Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681210 | XP_003606265.1 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 1.23e-136 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681210 | sp|Q56XJ7|Y4276_ARATH | 38.462 | 91 | 54 | 1 | 68 | 158 | 119 | 207 | 9.40e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681210 | G7JL02 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 5.87e-137 | 390 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0681210 | 0.816319 | 5.878927e-52 | -8.615850e-47 |
| Msa0006050 | Msa0681210 | 0.811607 | 6.434132e-51 | -8.615850e-47 |
| Msa0012380 | Msa0681210 | 0.875744 | 2.420351e-68 | -8.615850e-47 |
| Msa0014410 | Msa0681210 | 0.820477 | 6.717931e-53 | -8.615850e-47 |
| Msa0020320 | Msa0681210 | 0.821659 | 3.589132e-53 | -8.615850e-47 |
| Msa0044180 | Msa0681210 | 0.817057 | 4.016512e-52 | -8.615850e-47 |
| Msa0046050 | Msa0681210 | 0.814049 | 1.877811e-51 | -8.615850e-47 |
| Msa0054760 | Msa0681210 | 0.807047 | 6.117690e-50 | -8.615850e-47 |
| Msa0064550 | Msa0681210 | 0.872221 | 3.757266e-67 | -8.615850e-47 |
| Msa0069930 | Msa0681210 | 0.811607 | 6.434784e-51 | -8.615850e-47 |
| Msa0072830 | Msa0681210 | 0.840481 | 8.471762e-58 | -8.615850e-47 |
| Msa0072860 | Msa0681210 | 0.836802 | 7.558529e-57 | -8.615850e-47 |
| Msa0089510 | Msa0681210 | 0.827475 | 1.532637e-54 | -8.615850e-47 |
| Msa0089520 | Msa0681210 | 0.825497 | 4.538734e-54 | -8.615850e-47 |
| Msa0108070 | Msa0681210 | 0.817236 | 3.660947e-52 | -8.615850e-47 |
| Msa0109490 | Msa0681210 | 0.840737 | 7.261885e-58 | -8.615850e-47 |
| Msa0114700 | Msa0681210 | 0.806371 | 8.497806e-50 | -8.615850e-47 |
| Msa0604880 | Msa0681210 | 0.887480 | 1.374788e-72 | -8.615850e-47 |
| Msa0605250 | Msa0681210 | 0.849013 | 4.244955e-60 | -8.615850e-47 |
| Msa0608780 | Msa0681210 | 0.818364 | 2.037032e-52 | -8.615850e-47 |
| Msa0609790 | Msa0681210 | 0.847839 | 8.968584e-60 | -8.615850e-47 |
| Msa0610780 | Msa0681210 | 0.820454 | 6.801451e-53 | -8.615850e-47 |
| Msa0610810 | Msa0681210 | 0.806161 | 9.409090e-50 | -8.615850e-47 |
| Msa0618520 | Msa0681210 | 0.845345 | 4.303705e-59 | -8.615850e-47 |
| Msa0621780 | Msa0681210 | 0.809687 | 1.672694e-50 | -8.615850e-47 |
| Msa0622250 | Msa0681210 | 0.850066 | 2.159148e-60 | -8.615850e-47 |
| Msa0624040 | Msa0681210 | 0.846087 | 2.706146e-59 | -8.615850e-47 |
| Msa0627050 | Msa0681210 | 0.874097 | 8.811809e-68 | -8.615850e-47 |
| Msa0636720 | Msa0681210 | 0.849193 | 3.782874e-60 | -8.615850e-47 |
| Msa0644630 | Msa0681210 | 0.854356 | 1.300014e-61 | -8.615850e-47 |
| Msa0646190 | Msa0681210 | 0.907650 | 4.030181e-81 | -8.615850e-47 |
| Msa0646340 | Msa0681210 | 0.843712 | 1.183807e-58 | -8.615850e-47 |
| Msa0649250 | Msa0681210 | 0.814141 | 1.792091e-51 | -8.615850e-47 |
| Msa0649310 | Msa0681210 | 0.806663 | 7.375473e-50 | -8.615850e-47 |
| Msa0651310 | Msa0681210 | 0.841092 | 5.859319e-58 | -8.615850e-47 |
| Msa0659520 | Msa0681210 | 0.823130 | 1.634823e-53 | -8.615850e-47 |
| Msa0675010 | Msa0681210 | 0.847459 | 1.140807e-59 | -8.615850e-47 |
| Msa0676100 | Msa0681210 | 0.824277 | 8.804706e-54 | -8.615850e-47 |
| Msa0679780 | Msa0681210 | 0.818207 | 2.211542e-52 | -8.615850e-47 |
| Msa0681210 | Msa0685890 | 0.830549 | 2.758299e-55 | -8.615850e-47 |
| Msa0681210 | Msa0693400 | 0.861296 | 1.133793e-63 | -8.615850e-47 |
| Msa0681210 | Msa0693500 | 0.840536 | 8.195027e-58 | -8.615850e-47 |
| Msa0681210 | Msa0702620 | 0.802271 | 6.073514e-49 | -8.615850e-47 |
| Msa0681210 | Msa0705810 | 0.847155 | 1.383106e-59 | -8.615850e-47 |
| Msa0681210 | Msa0742090 | 0.866812 | 2.168676e-65 | -8.615850e-47 |
| Msa0681210 | Msa0748330 | 0.844964 | 5.453451e-59 | -8.615850e-47 |
| Msa0681210 | Msa0775580 | 0.803884 | 2.816353e-49 | -8.615850e-47 |
| Msa0681210 | Msa0786100 | 0.868201 | 7.786513e-66 | -8.615850e-47 |
| Msa0681210 | Msa0790640 | 0.860557 | 1.901514e-63 | -8.615850e-47 |
| Msa0681210 | Msa0793100 | 0.845224 | 4.639340e-59 | -8.615850e-47 |
| Msa0681210 | Msa0795710 | 0.810074 | 1.380986e-50 | -8.615850e-47 |
| Msa0681210 | Msa0806720 | 0.843011 | 1.821349e-58 | -8.615850e-47 |
| Msa0681210 | Msa0806760 | 0.836846 | 7.367176e-57 | -8.615850e-47 |
| Msa0681210 | Msa0812970 | 0.821983 | 3.020260e-53 | -8.615850e-47 |
| Msa0681210 | Msa0813030 | 0.822377 | 2.447872e-53 | -8.615850e-47 |
| Msa0681210 | Msa0819320 | 0.803293 | 3.735708e-49 | -8.615850e-47 |
| Msa0681210 | Msa0819370 | 0.804012 | 2.649630e-49 | -8.615850e-47 |
| Msa0681210 | Msa0823310 | 0.848857 | 4.691530e-60 | -8.615850e-47 |
| Msa0681210 | Msa0853480 | 0.818745 | 1.669721e-52 | -8.615850e-47 |
| Msa0681210 | Msa0853500 | 0.823758 | 1.165933e-53 | -8.615850e-47 |
| Msa0681210 | Msa0879650 | 0.835389 | 1.726112e-56 | -8.615850e-47 |
| Msa0681210 | Msa0887100 | 0.818120 | 2.313452e-52 | -8.615850e-47 |
| Msa0681210 | Msa0904630 | 0.800220 | 1.596401e-48 | -8.615850e-47 |
| Msa0681210 | Msa0929940 | 0.802840 | 4.634343e-49 | -8.615850e-47 |
| Msa0681210 | Msa0944690 | 0.837779 | 4.250037e-57 | -8.615850e-47 |
| Msa0681210 | Msa0945960 | 0.828348 | 9.448670e-55 | -8.615850e-47 |
| Msa0681210 | Msa0968780 | 0.835715 | 1.427729e-56 | -8.615850e-47 |
| Msa0681210 | Msa0973890 | 0.810818 | 9.539272e-51 | -8.615850e-47 |
| Msa0681210 | Msa0984000 | 0.888612 | 5.058711e-73 | -8.615850e-47 |
| Msa0681210 | Msa1034930 | 0.818545 | 1.854038e-52 | -8.615850e-47 |
| Msa0681210 | Msa1036020 | -0.806346 | 8.599930e-50 | -8.615850e-47 |
| Msa0681210 | Msa1036250 | 0.840646 | 7.671188e-58 | -8.615850e-47 |
| Msa0681210 | Msa1053690 | 0.812141 | 4.923218e-51 | -8.615850e-47 |
| Msa0681210 | Msa1055360 | 0.808973 | 2.379682e-50 | -8.615850e-47 |
| Msa0681210 | Msa1061670 | -0.800732 | 1.255203e-48 | -8.615850e-47 |
| Msa0681210 | Msa1069960 | 0.801919 | 7.172799e-49 | -8.615850e-47 |
| Msa0681210 | Msa1076280 | -0.818534 | 1.864431e-52 | -8.615850e-47 |
| Msa0681210 | Msa1076520 | 0.856886 | 2.375764e-62 | -8.615850e-47 |
| Msa0681210 | Msa1076830 | -0.802653 | 5.065987e-49 | -8.615850e-47 |
| Msa0681210 | Msa1082150 | 0.843569 | 1.292817e-58 | -8.615850e-47 |
| Msa0681210 | Msa1093390 | 0.803130 | 4.037473e-49 | -8.615850e-47 |
| Msa0681210 | Msa1096510 | 0.801887 | 7.283708e-49 | -8.615850e-47 |
| Msa0681210 | Msa1096570 | 0.803751 | 3.001520e-49 | -8.615850e-47 |
| Msa0681210 | Msa1106960 | -0.803866 | 2.841529e-49 | -8.615850e-47 |
| Msa0681210 | Msa1118460 | 0.803064 | 4.166566e-49 | -8.615850e-47 |
| Msa0681210 | Msa1119860 | 0.805287 | 1.436105e-49 | -8.615850e-47 |
| Msa0681210 | Msa1122720 | 0.866308 | 3.135237e-65 | -8.615850e-47 |
| Msa0681210 | Msa1133440 | 0.818343 | 2.059908e-52 | -8.615850e-47 |
| Msa0681210 | Msa1144730 | 0.888042 | 8.381661e-73 | -8.615850e-47 |
| Msa0681210 | Msa1144950 | 0.812978 | 3.229838e-51 | -8.615850e-47 |
| Msa0681210 | Msa1162330 | 0.808334 | 3.259922e-50 | -8.615850e-47 |
| Msa0681210 | Msa1173380 | 0.861639 | 8.908646e-64 | -8.615850e-47 |
| Msa0681210 | Msa1182800 | 0.849016 | 4.238651e-60 | -8.615850e-47 |
| Msa0681210 | Msa1182830 | 0.827133 | 1.851480e-54 | -8.615850e-47 |
| Msa0681210 | Msa1184010 | 0.841008 | 6.165214e-58 | -8.615850e-47 |
| Msa0681210 | Msa1219060 | 0.824172 | 9.320175e-54 | -8.615850e-47 |
| Msa0681210 | Msa1228350 | 0.841673 | 4.120305e-58 | -8.615850e-47 |
| Msa0681210 | Msa1228460 | 0.826439 | 2.710805e-54 | -8.615850e-47 |
| Msa0681210 | Msa1236860 | 0.822644 | 2.121341e-53 | -8.615850e-47 |
| Msa0681210 | Msa1243730 | 0.810961 | 8.884667e-51 | -8.615850e-47 |
| Msa0681210 | Msa1255020 | 0.856708 | 2.679722e-62 | -8.615850e-47 |
| Msa0681210 | Msa1272950 | 0.817985 | 2.482084e-52 | -8.615850e-47 |
| Msa0681210 | Msa1293050 | 0.816444 | 5.513495e-52 | -8.615850e-47 |
| Msa0681210 | Msa1295470 | 0.852914 | 3.375882e-61 | -8.615850e-47 |
| Msa0681210 | Msa1306190 | 0.830287 | 3.198018e-55 | -8.615850e-47 |
| Msa0681210 | Msa1306200 | 0.844531 | 7.135402e-59 | -8.615850e-47 |
| Msa0681210 | Msa1317240 | 0.836661 | 8.209524e-57 | -8.615850e-47 |
| Msa0681210 | Msa1338590 | 0.865776 | 4.621087e-65 | -8.615850e-47 |
| Msa0681210 | Msa1349810 | 0.870001 | 2.028998e-66 | -8.615850e-47 |
| Msa0681210 | Msa1354090 | 0.837537 | 4.903950e-57 | -8.615850e-47 |
| Msa0681210 | Msa1358340 | 0.857369 | 1.710676e-62 | -8.615850e-47 |
| Msa0681210 | Msa1359620 | 0.807888 | 4.055348e-50 | -8.615850e-47 |
| Msa0681210 | Msa1359890 | 0.901591 | 2.294920e-78 | -8.615850e-47 |
| Msa0681210 | Msa1361190 | 0.839404 | 1.617043e-57 | -8.615850e-47 |
| Msa0681210 | Msa1361200 | 0.805523 | 1.281468e-49 | -8.615850e-47 |
| Msa0681210 | Msa1363130 | -0.803116 | 4.064751e-49 | -8.615850e-47 |
| Msa0681210 | Msa1369180 | 0.848583 | 5.587919e-60 | -8.615850e-47 |
| Msa0681210 | Msa1373390 | 0.830607 | 2.669275e-55 | -8.615850e-47 |
| Msa0681210 | Msa1375780 | 0.804029 | 2.628432e-49 | -8.615850e-47 |
| Msa0681210 | Msa1376070 | -0.811830 | 5.752366e-51 | -8.615850e-47 |
| Msa0681210 | Msa1394900 | 0.835837 | 1.329509e-56 | -8.615850e-47 |
| Msa0681210 | Msa1403700 | 0.805062 | 1.600362e-49 | -8.615850e-47 |
| Msa0681210 | Msa1405380 | 0.831094 | 2.028309e-55 | -8.615850e-47 |
| Msa0681210 | Msa1406020 | 0.855465 | 6.196254e-62 | -8.615850e-47 |
| Msa0681210 | Msa1407210 | -0.802154 | 6.417312e-49 | -8.615850e-47 |
| Msa0681210 | Msa1413900 | 0.800252 | 1.572649e-48 | -8.615850e-47 |
| Msa0681210 | Msa1434660 | 0.841634 | 4.218663e-58 | -8.615850e-47 |
| Msa0681210 | Msa1443550 | 0.824330 | 8.556660e-54 | -8.615850e-47 |
| Msa0681210 | Msa1450630 | 0.809647 | 1.706769e-50 | -8.615850e-47 |
| Msa0681210 | Msa1456620 | 0.821031 | 5.011905e-53 | -8.615850e-47 |
| Msa0681210 | Msa1459540 | 0.841975 | 3.428322e-58 | -8.615850e-47 |
| Msa0681210 | Msa1466350 | 0.801810 | 7.554826e-49 | -8.615850e-47 |
| Msa0137010 | Msa0681210 | 0.802969 | 4.358217e-49 | -8.615850e-47 |
| Msa0140290 | Msa0681210 | 0.802447 | 5.587100e-49 | -8.615850e-47 |
| Msa0154220 | Msa0681210 | 0.856311 | 3.506431e-62 | -8.615850e-47 |
| Msa0154240 | Msa0681210 | 0.878995 | 1.787651e-69 | -8.615850e-47 |
| Msa0154270 | Msa0681210 | 0.867003 | 1.884664e-65 | -8.615850e-47 |
| Msa0155610 | Msa0681210 | 0.811093 | 8.317634e-51 | -8.615850e-47 |
| Msa0163960 | Msa0681210 | 0.801111 | 1.050580e-48 | -8.615850e-47 |
| Msa0187980 | Msa0681210 | 0.840960 | 6.345311e-58 | -8.615850e-47 |
| Msa0197030 | Msa0681210 | 0.833203 | 6.103616e-56 | -8.615850e-47 |
| Msa0199740 | Msa0681210 | 0.819753 | 9.839684e-53 | -8.615850e-47 |
| Msa0212730 | Msa0681210 | 0.808669 | 2.764475e-50 | -8.615850e-47 |
| Msa0216210 | Msa0681210 | 0.836037 | 1.183301e-56 | -8.615850e-47 |
| Msa0216220 | Msa0681210 | 0.846969 | 1.554794e-59 | -8.615850e-47 |
| Msa0224370 | Msa0681210 | 0.806399 | 8.381913e-50 | -8.615850e-47 |
| Msa0224400 | Msa0681210 | 0.825159 | 5.458224e-54 | -8.615850e-47 |
| Msa0369100 | Msa0681210 | 0.803502 | 3.381610e-49 | -8.615850e-47 |
| Msa0382590 | Msa0681210 | 0.828264 | 9.904278e-55 | -8.615850e-47 |
| Msa0387970 | Msa0681210 | 0.856596 | 2.891212e-62 | -8.615850e-47 |
| Msa0392050 | Msa0681210 | 0.888065 | 8.212280e-73 | -8.615850e-47 |
| Msa0392540 | Msa0681210 | 0.822550 | 2.231384e-53 | -8.615850e-47 |
| Msa0401340 | Msa0681210 | 0.848306 | 6.667033e-60 | -8.615850e-47 |
| Msa0404060 | Msa0681210 | 0.816822 | 4.534809e-52 | -8.615850e-47 |
| Msa0404070 | Msa0681210 | 0.813891 | 2.034097e-51 | -8.615850e-47 |
| Msa0416540 | Msa0681210 | 0.826364 | 2.824830e-54 | -8.615850e-47 |
| Msa0428330 | Msa0681210 | 0.800613 | 1.327777e-48 | -8.615850e-47 |
| Msa0432720 | Msa0681210 | 0.841234 | 5.377284e-58 | -8.615850e-47 |
| Msa0437790 | Msa0681210 | 0.821816 | 3.302007e-53 | -8.615850e-47 |
| Msa0440310 | Msa0681210 | 0.814791 | 1.286890e-51 | -8.615850e-47 |
| Msa0448120 | Msa0681210 | 0.829965 | 3.830885e-55 | -8.615850e-47 |
| Msa0469950 | Msa0681210 | 0.887303 | 1.606088e-72 | -8.615850e-47 |
| Msa0238860 | Msa0681210 | 0.846141 | 2.617157e-59 | -8.615850e-47 |
| Msa0242290 | Msa0681210 | 0.804806 | 1.809777e-49 | -8.615850e-47 |
| Msa0253160 | Msa0681210 | 0.844341 | 8.027842e-59 | -8.615850e-47 |
| Msa0260190 | Msa0681210 | 0.872147 | 3.974685e-67 | -8.615850e-47 |
| Msa0276590 | Msa0681210 | 0.822273 | 2.587578e-53 | -8.615850e-47 |
| Msa0291940 | Msa0681210 | 0.839383 | 1.637313e-57 | -8.615850e-47 |
| Msa0295570 | Msa0681210 | 0.868855 | 4.786554e-66 | -8.615850e-47 |
| Msa0303440 | Msa0681210 | 0.813015 | 3.170235e-51 | -8.615850e-47 |
| Msa0303500 | Msa0681210 | 0.824288 | 8.753795e-54 | -8.615850e-47 |
| Msa0316610 | Msa0681210 | 0.832932 | 7.127444e-56 | -8.615850e-47 |
| Msa0329910 | Msa0681210 | 0.808076 | 3.699522e-50 | -8.615850e-47 |
| Msa0343370 | Msa0681210 | 0.804533 | 2.064164e-49 | -8.615850e-47 |
| Msa0344680 | Msa0681210 | 0.886763 | 2.576710e-72 | -8.615850e-47 |
| Msa0346790 | Msa0681210 | 0.804525 | 2.071420e-49 | -8.615850e-47 |
| Msa0354390 | Msa0681210 | 0.821760 | 3.401700e-53 | -8.615850e-47 |
| Msa0525270 | Msa0681210 | 0.871938 | 4.664207e-67 | -8.615850e-47 |
| Msa0525280 | Msa0681210 | 0.871019 | 9.401287e-67 | -8.615850e-47 |
| Msa0530340 | Msa0681210 | 0.857898 | 1.192156e-62 | -8.615850e-47 |
| Msa0545230 | Msa0681210 | 0.838187 | 3.337956e-57 | -8.615850e-47 |
| Msa0546080 | Msa0681210 | 0.950404 | 1.766340e-108 | -8.615850e-47 |
| Msa0548210 | Msa0681210 | 0.854119 | 1.521870e-61 | -8.615850e-47 |
| Msa0549540 | Msa0681210 | 0.892595 | 1.373087e-74 | -8.615850e-47 |
| Msa0549760 | Msa0681210 | 0.832626 | 8.490996e-56 | -8.615850e-47 |
| Msa0556070 | Msa0681210 | 0.862178 | 6.090793e-64 | -8.615850e-47 |
| Msa0568600 | Msa0681210 | 0.815905 | 7.276786e-52 | -8.615850e-47 |
| Msa0568610 | Msa0681210 | 0.836798 | 7.574477e-57 | -8.615850e-47 |
| Msa0569930 | Msa0681210 | 0.801014 | 1.099248e-48 | -8.615850e-47 |
| Msa0570680 | Msa0681210 | 0.818382 | 2.018020e-52 | -8.615850e-47 |
| Msa0577050 | Msa0681210 | 0.800040 | 1.737009e-48 | -8.615850e-47 |
| Msa0580540 | Msa0681210 | 0.811991 | 5.306493e-51 | -8.615850e-47 |
| Msa0584280 | Msa0681210 | 0.911332 | 6.856116e-83 | -8.615850e-47 |
| Msa0587250 | Msa0681210 | 0.819049 | 1.423874e-52 | -8.615850e-47 |
| Msa0600820 | Msa0681210 | 0.822837 | 1.913320e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681210 | MtrunA17_Chr4g0027171 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 1.13e-140 | 390 |
| Msa0681210 | MtrunA17_Chr2g0320881 | 54.857 | 175 | 67 | 5 | 15 | 182 | 8 | 177 | 2.21e-56 | 177 |
| Msa0681210 | MtrunA17_Chr4g0056791 | 43.077 | 130 | 58 | 2 | 69 | 196 | 57 | 172 | 2.36e-28 | 104 |
| Msa0681210 | MtrunA17_Chr5g0398651 | 51.724 | 87 | 42 | 0 | 69 | 155 | 26 | 112 | 6.40e-25 | 94.0 |
| Msa0681210 | MtrunA17_Chr5g0398661 | 40.741 | 81 | 48 | 0 | 72 | 152 | 117 | 197 | 8.05e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681210 | AT2G27830.1 | 48.241 | 199 | 89 | 5 | 1 | 194 | 1 | 190 | 5.11e-51 | 163 |
| Msa0681210 | AT4G22758.1 | 38.462 | 91 | 54 | 1 | 68 | 158 | 119 | 207 | 9.56e-13 | 65.5 |
| Msa0681210 | AT1G70780.1 | 30.328 | 122 | 79 | 3 | 71 | 188 | 16 | 135 | 8.88e-12 | 60.5 |
Find 65 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTTCTTCAAGCTTCTT+TGG | 0.205520 | 4_4:-41338903 | None:intergenic |
| ATAAATAAACAATAAATTAT+TGG | 0.205872 | 4_4:-41339101 | None:intergenic |
| AATGAGAAGCTTAAGGAAAT+TGG | 0.265022 | 4_4:+41338858 | Msa0681210:CDS |
| GCCGACGAAGTTACTCATTA+AGG | 0.295975 | 4_4:+41338393 | Msa0681210:CDS |
| GAGTAACTTCGTCGGCTGTC+TGG | 0.327050 | 4_4:-41338386 | None:intergenic |
| CACACTTCTGCAACACTGTC+CGG | 0.327283 | 4_4:+41338274 | Msa0681210:CDS |
| GCTTCCTTCGACGGCAAGAT+TGG | 0.327598 | 4_4:-41338526 | None:intergenic |
| TTGCCGCACGCTTCCTGTCC+TGG | 0.374159 | 4_4:-41338336 | None:intergenic |
| TAAACGACGCCGTTACGTTA+TGG | 0.389603 | 4_4:-41338938 | None:intergenic |
| AGATAGAAATGAGAAGCTTA+AGG | 0.392238 | 4_4:+41338851 | Msa0681210:CDS |
| ATTTCTTGATATGAAATGAT+TGG | 0.413368 | 4_4:+41339021 | Msa0681210:exon |
| ACAAGGTCCGGCATAGTCTT+TGG | 0.414724 | 4_4:-41338313 | None:intergenic |
| GAAATACTAGTAACTGTTGT+TGG | 0.429120 | 4_4:-41339079 | None:intergenic |
| ACACTTCTGCAACACTGTCC+GGG | 0.435674 | 4_4:+41338275 | Msa0681210:CDS |
| ATTTGATAGCGGAGGCTGTA+AGG | 0.439277 | 4_4:+41338479 | Msa0681210:CDS |
| GGGTTGGAGAAGATGAGGTT+TGG | 0.453885 | 4_4:-41338117 | None:intergenic |
| ACTCATTAAGGTTACGATGA+TGG | 0.455220 | 4_4:+41338405 | Msa0681210:CDS |
| CTCATTAAGGTTACGATGAT+GGG | 0.455912 | 4_4:+41338406 | Msa0681210:CDS |
| GAGCTTCCACATGGCTGTTA+CGG | 0.456308 | 4_4:-41338207 | None:intergenic |
| TTTCTTGATATGAAATGATT+GGG | 0.473375 | 4_4:+41339022 | Msa0681210:exon |
| AGTAACTTCGTCGGCTGTCT+GGG | 0.474432 | 4_4:-41338385 | None:intergenic |
| ATAACCAGACAAAGCGAGAA+TGG | 0.480282 | 4_4:-41338064 | None:intergenic |
| CACTGTCCGGGGCAAAACTC+CGG | 0.481170 | 4_4:+41338287 | Msa0681210:CDS |
| CACGCTTCCTGTCCTGGACA+AGG | 0.482528 | 4_4:-41338330 | None:intergenic |
| TTCCTGTCCTGGACAAGGTC+CGG | 0.485224 | 4_4:-41338325 | None:intergenic |
| ATCTATAGTGAGGAAAATCA+AGG | 0.497119 | 4_4:-41338138 | None:intergenic |
| GGCAATGACTTCTTTGCCAC+CGG | 0.507673 | 4_4:+41338354 | Msa0681210:CDS |
| GTTACGATGATGGGCAGCCT+TGG | 0.521614 | 4_4:+41338415 | Msa0681210:CDS |
| TGCCGGACCTTGTCCAGGAC+AGG | 0.523940 | 4_4:+41338323 | Msa0681210:CDS |
| GACTATGCCGGACCTTGTCC+AGG | 0.528186 | 4_4:+41338318 | Msa0681210:CDS |
| CTTCCACATGGCTGTTACGG+TGG | 0.529872 | 4_4:-41338204 | None:intergenic |
| TCTCTGTTAATCTTCCTCTC+CGG | 0.534835 | 4_4:-41338231 | None:intergenic |
| ATGACGATGGAGTCGACGGT+TGG | 0.536486 | 4_4:+41338454 | Msa0681210:CDS |
| ATCAAGGGTTGGAGAAGATG+AGG | 0.542417 | 4_4:-41338122 | None:intergenic |
| CCGGCATAGTCTTTGGCCGC+CGG | 0.545096 | 4_4:-41338306 | None:intergenic |
| CTCTCCGGTGAGCTTCCACA+TGG | 0.546121 | 4_4:-41338216 | None:intergenic |
| AAGCAAGAAGCTTCCTTCGA+CGG | 0.546345 | 4_4:-41338535 | None:intergenic |
| GTAAGGTTGTATGTTAAAGA+AGG | 0.550051 | 4_4:+41338496 | Msa0681210:CDS |
| CCGTCCAATCTTGCCGTCGA+AGG | 0.553306 | 4_4:+41338522 | Msa0681210:CDS |
| CATCGTCATTAACACTTGCA+CGG | 0.554830 | 4_4:-41338440 | None:intergenic |
| ATCGTCATTAACACTTGCAC+GGG | 0.561873 | 4_4:-41338439 | None:intergenic |
| AGCTTAAGGAAATTGGATCA+AGG | 0.569028 | 4_4:+41338865 | Msa0681210:CDS |
| CCTTCGACGGCAAGATTGGA+CGG | 0.570300 | 4_4:-41338522 | None:intergenic |
| CGTTTGACATGGTGGTAAAG+TGG | 0.577598 | 4_4:-41338174 | None:intergenic |
| CACTTCTGCAACACTGTCCG+GGG | 0.582028 | 4_4:+41338276 | Msa0681210:CDS |
| AGTAACTGTTGTTGGCAGCA+TGG | 0.587933 | 4_4:-41339071 | None:intergenic |
| ACAGCCATGTGGAAGCTCAC+CGG | 0.596097 | 4_4:+41338212 | Msa0681210:CDS |
| GTTAATGACGATGGAGTCGA+CGG | 0.597176 | 4_4:+41338450 | Msa0681210:CDS |
| TAGTGAGGAAAATCAAGGGT+TGG | 0.598377 | 4_4:-41338133 | None:intergenic |
| CCGGCGGCCAAAGACTATGC+CGG | 0.600487 | 4_4:+41338306 | Msa0681210:CDS |
| TTAACACTTGCACGGGACCA+AGG | 0.603739 | 4_4:-41338432 | None:intergenic |
| CGTGCAAGTGTTAATGACGA+TGG | 0.614536 | 4_4:+41338441 | Msa0681210:CDS |
| AAGCTTGAAGAAAGTGACAA+TGG | 0.627431 | 4_4:+41338909 | Msa0681210:CDS |
| ACCTTAATGAGTAACTTCGT+CGG | 0.631958 | 4_4:-41338394 | None:intergenic |
| TCTATAGTGAGGAAAATCAA+GGG | 0.637563 | 4_4:-41338137 | None:intergenic |
| TATCTGAAATATCTATAGTG+AGG | 0.647624 | 4_4:-41338148 | None:intergenic |
| GGTTGGAGATTTGATAGCGG+AGG | 0.649039 | 4_4:+41338471 | Msa0681210:CDS |
| TGTCCAGGACAGGAAGCGTG+CGG | 0.659036 | 4_4:+41338333 | Msa0681210:CDS |
| CTTGAAGAAAGTGACAATGG+TGG | 0.660090 | 4_4:+41338912 | Msa0681210:CDS |
| TTGTTGGCAGCATGGACAAG+TGG | 0.673750 | 4_4:-41339063 | None:intergenic |
| TGGTGGAGACCATAACGTAA+CGG | 0.684404 | 4_4:+41338929 | Msa0681210:CDS |
| CATGTGGAAGCTCACCGGAG+AGG | 0.694898 | 4_4:+41338217 | Msa0681210:CDS |
| TGTCCGGGGCAAAACTCCGG+CGG | 0.695006 | 4_4:+41338290 | Msa0681210:CDS |
| AAACCACCGTAACAGCCATG+TGG | 0.701820 | 4_4:+41338201 | Msa0681210:CDS |
| GACGGTTGGAGATTTGATAG+CGG | 0.725699 | 4_4:+41338468 | Msa0681210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAGGTCTTTATTTTTTT+TGG | + | chr4_4:41338725-41338744 | Msa0681210:intron | 15.0% |
| !!! | ATGTAGTTATTATTTTTTGT+TGG | + | chr4_4:41338795-41338814 | Msa0681210:intron | 15.0% |
| !! | ATATTATACATAGTGATTAA+TGG | + | chr4_4:41339225-41339244 | Msa0681210:three_prime_UTR | 15.0% |
| !!! | TATTAGGTCTTTATTTTTTT+TGG | + | chr4_4:41338725-41338744 | Msa0681210:intron | 15.0% |
| !!! | ATGTAGTTATTATTTTTTGT+TGG | + | chr4_4:41338795-41338814 | Msa0681210:intron | 15.0% |
| !! | TGAACTATGAAAACTAAAAT+TGG | - | chr4_4:41338606-41338625 | None:intergenic | 20.0% |
| !!! | TAGTTATTATTTTTTGTTGG+AGG | + | chr4_4:41338798-41338817 | Msa0681210:intron | 20.0% |
| !!! | AGTTATTATTTTTTGTTGGA+GGG | + | chr4_4:41338799-41338818 | Msa0681210:intron | 20.0% |
| !! | ATTTCTTGATATGAAATGAT+TGG | + | chr4_4:41339021-41339040 | Msa0681210:exon | 20.0% |
| !! | TTTCTTGATATGAAATGATT+GGG | + | chr4_4:41339022-41339041 | Msa0681210:exon | 20.0% |
| !! | TGAACTATGAAAACTAAAAT+TGG | - | chr4_4:41338606-41338625 | None:intergenic | 20.0% |
| !!! | TAGTTATTATTTTTTGTTGG+AGG | + | chr4_4:41338798-41338817 | Msa0681210:intron | 20.0% |
| !!! | AGTTATTATTTTTTGTTGGA+GGG | + | chr4_4:41338799-41338818 | Msa0681210:intron | 20.0% |
| !! | ATTTCTTGATATGAAATGAT+TGG | + | chr4_4:41339021-41339040 | Msa0681210:exon | 20.0% |
| !! | TTTCTTGATATGAAATGATT+GGG | + | chr4_4:41339022-41339041 | Msa0681210:exon | 20.0% |
| !! | TATCTGAAATATCTATAGTG+AGG | - | chr4_4:41338151-41338170 | None:intergenic | 25.0% |
| ! | ACTAGAACAACGTAAATATT+AGG | + | chr4_4:41338709-41338728 | Msa0681210:intron | 25.0% |
| !! | TATCTGAAATATCTATAGTG+AGG | - | chr4_4:41338151-41338170 | None:intergenic | 25.0% |
| ! | ACTAGAACAACGTAAATATT+AGG | + | chr4_4:41338709-41338728 | Msa0681210:intron | 25.0% |
| TCTATAGTGAGGAAAATCAA+GGG | - | chr4_4:41338140-41338159 | None:intergenic | 30.0% | |
| ATCTATAGTGAGGAAAATCA+AGG | - | chr4_4:41338141-41338160 | None:intergenic | 30.0% | |
| ! | GAGAAATCATCATCTTTTCA+TGG | + | chr4_4:41338250-41338269 | Msa0681210:CDS | 30.0% |
| GTAAGGTTGTATGTTAAAGA+AGG | + | chr4_4:41338496-41338515 | Msa0681210:CDS | 30.0% | |
| TATGACGTATCTAATTTCTC+TGG | + | chr4_4:41338670-41338689 | Msa0681210:intron | 30.0% | |
| !!! | TTGATTTGTTTTATGAGTGC+AGG | + | chr4_4:41338825-41338844 | Msa0681210:intron | 30.0% |
| AGATAGAAATGAGAAGCTTA+AGG | + | chr4_4:41338851-41338870 | Msa0681210:CDS | 30.0% | |
| AATGAGAAGCTTAAGGAAAT+TGG | + | chr4_4:41338858-41338877 | Msa0681210:CDS | 30.0% | |
| GAAATACTAGTAACTGTTGT+TGG | - | chr4_4:41339082-41339101 | None:intergenic | 30.0% | |
| TCTATAGTGAGGAAAATCAA+GGG | - | chr4_4:41338140-41338159 | None:intergenic | 30.0% | |
| ATCTATAGTGAGGAAAATCA+AGG | - | chr4_4:41338141-41338160 | None:intergenic | 30.0% | |
| ! | GAGAAATCATCATCTTTTCA+TGG | + | chr4_4:41338250-41338269 | Msa0681210:CDS | 30.0% |
| GTAAGGTTGTATGTTAAAGA+AGG | + | chr4_4:41338496-41338515 | Msa0681210:CDS | 30.0% | |
| TATGACGTATCTAATTTCTC+TGG | + | chr4_4:41338670-41338689 | Msa0681210:intron | 30.0% | |
| !!! | TTGATTTGTTTTATGAGTGC+AGG | + | chr4_4:41338825-41338844 | Msa0681210:intron | 30.0% |
| AGATAGAAATGAGAAGCTTA+AGG | + | chr4_4:41338851-41338870 | Msa0681210:CDS | 30.0% | |
| AATGAGAAGCTTAAGGAAAT+TGG | + | chr4_4:41338858-41338877 | Msa0681210:CDS | 30.0% | |
| GAAATACTAGTAACTGTTGT+TGG | - | chr4_4:41339082-41339101 | None:intergenic | 30.0% | |
| !!! | AGGTTTGGTTTTGTGGTTTA+TGG | - | chr4_4:41338105-41338124 | None:intergenic | 35.0% |
| ACCTTAATGAGTAACTTCGT+CGG | - | chr4_4:41338397-41338416 | None:intergenic | 35.0% | |
| ACTCATTAAGGTTACGATGA+TGG | + | chr4_4:41338405-41338424 | Msa0681210:CDS | 35.0% | |
| CTCATTAAGGTTACGATGAT+GGG | + | chr4_4:41338406-41338425 | Msa0681210:CDS | 35.0% | |
| AGCTTAAGGAAATTGGATCA+AGG | + | chr4_4:41338865-41338884 | Msa0681210:CDS | 35.0% | |
| TCACTTTCTTCAAGCTTCTT+TGG | - | chr4_4:41338906-41338925 | None:intergenic | 35.0% | |
| AAGCTTGAAGAAAGTGACAA+TGG | + | chr4_4:41338909-41338928 | Msa0681210:CDS | 35.0% | |
| ! | CAAGTTGAAAAAGTGAGCAA+AGG | + | chr4_4:41338975-41338994 | Msa0681210:CDS | 35.0% |
| ! | GAAAAAGTGAGCAAAGGTTT+TGG | + | chr4_4:41338981-41339000 | Msa0681210:CDS | 35.0% |
| !! | GCAAAGGTTTTGGTCTTTTA+AGG | + | chr4_4:41338991-41339010 | Msa0681210:CDS | 35.0% |
| !!! | AGGTTTGGTTTTGTGGTTTA+TGG | - | chr4_4:41338105-41338124 | None:intergenic | 35.0% |
| ACCTTAATGAGTAACTTCGT+CGG | - | chr4_4:41338397-41338416 | None:intergenic | 35.0% | |
| ACTCATTAAGGTTACGATGA+TGG | + | chr4_4:41338405-41338424 | Msa0681210:CDS | 35.0% | |
| CTCATTAAGGTTACGATGAT+GGG | + | chr4_4:41338406-41338425 | Msa0681210:CDS | 35.0% | |
| AGCTTAAGGAAATTGGATCA+AGG | + | chr4_4:41338865-41338884 | Msa0681210:CDS | 35.0% | |
| TCACTTTCTTCAAGCTTCTT+TGG | - | chr4_4:41338906-41338925 | None:intergenic | 35.0% | |
| AAGCTTGAAGAAAGTGACAA+TGG | + | chr4_4:41338909-41338928 | Msa0681210:CDS | 35.0% | |
| ! | CAAGTTGAAAAAGTGAGCAA+AGG | + | chr4_4:41338975-41338994 | Msa0681210:CDS | 35.0% |
| ! | GAAAAAGTGAGCAAAGGTTT+TGG | + | chr4_4:41338981-41339000 | Msa0681210:CDS | 35.0% |
| !! | GCAAAGGTTTTGGTCTTTTA+AGG | + | chr4_4:41338991-41339010 | Msa0681210:CDS | 35.0% |
| ! | TTTTCCATTCTCGCTTTGTC+TGG | + | chr4_4:41338060-41338079 | Msa0681210:five_prime_UTR | 40.0% |
| ATAACCAGACAAAGCGAGAA+TGG | - | chr4_4:41338067-41338086 | None:intergenic | 40.0% | |
| !!! | GAAGATGAGGTTTGGTTTTG+TGG | - | chr4_4:41338112-41338131 | None:intergenic | 40.0% |
| TAGTGAGGAAAATCAAGGGT+TGG | - | chr4_4:41338136-41338155 | None:intergenic | 40.0% | |
| ! | GTTTTTGACGTTTGACATGG+TGG | - | chr4_4:41338185-41338204 | None:intergenic | 40.0% |
| ! | GTGGTTTTTGACGTTTGACA+TGG | - | chr4_4:41338188-41338207 | None:intergenic | 40.0% |
| TCTCTGTTAATCTTCCTCTC+CGG | - | chr4_4:41338234-41338253 | None:intergenic | 40.0% | |
| ATCGTCATTAACACTTGCAC+GGG | - | chr4_4:41338442-41338461 | None:intergenic | 40.0% | |
| CATCGTCATTAACACTTGCA+CGG | - | chr4_4:41338443-41338462 | None:intergenic | 40.0% | |
| GTACCATTGTAGATGCTCTT+AGG | + | chr4_4:41338750-41338769 | Msa0681210:intron | 40.0% | |
| !! | AGACCTAAGAGCATCTACAA+TGG | - | chr4_4:41338756-41338775 | None:intergenic | 40.0% |
| CTTGAAGAAAGTGACAATGG+TGG | + | chr4_4:41338912-41338931 | Msa0681210:CDS | 40.0% | |
| !!! | GCTCACTTTTTCAACTTGTC+TGG | - | chr4_4:41338973-41338992 | None:intergenic | 40.0% |
| ! | TTTTCCATTCTCGCTTTGTC+TGG | + | chr4_4:41338060-41338079 | Msa0681210:five_prime_UTR | 40.0% |
| ATAACCAGACAAAGCGAGAA+TGG | - | chr4_4:41338067-41338086 | None:intergenic | 40.0% | |
| !!! | GAAGATGAGGTTTGGTTTTG+TGG | - | chr4_4:41338112-41338131 | None:intergenic | 40.0% |
| TAGTGAGGAAAATCAAGGGT+TGG | - | chr4_4:41338136-41338155 | None:intergenic | 40.0% | |
| ! | GTTTTTGACGTTTGACATGG+TGG | - | chr4_4:41338185-41338204 | None:intergenic | 40.0% |
| ! | GTGGTTTTTGACGTTTGACA+TGG | - | chr4_4:41338188-41338207 | None:intergenic | 40.0% |
| TCTCTGTTAATCTTCCTCTC+CGG | - | chr4_4:41338234-41338253 | None:intergenic | 40.0% | |
| ATCGTCATTAACACTTGCAC+GGG | - | chr4_4:41338442-41338461 | None:intergenic | 40.0% | |
| CATCGTCATTAACACTTGCA+CGG | - | chr4_4:41338443-41338462 | None:intergenic | 40.0% | |
| GTACCATTGTAGATGCTCTT+AGG | + | chr4_4:41338750-41338769 | Msa0681210:intron | 40.0% | |
| !! | AGACCTAAGAGCATCTACAA+TGG | - | chr4_4:41338756-41338775 | None:intergenic | 40.0% |
| CTTGAAGAAAGTGACAATGG+TGG | + | chr4_4:41338912-41338931 | Msa0681210:CDS | 40.0% | |
| !!! | GCTCACTTTTTCAACTTGTC+TGG | - | chr4_4:41338973-41338992 | None:intergenic | 40.0% |
| ATCAAGGGTTGGAGAAGATG+AGG | - | chr4_4:41338125-41338144 | None:intergenic | 45.0% | |
| CGTTTGACATGGTGGTAAAG+TGG | - | chr4_4:41338177-41338196 | None:intergenic | 45.0% | |
| GCCGACGAAGTTACTCATTA+AGG | + | chr4_4:41338393-41338412 | Msa0681210:CDS | 45.0% | |
| CGTGCAAGTGTTAATGACGA+TGG | + | chr4_4:41338441-41338460 | Msa0681210:CDS | 45.0% | |
| GTTAATGACGATGGAGTCGA+CGG | + | chr4_4:41338450-41338469 | Msa0681210:CDS | 45.0% | |
| GACGGTTGGAGATTTGATAG+CGG | + | chr4_4:41338468-41338487 | Msa0681210:CDS | 45.0% | |
| !! | ATTTGATAGCGGAGGCTGTA+AGG | + | chr4_4:41338479-41338498 | Msa0681210:CDS | 45.0% |
| AAGCAAGAAGCTTCCTTCGA+CGG | - | chr4_4:41338538-41338557 | None:intergenic | 45.0% | |
| TGGTGGAGACCATAACGTAA+CGG | + | chr4_4:41338929-41338948 | Msa0681210:CDS | 45.0% | |
| TAAACGACGCCGTTACGTTA+TGG | - | chr4_4:41338941-41338960 | None:intergenic | 45.0% | |
| AGTAACTGTTGTTGGCAGCA+TGG | - | chr4_4:41339074-41339093 | None:intergenic | 45.0% | |
| ATCAAGGGTTGGAGAAGATG+AGG | - | chr4_4:41338125-41338144 | None:intergenic | 45.0% | |
| CGTTTGACATGGTGGTAAAG+TGG | - | chr4_4:41338177-41338196 | None:intergenic | 45.0% | |
| GCCGACGAAGTTACTCATTA+AGG | + | chr4_4:41338393-41338412 | Msa0681210:CDS | 45.0% | |
| CGTGCAAGTGTTAATGACGA+TGG | + | chr4_4:41338441-41338460 | Msa0681210:CDS | 45.0% | |
| GTTAATGACGATGGAGTCGA+CGG | + | chr4_4:41338450-41338469 | Msa0681210:CDS | 45.0% | |
| GACGGTTGGAGATTTGATAG+CGG | + | chr4_4:41338468-41338487 | Msa0681210:CDS | 45.0% | |
| !! | ATTTGATAGCGGAGGCTGTA+AGG | + | chr4_4:41338479-41338498 | Msa0681210:CDS | 45.0% |
| AAGCAAGAAGCTTCCTTCGA+CGG | - | chr4_4:41338538-41338557 | None:intergenic | 45.0% | |
| TGGTGGAGACCATAACGTAA+CGG | + | chr4_4:41338929-41338948 | Msa0681210:CDS | 45.0% | |
| TAAACGACGCCGTTACGTTA+TGG | - | chr4_4:41338941-41338960 | None:intergenic | 45.0% | |
| AGTAACTGTTGTTGGCAGCA+TGG | - | chr4_4:41339074-41339093 | None:intergenic | 45.0% | |
| !! | ATAAATAAACAATAAATTAT+TGG | - | chr4_4:41339104-41339123 | None:intergenic | 5.0% |
| !! | ATAAATAAACAATAAATTAT+TGG | - | chr4_4:41339104-41339123 | None:intergenic | 5.0% |
| GGGTTGGAGAAGATGAGGTT+TGG | - | chr4_4:41338120-41338139 | None:intergenic | 50.0% | |
| AAACCACCGTAACAGCCATG+TGG | + | chr4_4:41338201-41338220 | Msa0681210:CDS | 50.0% | |
| GAGCTTCCACATGGCTGTTA+CGG | - | chr4_4:41338210-41338229 | None:intergenic | 50.0% | |
| CACACTTCTGCAACACTGTC+CGG | + | chr4_4:41338274-41338293 | Msa0681210:CDS | 50.0% | |
| ACACTTCTGCAACACTGTCC+GGG | + | chr4_4:41338275-41338294 | Msa0681210:CDS | 50.0% | |
| ACAAGGTCCGGCATAGTCTT+TGG | - | chr4_4:41338316-41338335 | None:intergenic | 50.0% | |
| GGCAATGACTTCTTTGCCAC+CGG | + | chr4_4:41338354-41338373 | Msa0681210:CDS | 50.0% | |
| TGTCTGGGAAAAAACTCCGG+TGG | - | chr4_4:41338373-41338392 | None:intergenic | 50.0% | |
| GGCTGTCTGGGAAAAAACTC+CGG | - | chr4_4:41338376-41338395 | None:intergenic | 50.0% | |
| ! | AGTAACTTCGTCGGCTGTCT+GGG | - | chr4_4:41338388-41338407 | None:intergenic | 50.0% |
| TTAACACTTGCACGGGACCA+AGG | - | chr4_4:41338435-41338454 | None:intergenic | 50.0% | |
| !! | GGTTGGAGATTTGATAGCGG+AGG | + | chr4_4:41338471-41338490 | Msa0681210:CDS | 50.0% |
| TTGTTGGCAGCATGGACAAG+TGG | - | chr4_4:41339066-41339085 | None:intergenic | 50.0% | |
| GGGTTGGAGAAGATGAGGTT+TGG | - | chr4_4:41338120-41338139 | None:intergenic | 50.0% | |
| AAACCACCGTAACAGCCATG+TGG | + | chr4_4:41338201-41338220 | Msa0681210:CDS | 50.0% | |
| GAGCTTCCACATGGCTGTTA+CGG | - | chr4_4:41338210-41338229 | None:intergenic | 50.0% | |
| CACACTTCTGCAACACTGTC+CGG | + | chr4_4:41338274-41338293 | Msa0681210:CDS | 50.0% | |
| ACACTTCTGCAACACTGTCC+GGG | + | chr4_4:41338275-41338294 | Msa0681210:CDS | 50.0% | |
| ACAAGGTCCGGCATAGTCTT+TGG | - | chr4_4:41338316-41338335 | None:intergenic | 50.0% | |
| GGCAATGACTTCTTTGCCAC+CGG | + | chr4_4:41338354-41338373 | Msa0681210:CDS | 50.0% | |
| TGTCTGGGAAAAAACTCCGG+TGG | - | chr4_4:41338373-41338392 | None:intergenic | 50.0% | |
| GGCTGTCTGGGAAAAAACTC+CGG | - | chr4_4:41338376-41338395 | None:intergenic | 50.0% | |
| ! | AGTAACTTCGTCGGCTGTCT+GGG | - | chr4_4:41338388-41338407 | None:intergenic | 50.0% |
| TTAACACTTGCACGGGACCA+AGG | - | chr4_4:41338435-41338454 | None:intergenic | 50.0% | |
| !! | GGTTGGAGATTTGATAGCGG+AGG | + | chr4_4:41338471-41338490 | Msa0681210:CDS | 50.0% |
| TTGTTGGCAGCATGGACAAG+TGG | - | chr4_4:41339066-41339085 | None:intergenic | 50.0% | |
| CTTCCACATGGCTGTTACGG+TGG | - | chr4_4:41338207-41338226 | None:intergenic | 55.0% | |
| ACAGCCATGTGGAAGCTCAC+CGG | + | chr4_4:41338212-41338231 | Msa0681210:CDS | 55.0% | |
| CACTTCTGCAACACTGTCCG+GGG | + | chr4_4:41338276-41338295 | Msa0681210:CDS | 55.0% | |
| TTCCTGTCCTGGACAAGGTC+CGG | - | chr4_4:41338328-41338347 | None:intergenic | 55.0% | |
| ! | GAGTAACTTCGTCGGCTGTC+TGG | - | chr4_4:41338389-41338408 | None:intergenic | 55.0% |
| !! | GTTACGATGATGGGCAGCCT+TGG | + | chr4_4:41338415-41338434 | Msa0681210:CDS | 55.0% |
| ATGACGATGGAGTCGACGGT+TGG | + | chr4_4:41338454-41338473 | Msa0681210:CDS | 55.0% | |
| CCTTCGACGGCAAGATTGGA+CGG | - | chr4_4:41338525-41338544 | None:intergenic | 55.0% | |
| GCTTCCTTCGACGGCAAGAT+TGG | - | chr4_4:41338529-41338548 | None:intergenic | 55.0% | |
| CTTCCACATGGCTGTTACGG+TGG | - | chr4_4:41338207-41338226 | None:intergenic | 55.0% | |
| ACAGCCATGTGGAAGCTCAC+CGG | + | chr4_4:41338212-41338231 | Msa0681210:CDS | 55.0% | |
| CACTTCTGCAACACTGTCCG+GGG | + | chr4_4:41338276-41338295 | Msa0681210:CDS | 55.0% | |
| TTCCTGTCCTGGACAAGGTC+CGG | - | chr4_4:41338328-41338347 | None:intergenic | 55.0% | |
| ! | GAGTAACTTCGTCGGCTGTC+TGG | - | chr4_4:41338389-41338408 | None:intergenic | 55.0% |
| !! | GTTACGATGATGGGCAGCCT+TGG | + | chr4_4:41338415-41338434 | Msa0681210:CDS | 55.0% |
| ATGACGATGGAGTCGACGGT+TGG | + | chr4_4:41338454-41338473 | Msa0681210:CDS | 55.0% | |
| CCTTCGACGGCAAGATTGGA+CGG | - | chr4_4:41338525-41338544 | None:intergenic | 55.0% | |
| GCTTCCTTCGACGGCAAGAT+TGG | - | chr4_4:41338529-41338548 | None:intergenic | 55.0% | |
| CTCTCCGGTGAGCTTCCACA+TGG | - | chr4_4:41338219-41338238 | None:intergenic | 60.0% | |
| CATGTGGAAGCTCACCGGAG+AGG | + | chr4_4:41338217-41338236 | Msa0681210:CDS | 60.0% | |
| CACTGTCCGGGGCAAAACTC+CGG | + | chr4_4:41338287-41338306 | Msa0681210:CDS | 60.0% | |
| GACTATGCCGGACCTTGTCC+AGG | + | chr4_4:41338318-41338337 | Msa0681210:CDS | 60.0% | |
| CACGCTTCCTGTCCTGGACA+AGG | - | chr4_4:41338333-41338352 | None:intergenic | 60.0% | |
| ! | TGTCCAGGACAGGAAGCGTG+CGG | + | chr4_4:41338333-41338352 | Msa0681210:CDS | 60.0% |
| CCGTCCAATCTTGCCGTCGA+AGG | + | chr4_4:41338522-41338541 | Msa0681210:CDS | 60.0% | |
| CTCTCCGGTGAGCTTCCACA+TGG | - | chr4_4:41338219-41338238 | None:intergenic | 60.0% | |
| CATGTGGAAGCTCACCGGAG+AGG | + | chr4_4:41338217-41338236 | Msa0681210:CDS | 60.0% | |
| CACTGTCCGGGGCAAAACTC+CGG | + | chr4_4:41338287-41338306 | Msa0681210:CDS | 60.0% | |
| GACTATGCCGGACCTTGTCC+AGG | + | chr4_4:41338318-41338337 | Msa0681210:CDS | 60.0% | |
| CACGCTTCCTGTCCTGGACA+AGG | - | chr4_4:41338333-41338352 | None:intergenic | 60.0% | |
| ! | TGTCCAGGACAGGAAGCGTG+CGG | + | chr4_4:41338333-41338352 | Msa0681210:CDS | 60.0% |
| CCGTCCAATCTTGCCGTCGA+AGG | + | chr4_4:41338522-41338541 | Msa0681210:CDS | 60.0% | |
| TGTCCGGGGCAAAACTCCGG+CGG | + | chr4_4:41338290-41338309 | Msa0681210:CDS | 65.0% | |
| CCGGCATAGTCTTTGGCCGC+CGG | - | chr4_4:41338309-41338328 | None:intergenic | 65.0% | |
| CCGGCGGCCAAAGACTATGC+CGG | + | chr4_4:41338306-41338325 | Msa0681210:CDS | 65.0% | |
| TGCCGGACCTTGTCCAGGAC+AGG | + | chr4_4:41338323-41338342 | Msa0681210:CDS | 65.0% | |
| TTGCCGCACGCTTCCTGTCC+TGG | - | chr4_4:41338339-41338358 | None:intergenic | 65.0% | |
| TGTCCGGGGCAAAACTCCGG+CGG | + | chr4_4:41338290-41338309 | Msa0681210:CDS | 65.0% | |
| CCGGCATAGTCTTTGGCCGC+CGG | - | chr4_4:41338309-41338328 | None:intergenic | 65.0% | |
| CCGGCGGCCAAAGACTATGC+CGG | + | chr4_4:41338306-41338325 | Msa0681210:CDS | 65.0% | |
| TGCCGGACCTTGTCCAGGAC+AGG | + | chr4_4:41338323-41338342 | Msa0681210:CDS | 65.0% | |
| TTGCCGCACGCTTCCTGTCC+TGG | - | chr4_4:41338339-41338358 | None:intergenic | 65.0% | |
| ! | TGGCCGCCGGAGTTTTGCCC+CGG | - | chr4_4:41338296-41338315 | None:intergenic | 70.0% |
| ! | TGGCCGCCGGAGTTTTGCCC+CGG | - | chr4_4:41338296-41338315 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 41338016 | 41339246 | 41338016 | ID=Msa0681210;Name=Msa0681210 |
| chr4_4 | mRNA | 41338016 | 41339246 | 41338016 | ID=Msa0681210-mRNA-1;Parent=Msa0681210;Name=Msa0681210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|2|212|196 |
| chr4_4 | exon | 41338016 | 41338589 | 41338016 | ID=Msa0681210-mRNA-1:exon:9797;Parent=Msa0681210-mRNA-1 |
| chr4_4 | exon | 41338847 | 41339246 | 41338847 | ID=Msa0681210-mRNA-1:exon:9798;Parent=Msa0681210-mRNA-1 |
| chr4_4 | five_prime_UTR | 41338016 | 41338186 | 41338016 | ID=Msa0681210-mRNA-1:five_prime_utr;Parent=Msa0681210-mRNA-1 |
| chr4_4 | CDS | 41338187 | 41338589 | 41338187 | ID=Msa0681210-mRNA-1:cds;Parent=Msa0681210-mRNA-1 |
| chr4_4 | CDS | 41338847 | 41339034 | 41338847 | ID=Msa0681210-mRNA-1:cds;Parent=Msa0681210-mRNA-1 |
| chr4_4 | three_prime_UTR | 41339035 | 41339246 | 41339035 | ID=Msa0681210-mRNA-1:three_prime_utr;Parent=Msa0681210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
