3g0112291 33.974 312 169 5 62 336 77 388 2.58e-43 153
Msa0054130 MtrunA17_Chr1g0194191 34.420 276 147 8 85 331 87 357 6.97e-43 152
Msa0054130 MtrunA17_Chr4g0065141 35.581 267 147 5 79 323 87 350 2.69e-42 150
Msa0054130 MtrunA17_Chr3g0135961 34.528 307 138 7 78 321 231 537 6.42e-42 153
Msa0054130 MtrunA17_Chr5g0396731 36.140 285 144 9 77 326 72 353 2.65e-41 147
Msa0054130 MtrunA17_Chr1g0158781 38.686 274 141 6 72 321 107 377 1.45e-40 146
Msa0054130 MtrunA17_Chr8g0389921 34.589 292 145 9 73 321 144 432 7.08e-40 145
Msa0054130 MtrunA17_Chr3g0138281 36.296 270 147 8 75 323 80 345 1.11e-39 144
Msa0054130 MtrunA17_Chr2g0293811 32.746 284 141 9 75 321 59 329 1.75e-38 140
Msa0054130 MtrunA17_Chr6g0483411 34.783 276 148 8 81 326 48 321 4.00e-38 138
Msa0054130 MtrunA17_Chr3g0144111 38.496 226 104 6 108 323 27 227 3.47e-37 134
Msa0054130 MtrunA17_Chr1g0150071 30.818 318 148 12 72 323 18 329 8.62e-35 130
Msa0054130 MtrunA17_Chr4g0001761 28.527 319 153 9 72 323 18 328 3.84e-33 125
Msa0054130 MtrunA17_Chr3g0136811 29.538 325 159 10 72 331 18 337 7.46e-33 125
Msa0054130 MtrunA17_Chr3g0127091 27.508 309 168 8 60 320 46 346 3.11e-28 113
Msa0054130 MtrunA17_Chr4g0066371 30.970 268 142 9 106 331 84 350 9.05e-28 112
Msa0054130 MtrunA17_Chr1g0187481 29.333 225 142 4 99 323 70 277 1.70e-27 108
Msa0054130 MtrunA17_Chr1g0209451 31.783 258 147 10 91 324 46 298 2.45e-27 111
Msa0054130 MtrunA17_Chr7g0271971 32.540 252 144 8 97 328 57 302 1.09e-26 109
Msa0054130 MtrunA17_Chr2g0286951 29.545 308 170 11 70 337 55 355 3.22e-26 107
Msa0054130 MtrunA17_Chr1g0153671 33.333 240 136 9 108 328 65 299 3.46e-26 107
Msa0054130 MtrunA17_Chr4g0004971 30.605 281 144 10 103 333 72 351 9.32e-26 105
Msa0054130 MtrunA17_Chr7g0256751 31.873 251 130 8 108 318 69 318 3.59e-25 105
Msa0054130 MtrunA17_Chr3g0133801 31.148 244 144 8 108 332 66 304 3.81e-25 105
Msa0054130 MtrunA17_Chr7g0243571 29.329 283 143 7 110 336 94 375 5.25e-25 104
Msa0054130 MtrunA17_Chr7g0225501 33.206 262 149 12 97 336 75 332 6.60e-25 104
Msa0054130 MtrunA17_Chr7g0272061 30.488 246 123 7 110 307 93 338 6.73e-25 103
Msa0054130 MtrunA17_Chr1g0192471 30.389 283 158 11 72 324 25 298 3.29e-24 102
Msa0054130 MtrunA17_Chr1g0192421 33.333 240 115 11 110 307 91 327 4.27e-24 100
Msa0054130 MtrunA17_Chr2g0295401 31.276 243 128 7 104 307 88 330 5.75e-24 100
Msa0054130 MtrunA17_Chr7g0263281 31.325 249 122 8 88 290 47 292 6.34e-24 100
Msa0054130 MtrunA17_Chr1g0213351 30.830 253 128 8 98 307 69 317 9.57e-24 100
Msa0054130 MtrunA17_Chr5g0394181 29.167 360 180 16 28 323 249 597 9.96e-24 102
Msa0054130 MtrunA17_Chr4g0067711 35.556 180 91 7 168 323 174 352 1.42e-23 99.8
Msa0054130 MtrunA17_Chr1g0166481 28.972 214 131 3 110 323 81 273 2.11e-23 97.8
Msa0054130 MtrunA17_Chr1g0151781 33.036 224 110 6 110 294 70 292 2.39e-23 99.0
Msa0054130 MtrunA17_Chr6g0486661 29.961 257 136 9 108 321 124 379 2.96e-23 100
Msa0054130 MtrunA17_Chr7g0256771 31.154 260 128 10 74 291 42 292 5.49e-23 97.4
Msa0054130 MtrunA17_Chr8g0371321 30.000 290 137 10 110 337 81 366 1.11e-22 97.8
Msa0054130 MtrunA17_Chr1g0181901 30.120 249 125 7 88 290 52 297 1.91e-22 97.1
Msa0054130 MtrunA17_Chr3g0089711 29.348 276 143 11 74 307 40 305 6.64e-22 95.1
Msa0054130 MtrunA17_Chr3g0089721 29.389 262 136 10 88 307 51 305 1.09e-21 94.7
Msa0054130 MtrunA17_Chr1g0207571 29.617 287 133 9 110 332 63 344 3.30e-21 93.2
Msa0054130 MtrunA17_Chr2g0294291 29.022 317 171 10 47 312 5 318 1.02e-20 91.7
Msa0054130 MtrunA17_Chr1g0185141 28.692 237 111 6 143 321 200 436 1.51e-20 92.8
Msa0054130 MtrunA17_Chr1g0211251 28.571 224 115 7 110 291 83 303 3.01e-19 87.8
Msa0054130 MtrunA17_Chr4g0022171 30.677 251 120 7 110 307 98 347 7.64e-19 87.0
Msa0054130 MtrunA17_Chr7g0250061 27.530 247 133 7 108 312 76 318 1.21e-18 85.9
Msa0054130 MtrunA17_Chr2g0324061 30.249 281 134 10 110 331 92 369 1.21e-18 86.7
Msa0054130 MtrunA17_Chr7g0238501 30.088 226 114 5 110 291 265 490 2.80e-18 85.9
Msa0054130 MtrunA17_Chr1g0175381 28.309 272 137 9 108 321 79 350 9.16e-18 83.6
Msa0054130 MtrunA17_Chr4g0063111 27.481 262 151 9 90 317 60 316 1.06e-17 84.0
Msa0054130 MtrunA17_Chr7g0221691 29.435 248 140 9 82 307 150 384 1.12e-16 80.5
Msa0054130 MtrunA17_Chr4g0068971 35.659 129 70 3 203 321 104 229 2.12e-16 78.2
Msa0054130 MtrunA17_Chr7g0249421 29.577 213 127 6 136 326 174 385 2.44e-16 79.7
Msa0054130 MtrunA17_Chr4g0039061 28.745 247 132 8 110 312 204 450 9.58e-16 77.8
Msa0054130 MtrunA17_Chr8g0342431 33.721 172 95 6 155 309 183 352 2.64e-15 76.3
Msa0054130 MtrunA17_Chr2g0295991 27.119 295 139 12 95 313 151 445 1.72e-13 71.2
Msa0054130 MtrunA17_Chr3g0089691 31.176 170 85 4 169 307 51 219 2.96e-13 69.3
Msa0054130 MtrunA17_Chr4g0067301 32.484 157 70 5 169 291 277 431 2.45e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054130 AT4G31750.2 90.476 294 24 2 44 334 1 293 0.0 536
Msa0054130 AT4G31750.1 90.476 294 24 2 44 334 1 293 0.0 536
Msa0054130 AT4G31750.3 90.476 294 24 2 44 334 1 293 0.0 536
Msa0054130 AT5G24940.1 83.630 281 45 1 44 324 1 280 4.45e-176 496
Msa0054130 AT5G10740.1 82.562 281 48 1 44 324 1 280 1.28e-172 483
Msa0054130 AT5G10740.2 82.562 281 48 1 44 324 1 280 1.28e-172 483
Msa0054130 AT1G43900.1 63.878 263 89 2 66 323 107 368 1.13e-124 362
Msa0054130 AT5G53140.1 58.687 259 107 0 65 323 89 347 1.05e-113 336
Msa0054130 AT5G53140.2 58.687 259 107 0 65 323 89 347 1.05e-113 336
Msa0054130 AT1G78200.1 45.420 262 139 3 66 323 21 282 5.73e-71 222
Msa0054130 AT1G78200.3 45.420 262 139 3 66 323 21 282 5.73e-71 222
Msa0054130 AT1G78200.2 45.420 262 139 3 66 323 21 282 5.73e-71 222
Msa0054130 AT1G34750.2 44.656 262 138 5 66 323 23 281 2.81e-68 215
Msa0054130 AT1G34750.1 44.656 262 138 5 66 323 23 281 2.81e-68 215
Msa0054130 AT1G34750.3 44.656 262 138 5 66 323 23 281 2.81e-68 215
Msa0054130 AT1G78200.5 46.414 237 124 2 90 323 1 237 1.32e-67 212
Msa0054130 AT1G78200.4 46.414 237 124 2 90 323 1 237 1.32e-67 212
Msa0054130 AT2G20630.1 45.635 252 130 5 76 323 30 278 9.77e-67 211
Msa0054130 AT4G28400.1 43.774 265 141 6 64 323 21 282 4.19e-65 207
Msa0054130 AT2G20630.2 45.059 253 132 5 76 324 30 279 8.20e-65 207
Msa0054130 AT4G28400.3 44.048 252 134 5 76 323 12 260 8.47e-65 206
Msa0054130 AT1G22280.1 44.488 254 134 5 74 323 30 280 3.97e-64 205
Msa0054130 AT3G15260.2 45.627 263 135 6 66 323 29 288 6.06e-63 202
Msa0054130 AT3G15260.1 45.627 263 135 6 66 323 29 288 6.06e-63 202
Msa0054130 AT1G22280.3 43.846 260 133 6 74 323 30 286 3.49e-62 200
Msa0054130 AT2G34740.1 43.922 255 134 6 75 324 85 335 2.84e-59 194
Msa0054130 AT2G40180.1 40.996 261 135 7 78 323 129 385 2.33e-56 188
Msa0054130 AT1G07160.1 41.473 258 135 6 78 323 123 376 5.17e-56 187
Msa0054130 AT2G30020.1 38.790 281 159 4 51 321 113 390 3.69e-55 185
Msa0054130 AT1G34750.4 44.749 219 114 5 66 280 23 238 6.52e-53 175
Msa0054130 AT1G67820.2 42.982 228 117 4 72 290 74 297 2.79e-52 178
Msa0054130 AT1G67820.1 42.982 228 117 4 72 290 110 333 8.34e-52 177
Msa0054130 AT3G51470.2 40.230 261 139 7 76 323 27 283 7.89e-49 166
Msa0054130 AT3G51470.1 40.230 261 139 7 76 323 71 327 1.65e-48 167
Msa0054130 AT2G40860.4 40.230 261 136 7 76 321 293 548 9.10e-48 169
Msa0054130 AT2G40860.1 40.230 261 136 7 76 321 391 646 1.50e-47 170
Msa0054130 AT4G28400.2 41.892 222 121 6 64 280 21 239 2.89e-47 160
Msa0054130 AT5G57050.2 38.796 299 126 11 78 321 73 369 2.00e-46 162
Msa0054130 AT5G57050.1 38.796 299 126 11 78 321 113 409 3.47e-46 162
Msa0054130 AT4G26080.1 38.176 296 127 10 78 321 129 420 9.65e-46 161
Msa0054130 AT3G62260.1 35.766 274 143 7 85 329 85 354 3.76e-45 159
Msa0054130 AT3G62260.2 35.766 274 143 7 85 329 86 355 3.80e-45 159
Msa0054130 AT3G62260.3 36.059 269 139 7 90 329 1 265 8.36e-45 155
Msa0054130 AT2G33700.1 39.648 227 123 5 107 323 122 344 1.20e-44 157
Msa0054130 AT2G34740.2 41.395 215 117 6 75 284 99 309 5.48e-44 154
Msa0054130 AT5G59220.1 40.948 232 119 4 78 291 112 343 5.69e-44 156
Msa0054130 AT2G34740.3 41.395 215 117 6 75 284 81 291 6.13e-44 153
Msa0054130 AT1G07430.1 40.084 237 117 6 78 291 121 355 1.41e-43 155
Msa0054130 AT2G40860.2 38.800 250 133 7 76 310 391 635 4.35e-42 155
Msa0054130 AT2G29380.1 37.324 284 135 8 78 321 78 358 4.38e-42 150
Msa0054130 AT2G25620.1 36.782 261 138 5 85 321 97 354 4.80e-42 150
Msa0054130 AT2G25620.2 36.782 261 138 5 85 321 97 354 4.80e-42 150
Msa0054130 AT5G51760.2 32.132 333 168 5 53 328 55 386 2.82e-40 145
Msa0054130 AT3G17250.1 36.777 242 125 7 106 323 156 393 3.33e-40 146
Msa0054130 AT1G17550.1 34.936 312 134 9 78 321 189 499 4.12e-40 147
Msa0054130 AT1G17550.2 34.936 312 134 9 78 321 189 499 4.12e-40 147
Msa0054130 AT5G51760.1 32.132 333 168 5 53 328 85 416 4.67e-40 145
Msa0054130 AT3G11410.1 36.975 238 125 3 79 291 106 343 2.37e-39 144
Msa0054130 AT1G48040.1 38.618 246 111 6 107 323 115 349 3.97e-39 142
Msa0054130 AT1G72770.4 33.546 313 136 8 78 321 190 499 1.79e-38 143
Msa0054130 AT1G72770.1 33.546 313 136 8 78 321 190 499 1.79e-38 143
Msa0054130 AT1G72770.3 33.546 313 136 8 78 321 190 499 1.79e-38 143
Msa0054130 AT1G18030.1 32.967 273 151 9 81 323 78 348 1.69e-33 127
Msa0054130 AT2G25070.1 29.394 330 163 10 72 336 18 342 6.08e-31 120
Msa0054130 AT2G25070.2 29.394 330 163 10 72 336 18 342 6.08e-31 120
Msa0054130 AT2G40860.3 38.095 210 111 6 76 271 391 595 1.08e-30 122
Msa0054130 AT4G31860.1 29.338 317 154 9 72 323 18 329 1.92e-30 119
Msa0054130 AT3G16800.2 34.599 237 122 6 104 307 89 325 3.06e-30 118
Msa0054130 AT3G16800.1 34.599 237 122 6 104 307 89 325 3.06e-30 118
Msa0054130 AT3G16800.3 34.599 237 122 6 104 307 89 325 3.06e-30 118
Msa0054130 AT3G16800.4 34.783 230 117 6 111 307 1 230 5.55e-30 115
Msa0054130 AT3G16800.6 34.783 230 117 6 111 307 1 230 5.55e-30 115
Msa0054130 AT4G08260.1 34.091 220 107 5 108 321 19 206 1.17e-29 113
Msa0054130 AT1G22280.2 41.558 154 85 4 74 225 30 180 3.67e-29 111
Msa0054130 AT4G31860.3 30.909 275 129 8 72 290 18 287 6.57e-29 113
Msa0054130 AT1G68410.4 33.475 236 133 8 108 324 73 303 6.80e-29 115
Msa0054130 AT1G68410.3 33.475 236 133 8 108 324 73 303 6.80e-29 115
Msa0054130 AT1G68410.1 33.475 236 133 8 108 324 73 303 6.80e-29 115
Msa0054130 AT1G68410.2 33.475 236 133 8 108 324 73 303 6.80e-29 115
Msa0054130 AT1G18030.2 34.222 225 121 7 81 280 78 300 1.99e-28 112
Msa0054130 AT4G27800.1 29.126 309 163 9 60 320 45 345 5.70e-28 112
Msa0054130 AT5G57050.3 39.196 199 90 9 78 247 113 309 1.25e-27 110
Msa0054130 AT1G09160.2 32.245 245 140 9 97 321 57 295 1.29e-27 112
Msa0054130 AT1G09160.1 32.245 245 140 9 97 321 57 295 1.29e-27 112
Msa0054130 AT4G32950.1 33.910 289 139 12 39 299 19 283 3.03e-27 109
Msa0054130 AT5G59220.2 38.378 185 96 4 78 244 112 296 3.54e-27 108
Msa0054130 AT1G47380.1 31.557 244 143 8 108 332 64 302 8.16e-27 110
Msa0054130 AT5G02760.1 31.579 266 132 9 69 290 32 291 1.01e-26 108
Msa0054130 AT4G31860.2 31.179 263 120 8 72 278 18 275 3.01e-26 105
Msa0054130 AT4G27800.3 30.325 277 139 9 60 291 45 312 7.00e-26 105
Msa0054130 AT4G27800.2 29.710 276 142 8 60 291 45 312 7.53e-26 105
Msa0054130 AT5G27930.1 31.034 261 132 8 110 323 94 353 5.27e-25 104
Msa0054130 AT5G27930.2 31.034 261 132 8 110 323 94 353 5.27e-25 104
Msa0054130 AT2G20050.2 31.518 257 133 10 108 323 143 397 1.95e-24 104
Msa0054130 AT2G20050.1 31.518 257 133 10 108 323 143 397 2.15e-24 104
Msa0054130 AT3G05640.2 32.941 255 130 11 110 323 95 349 2.31e-24 102
Msa0054130 AT3G05640.1 32.941 255 130 11 110 323 95 349 2.31e-24 102
Msa0054130 AT3G05640.3 32.941 255 130 11 110 323 95 349 2.31e-24 102
Msa0054130 AT3G23360.1 30.075 266 140 7 63 323 35 259 2.79e-24 100
Msa0054130 AT3G63320.1 27.273 319 134 8 105 326 66 383 3.45e-24 102
Msa0054130 AT3G06270.1 28.231 294 164 11 70 323 56 342 6.24e-24 100
Msa0054130 AT5G19280.1 30.851 282 154 11 76 323 303 577 7.05e-24 102
Msa0054130 AT3G51370.1 29.412 289 136 10 108 333 79 362 3.30e-23 99.4
Msa0054130 AT3G51370.3 29.412 289 136 10 108 333 79 362 3.30e-23 99.4
Msa0054130 AT3G17090.1 33.058 242 122 7 110 312 86 326 3.66e-23 99.4
Msa0054130 AT5G26010.1 35.681 213 105 8 108 290 73 283 6.07e-23 97.8
Msa0054130 AT3G12620.2 29.537 281 133 9 103 321 78 355 3.35e-22 96.7
Msa0054130 AT3G12620.1 29.537 281 133 9 103 321 78 355 3.35e-22 96.7
Msa0054130 AT3G17090.2 33.182 220 108 6 110 290 86 305 3.92e-22 95.5
Msa0054130 AT3G27140.1 30.268 261 115 5 90 335 1 209 4.89e-22 93.6
Msa0054130 AT3G63340.12 28.512 242 115 7 143 326 207 448 5.09e-22 97.1
Msa0054130 AT3G55050.1 30.249 281 131 10 103 321 79 356 6.83e-22 95.9
Msa0054130 AT3G55050.2 30.249 281 131 10 103 321 79 356 6.83e-22 95.9
Msa0054130 AT3G63340.11 28.512 242 115 7 143 326 207 448 8.81e-22 97.1
Msa0054130 AT3G63340.8 28.512 242 115 7 143 326 207 448 9.27e-22 97.1
Msa0054130 AT3G63340.6 28.512 242 115 7 143 326 207 448 9.42e-22 97.1
Msa0054130 AT3G63340.3 28.512 242 115 7 143 326 207 448 9.42e-22 97.1
Msa0054130 AT3G63340.10 28.512 242 115 7 143 326 207 448 9.42e-22 97.1
Msa0054130 AT3G63340.4 28.512 242 115 7 143 326 207 448 9.42e-22 97.1
Msa0054130 AT3G63340.5 28.512 242 115 7 143 326 207 448 9.71e-22 97.1
Msa0054130 AT3G63340.1 28.512 242 115 7 143 326 207 448 9.71e-22 97.1
Msa0054130 AT3G63340.7 28.512 242 115 7 143 326 207 448 1.03e-21 96.7
Msa0054130 AT5G01700.1 32.453 265 129 10 110 328 31 291 1.63e-21 94.0
Msa0054130 AT3G63320.2 29.630 243 111 7 143 326 59 300 2.32e-21 94.0
Msa0054130 AT5G01700.2 32.210 267 131 10 108 328 78 340 4.65e-21 93.2
Msa0054130 AT1G72770.2 33.023 215 93 6 78 244 190 401 6.78e-21 93.2
Msa0054130 AT1G72770.5 33.023 215 93 6 78 244 190 401 6.78e-21 93.2
Msa0054130 AT4G32950.2 32.959 267 129 11 39 277 19 263 7.46e-21 91.3
Msa0054130 AT5G06750.3 28.689 244 123 7 110 307 84 322 2.27e-20 91.7
Msa0054130 AT5G06750.1 28.689 244 123 7 110 307 84 322 2.27e-20 91.7
Msa0054130 AT5G66080.1 30.204 245 125 7 110 312 84 324 3.24e-20 90.9
Msa0054130 AT4G38520.2 26.389 360 181 12 44 326 6 358 3.32e-20 90.9
Msa0054130 AT4G38520.1 26.389 360 181 12 44 326 6 358 3.32e-20 90.9
Msa0054130 AT4G33920.1 29.514 288 134 12 110 332 63 346 5.33e-20 90.1
Msa0054130 AT1G79630.2 31.308 214 124 5 136 327 119 331 3.80e-19 88.2
Msa0054130 AT1G79630.7 31.308 214 124 5 136 327 119 331 3.80e-19 88.2
Msa0054130 AT1G79630.8 31.308 214 124 5 136 327 185 397 6.55e-19 87.8
Msa0054130 AT1G79630.1 31.308 214 124 5 136 327 189 401 6.68e-19 87.8
Msa0054130 AT1G79630.6 31.308 214 124 5 136 327 79 291 7.43e-19 87.0
Msa0054130 AT1G79630.3 31.308 214 124 5 136 327 79 291 7.43e-19 87.0
Msa0054130 AT1G79630.4 31.308 214 124 5 136 327 79 291 7.43e-19 87.0
Msa0054130 AT1G79630.5 31.308 214 124 5 136 327 79 291 7.43e-19 87.0
Msa0054130 AT1G03590.1 32.627 236 107 9 106 290 88 322 1.41e-18 86.7
Msa0054130 AT1G16220.1 28.421 285 138 9 108 327 95 378 3.45e-18 85.9
Msa0054130 AT4G03415.1 32.365 241 108 10 104 290 93 332 1.72e-17 83.6
Msa0054130 AT4G03415.3 32.365 241 108 10 104 290 93 332 1.72e-17 83.6
Msa0054130 AT4G03415.2 32.365 241 108 10 104 290 93 332 1.72e-17 83.6
Msa0054130 AT2G05050.1 43.299 97 49 1 231 321 91 187 3.49e-17 79.0
Msa0054130 AT5G36250.1 27.826 230 132 8 122 328 169 387 3.77e-17 82.4
Msa0054130 AT3G51370.2 29.555 247 113 8 146 333 33 277 8.41e-17 80.1
Msa0054130 AT3G02750.2 32.203 177 102 4 131 290 178 353 8.81e-17 81.6
Msa0054130 AT3G02750.1 32.203 177 102 4 131 290 178 353 8.81e-17 81.6
Msa0054130 AT3G63340.2 32.394 142 81 4 200 326 340 481 3.65e-15 77.0
Msa0054130 AT3G16560.3 26.966 267 121 11 95 290 160 423 1.75e-12 68.6
Msa0054130 AT3G16560.1 26.966 267 121 11 95 290 160 423 2.06e-12 68.2
Msa0054130 AT3G16560.4 26.966 267 121 11 95 290 160 423 2.06e-12 68.2
Msa0054130 AT3G16560.2 26.966 267 121 11 95 290 160 423 2.06e-12 68.2
Msa0054130 AT5G36250.3 28.814 177 97 7 122 280 169 334 2.50e-11 64.3
Msa0054130 AT3G02750.3 26.887 212 102 5 131 290 178 388 3.29e-11 64.7

Find 100 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCTTACTTCCATATTT+TGG 0.048660 1_2:-8735051 Msa0054130:three_prime_UTR
ATCAAAAGTTAAACTTATTA+TGG 0.223511 1_2:-8735100 Msa0054130:three_prime_UTR
TAGAAACACACCTGAATTTC+CGG 0.245664 1_2:+8736266 None:intergenic
GGCTGATCAAATTACTAAAT+AGG 0.269326 1_2:+8737207 None:intergenic
TTCTCTTGAGTTTCTTATAC+TGG 0.273284 1_2:-8736107 Msa0054130:CDS
TGGTGTCAGAAATGAATTTC+GGG 0.277480 1_2:+8737183 None:intergenic
TGAATATTCAACTTGTGATA+TGG 0.282310 1_2:-8739925 Msa0054130:CDS
CTACAGACCTATTGCAGATT+TGG 0.286258 1_2:+8737163 None:intergenic
TGTTGCTGATCCGGAAATTC+AGG 0.290323 1_2:-8736276 Msa0054130:intron
GCTTCTTCTGCATCCTCAAT+TGG 0.302601 1_2:+8735336 None:intergenic
AGGTTATTCTTGCTTGAAAA+AGG 0.314028 1_2:+8740021 None:intergenic
ACAAATAGGATCCCAAAATA+TGG 0.319454 1_2:+8735039 None:intergenic
TTTGGTCTGGTTTGTGATCT+CGG 0.324635 1_2:+8736506 None:intergenic
TCCTTTGCCTCTCATCGGTT+TGG 0.352602 1_2:+8736488 None:intergenic
TTCCTAGCTACAATACAAAT+AGG 0.352651 1_2:+8735025 None:intergenic
GCTTCCACTGCCATTCTTGT+TGG 0.352895 1_2:-8736966 Msa0054130:CDS
CTTGCTGTTTCTCGCGCATT+TGG 0.353518 1_2:-8736323 Msa0054130:CDS
TTGGTGTCAGAAATGAATTT+CGG 0.353974 1_2:+8737182 None:intergenic
TCAAAATCAGAGTTAATTAT+AGG 0.357301 1_2:-8735170 Msa0054130:three_prime_UTR
CCACTATTGTTATGATAACT+TGG 0.368566 1_2:-8740046 Msa0054130:exon
ACAAGAATTGACGGCGTTGA+TGG 0.370122 1_2:-8738196 Msa0054130:CDS
TCCATTGAAGATCTCTTGCC+AGG 0.370550 1_2:+8738232 None:intergenic
GTTTGCTTGTTGCAAATGTT+GGG 0.374361 1_2:-8736938 Msa0054130:CDS
TTTACATGCAGACATTTGTA+TGG 0.379554 1_2:+8734962 None:intergenic
GCAATACGTTGTTGCTGATC+CGG 0.380454 1_2:-8736285 Msa0054130:CDS
CTGTTAGTGGTGGAGGGCTC+AGG 0.380832 1_2:-8739845 Msa0054130:intron
CGTTTGCTTGTTGCAAATGT+TGG 0.389439 1_2:-8736939 Msa0054130:CDS
TGCCTCTCATCGGTTTGGTC+TGG 0.391323 1_2:+8736493 None:intergenic
AAGAACCTTGATTGTTCATC+AGG 0.396468 1_2:+8735241 None:intergenic
CTGAGCCCTCCACCACTAAC+AGG 0.401508 1_2:+8739846 None:intergenic
GCAGCATGAACCTGACTTGA+AGG 0.411927 1_2:+8739879 None:intergenic
AACCATACTTTACAGGAACT+TGG 0.415452 1_2:-8736361 Msa0054130:intron
GTTATATGCAGGGGTGGAAA+TGG 0.436154 1_2:-8736903 Msa0054130:intron
TCTGACACCAAATCTGCAAT+AGG 0.436455 1_2:-8737170 Msa0054130:intron
ATGCGGGAGGCTTTGTTATG+TGG 0.437386 1_2:-8736459 Msa0054130:CDS
CCAAGTTATCATAACAATAG+TGG 0.438250 1_2:+8740046 None:intergenic
TTGGTCTGGTTTGTGATCTC+GGG 0.438844 1_2:+8736507 None:intergenic
GAATATTCAACTTGTGATAT+GGG 0.443257 1_2:-8739924 Msa0054130:CDS
CAGCAACAACGTATTGCTTA+AGG 0.446853 1_2:+8736291 None:intergenic
CGTTTCCTGATGAACAATCA+AGG 0.448939 1_2:-8735246 Msa0054130:CDS
TTCTATCCTTTGCCTCTCAT+CGG 0.449419 1_2:+8736483 None:intergenic
AATAATCAAAACAGAGATGC+TGG 0.452585 1_2:-8736996 Msa0054130:CDS
GGAGGCTTTGTTATGTGGGC+TGG 0.461457 1_2:-8736454 Msa0054130:intron
TATGGTCTTGCAGGAAGAAA+AGG 0.465734 1_2:-8736137 Msa0054130:intron
ACCCCTGCATATAACAGCTC+TGG 0.472724 1_2:+8736911 None:intergenic
TATGGATATGCTAGCTCCCC+TGG 0.473211 1_2:-8738250 Msa0054130:CDS
TCTCTTCTCCTCTCTCCCTA+AGG 0.490415 1_2:-8740294 Msa0054130:intron
CATAACAATAGTGGAAAAGT+GGG 0.492404 1_2:+8740055 None:intergenic
TGCTATGATTAAACCAATTG+AGG 0.496383 1_2:-8735349 Msa0054130:CDS
ACTCCAGAGCTGTTATATGC+AGG 0.496874 1_2:-8736914 Msa0054130:CDS
CCCTGGCAAGAGATCTTCAA+TGG 0.496968 1_2:-8738233 Msa0054130:CDS
GGCGTTGATGGCGAAGTTGT+TGG 0.502083 1_2:-8738184 Msa0054130:CDS
TCATAACAATAGTGGAAAAG+TGG 0.503209 1_2:+8740054 None:intergenic
CTCCAGAGCTGTTATATGCA+GGG 0.504830 1_2:-8736913 Msa0054130:CDS
TGGTTTGTGATCTCGGGAAA+CGG 0.510321 1_2:+8736513 None:intergenic
CAAACGGTCACCAACAAGAA+TGG 0.514978 1_2:+8736956 None:intergenic
AGAAAGTACCTTAGGGAGAG+AGG 0.515490 1_2:+8740286 None:intergenic
GCTGATGATACACCTGTTAG+TGG 0.523474 1_2:-8739858 Msa0054130:CDS
TCTTCGTCTCGTAATAGCTC+TGG 0.524836 1_2:-8735222 Msa0054130:CDS
ATCCTATTTGTATTGTAGCT+AGG 0.526788 1_2:-8735027 Msa0054130:three_prime_UTR
TGGTAGTACACACAGTTACA+AGG 0.531486 1_2:+8735136 None:intergenic
ATATGTATCTACAGCCAGAA+TGG 0.533971 1_2:-8738283 Msa0054130:intron
TGCGGGAGGCTTTGTTATGT+GGG 0.548770 1_2:-8736458 Msa0054130:CDS
CAACATTTGCAACAAGCAAA+CGG 0.552780 1_2:+8736940 None:intergenic
CCATTGAAGATCTCTTGCCA+GGG 0.555774 1_2:+8738233 None:intergenic
GATACACCTGTTAGTGGTGG+AGG 0.559527 1_2:-8739852 Msa0054130:CDS
GTCACCAACAAGAATGGCAG+TGG 0.571832 1_2:+8736962 None:intergenic
TACTGGCTAGTGACGGACTG+TGG 0.572019 1_2:-8736090 Msa0054130:CDS
GTGTACTACCATGCAAGCAT+AGG 0.576254 1_2:-8735124 Msa0054130:three_prime_UTR
GTGGGATGTTGTCTCAAATG+AGG 0.577758 1_2:-8736071 Msa0054130:intron
GTGATCTCGGGAAACGGCAA+TGG 0.578024 1_2:+8736519 None:intergenic
CAGAATGGAAAATTCAGCTA+TGG 0.581697 1_2:-8738268 Msa0054130:CDS
AAATCAGAGTTAATTATAGG+AGG 0.587139 1_2:-8735167 Msa0054130:three_prime_UTR
TAACAATATTGCGTGTGTAG+AGG 0.594920 1_2:+8740001 None:intergenic
TTTACAGGAACTTGGAGAGT+CGG 0.596161 1_2:-8736353 Msa0054130:intron
ACCAAACCGATGAGAGGCAA+AGG 0.597114 1_2:-8736489 Msa0054130:CDS
TTACATGCAGACATTTGTAT+GGG 0.597576 1_2:+8734963 None:intergenic
TCTGCATGTAAATGTGGTGG+TGG 0.604473 1_2:-8734951 Msa0054130:three_prime_UTR
TTTGCTTGTTGCAAATGTTG+GGG 0.604673 1_2:-8736937 Msa0054130:CDS
AGGCAAAGGATAGAAGATGC+GGG 0.610771 1_2:-8736475 Msa0054130:CDS
TCCAGAGCTGTTATATGCAG+GGG 0.611886 1_2:-8736912 Msa0054130:CDS
AACCAGACCAAACCGATGAG+AGG 0.614896 1_2:-8736495 Msa0054130:CDS
ACTGGCTAGTGACGGACTGT+GGG 0.617935 1_2:-8736089 Msa0054130:CDS
GAGGCAAAGGATAGAAGATG+CGG 0.618851 1_2:-8736476 Msa0054130:CDS
TTTCTTATACTGGCTAGTGA+CGG 0.622894 1_2:-8736097 Msa0054130:CDS
AGAGCTGTTATATGCAGGGG+TGG 0.625035 1_2:-8736909 Msa0054130:CDS
CAAATGTCTGCATGTAAATG+TGG 0.625548 1_2:-8734957 Msa0054130:three_prime_UTR
CATTGAAGATCTCTTGCCAG+GGG 0.630301 1_2:+8738234 None:intergenic
ATACACCTGTTAGTGGTGGA+GGG 0.634978 1_2:-8739851 Msa0054130:CDS
TGATTTCAGAAATTCAGAGT+CGG 0.642009 1_2:+8737022 None:intergenic
ACAGGAACTTGGAGAGTCGG+TGG 0.642115 1_2:-8736350 Msa0054130:intron
TAGCAACATATCTATGCTAG+AGG 0.646458 1_2:+8735076 None:intergenic
ATGCAGAAGAAGCAGCAAAG+AGG 0.661189 1_2:-8735326 Msa0054130:CDS
GATGATACACCTGTTAGTGG+TGG 0.682529 1_2:-8739855 Msa0054130:CDS
ATGAAAGAAGCGTATCAGAG+AGG 0.696477 1_2:-8735300 Msa0054130:CDS
TGTCAGAAATGAATTTCGGG+TGG 0.709462 1_2:+8737186 None:intergenic
ATGTCTGCATGTAAATGTGG+TGG 0.715376 1_2:-8734954 Msa0054130:three_prime_UTR
TTAAAACTTTCAGGTCATGG+TGG 0.715764 1_2:-8737260 Msa0054130:intron
ATAACAATAGTGGAAAAGTG+GGG 0.726296 1_2:+8740056 None:intergenic
CAAAGGATAGAAGATGCGGG+AGG 0.739247 1_2:-8736472 Msa0054130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTATTTTGTATG+TGG - chr1_2:8739552-8739571 Msa0054130:intron 10.0%
!!! TAAATTTTTATTTTGTATGT+GGG - chr1_2:8739553-8739572 Msa0054130:intron 10.0%
!! AATGTAATTTAAAAACATAT+TGG + chr1_2:8739692-8739711 None:intergenic 10.0%
!!! TTTATCATTTTTGTTGTTTA+AGG - chr1_2:8735499-8735518 Msa0054130:intron 15.0%
!!! TTATTCTTAGGATTTTAAAT+CGG - chr1_2:8735723-8735742 Msa0054130:intron 15.0%
!!! GTTTTTTTTTTACTATTTCT+TGG - chr1_2:8736814-8736833 Msa0054130:intron 15.0%
!! AATATACCTATTATAAATGA+AGG - chr1_2:8737963-8737982 Msa0054130:intron 15.0%
!!! TATTTTTTTTTCTATCTCTA+TGG - chr1_2:8738872-8738891 Msa0054130:intron 15.0%
!! AAAATTAACCTACATATTTA+TGG - chr1_2:8739110-8739129 Msa0054130:intron 15.0%
!!! TAATATTTTACAAAAATGCT+AGG + chr1_2:8739381-8739400 None:intergenic 15.0%
!! TAAAATGTTACAAAGTAAAT+GGG + chr1_2:8739535-8739554 None:intergenic 15.0%
!! TTAAAATGTTACAAAGTAAA+TGG + chr1_2:8739536-8739555 None:intergenic 15.0%
!!! TCTAATTTTTATTTTATCCA+TGG - chr1_2:8739736-8739755 Msa0054130:intron 15.0%
!! ATCAAAAGTTAAACTTATTA+TGG - chr1_2:8740165-8740184 Msa0054130:intron 15.0%
!!! TAACTAAGATTTTTTCTTTG+TGG - chr1_2:8735146-8735165 Msa0054130:three_prime_UTR 20.0%
!!! AACTAAGATTTTTTCTTTGT+GGG - chr1_2:8735147-8735166 Msa0054130:three_prime_UTR 20.0%
!!! ATTGTTTCTTCTTCATTTTT+TGG - chr1_2:8735286-8735305 Msa0054130:CDS 20.0%
!! TTTGTTTGGTAAAAAATAGT+GGG - chr1_2:8735778-8735797 Msa0054130:intron 20.0%
!! AAGGTTAAAAATTGATATTG+CGG - chr1_2:8735838-8735857 Msa0054130:intron 20.0%
!!! ATGTTGTGATTTTGATATTA+TGG - chr1_2:8736305-8736324 Msa0054130:CDS 20.0%
!!! TTTAAAACCATTGTTATTCT+CGG - chr1_2:8736423-8736442 Msa0054130:intron 20.0%
!!! ATTTTCCTTTTGAAGTTATT+GGG - chr1_2:8737310-8737329 Msa0054130:intron 20.0%
!!! ATAAAGTATAAATCTGGTTT+TGG - chr1_2:8737471-8737490 Msa0054130:intron 20.0%
!!! ATTCATTAATAGCAAGTTTT+TGG - chr1_2:8737660-8737679 Msa0054130:intron 20.0%
!!! TTTAATCCTTTAAGAAGTAT+TGG - chr1_2:8737730-8737749 Msa0054130:intron 20.0%
!! TATATTATAGTATCAAGCAT+AGG + chr1_2:8737949-8737968 None:intergenic 20.0%
!! ATTGAAGAAAATCAGTTTAA+AGG + chr1_2:8738151-8738170 None:intergenic 20.0%
!! CTGTGTAAAAAAAATACAAA+TGG + chr1_2:8738205-8738224 None:intergenic 20.0%
!!! ATTTGATTTTCTAAAACTTG+AGG - chr1_2:8738426-8738445 Msa0054130:intron 20.0%
!! TATTTATCGGAAAAAGAAAA+AGG + chr1_2:8739258-8739277 None:intergenic 20.0%
!!! TGATTTGTATCAAGATTATT+TGG - chr1_2:8739315-8739334 Msa0054130:intron 20.0%
!! TATTAGCGAACAAATTTAAA+AGG - chr1_2:8739396-8739415 Msa0054130:intron 20.0%
!! ATTAGCGAACAAATTTAAAA+GGG - chr1_2:8739397-8739416 Msa0054130:intron 20.0%
!! TTAAAGCCTCTTAAAAAAAA+GGG - chr1_2:8739425-8739444 Msa0054130:intron 20.0%
!! AAAATGTTACAAAGTAAATG+GGG + chr1_2:8739534-8739553 None:intergenic 20.0%
!!! TTTTTATTTTATCCATGGAA+TGG - chr1_2:8739741-8739760 Msa0054130:intron 20.0%
!! AAAAAATATCGGAAATAAAC+AGG - chr1_2:8739768-8739787 Msa0054130:intron 20.0%
!! TCAAAATCAGAGTTAATTAT+AGG - chr1_2:8740095-8740114 Msa0054130:intron 20.0%
!!! ACATGAATATTGTTTTTGTT+TGG + chr1_2:8740363-8740382 None:intergenic 20.0%
!! GGAAAAAAAGAGACAAATTT+TGG + chr1_2:8734927-8734946 None:intergenic 25.0%
!! AGATGCAAAATTTTGTACAT+GGG + chr1_2:8735056-8735075 None:intergenic 25.0%
!! AAGATGCAAAATTTTGTACA+TGG + chr1_2:8735057-8735076 None:intergenic 25.0%
! TTTCTCTATATTTCCCTATT+GGG - chr1_2:8735075-8735094 Msa0054130:three_prime_UTR 25.0%
!!! ACTAAGATTTTTTCTTTGTG+GGG - chr1_2:8735148-8735167 Msa0054130:three_prime_UTR 25.0%
! TGAATATTCAACTTGTGATA+TGG - chr1_2:8735340-8735359 Msa0054130:CDS 25.0%
! GAATATTCAACTTGTGATAT+GGG - chr1_2:8735341-8735360 Msa0054130:CDS 25.0%
!!! AAGGTTTTAAATTGATGTTG+CGG - chr1_2:8735518-8735537 Msa0054130:intron 25.0%
! TTAAAACCTTAAACAAACCA+TGG + chr1_2:8735578-8735597 None:intergenic 25.0%
! TTAAAACCATGGTTATTCTT+AGG - chr1_2:8735711-8735730 Msa0054130:intron 25.0%
! TAAAATCCTAAGAATAACCA+TGG + chr1_2:8735720-8735739 None:intergenic 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG - chr1_2:8735777-8735796 Msa0054130:intron 25.0%
!! ACATAGAATGGTTTTTCTTA+AGG - chr1_2:8735819-8735838 Msa0054130:intron 25.0%
!! TTTAAATTGTTGTTGAGATG+CGG - chr1_2:8736053-8736072 Msa0054130:intron 25.0%
! GTGAAAAATTATCTTGATGT+GGG - chr1_2:8736127-8736146 Msa0054130:CDS 25.0%
! TGAAAAATTATCTTGATGTG+GGG - chr1_2:8736128-8736147 Msa0054130:intron 25.0%
! CAATTGTAATCGCAATATAA+AGG + chr1_2:8736189-8736208 None:intergenic 25.0%
! TAAAACCATGATTATTCTCA+AGG - chr1_2:8736227-8736246 Msa0054130:intron 25.0%
! TAAAACCTTGAGAATAATCA+TGG + chr1_2:8736235-8736254 None:intergenic 25.0%
!! TTTAAATTGTTGTTACGATG+CGG - chr1_2:8736251-8736270 Msa0054130:intron 25.0%
!! TTAAAACCATTGTTATTCTC+GGG - chr1_2:8736424-8736443 Msa0054130:intron 25.0%
!!! CATTTTAATACCATGGTTAT+AGG - chr1_2:8736617-8736636 Msa0054130:intron 25.0%
!! TCTTTGTATTTTTCTGATCA+TGG - chr1_2:8736761-8736780 Msa0054130:intron 25.0%
! GTAAATAAAAAAGCCAGAAT+AGG + chr1_2:8736891-8736910 None:intergenic 25.0%
!!! TTCTGGCTTTTTTATTTACT+AGG - chr1_2:8736892-8736911 Msa0054130:intron 25.0%
!! TTTTATGAGACAAGAATTGA+CGG - chr1_2:8737060-8737079 Msa0054130:intron 25.0%
!! ACATCTTATTAGTTCTCTAT+GGG + chr1_2:8737247-8737266 None:intergenic 25.0%
!! AACATCTTATTAGTTCTCTA+TGG + chr1_2:8737248-8737267 None:intergenic 25.0%
!!! TTTCCTTAATTTGTTTCTGT+CGG - chr1_2:8737284-8737303 Msa0054130:intron 25.0%
!!! GATTTTCCTTTTGAAGTTAT+TGG - chr1_2:8737309-8737328 Msa0054130:intron 25.0%
!!! TTTTGAAGTTATTGGGAAAT+GGG - chr1_2:8737317-8737336 Msa0054130:intron 25.0%
! TGTCTCATAAAGTATAAATC+TGG - chr1_2:8737465-8737484 Msa0054130:intron 25.0%
!!! GTTGTTTTGATTATTCTGAT+CGG - chr1_2:8737493-8737512 Msa0054130:intron 25.0%
!!! ACTTGCTATTAATGAATTGA+AGG + chr1_2:8737657-8737676 None:intergenic 25.0%
! AGCTAACCTTCATTTATAAT+AGG + chr1_2:8737972-8737991 None:intergenic 25.0%
!! CTTTCTTGTTTAAAACTTTC+AGG - chr1_2:8737996-8738015 Msa0054130:intron 25.0%
! GTAAAAAAAATACAAATGGC+AGG + chr1_2:8738201-8738220 None:intergenic 25.0%
!! CATTTAGAAAGAAAAGCATA+GGG + chr1_2:8738512-8738531 None:intergenic 25.0%
!! TCATTTAGAAAGAAAAGCAT+AGG + chr1_2:8738513-8738532 None:intergenic 25.0%
! ACTTGTGGATGAAATATATA+GGG - chr1_2:8738558-8738577 Msa0054130:intron 25.0%
! ATTGTTTGATTAGATTGTCA+AGG - chr1_2:8738597-8738616 Msa0054130:intron 25.0%
!! ATGTTTTTCTCAATTCTCAA+CGG + chr1_2:8738662-8738681 None:intergenic 25.0%
!! AACTTTTCGATTTCAAGAAT+TGG - chr1_2:8738685-8738704 Msa0054130:intron 25.0%
! TACTTAAAACCATACTTTAC+AGG - chr1_2:8738897-8738916 Msa0054130:intron 25.0%
! AGAGATGAAATATCAAAGAA+TGG + chr1_2:8739045-8739064 None:intergenic 25.0%
! AAGGAAAGGAAAAAAAACAA+AGG + chr1_2:8739239-8739258 None:intergenic 25.0%
! CGAAAATGCACTATATTTAT+CGG + chr1_2:8739271-8739290 None:intergenic 25.0%
! CAATTCATTTATATCTCTTG+TGG + chr1_2:8739297-8739316 None:intergenic 25.0%
! CTTAAAGCCTCTTAAAAAAA+AGG - chr1_2:8739424-8739443 Msa0054130:intron 25.0%
! AATCTACATAAGGAAAGTAA+AGG + chr1_2:8739476-8739495 None:intergenic 25.0%
! ACTTTCCTTATGTAGATTAA+AGG - chr1_2:8739478-8739497 Msa0054130:intron 25.0%
!!! ATTTTTATTTTGTATGTGGG+TGG - chr1_2:8739556-8739575 Msa0054130:intron 25.0%
! AAAAATTAGAGAAGACGTTA+TGG + chr1_2:8739726-8739745 None:intergenic 25.0%
!!! TATTTTTTGTTTCCATTCCA+TGG + chr1_2:8739756-8739775 None:intergenic 25.0%
! GGAATGGAAACAAAAAATAT+CGG - chr1_2:8739757-8739776 Msa0054130:intron 25.0%
!! AAAAAAGTTTGAGTTAGAGT+TGG + chr1_2:8739874-8739893 None:intergenic 25.0%
!!! ACTTTTTTCTACTTTTCTTC+AGG - chr1_2:8739886-8739905 Msa0054130:CDS 25.0%
! AAATCAGAGTTAATTATAGG+AGG - chr1_2:8740098-8740117 Msa0054130:intron 25.0%
!!! GAATATTGTTTTTGTTTGGA+AGG + chr1_2:8740359-8740378 None:intergenic 25.0%
! TCATGAAAAACAAGATAACA+AGG + chr1_2:8740399-8740418 None:intergenic 25.0%
CTTTCTCTATATTTCCCTAT+TGG - chr1_2:8735074-8735093 Msa0054130:three_prime_UTR 30.0%
! AAACTTTTGATCACCCAATA+GGG + chr1_2:8735091-8735110 None:intergenic 30.0%
! ATAACAATAGTGGAAAAGTG+GGG + chr1_2:8735212-8735231 None:intergenic 30.0%
! CATAACAATAGTGGAAAAGT+GGG + chr1_2:8735213-8735232 None:intergenic 30.0%
! TCATAACAATAGTGGAAAAG+TGG + chr1_2:8735214-8735233 None:intergenic 30.0%
CCAAGTTATCATAACAATAG+TGG + chr1_2:8735222-8735241 None:intergenic 30.0%
CCACTATTGTTATGATAACT+TGG - chr1_2:8735219-8735238 Msa0054130:CDS 30.0%
AGGTTATTCTTGCTTGAAAA+AGG + chr1_2:8735247-8735266 None:intergenic 30.0%
!! GAATAACCATGGTTTGTTTA+AGG - chr1_2:8735569-8735588 Msa0054130:intron 30.0%
! CAAACGGAAATTTAAAACCA+TGG - chr1_2:8735700-8735719 Msa0054130:intron 30.0%
!!! TTGCATGTTGTGTTACTTTT+CGG - chr1_2:8735754-8735773 Msa0054130:intron 30.0%
! ATAAGCTAGCTTACATAGAA+TGG - chr1_2:8735807-8735826 Msa0054130:intron 30.0%
AAAATTGATATTGCGGTTGT+AGG - chr1_2:8735845-8735864 Msa0054130:intron 30.0%
TGAAAATTGTCTTGATGTTG+TGG - chr1_2:8735909-8735928 Msa0054130:intron 30.0%
GAAAATTGTCTTGATGTTGT+GGG - chr1_2:8735910-8735929 Msa0054130:intron 30.0%
AAAAACCATGGTTATTCTCA+AGG - chr1_2:8736029-8736048 Msa0054130:intron 30.0%
TAAAACCTTGAGAATAACCA+TGG + chr1_2:8736037-8736056 None:intergenic 30.0%
! TTAAATTGTTGTTGAGATGC+GGG - chr1_2:8736054-8736073 Msa0054130:intron 30.0%
CGTGAAAAATTATCTTGATG+TGG - chr1_2:8736126-8736145 Msa0054130:CDS 30.0%
ATTACAATTGTAGTTGCAGA+CGG - chr1_2:8736199-8736218 Msa0054130:intron 30.0%
! TTAAATTGTTGTTACGATGC+GGG - chr1_2:8736252-8736271 Msa0054130:intron 30.0%
CAACATAACCACAACATAAA+AGG + chr1_2:8736291-8736310 None:intergenic 30.0%
CAATTACTGCGACAATATAA+AGG + chr1_2:8736387-8736406 None:intergenic 30.0%
TTATATTGTCGCAGTAATTG+TGG - chr1_2:8736387-8736406 Msa0054130:intron 30.0%
! TAAAACCATTGTTATTCTCG+GGG - chr1_2:8736425-8736444 Msa0054130:intron 30.0%
! GTGAATGTTAACTTGATATG+CGG - chr1_2:8736517-8736536 Msa0054130:CDS 30.0%
CAATTGTAGCTGGAATATAA+AGG + chr1_2:8736584-8736603 None:intergenic 30.0%
AACAACAATACCTATAACCA+TGG + chr1_2:8736630-8736649 None:intergenic 30.0%
! ATGGTTATAGGTATTGTTGT+TGG - chr1_2:8736629-8736648 Msa0054130:intron 30.0%
TGGTTAATGTCATTCATACT+TGG - chr1_2:8736649-8736668 Msa0054130:intron 30.0%
TAATGTCATTCATACTTGGA+AGG - chr1_2:8736653-8736672 Msa0054130:intron 30.0%
CCTAAAGTCGGAAAAATTAA+AGG + chr1_2:8736921-8736940 None:intergenic 30.0%
!! CCTTTAATTTTTCCGACTTT+AGG - chr1_2:8736918-8736937 Msa0054130:CDS 30.0%
TACCATCAAAAACTCCAAAA+AGG + chr1_2:8737107-8737126 None:intergenic 30.0%
!! CTATCCATGCTACTTATTTT+TGG - chr1_2:8737159-8737178 Msa0054130:intron 30.0%
GTTGTAGTTGAAACATTGAT+CGG - chr1_2:8737202-8737221 Msa0054130:CDS 30.0%
CATTTCCCAATAACTTCAAA+AGG + chr1_2:8737318-8737337 None:intergenic 30.0%
!!! CTTTTGAAGTTATTGGGAAA+TGG - chr1_2:8737316-8737335 Msa0054130:intron 30.0%
! TCTTTGAGAATAATTTCGAG+AGG - chr1_2:8737572-8737591 Msa0054130:intron 30.0%
! CAACAGAAAGTATAAGACAA+TGG + chr1_2:8737603-8737622 None:intergenic 30.0%
! GGTGCATGTTTTTCTTTATA+TGG - chr1_2:8737681-8737700 Msa0054130:intron 30.0%
! TGTTTAAAACTTTCAGGTCA+TGG - chr1_2:8738002-8738021 Msa0054130:intron 30.0%
GGCTGATCAAATTACTAAAT+AGG + chr1_2:8738061-8738080 None:intergenic 30.0%
!! TTGGTGTCAGAAATGAATTT+CGG + chr1_2:8738086-8738105 None:intergenic 30.0%
TTAAAGGATCAAACTGTGAT+AGG + chr1_2:8738135-8738154 None:intergenic 30.0%
TGATTTCAGAAATTCAGAGT+CGG + chr1_2:8738246-8738265 None:intergenic 30.0%
AATAATCAAAACAGAGATGC+TGG - chr1_2:8738269-8738288 Msa0054130:CDS 30.0%
TAATCGTTATGGTTGTCAAA+TGG - chr1_2:8738402-8738421 Msa0054130:intron 30.0%
TGAGGAAATCATAATCGTTA+TGG - chr1_2:8738444-8738463 Msa0054130:intron 30.0%
TAATCGTTATGGTTGTCAAA+TGG - chr1_2:8738402-8738421 Msa0054130:intron 30.0%
!! ACTATTTTTCGTATCACTTG+TGG - chr1_2:8738543-8738562 Msa0054130:intron 30.0%
CACTTGTGGATGAAATATAT+AGG - chr1_2:8738557-8738576 Msa0054130:intron 30.0%
!! GGTGTTACTACATTTGAATT+TGG - chr1_2:8738624-8738643 Msa0054130:intron 30.0%
! TCATCTTATTGTTAGCTCTT+GGG - chr1_2:8738839-8738858 Msa0054130:intron 30.0%
! ATTCAGGTGTGTTTCTAATA+TGG - chr1_2:8739005-8739024 Msa0054130:intron 30.0%
TTCTCTTGAGTTTCTTATAC+TGG - chr1_2:8739158-8739177 Msa0054130:intron 30.0%
ATCGGAAAAAGAAAAAGGAA+AGG + chr1_2:8739253-8739272 None:intergenic 30.0%
!!! AGAGAACCCTTTTTTTTAAG+AGG + chr1_2:8739434-8739453 None:intergenic 30.0%
TGCTATGATTAAACCAATTG+AGG - chr1_2:8739916-8739935 Msa0054130:CDS 30.0%
! ACTCTCTTACTTCCATATTT+TGG - chr1_2:8740214-8740233 Msa0054130:intron 30.0%
! CTCTCTTACTTCCATATTTT+GGG - chr1_2:8740215-8740234 Msa0054130:intron 30.0%
ACAAATAGGATCCCAAAATA+TGG + chr1_2:8740229-8740248 None:intergenic 30.0%
ATCCTATTTGTATTGTAGCT+AGG - chr1_2:8740238-8740257 Msa0054130:intron 30.0%
TTCCTAGCTACAATACAAAT+AGG + chr1_2:8740243-8740262 None:intergenic 30.0%
! AAATCGTTTTGTAAAGAGTG+TGG - chr1_2:8740263-8740282 Msa0054130:intron 30.0%
TTACATGCAGACATTTGTAT+GGG + chr1_2:8740305-8740324 None:intergenic 30.0%
TTTACATGCAGACATTTGTA+TGG + chr1_2:8740306-8740325 None:intergenic 30.0%
!! TAGAGAGAGAAAGTACCTTA+GGG + chr1_2:8734989-8735008 None:intergenic 35.0%
!! TTAGAGAGAGAAAGTACCTT+AGG + chr1_2:8734990-8735009 None:intergenic 35.0%
! CAAACTTTTGATCACCCAAT+AGG + chr1_2:8735092-8735111 None:intergenic 35.0%
TAACAATATTGCGTGTGTAG+AGG + chr1_2:8735267-8735286 None:intergenic 35.0%
! TGTTTTATCACCTTCAAGTC+AGG - chr1_2:8735376-8735395 Msa0054130:intron 35.0%
TTTGATCCTGAGAATAACCA+TGG - chr1_2:8735558-8735577 Msa0054130:intron 35.0%
AACAAACCATGGTTATTCTC+AGG + chr1_2:8735567-8735586 None:intergenic 35.0%
CAACTGCAGTCACAATATAA+AGG + chr1_2:8735674-8735693 None:intergenic 35.0%
!!! TGTTACTTTTCGGCTTTGTT+TGG - chr1_2:8735764-8735783 Msa0054130:intron 35.0%
! TGTTGTCTTTTGTGGTTGTT+TGG - chr1_2:8735871-8735890 Msa0054130:intron 35.0%
CTGACAGCAATTAAAAACCA+TGG - chr1_2:8736017-8736036 Msa0054130:intron 35.0%
CAACATAAAAGGCAACAAAC+AGG + chr1_2:8736280-8736299 None:intergenic 35.0%
!! GTTTGTTGCCTTTTATGTTG+TGG - chr1_2:8736280-8736299 Msa0054130:CDS 35.0%
TAAAACCCCGAGAATAACAA+TGG + chr1_2:8736433-8736452 None:intergenic 35.0%
!! GTTACGTTGCGATTTTGATA+TGG - chr1_2:8736495-8736514 Msa0054130:CDS 35.0%
TAGCTGGAATATAAAGGCTT+TGG + chr1_2:8736578-8736597 None:intergenic 35.0%
!!! ATTCGCAACTTGGTTTTATG+TGG - chr1_2:8736732-8736751 Msa0054130:intron 35.0%
GGTTCAAGACGAATGTTTAT+TGG - chr1_2:8736782-8736801 Msa0054130:intron 35.0%
GAATGTCTTTAGTCCTATTC+TGG - chr1_2:8736875-8736894 Msa0054130:intron 35.0%
TCATTGAATCGACCTAAAGT+CGG + chr1_2:8736933-8736952 None:intergenic 35.0%
ATATGTATCTACAGCCAGAA+TGG - chr1_2:8736982-8737001 Msa0054130:CDS 35.0%
! CATAGCTGAATTTTCCATTC+TGG + chr1_2:8736999-8737018 None:intergenic 35.0%
CAGAATGGAAAATTCAGCTA+TGG - chr1_2:8736997-8737016 Msa0054130:CDS 35.0%
GTAGCATGGATAGAAAGAAA+TGG + chr1_2:8737152-8737171 None:intergenic 35.0%
!!! TCCATGCTACTTATTTTTGG+AGG - chr1_2:8737162-8737181 Msa0054130:intron 35.0%
ACCTCCAAAAATAAGTAGCA+TGG + chr1_2:8737166-8737185 None:intergenic 35.0%
!!! ATTTTTGGAGGTACTAAGCA+AGG - chr1_2:8737174-8737193 Msa0054130:CDS 35.0%
!!! TTTTTGGAGGTACTAAGCAA+GGG - chr1_2:8737175-8737194 Msa0054130:CDS 35.0%
TAAGGAAACACTAAGTCACA+TGG + chr1_2:8737355-8737374 None:intergenic 35.0%
TTTCCTTATGCAATGCTTCT+AGG - chr1_2:8737367-8737386 Msa0054130:intron 35.0%
CACACATAAAGAGGAAAGTT+TGG - chr1_2:8737426-8737445 Msa0054130:intron 35.0%
CAAGAGCCAATACTTCTTAA+AGG + chr1_2:8737739-8737758 None:intergenic 35.0%
GTGTAGTTAAATTGTGACCA+TGG + chr1_2:8737904-8737923 None:intergenic 35.0%
! TTAAAACTTTCAGGTCATGG+TGG - chr1_2:8738005-8738024 Msa0054130:intron 35.0%
! TGGTGTCAGAAATGAATTTC+GGG + chr1_2:8738085-8738104 None:intergenic 35.0%
CAACATTTGCAACAAGCAAA+CGG + chr1_2:8738328-8738347 None:intergenic 35.0%
! GTTTGCTTGTTGCAAATGTT+GGG - chr1_2:8738327-8738346 Msa0054130:intron 35.0%
! TTTGCTTGTTGCAAATGTTG+GGG - chr1_2:8738328-8738347 Msa0054130:intron 35.0%
TAGTAGCTGCATAATCGTTA+TGG - chr1_2:8738391-8738410 Msa0054130:intron 35.0%
TTATGGTTGTCAAATGGTTC+TGG - chr1_2:8738461-8738480 Msa0054130:intron 35.0%
TGATTAGATTGTCAAGGTGT+AGG - chr1_2:8738603-8738622 Msa0054130:intron 35.0%
! GTCATCTTATTGTTAGCTCT+TGG - chr1_2:8738838-8738857 Msa0054130:intron 35.0%
AACCATACTTTACAGGAACT+TGG - chr1_2:8738904-8738923 Msa0054130:intron 35.0%
TAGAAACACACCTGAATTTC+CGG + chr1_2:8739002-8739021 None:intergenic 35.0%
CTGCAAGACCATAAATATGT+AGG + chr1_2:8739121-8739140 None:intergenic 35.0%
! CTACATATTTATGGTCTTGC+AGG - chr1_2:8739119-8739138 Msa0054130:intron 35.0%
! TTTCTTATACTGGCTAGTGA+CGG - chr1_2:8739168-8739187 Msa0054130:intron 35.0%
TCGCTCCTTTAATCTACATA+AGG + chr1_2:8739486-8739505 None:intergenic 35.0%
AACATTGCTTTCAGTGTTTC+CGG + chr1_2:8739634-8739653 None:intergenic 35.0%
ATCAATCAGAAATGACTCCT+TGG + chr1_2:8739808-8739827 None:intergenic 35.0%
AAGAACCTTGATTGTTCATC+AGG + chr1_2:8740027-8740046 None:intergenic 35.0%
!! TTTTGATTCCTATGCTTGCA+TGG + chr1_2:8740152-8740171 None:intergenic 35.0%
TAGCAACATATCTATGCTAG+AGG + chr1_2:8740192-8740211 None:intergenic 35.0%
GTATGGGAAGTTAAAAACTC+TGG + chr1_2:8740289-8740308 None:intergenic 35.0%
CAAATGTCTGCATGTAAATG+TGG - chr1_2:8740308-8740327 Msa0054130:five_prime_UTR 35.0%
! GAAAAGTGGGGTCTGTTTTA+TGG + chr1_2:8735200-8735219 None:intergenic 40.0%
ACTGCAGTTGTAGTTGCAAA+CGG - chr1_2:8735684-8735703 Msa0054130:intron 40.0%
! AGGATTTTAAATCGGCGTTG+CGG - chr1_2:8735731-8735750 Msa0054130:intron 40.0%
! GTAGGTTGTGTTGTCTTTTG+TGG - chr1_2:8735863-8735882 Msa0054130:intron 40.0%
CTTGATGTTGTGGGAAATTG+AGG - chr1_2:8735919-8735938 Msa0054130:intron 40.0%
TGGGAAATTGAGGATAGATG+CGG - chr1_2:8735929-8735948 Msa0054130:intron 40.0%
! CAATTGTGGTTGTGTTGTTG+AGG - chr1_2:8735955-8735974 Msa0054130:intron 40.0%
AAACGTAACCACAACACAGA+AGG + chr1_2:8736093-8736112 None:intergenic 40.0%
TCTGTGTTGTGGTTACGTTT+CGG - chr1_2:8736093-8736112 Msa0054130:CDS 40.0%
TTGATATGCTGCTGCATATG+TGG - chr1_2:8736337-8736356 Msa0054130:CDS 40.0%
CAACACAAAAGGCAACAAAC+AGG + chr1_2:8736473-8736492 None:intergenic 40.0%
!! GTTTGTTGCCTTTTGTGTTG+TGG - chr1_2:8736473-8736492 Msa0054130:CDS 40.0%
CAACGTAACCACAACACAAA+AGG + chr1_2:8736484-8736503 None:intergenic 40.0%
TTGATATGCGGTTGCAATTG+TGG - chr1_2:8736529-8736548 Msa0054130:intron 40.0%
TGATATGCGGTTGCAATTGT+GGG - chr1_2:8736530-8736549 Msa0054130:intron 40.0%
TTGCAATTGTGGGTGTGATA+TGG - chr1_2:8736540-8736559 Msa0054130:intron 40.0%
TTGTGGGTGTGATATGGTTT+CGG - chr1_2:8736546-8736565 Msa0054130:intron 40.0%
!! CAGACGGCATTTTAATACCA+TGG - chr1_2:8736610-8736629 Msa0054130:intron 40.0%
!!! GGCCTTTTTGGAGTTTTTGA+TGG - chr1_2:8737102-8737121 Msa0054130:intron 40.0%
CCACCGACAGAAACAAATTA+AGG + chr1_2:8737290-8737309 None:intergenic 40.0%
!! CCTTAATTTGTTTCTGTCGG+TGG - chr1_2:8737287-8737306 Msa0054130:intron 40.0%
!! AAGCCTAGAAGCATTGCATA+AGG + chr1_2:8737373-8737392 None:intergenic 40.0%
AGAAGAAAAACCTCCTGAGA+CGG + chr1_2:8737542-8737561 None:intergenic 40.0%
! CGTGTTTATAGGGCAGATTT+TGG + chr1_2:8737786-8737805 None:intergenic 40.0%
GCCACAATGACGTGTTTATA+GGG + chr1_2:8737796-8737815 None:intergenic 40.0%
ATGCCTTCACAAATTGCCTA+TGG - chr1_2:8737836-8737855 Msa0054130:intron 40.0%
CTTCACAAATTGCCTATGGT+GGG - chr1_2:8737840-8737859 Msa0054130:intron 40.0%
TTCACAAATTGCCTATGGTG+GGG - chr1_2:8737841-8737860 Msa0054130:intron 40.0%
GATTTATTTACCCCCACCAT+AGG + chr1_2:8737855-8737874 None:intergenic 40.0%
TGTCAGAAATGAATTTCGGG+TGG + chr1_2:8738082-8738101 None:intergenic 40.0%
TCTGACACCAAATCTGCAAT+AGG - chr1_2:8738095-8738114 Msa0054130:intron 40.0%
CTACAGACCTATTGCAGATT+TGG + chr1_2:8738105-8738124 None:intergenic 40.0%
! CGTTTGCTTGTTGCAAATGT+TGG - chr1_2:8738326-8738345 Msa0054130:intron 40.0%
! TTTGGTCTGGTTTGTGATCT+CGG + chr1_2:8738762-8738781 None:intergenic 40.0%
TTCTATCCTTTGCCTCTCAT+CGG + chr1_2:8738785-8738804 None:intergenic 40.0%
CTCCAAGTTCCTGTAAAGTA+TGG + chr1_2:8738909-8738928 None:intergenic 40.0%
TTTACAGGAACTTGGAGAGT+CGG - chr1_2:8738912-8738931 Msa0054130:intron 40.0%
CAGCAACAACGTATTGCTTA+AGG + chr1_2:8738977-8738996 None:intergenic 40.0%
! TATGGTCTTGCAGGAAGAAA+AGG - chr1_2:8739128-8739147 Msa0054130:intron 40.0%
AGTAAAGGCGAAGGTCTATT+TGG + chr1_2:8739461-8739480 None:intergenic 40.0%
CATAAGGAAAGTAAAGGCGA+AGG + chr1_2:8739470-8739489 None:intergenic 40.0%
AACTAGAGAGACTGCATTTC+CGG - chr1_2:8739612-8739631 Msa0054130:intron 40.0%
!! AGGCTCTAAAAATCGAACCA+AGG - chr1_2:8739788-8739807 Msa0054130:intron 40.0%
! ATGAAAGAAGCGTATCAGAG+AGG - chr1_2:8739965-8739984 Msa0054130:CDS 40.0%
CGTTTCCTGATGAACAATCA+AGG - chr1_2:8740019-8740038 Msa0054130:CDS 40.0%
TGGTAGTACACACAGTTACA+AGG + chr1_2:8740132-8740151 None:intergenic 40.0%
ATGTCTGCATGTAAATGTGG+TGG - chr1_2:8740311-8740330 Msa0054130:five_prime_UTR 40.0%
!! AGAAAGTACCTTAGGGAGAG+AGG + chr1_2:8734982-8735001 None:intergenic 45.0%
GCTGATGATACACCTGTTAG+TGG - chr1_2:8735407-8735426 Msa0054130:intron 45.0%
GATGATACACCTGTTAGTGG+TGG - chr1_2:8735410-8735429 Msa0054130:intron 45.0%
! ATACACCTGTTAGTGGTGGA+GGG - chr1_2:8735414-8735433 Msa0054130:intron 45.0%
TTGCGGTTGTATGTTGTACG+AGG - chr1_2:8735535-8735554 Msa0054130:intron 45.0%
CAACACAGAAGGCAACAAAC+AGG + chr1_2:8736082-8736101 None:intergenic 45.0%
! GTTTGTTGCCTTCTGTGTTG+TGG - chr1_2:8736082-8736101 Msa0054130:CDS 45.0%
GCAGTAATTGTGGTTGCAGA+TGG - chr1_2:8736397-8736416 Msa0054130:intron 45.0%
!!! GGGGTTTTAAGTTGCTGTTG+TGG - chr1_2:8736444-8736463 Msa0054130:intron 45.0%
TCTGCAACTGCAATTGTAGC+TGG + chr1_2:8736594-8736613 None:intergenic 45.0%
GCTACAATTGCAGTTGCAGA+CGG - chr1_2:8736594-8736613 Msa0054130:intron 45.0%
CATTGAAGATCTCTTGCCAG+GGG + chr1_2:8737034-8737053 None:intergenic 45.0%
CCATTGAAGATCTCTTGCCA+GGG + chr1_2:8737035-8737054 None:intergenic 45.0%
TCCATTGAAGATCTCTTGCC+AGG + chr1_2:8737036-8737055 None:intergenic 45.0%
! ACAAGAATTGACGGCGTTGA+TGG - chr1_2:8737069-8737088 Msa0054130:intron 45.0%
AACATTGATCGGACACGTGA+TGG - chr1_2:8737213-8737232 Msa0054130:CDS 45.0%
ACATGCACGCACACATAAAG+AGG - chr1_2:8737417-8737436 Msa0054130:intron 45.0%
!!! CTTTTTTCGAACACCGTCTC+AGG - chr1_2:8737526-8737545 Msa0054130:intron 45.0%
TTGACCAGTGTTGTCGATGA+AGG - chr1_2:8737756-8737775 Msa0054130:intron 45.0%
GCCCTATAAACACGTCATTG+TGG - chr1_2:8737792-8737811 Msa0054130:intron 45.0%
GGCCACAATGACGTGTTTAT+AGG + chr1_2:8737797-8737816 None:intergenic 45.0%
AAACACGTCATTGTGGCCTA+TGG - chr1_2:8737799-8737818 Msa0054130:intron 45.0%
! ATTTGTGAAGGCATGCTCCA+CGG + chr1_2:8737830-8737849 None:intergenic 45.0%
CCACCATAGGCAATTTGTGA+AGG + chr1_2:8737842-8737861 None:intergenic 45.0%
CCTTCACAAATTGCCTATGG+TGG - chr1_2:8737839-8737858 Msa0054130:intron 45.0%
TCACAAATTGCCTATGGTGG+GGG - chr1_2:8737842-8737861 Msa0054130:intron 45.0%
CAAACGGTCACCAACAAGAA+TGG + chr1_2:8738312-8738331 None:intergenic 45.0%
ACTCCAGAGCTGTTATATGC+AGG - chr1_2:8738351-8738370 Msa0054130:intron 45.0%
CTCCAGAGCTGTTATATGCA+GGG - chr1_2:8738352-8738371 Msa0054130:intron 45.0%
TCCAGAGCTGTTATATGCAG+GGG - chr1_2:8738353-8738372 Msa0054130:intron 45.0%
GTTATATGCAGGGGTGGAAA+TGG - chr1_2:8738362-8738381 Msa0054130:intron 45.0%
! TGGTTTGTGATCTCGGGAAA+CGG + chr1_2:8738755-8738774 None:intergenic 45.0%
! TTGGTCTGGTTTGTGATCTC+GGG + chr1_2:8738761-8738780 None:intergenic 45.0%
GAGGCAAAGGATAGAAGATG+CGG - chr1_2:8738789-8738808 Msa0054130:intron 45.0%
AGGCAAAGGATAGAAGATGC+GGG - chr1_2:8738790-8738809 Msa0054130:intron 45.0%
GCAATACGTTGTTGCTGATC+CGG - chr1_2:8738980-8738999 Msa0054130:intron 45.0%
TGTTGCTGATCCGGAAATTC+AGG - chr1_2:8738989-8739008 Msa0054130:intron 45.0%
GTGGGATGTTGTCTCAAATG+AGG - chr1_2:8739194-8739213 Msa0054130:intron 45.0%
TTGTATGTGGGTGGCTGAAA+TGG - chr1_2:8739565-8739584 Msa0054130:intron 45.0%
GGCTGAAATGGCAATTGTTG+TGG - chr1_2:8739577-8739596 Msa0054130:intron 45.0%
GCTTCTTCTGCATCCTCAAT+TGG + chr1_2:8739932-8739951 None:intergenic 45.0%
ATGCAGAAGAAGCAGCAAAG+AGG - chr1_2:8739939-8739958 Msa0054130:CDS 45.0%
TCTTCGTCTCGTAATAGCTC+TGG - chr1_2:8740043-8740062 Msa0054130:exon 45.0%
GTGTACTACCATGCAAGCAT+AGG - chr1_2:8740141-8740160 Msa0054130:intron 45.0%
TCTGCATGTAAATGTGGTGG+TGG - chr1_2:8740314-8740333 Msa0054130:five_prime_UTR 45.0%
!! AAAAAAAATTAAATAATTAC+AGG + chr1_2:8737626-8737645 None:intergenic 5.0%
TCCCTTCTCTCTCTCTCTCA+TGG - chr1_2:8734944-8734963 Msa0054130:three_prime_UTR 50.0%
CCCATGAGAGAGAGAGAGAA+GGG + chr1_2:8734948-8734967 None:intergenic 50.0%
CCCTTCTCTCTCTCTCTCAT+GGG - chr1_2:8734945-8734964 Msa0054130:three_prime_UTR 50.0%
TCCCATGAGAGAGAGAGAGA+AGG + chr1_2:8734949-8734968 None:intergenic 50.0%
TCTCTTCTCCTCTCTCCCTA+AGG - chr1_2:8734971-8734990 Msa0054130:three_prime_UTR 50.0%
! GCAGCATGAACCTGACTTGA+AGG + chr1_2:8735389-8735408 None:intergenic 50.0%
GATACACCTGTTAGTGGTGG+AGG - chr1_2:8735413-8735432 Msa0054130:intron 50.0%
CCATTGTGGTTGTGTTGCAG+AGG + chr1_2:8735612-8735631 None:intergenic 50.0%
CCTCTGCAACACAACCACAA+TGG - chr1_2:8735609-8735628 Msa0054130:intron 50.0%
GATAGATGCGGCTGCAATTG+TGG - chr1_2:8735941-8735960 Msa0054130:intron 50.0%
CATATGTGGTTGCGTTGTCG+AGG - chr1_2:8736351-8736370 Msa0054130:intron 50.0%
TGGGTGTGATATGGTTTCGG+CGG - chr1_2:8736549-8736568 Msa0054130:intron 50.0%
TGCTCTGCAGATTCGCAACT+TGG - chr1_2:8736722-8736741 Msa0054130:intron 50.0%
TATGGATATGCTAGCTCCCC+TGG - chr1_2:8737015-8737034 Msa0054130:CDS 50.0%
CCCTGGCAAGAGATCTTCAA+TGG - chr1_2:8737032-8737051 Msa0054130:CDS 50.0%
!!! GGCGAAGTTGTTGGCCTTTT+TGG - chr1_2:8737090-8737109 Msa0054130:intron 50.0%
! TTTTCGAACACCGTCTCAGG+AGG - chr1_2:8737529-8737548 Msa0054130:intron 50.0%
CCTTCCTTCATCGACAACAC+TGG + chr1_2:8737763-8737782 None:intergenic 50.0%
CCAGTGTTGTCGATGAAGGA+AGG - chr1_2:8737760-8737779 Msa0054130:intron 50.0%
GCTTCCACTGCCATTCTTGT+TGG - chr1_2:8738299-8738318 Msa0054130:intron 50.0%
GTCACCAACAAGAATGGCAG+TGG + chr1_2:8738306-8738325 None:intergenic 50.0%
ACCCCTGCATATAACAGCTC+TGG + chr1_2:8738357-8738376 None:intergenic 50.0%
AGAGCTGTTATATGCAGGGG+TGG - chr1_2:8738356-8738375 Msa0054130:intron 50.0%
ATGCAGGGGTGGAAATGGTA+AGG - chr1_2:8738367-8738386 Msa0054130:intron 50.0%
AACCAGACCAAACCGATGAG+AGG - chr1_2:8738770-8738789 Msa0054130:intron 50.0%
ACCAAACCGATGAGAGGCAA+AGG - chr1_2:8738776-8738795 Msa0054130:intron 50.0%
! TCCTTTGCCTCTCATCGGTT+TGG + chr1_2:8738780-8738799 None:intergenic 50.0%
CAAAGGATAGAAGATGCGGG+AGG - chr1_2:8738793-8738812 Msa0054130:intron 50.0%
!! ATGCGGGAGGCTTTGTTATG+TGG - chr1_2:8738806-8738825 Msa0054130:intron 50.0%
!! TGCGGGAGGCTTTGTTATGT+GGG - chr1_2:8738807-8738826 Msa0054130:intron 50.0%
!! CTTGCTGTTTCTCGCGCATT+TGG - chr1_2:8738942-8738961 Msa0054130:intron 50.0%
CACAATGGCTGCAGCATCTG+CGG - chr1_2:8735624-8735643 Msa0054130:intron 55.0%
!! GGCGTTGATGGCGAAGTTGT+TGG - chr1_2:8737081-8737100 Msa0054130:intron 55.0%
!! GGAGGTACTAAGCAAGGGAC+TGG - chr1_2:8737180-8737199 Msa0054130:CDS 55.0%
GCGATGACATTCCCCCTTGT+CGG - chr1_2:8737876-8737895 Msa0054130:intron 55.0%
CGGGAAACGGCAATGGCTAA+AGG + chr1_2:8738742-8738761 None:intergenic 55.0%
GTGATCTCGGGAAACGGCAA+TGG + chr1_2:8738749-8738768 None:intergenic 55.0%
!! TGCCTCTCATCGGTTTGGTC+TGG + chr1_2:8738775-8738794 None:intergenic 55.0%
!! GGAGGCTTTGTTATGTGGGC+TGG - chr1_2:8738811-8738830 Msa0054130:intron 55.0%
ACAGGAACTTGGAGAGTCGG+TGG - chr1_2:8738915-8738934 Msa0054130:intron 55.0%
!! TACTGGCTAGTGACGGACTG+TGG - chr1_2:8739175-8739194 Msa0054130:intron 55.0%
!! ACTGGCTAGTGACGGACTGT+GGG - chr1_2:8739176-8739195 Msa0054130:intron 55.0%
CTGAGCCCTCCACCACTAAC+AGG + chr1_2:8735422-8735441 None:intergenic 60.0%
! CTGTTAGTGGTGGAGGGCTC+AGG - chr1_2:8735420-8735439 Msa0054130:intron 60.0%
CGCAGATGCTGCAGCCATTG+TGG + chr1_2:8735626-8735645 None:intergenic 60.0%
!! ATGCTCCACGGTGGTGCCAT+AGG + chr1_2:8737818-8737837 None:intergenic 60.0%
! TGTGAAGGCATGCTCCACGG+TGG + chr1_2:8737827-8737846 None:intergenic 60.0%
!! TGTGACCATGGCGCCGACAA+GGG + chr1_2:8737892-8737911 None:intergenic 60.0%
!! TTGTGACCATGGCGCCGACA+AGG + chr1_2:8737893-8737912 None:intergenic 60.0%
CATCTGCGGTTGCGCTGTCG+AGG - chr1_2:8735638-8735657 Msa0054130:intron 65.0%
TGTGGCCTATGGCACCACCG+TGG - chr1_2:8737810-8737829 Msa0054130:intron 65.0%
ATTCCCCCTTGTCGGCGCCA+TGG - chr1_2:8737884-8737903 Msa0054130:intron 65.0%
!! TGACCATGGCGCCGACAAGG+GGG + chr1_2:8737890-8737909 None:intergenic 65.0%
!! GTGACCATGGCGCCGACAAG+GGG + chr1_2:8737891-8737910 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8734862 8740425 8734862 ID=Msa0054130;Name=Msa0054130
chr1_2 mRNA 8734862 8740425 8734862 ID=Msa0054130-mRNA-1;Parent=Msa0054130;Name=Msa0054130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=179|1|1|1|0.87|0.77|9|356|337
chr1_2 exon 8734862 8735379 8734862 ID=Msa0054130-mRNA-1:exon:3149;Parent=Msa0054130-mRNA-1
chr1_2 exon 8736072 8736146 8736072 ID=Msa0054130-mRNA-1:exon:3148;Parent=Msa0054130-mRNA-1
chr1_2 exon 8736277 8736368 8736277 ID=Msa0054130-mRNA-1:exon:3147;Parent=Msa0054130-mRNA-1
chr1_2 exon 8736455 8736541 8736455 ID=Msa0054130-mRNA-1:exon:3146;Parent=Msa0054130-mRNA-1
chr1_2 exon 8736904 8737062 8736904 ID=Msa0054130-mRNA-1:exon:3145;Parent=Msa0054130-mRNA-1
chr1_2 exon 8737171 8737269 8737171 ID=Msa0054130-mRNA-1:exon:3144;Parent=Msa0054130-mRNA-1
chr1_2 exon 8738164 8738291 8738164 ID=Msa0054130-mRNA-1:exon:3143;Parent=Msa0054130-mRNA-1
chr1_2 exon 8739846 8740105 8739846 ID=Msa0054130-mRNA-1:exon:3142;Parent=Msa0054130-mRNA-1
chr1_2 exon 8740295 8740425 8740295 ID=Msa0054130-mRNA-1:exon:3141;Parent=Msa0054130-mRNA-1
chr1_2 five_prime_UTR 8740295 8740425 8740295 ID=Msa0054130-mRNA-1:five_prime_utr;Parent=Msa0054130-mRNA-1
chr1_2 five_prime_UTR 8740058 8740105 8740058 ID=Msa0054130-mRNA-1:five_prime_utr;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8739846 8740057 8739846 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8738164 8738291 8738164 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8737171 8737269 8737171 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8736904 8737062 8736904 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8736455 8736541 8736455 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8736277 8736368 8736277 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8736072 8736146 8736072 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 CDS 8735218 8735379 8735218 ID=Msa0054130-mRNA-1:cds;Parent=Msa0054130-mRNA-1
chr1_2 three_prime_UTR 8734862 8735217 8734862 ID=Msa0054130-mRNA-1:three_prime_utr;Parent=Msa0054130-mRNA-1
Gene Sequence

>Msa0054130

ATGATAACTTGGAACCTTTTTCAAGCAAGAATAACCTCTACACACGCAATATTGTTATTGTTTCTTCTTCATTTTTTGGCTAAAGAAGCTGTTGTATCTGAGAATCTTGTTGAATATTCAACTTGTGATATGGGCTATCTCAATTCTGTTTTATCACCTTCAAGTCAGGTTCATGCTGCTGATGATACACCTGTTAGTGGTGGAGGGCTCAGCCAGAATGGAAAATTCAGCTATGGATATGCTAGCTCCCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGACGGCGTTGATGGCGAAGTTGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGTAATTTGATCAGCCACCCGAAATTCATTTCTGACACCAAATCTGCAATAGCTGATGCGTATACGCATACCGACTCTGAATTTCTGAAATCAGAGAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGTGACCGTTTGCTTGTTGCAAATGTTGGGGACTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCCGTTTCCCGAGATCACAAACCAGACCAAACCGATGAGAGGCAAAGGATAGAAGATGCGGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTCGGTGGTGTTCTTGCTGTTTCTCGCGCATTTGGTGATAGACTCCTTAAGCAATACGTTGTTGCTGATCCGGAAATTCAGGAAGAAAAGGTCGATAGTTCTCTTGAGTTTCTTATACTGGCTAGTGACGGACTGTGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCAGAAGAAGCAGCAAAGAGGCTGATGAAAGAAGCGTATCAGAGAGGTAGTTCTGACAACATTACTTGTGTCGTCGTTCGTTTCCTGATGAACAATCAAGGTTCTTCGTCTCGTAATAGCTCTGGCTAA
Protein sequence

>Msa0054130

MITWNLFQARITSTHAILLLFLLHFLAKEAVVSENLVEYSTCDMGYLNSVLSPSSQVHAADDTPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYTHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEEAAKRLMKEAYQRGSSDNITCVVVRFLMNNQGSSSRNSSG*