Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216220 | AAO72632.1 | 82.432 | 74 | 13 | 0 | 1 | 74 | 1 | 74 | 1.70e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216220 | sp|B3F051|DEF_LENCC | 71.622 | 74 | 21 | 0 | 1 | 74 | 1 | 74 | 2.44e-36 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216220 | Q67GH8 | 82.432 | 74 | 13 | 0 | 1 | 74 | 1 | 74 | 8.14e-39 | 132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006050 | Msa0216220 | 0.800140 | 1.657057e-48 | -8.615850e-47 |
| Msa0064550 | Msa0216220 | 0.823449 | 1.377131e-53 | -8.615850e-47 |
| Msa0069930 | Msa0216220 | 0.827858 | 1.240361e-54 | -8.615850e-47 |
| Msa0072830 | Msa0216220 | 0.807198 | 5.682213e-50 | -8.615850e-47 |
| Msa0072860 | Msa0216220 | 0.806709 | 7.212232e-50 | -8.615850e-47 |
| Msa0089510 | Msa0216220 | 0.828447 | 8.944694e-55 | -8.615850e-47 |
| Msa0089520 | Msa0216220 | 0.826289 | 2.944087e-54 | -8.615850e-47 |
| Msa0109490 | Msa0216220 | 0.808450 | 3.079349e-50 | -8.615850e-47 |
| Msa0132920 | Msa0216220 | 0.805461 | 1.319835e-49 | -8.615850e-47 |
| Msa0154240 | Msa0216220 | 0.852440 | 4.608977e-61 | -8.615850e-47 |
| Msa0178940 | Msa0216220 | 0.809390 | 1.938020e-50 | -8.615850e-47 |
| Msa0187980 | Msa0216220 | 0.807597 | 4.675739e-50 | -8.615850e-47 |
| Msa0216210 | Msa0216220 | 0.802932 | 4.436335e-49 | -8.615850e-47 |
| Msa0216220 | Msa0224370 | 0.802191 | 6.306039e-49 | -8.615850e-47 |
| Msa0216220 | Msa0224400 | 0.817607 | 3.020275e-52 | -8.615850e-47 |
| Msa0216220 | Msa0243160 | 0.813530 | 2.443329e-51 | -8.615850e-47 |
| Msa0216220 | Msa0253160 | 0.801684 | 8.017883e-49 | -8.615850e-47 |
| Msa0216220 | Msa0260180 | 0.842106 | 3.166003e-58 | -8.615850e-47 |
| Msa0216220 | Msa0260190 | 0.838000 | 3.728107e-57 | -8.615850e-47 |
| Msa0216220 | Msa0291940 | 0.800143 | 1.654810e-48 | -8.615850e-47 |
| Msa0216220 | Msa0295570 | 0.894510 | 2.305110e-75 | -8.615850e-47 |
| Msa0216220 | Msa0303440 | 0.813973 | 1.951425e-51 | -8.615850e-47 |
| Msa0216220 | Msa0303500 | 0.819794 | 9.631535e-53 | -8.615850e-47 |
| Msa0216220 | Msa0319690 | -0.804628 | 1.972200e-49 | -8.615850e-47 |
| Msa0216220 | Msa0333900 | 0.812869 | 3.412349e-51 | -8.615850e-47 |
| Msa0216220 | Msa0334020 | 0.808103 | 3.650880e-50 | -8.615850e-47 |
| Msa0216220 | Msa0344680 | 0.820329 | 7.266951e-53 | -8.615850e-47 |
| Msa0216220 | Msa0392050 | 0.823697 | 1.204687e-53 | -8.615850e-47 |
| Msa0216220 | Msa0401340 | 0.801994 | 6.922597e-49 | -8.615850e-47 |
| Msa0216220 | Msa0404060 | 0.848133 | 7.441685e-60 | -8.615850e-47 |
| Msa0216220 | Msa0404690 | 0.800811 | 1.209800e-48 | -8.615850e-47 |
| Msa0216220 | Msa0416540 | 0.808790 | 2.604396e-50 | -8.615850e-47 |
| Msa0216220 | Msa0428330 | 0.808924 | 2.438019e-50 | -8.615850e-47 |
| Msa0216220 | Msa0469950 | 0.825758 | 3.936403e-54 | -8.615850e-47 |
| Msa0216220 | Msa0500490 | 0.814889 | 1.224177e-51 | -8.615850e-47 |
| Msa0216220 | Msa0530340 | 0.825981 | 3.485396e-54 | -8.615850e-47 |
| Msa0216220 | Msa0545230 | 0.835200 | 1.926869e-56 | -8.615850e-47 |
| Msa0216220 | Msa0546080 | 0.824275 | 8.815290e-54 | -8.615850e-47 |
| Msa0216220 | Msa0549540 | 0.818261 | 2.149598e-52 | -8.615850e-47 |
| Msa0216220 | Msa0555960 | 0.807844 | 4.143928e-50 | -8.615850e-47 |
| Msa0216220 | Msa0556070 | 0.801270 | 9.744950e-49 | -8.615850e-47 |
| Msa0216220 | Msa0568600 | 0.806292 | 8.828711e-50 | -8.615850e-47 |
| Msa0216220 | Msa0568610 | 0.825196 | 5.348886e-54 | -8.615850e-47 |
| Msa0216220 | Msa0584280 | 0.809128 | 2.204842e-50 | -8.615850e-47 |
| Msa0216220 | Msa0600820 | 0.835406 | 1.709840e-56 | -8.615850e-47 |
| Msa0216220 | Msa0604880 | 0.828797 | 7.361314e-55 | -8.615850e-47 |
| Msa0216220 | Msa0610360 | 0.812610 | 3.887146e-51 | -8.615850e-47 |
| Msa0216220 | Msa0618520 | 0.824305 | 8.675076e-54 | -8.615850e-47 |
| Msa0216220 | Msa0624040 | 0.806037 | 9.992288e-50 | -8.615850e-47 |
| Msa0216220 | Msa0627050 | 0.817214 | 3.703978e-52 | -8.615850e-47 |
| Msa0216220 | Msa0643020 | -0.815044 | 1.131023e-51 | -8.615850e-47 |
| Msa0216220 | Msa0646190 | 0.852513 | 4.394631e-61 | -8.615850e-47 |
| Msa0216220 | Msa0646340 | 0.827996 | 1.148762e-54 | -8.615850e-47 |
| Msa0216220 | Msa0649250 | 0.800712 | 1.266970e-48 | -8.615850e-47 |
| Msa0216220 | Msa0650890 | 0.812286 | 4.575510e-51 | -8.615850e-47 |
| Msa0216220 | Msa0675010 | 0.801968 | 7.009240e-49 | -8.615850e-47 |
| Msa0216220 | Msa0681210 | 0.846969 | 1.554794e-59 | -8.615850e-47 |
| Msa0216220 | Msa0685890 | 0.805725 | 1.162029e-49 | -8.615850e-47 |
| Msa0216220 | Msa0702200 | 0.810367 | 1.194114e-50 | -8.615850e-47 |
| Msa0216220 | Msa0702310 | 0.810582 | 1.073070e-50 | -8.615850e-47 |
| Msa0216220 | Msa0702620 | 0.818152 | 2.275082e-52 | -8.615850e-47 |
| Msa0216220 | Msa0705810 | 0.816748 | 4.713382e-52 | -8.615850e-47 |
| Msa0216220 | Msa0742090 | 0.802995 | 4.304546e-49 | -8.615850e-47 |
| Msa0216220 | Msa0786100 | 0.837156 | 6.137370e-57 | -8.615850e-47 |
| Msa0216220 | Msa0793100 | 0.837857 | 4.058052e-57 | -8.615850e-47 |
| Msa0216220 | Msa0806720 | 0.801465 | 8.891661e-49 | -8.615850e-47 |
| Msa0216220 | Msa0806760 | 0.808652 | 2.788399e-50 | -8.615850e-47 |
| Msa0216220 | Msa0879650 | 0.804907 | 1.724578e-49 | -8.615850e-47 |
| Msa0216220 | Msa0912110 | 0.822549 | 2.232000e-53 | -8.615850e-47 |
| Msa0216220 | Msa0913260 | 0.800083 | 1.702069e-48 | -8.615850e-47 |
| Msa0216220 | Msa0968780 | 0.828490 | 8.735516e-55 | -8.615850e-47 |
| Msa0216220 | Msa0984000 | 0.838953 | 2.116769e-57 | -8.615850e-47 |
| Msa0216220 | Msa0999590 | 0.805982 | 1.026288e-49 | -8.615850e-47 |
| Msa0216220 | Msa1004720 | 0.818982 | 1.475348e-52 | -8.615850e-47 |
| Msa0216220 | Msa1014350 | 0.805608 | 1.229759e-49 | -8.615850e-47 |
| Msa0216220 | Msa1036250 | 0.814882 | 1.228426e-51 | -8.615850e-47 |
| Msa0216220 | Msa1040730 | -0.818146 | 2.281892e-52 | -8.615850e-47 |
| Msa0216220 | Msa1053690 | 0.846343 | 2.305306e-59 | -8.615850e-47 |
| Msa0216220 | Msa1061130 | 0.827658 | 1.385068e-54 | -8.615850e-47 |
| Msa0216220 | Msa1061670 | -0.801759 | 7.737143e-49 | -8.615850e-47 |
| Msa0216220 | Msa1076280 | -0.814865 | 1.239066e-51 | -8.615850e-47 |
| Msa0216220 | Msa1076520 | 0.817587 | 3.052226e-52 | -8.615850e-47 |
| Msa0216220 | Msa1082150 | 0.825461 | 4.628054e-54 | -8.615850e-47 |
| Msa0216220 | Msa1091230 | 0.814385 | 1.582720e-51 | -8.615850e-47 |
| Msa0216220 | Msa1093390 | 0.812790 | 3.551526e-51 | -8.615850e-47 |
| Msa0216220 | Msa1115580 | 0.819380 | 1.197255e-52 | -8.615850e-47 |
| Msa0216220 | Msa1122720 | 0.874864 | 4.839430e-68 | -8.615850e-47 |
| Msa0216220 | Msa1144730 | 0.822802 | 1.949591e-53 | -8.615850e-47 |
| Msa0216220 | Msa1173380 | 0.824639 | 7.240143e-54 | -8.615850e-47 |
| Msa0216220 | Msa1182800 | 0.800275 | 1.555705e-48 | -8.615850e-47 |
| Msa0216220 | Msa1182830 | 0.804511 | 2.085970e-49 | -8.615850e-47 |
| Msa0216220 | Msa1184010 | 0.801211 | 1.002064e-48 | -8.615850e-47 |
| Msa0216220 | Msa1193400 | 0.808482 | 3.030271e-50 | -8.615850e-47 |
| Msa0216220 | Msa1193430 | 0.806385 | 8.442216e-50 | -8.615850e-47 |
| Msa0216220 | Msa1209800 | 0.819699 | 1.012783e-52 | -8.615850e-47 |
| Msa0216220 | Msa1228350 | 0.802793 | 4.739142e-49 | -8.615850e-47 |
| Msa0216220 | Msa1233770 | 0.810900 | 9.158678e-51 | -8.615850e-47 |
| Msa0216220 | Msa1243730 | 0.807817 | 4.199916e-50 | -8.615850e-47 |
| Msa0216220 | Msa1276080 | 0.808680 | 2.749404e-50 | -8.615850e-47 |
| Msa0216220 | Msa1306200 | 0.897158 | 1.843218e-76 | -8.615850e-47 |
| Msa0216220 | Msa1329740 | -0.806211 | 9.183871e-50 | -8.615850e-47 |
| Msa0216220 | Msa1338590 | 0.876794 | 1.051283e-68 | -8.615850e-47 |
| Msa0216220 | Msa1349810 | 0.825294 | 5.070402e-54 | -8.615850e-47 |
| Msa0216220 | Msa1356460 | 0.804659 | 1.942580e-49 | -8.615850e-47 |
| Msa0216220 | Msa1359890 | 0.828212 | 1.018965e-54 | -8.615850e-47 |
| Msa0216220 | Msa1361190 | 0.814051 | 1.876003e-51 | -8.615850e-47 |
| Msa0216220 | Msa1370930 | -0.801316 | 9.537734e-49 | -8.615850e-47 |
| Msa0216220 | Msa1373390 | 0.804655 | 1.946235e-49 | -8.615850e-47 |
| Msa0216220 | Msa1394900 | 0.830508 | 2.823708e-55 | -8.615850e-47 |
| Msa0216220 | Msa1443550 | 0.817167 | 3.794303e-52 | -8.615850e-47 |
| Msa0216220 | Msa1459540 | 0.843396 | 1.437856e-58 | -8.615850e-47 |
| Msa0216220 | Msa1466130 | -0.802897 | 4.511021e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216220 | MtrunA17_Chr2g0317751 | 78.378 | 74 | 14 | 1 | 1 | 74 | 1 | 72 | 9.81e-38 | 120 |
| Msa0216220 | MtrunA17_Chr2g0317741 | 64.865 | 74 | 25 | 1 | 1 | 74 | 1 | 73 | 2.72e-23 | 84.0 |
| Msa0216220 | MtrunA17_Chr8g0385311 | 44.000 | 75 | 40 | 2 | 1 | 74 | 1 | 74 | 1.07e-12 | 57.0 |
| Msa0216220 | MtrunA17_Chr8g0337781 | 41.892 | 74 | 38 | 3 | 1 | 71 | 1 | 72 | 2.12e-12 | 56.2 |
| Msa0216220 | MtrunA17_Chr8g0337061 | 37.662 | 77 | 44 | 2 | 1 | 74 | 9 | 84 | 8.54e-11 | 52.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAAACACTTGTGAGAATT+TGG | 0.253219 | 2_1:+61945321 | Msa0216220:CDS |
| GCCACTAACTAAATGCTCTT+TGG | 0.345228 | 2_1:-61945401 | None:intergenic |
| CAAGCATGGATACATATATA+TGG | 0.351007 | 2_1:+61945491 | Msa0216220:three_prime_UTR |
| GTGCACAAGAAACTGTTAAA+TGG | 0.351514 | 2_1:+61945450 | Msa0216220:exon |
| ACCAAAGAGCATTTAGTTAG+TGG | 0.385720 | 2_1:+61945400 | Msa0216220:CDS |
| ACATTCAAGGGACCATGTTT+CGG | 0.416979 | 2_1:+61945349 | Msa0216220:CDS |
| TCATATTTATCATTAAGTTA+TGG | 0.428066 | 2_1:+61944608 | Msa0216220:exon |
| ATTTAGTTAGTGGCAGGTGC+AGG | 0.446134 | 2_1:+61945410 | Msa0216220:CDS |
| GCAGGGATGACTTTCGTTGT+TGG | 0.447075 | 2_1:+61945428 | Msa0216220:CDS |
| CAACAAAGAGAACGAGGAAG+AGG | 0.464218 | 2_1:-61944659 | None:intergenic |
| AGAAACTGTTAAATGGATCA+TGG | 0.482667 | 2_1:+61945457 | Msa0216220:exon |
| ATGGAGAAGAAATCATTAGT+TGG | 0.488503 | 2_1:+61944627 | Msa0216220:CDS |
| GAATTTGGCTGGTACATTCA+AGG | 0.488760 | 2_1:+61945336 | Msa0216220:CDS |
| AACACTTGTGAGAATTTGGC+TGG | 0.492030 | 2_1:+61945325 | Msa0216220:CDS |
| ATATATGTATCCATGCTTGT+TGG | 0.495303 | 2_1:-61945487 | None:intergenic |
| AAGAGCATTTAGTTAGTGGC+AGG | 0.516402 | 2_1:+61945404 | Msa0216220:CDS |
| AATTTGGCTGGTACATTCAA+GGG | 0.536130 | 2_1:+61945337 | Msa0216220:CDS |
| ATACGTTATGCACTATATTG+TGG | 0.546559 | 2_1:-61945613 | None:intergenic |
| TTAAGTGTTTGTGTCTAGTG+TGG | 0.553780 | 2_1:-61944559 | None:intergenic |
| CAGTTTGAGTTACCGAAACA+TGG | 0.557423 | 2_1:-61945361 | None:intergenic |
| TTTAGTTAGTGGCAGGTGCA+GGG | 0.572800 | 2_1:+61945411 | Msa0216220:CDS |
| TCTGAATGCAGAAGAAATTG+TGG | 0.648620 | 2_1:+61945291 | Msa0216220:intron |
| AGAAGAAATTGTGGTGACTG+AGG | 0.707441 | 2_1:+61945300 | Msa0216220:intron |
| TACGTGCAACAAAGAGAACG+AGG | 0.716392 | 2_1:-61944665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATATACTAAGAA+TGG | - | chr2_1:61944701-61944720 | None:intergenic | 10.0% |
| !! | TATAAAAAAATAATCAAATG+TGG | + | chr2_1:61944973-61944992 | Msa0216220:intron | 10.0% |
| !! | ATATAATAATATACTAAGAA+TGG | - | chr2_1:61944701-61944720 | None:intergenic | 10.0% |
| !! | TATAAAAAAATAATCAAATG+TGG | + | chr2_1:61944973-61944992 | Msa0216220:intron | 10.0% |
| !! | TCATATTTATCATTAAGTTA+TGG | + | chr2_1:61944608-61944627 | Msa0216220:exon | 15.0% |
| !!! | TGTTTTACGTTAATTTTTTT+AGG | - | chr2_1:61945013-61945032 | None:intergenic | 15.0% |
| !! | TAATAATACAAATTGAACTT+TGG | + | chr2_1:61945088-61945107 | Msa0216220:intron | 15.0% |
| !! | AAAAAAATACTTTCTAATAG+TGG | - | chr2_1:61945142-61945161 | None:intergenic | 15.0% |
| !! | TCATATTTATCATTAAGTTA+TGG | + | chr2_1:61944608-61944627 | Msa0216220:exon | 15.0% |
| !!! | TGTTTTACGTTAATTTTTTT+AGG | - | chr2_1:61945013-61945032 | None:intergenic | 15.0% |
| !! | TAATAATACAAATTGAACTT+TGG | + | chr2_1:61945088-61945107 | Msa0216220:intron | 15.0% |
| !! | AAAAAAATACTTTCTAATAG+TGG | - | chr2_1:61945142-61945161 | None:intergenic | 15.0% |
| !!! | TGTATAATTTTGATGTCTTG+TGG | - | chr2_1:61944853-61944872 | None:intergenic | 25.0% |
| ! | TACCTAAATGTTCGAAAAAT+GGG | - | chr2_1:61945690-61945709 | None:intergenic | 25.0% |
| !!! | TGTATAATTTTGATGTCTTG+TGG | - | chr2_1:61944853-61944872 | None:intergenic | 25.0% |
| ! | TACCTAAATGTTCGAAAAAT+GGG | - | chr2_1:61945690-61945709 | None:intergenic | 25.0% |
| ATGGAGAAGAAATCATTAGT+TGG | + | chr2_1:61944627-61944646 | Msa0216220:CDS | 30.0% | |
| AAATTGAACTTTGGATAGCA+TGG | + | chr2_1:61945097-61945116 | Msa0216220:intron | 30.0% | |
| AATTGAACTTTGGATAGCAT+GGG | + | chr2_1:61945098-61945117 | Msa0216220:intron | 30.0% | |
| AGAAACTGTTAAATGGATCA+TGG | + | chr2_1:61945457-61945476 | Msa0216220:exon | 30.0% | |
| ATATATGTATCCATGCTTGT+TGG | - | chr2_1:61945490-61945509 | None:intergenic | 30.0% | |
| CAAGCATGGATACATATATA+TGG | + | chr2_1:61945491-61945510 | Msa0216220:three_prime_UTR | 30.0% | |
| ATACGTTATGCACTATATTG+TGG | - | chr2_1:61945616-61945635 | None:intergenic | 30.0% | |
| !! | ATCCCATTTTTCGAACATTT+AGG | + | chr2_1:61945685-61945704 | Msa0216220:three_prime_UTR | 30.0% |
| GTACCTAAATGTTCGAAAAA+TGG | - | chr2_1:61945691-61945710 | None:intergenic | 30.0% | |
| TTTCGAACATTTAGGTACTA+TGG | + | chr2_1:61945693-61945712 | Msa0216220:three_prime_UTR | 30.0% | |
| ATGGAGAAGAAATCATTAGT+TGG | + | chr2_1:61944627-61944646 | Msa0216220:CDS | 30.0% | |
| AAATTGAACTTTGGATAGCA+TGG | + | chr2_1:61945097-61945116 | Msa0216220:intron | 30.0% | |
| AATTGAACTTTGGATAGCAT+GGG | + | chr2_1:61945098-61945117 | Msa0216220:intron | 30.0% | |
| AGAAACTGTTAAATGGATCA+TGG | + | chr2_1:61945457-61945476 | Msa0216220:exon | 30.0% | |
| ATATATGTATCCATGCTTGT+TGG | - | chr2_1:61945490-61945509 | None:intergenic | 30.0% | |
| CAAGCATGGATACATATATA+TGG | + | chr2_1:61945491-61945510 | Msa0216220:three_prime_UTR | 30.0% | |
| ATACGTTATGCACTATATTG+TGG | - | chr2_1:61945616-61945635 | None:intergenic | 30.0% | |
| !! | ATCCCATTTTTCGAACATTT+AGG | + | chr2_1:61945685-61945704 | Msa0216220:three_prime_UTR | 30.0% |
| GTACCTAAATGTTCGAAAAA+TGG | - | chr2_1:61945691-61945710 | None:intergenic | 30.0% | |
| TTAAGTGTTTGTGTCTAGTG+TGG | - | chr2_1:61944562-61944581 | None:intergenic | 35.0% | |
| TCTGAATGCAGAAGAAATTG+TGG | + | chr2_1:61945291-61945310 | Msa0216220:intron | 35.0% | |
| AATTTGGCTGGTACATTCAA+GGG | + | chr2_1:61945337-61945356 | Msa0216220:CDS | 35.0% | |
| !! | ACCAAAGAGCATTTAGTTAG+TGG | + | chr2_1:61945400-61945419 | Msa0216220:CDS | 35.0% |
| GTGCACAAGAAACTGTTAAA+TGG | + | chr2_1:61945450-61945469 | Msa0216220:exon | 35.0% | |
| TTAAGTGTTTGTGTCTAGTG+TGG | - | chr2_1:61944562-61944581 | None:intergenic | 35.0% | |
| TCTGAATGCAGAAGAAATTG+TGG | + | chr2_1:61945291-61945310 | Msa0216220:intron | 35.0% | |
| AATTTGGCTGGTACATTCAA+GGG | + | chr2_1:61945337-61945356 | Msa0216220:CDS | 35.0% | |
| !! | ACCAAAGAGCATTTAGTTAG+TGG | + | chr2_1:61945400-61945419 | Msa0216220:CDS | 35.0% |
| GTGCACAAGAAACTGTTAAA+TGG | + | chr2_1:61945450-61945469 | Msa0216220:exon | 35.0% | |
| CGCATGATGTCATTAAGACT+TGG | - | chr2_1:61944817-61944836 | None:intergenic | 40.0% | |
| AGAAGAAATTGTGGTGACTG+AGG | + | chr2_1:61945300-61945319 | Msa0216220:intron | 40.0% | |
| GGCAAACACTTGTGAGAATT+TGG | + | chr2_1:61945321-61945340 | Msa0216220:CDS | 40.0% | |
| AACACTTGTGAGAATTTGGC+TGG | + | chr2_1:61945325-61945344 | Msa0216220:CDS | 40.0% | |
| GAATTTGGCTGGTACATTCA+AGG | + | chr2_1:61945336-61945355 | Msa0216220:CDS | 40.0% | |
| ACATTCAAGGGACCATGTTT+CGG | + | chr2_1:61945349-61945368 | Msa0216220:CDS | 40.0% | |
| ! | CAGTTTGAGTTACCGAAACA+TGG | - | chr2_1:61945364-61945383 | None:intergenic | 40.0% |
| GCCACTAACTAAATGCTCTT+TGG | - | chr2_1:61945404-61945423 | None:intergenic | 40.0% | |
| !! | AAGAGCATTTAGTTAGTGGC+AGG | + | chr2_1:61945404-61945423 | Msa0216220:CDS | 40.0% |
| ! | TGGATTTTCTCCAACAAGCA+TGG | + | chr2_1:61945477-61945496 | Msa0216220:three_prime_UTR | 40.0% |
| CGCATGATGTCATTAAGACT+TGG | - | chr2_1:61944817-61944836 | None:intergenic | 40.0% | |
| AGAAGAAATTGTGGTGACTG+AGG | + | chr2_1:61945300-61945319 | Msa0216220:intron | 40.0% | |
| GGCAAACACTTGTGAGAATT+TGG | + | chr2_1:61945321-61945340 | Msa0216220:CDS | 40.0% | |
| AACACTTGTGAGAATTTGGC+TGG | + | chr2_1:61945325-61945344 | Msa0216220:CDS | 40.0% | |
| GAATTTGGCTGGTACATTCA+AGG | + | chr2_1:61945336-61945355 | Msa0216220:CDS | 40.0% | |
| ACATTCAAGGGACCATGTTT+CGG | + | chr2_1:61945349-61945368 | Msa0216220:CDS | 40.0% | |
| ! | CAGTTTGAGTTACCGAAACA+TGG | - | chr2_1:61945364-61945383 | None:intergenic | 40.0% |
| GCCACTAACTAAATGCTCTT+TGG | - | chr2_1:61945404-61945423 | None:intergenic | 40.0% | |
| !! | AAGAGCATTTAGTTAGTGGC+AGG | + | chr2_1:61945404-61945423 | Msa0216220:CDS | 40.0% |
| ! | TGGATTTTCTCCAACAAGCA+TGG | + | chr2_1:61945477-61945496 | Msa0216220:three_prime_UTR | 40.0% |
| CAACAAAGAGAACGAGGAAG+AGG | - | chr2_1:61944662-61944681 | None:intergenic | 45.0% | |
| TACGTGCAACAAAGAGAACG+AGG | - | chr2_1:61944668-61944687 | None:intergenic | 45.0% | |
| ATTTAGTTAGTGGCAGGTGC+AGG | + | chr2_1:61945410-61945429 | Msa0216220:CDS | 45.0% | |
| TTTAGTTAGTGGCAGGTGCA+GGG | + | chr2_1:61945411-61945430 | Msa0216220:CDS | 45.0% | |
| CAACAAAGAGAACGAGGAAG+AGG | - | chr2_1:61944662-61944681 | None:intergenic | 45.0% | |
| TACGTGCAACAAAGAGAACG+AGG | - | chr2_1:61944668-61944687 | None:intergenic | 45.0% | |
| ATTTAGTTAGTGGCAGGTGC+AGG | + | chr2_1:61945410-61945429 | Msa0216220:CDS | 45.0% | |
| TTTAGTTAGTGGCAGGTGCA+GGG | + | chr2_1:61945411-61945430 | Msa0216220:CDS | 45.0% | |
| !!! | ACTTTAATTTTTTTTAATAA+TGG | + | chr2_1:61944894-61944913 | Msa0216220:intron | 5.0% |
| !!! | ACTTTAATTTTTTTTAATAA+TGG | + | chr2_1:61944894-61944913 | Msa0216220:intron | 5.0% |
| GCAGGGATGACTTTCGTTGT+TGG | + | chr2_1:61945428-61945447 | Msa0216220:CDS | 50.0% | |
| GCAGGGATGACTTTCGTTGT+TGG | + | chr2_1:61945428-61945447 | Msa0216220:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 61944516 | 61945712 | 61944516 | ID=Msa0216220;Name=Msa0216220 |
| chr2_1 | mRNA | 61944516 | 61945712 | 61944516 | ID=Msa0216220-mRNA-1;Parent=Msa0216220;Name=Msa0216220-mRNA-1;_AED=0.37;_eAED=0.37;_QI=111|1|1|1|0|0|2|244|74 |
| chr2_1 | exon | 61944516 | 61944684 | 61944516 | ID=Msa0216220-mRNA-1:exon:17110;Parent=Msa0216220-mRNA-1 |
| chr2_1 | exon | 61945302 | 61945712 | 61945302 | ID=Msa0216220-mRNA-1:exon:17111;Parent=Msa0216220-mRNA-1 |
| chr2_1 | five_prime_UTR | 61944516 | 61944626 | 61944516 | ID=Msa0216220-mRNA-1:five_prime_utr;Parent=Msa0216220-mRNA-1 |
| chr2_1 | CDS | 61944627 | 61944684 | 61944627 | ID=Msa0216220-mRNA-1:cds;Parent=Msa0216220-mRNA-1 |
| chr2_1 | CDS | 61945302 | 61945468 | 61945302 | ID=Msa0216220-mRNA-1:cds;Parent=Msa0216220-mRNA-1 |
| chr2_1 | three_prime_UTR | 61945469 | 61945712 | 61945469 | ID=Msa0216220-mRNA-1:three_prime_utr;Parent=Msa0216220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
