Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201390 | XP_013463392.1 | 95.660 | 576 | 25 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201390 | A0A072VH05 | 95.660 | 576 | 25 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1138 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041000 | Msa0201390 | 0.830974 | 2.170261e-55 | -8.615850e-47 |
| Msa0043380 | Msa0201390 | 0.800216 | 1.599040e-48 | -8.615850e-47 |
| Msa0088550 | Msa0201390 | 0.835408 | 1.707527e-56 | -8.615850e-47 |
| Msa0093440 | Msa0201390 | 0.809423 | 1.906025e-50 | -8.615850e-47 |
| Msa0109990 | Msa0201390 | 0.806621 | 7.527831e-50 | -8.615850e-47 |
| Msa0135360 | Msa0201390 | 0.832481 | 9.225773e-56 | -8.615850e-47 |
| Msa0135590 | Msa0201390 | 0.816333 | 5.838261e-52 | -8.615850e-47 |
| Msa0141230 | Msa0201390 | 0.809218 | 2.109596e-50 | -8.615850e-47 |
| Msa0153440 | Msa0201390 | 0.813518 | 2.457769e-51 | -8.615850e-47 |
| Msa0179860 | Msa0201390 | 0.843707 | 1.187228e-58 | -8.615850e-47 |
| Msa0190640 | Msa0201390 | 0.803334 | 3.663197e-49 | -8.615850e-47 |
| Msa0201330 | Msa0201390 | 0.865194 | 7.046159e-65 | -8.615850e-47 |
| Msa0201370 | Msa0201390 | 0.866255 | 3.258665e-65 | -8.615850e-47 |
| Msa0201390 | Msa0203070 | 0.822304 | 2.545130e-53 | -8.615850e-47 |
| Msa0201390 | Msa0211670 | 0.807847 | 4.137861e-50 | -8.615850e-47 |
| Msa0201390 | Msa0243910 | 0.850457 | 1.677469e-60 | -8.615850e-47 |
| Msa0201390 | Msa0243930 | 0.864431 | 1.222174e-64 | -8.615850e-47 |
| Msa0201390 | Msa0243940 | 0.951049 | 4.627521e-109 | -8.615850e-47 |
| Msa0201390 | Msa0245880 | 0.801949 | 7.071143e-49 | -8.615850e-47 |
| Msa0201390 | Msa0256270 | 0.812883 | 3.388147e-51 | -8.615850e-47 |
| Msa0201390 | Msa0282590 | 0.845930 | 2.986955e-59 | -8.615850e-47 |
| Msa0201390 | Msa0282600 | 0.895366 | 1.026618e-75 | -8.615850e-47 |
| Msa0201390 | Msa0362740 | 0.808707 | 2.712740e-50 | -8.615850e-47 |
| Msa0201390 | Msa0586430 | 0.801500 | 8.746373e-49 | -8.615850e-47 |
| Msa0201390 | Msa0589610 | 0.812377 | 4.371230e-51 | -8.615850e-47 |
| Msa0201390 | Msa0607180 | 0.810729 | 9.971942e-51 | -8.615850e-47 |
| Msa0201390 | Msa0618430 | 0.815627 | 8.390524e-52 | -8.615850e-47 |
| Msa0201390 | Msa0641020 | 0.809222 | 2.104819e-50 | -8.615850e-47 |
| Msa0201390 | Msa0645460 | 0.801446 | 8.967952e-49 | -8.615850e-47 |
| Msa0201390 | Msa0647360 | 0.805453 | 1.325467e-49 | -8.615850e-47 |
| Msa0201390 | Msa0660870 | 0.813730 | 2.207549e-51 | -8.615850e-47 |
| Msa0201390 | Msa0664160 | 0.804910 | 1.721370e-49 | -8.615850e-47 |
| Msa0201390 | Msa0686850 | 0.813211 | 2.871248e-51 | -8.615850e-47 |
| Msa0201390 | Msa0696770 | 0.804653 | 1.947912e-49 | -8.615850e-47 |
| Msa0201390 | Msa0716750 | 0.803987 | 2.681137e-49 | -8.615850e-47 |
| Msa0201390 | Msa0733200 | 0.811984 | 5.325929e-51 | -8.615850e-47 |
| Msa0201390 | Msa0757980 | 0.803068 | 4.158228e-49 | -8.615850e-47 |
| Msa0201390 | Msa0799280 | 0.807452 | 5.020197e-50 | -8.615850e-47 |
| Msa0201390 | Msa0818030 | 0.810026 | 1.414420e-50 | -8.615850e-47 |
| Msa0201390 | Msa0858360 | 0.801500 | 8.744464e-49 | -8.615850e-47 |
| Msa0201390 | Msa0883350 | 0.821402 | 4.116043e-53 | -8.615850e-47 |
| Msa0201390 | Msa0886660 | 0.827656 | 1.387196e-54 | -8.615850e-47 |
| Msa0201390 | Msa0912470 | 0.800409 | 1.460791e-48 | -8.615850e-47 |
| Msa0201390 | Msa0946680 | 0.814678 | 1.362958e-51 | -8.615850e-47 |
| Msa0201390 | Msa1006460 | 0.812447 | 4.219336e-51 | -8.615850e-47 |
| Msa0201390 | Msa1006600 | 0.803190 | 3.923162e-49 | -8.615850e-47 |
| Msa0201390 | Msa1006680 | 0.829419 | 5.201394e-55 | -8.615850e-47 |
| Msa0201390 | Msa1008340 | 0.825596 | 4.299270e-54 | -8.615850e-47 |
| Msa0201390 | Msa1026500 | 0.810961 | 8.886055e-51 | -8.615850e-47 |
| Msa0201390 | Msa1029090 | 0.808583 | 2.884147e-50 | -8.615850e-47 |
| Msa0201390 | Msa1044090 | 0.831569 | 1.549625e-55 | -8.615850e-47 |
| Msa0201390 | Msa1048490 | 0.804586 | 2.011875e-49 | -8.615850e-47 |
| Msa0201390 | Msa1049950 | 0.818126 | 2.305906e-52 | -8.615850e-47 |
| Msa0201390 | Msa1100170 | 0.804424 | 2.175196e-49 | -8.615850e-47 |
| Msa0201390 | Msa1111760 | 0.827354 | 1.638398e-54 | -8.615850e-47 |
| Msa0201390 | Msa1121660 | 0.803050 | 4.194272e-49 | -8.615850e-47 |
| Msa0201390 | Msa1130350 | 0.811816 | 5.793040e-51 | -8.615850e-47 |
| Msa0201390 | Msa1139240 | 0.833363 | 5.569039e-56 | -8.615850e-47 |
| Msa0201390 | Msa1154070 | 0.821485 | 3.938466e-53 | -8.615850e-47 |
| Msa0201390 | Msa1156180 | 0.814720 | 1.334461e-51 | -8.615850e-47 |
| Msa0201390 | Msa1249940 | 0.809872 | 1.526411e-50 | -8.615850e-47 |
| Msa0201390 | Msa1279850 | 0.811471 | 6.887078e-51 | -8.615850e-47 |
| Msa0201390 | Msa1279860 | 0.801909 | 7.208096e-49 | -8.615850e-47 |
| Msa0201390 | Msa1289130 | 0.807662 | 4.530631e-50 | -8.615850e-47 |
| Msa0201390 | Msa1381940 | 0.807109 | 5.934840e-50 | -8.615850e-47 |
| Msa0201390 | Msa1406600 | 0.803929 | 2.757538e-49 | -8.615850e-47 |
| Msa0201390 | Msa1441200 | 0.818983 | 1.473926e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201390 | MtrunA17_Chr2g0297711 | 89.583 | 576 | 25 | 1 | 1 | 576 | 1 | 541 | 0.0 | 1051 |
| Msa0201390 | MtrunA17_Chr2g0297701 | 51.123 | 579 | 263 | 5 | 13 | 575 | 9 | 583 | 0.0 | 582 |
| Msa0201390 | MtrunA17_Chr2g0297691 | 48.511 | 571 | 267 | 8 | 30 | 575 | 137 | 705 | 0.0 | 543 |
| Msa0201390 | MtrunA17_Chr2g0297681 | 47.359 | 568 | 272 | 6 | 33 | 575 | 138 | 703 | 0.0 | 536 |
| Msa0201390 | MtrunA17_Chr2g0297651 | 45.347 | 591 | 297 | 6 | 9 | 575 | 116 | 704 | 2.17e-176 | 516 |
| Msa0201390 | MtrunA17_Chr2g0297481 | 47.154 | 492 | 233 | 6 | 104 | 575 | 1 | 485 | 8.76e-153 | 447 |
| Msa0201390 | MtrunA17_Chr2g0297491 | 49.618 | 393 | 177 | 6 | 202 | 575 | 1 | 391 | 1.27e-124 | 372 |
| Msa0201390 | MtrunA17_Chr1g0211531 | 28.327 | 526 | 342 | 11 | 46 | 554 | 20 | 527 | 5.30e-58 | 203 |
| Msa0201390 | MtrunA17_Chr5g0410201 | 35.494 | 324 | 202 | 5 | 240 | 561 | 7 | 325 | 1.65e-57 | 196 |
| Msa0201390 | MtrunA17_Chr1g0211541 | 28.963 | 511 | 342 | 8 | 55 | 555 | 3 | 502 | 6.16e-56 | 197 |
| Msa0201390 | MtrunA17_Chr5g0410271 | 39.516 | 248 | 148 | 1 | 273 | 518 | 36 | 283 | 1.93e-55 | 190 |
| Msa0201390 | MtrunA17_Chr5g0410171 | 36.177 | 293 | 179 | 3 | 273 | 561 | 443 | 731 | 5.67e-54 | 195 |
| Msa0201390 | MtrunA17_Chr3g0100301 | 30.930 | 430 | 257 | 11 | 136 | 558 | 11 | 407 | 2.84e-53 | 187 |
| Msa0201390 | MtrunA17_Chr2g0297631 | 45.918 | 196 | 104 | 1 | 33 | 226 | 148 | 343 | 3.19e-52 | 192 |
| Msa0201390 | MtrunA17_Chr5g0443001 | 34.797 | 296 | 190 | 2 | 267 | 562 | 310 | 602 | 1.21e-49 | 181 |
| Msa0201390 | MtrunA17_Chr5g0410371 | 35.294 | 289 | 183 | 2 | 277 | 562 | 8 | 295 | 1.35e-49 | 174 |
| Msa0201390 | MtrunA17_Chr5g0410341 | 35.154 | 293 | 186 | 3 | 271 | 561 | 453 | 743 | 1.94e-49 | 182 |
| Msa0201390 | MtrunA17_Chr5g0410341 | 27.727 | 220 | 134 | 8 | 45 | 241 | 117 | 334 | 3.15e-12 | 69.7 |
| Msa0201390 | MtrunA17_Chr5g0410461 | 35.932 | 295 | 182 | 3 | 273 | 562 | 171 | 463 | 2.45e-49 | 177 |
| Msa0201390 | MtrunA17_Chr6g0456141 | 33.030 | 330 | 211 | 6 | 241 | 566 | 66 | 389 | 4.51e-48 | 172 |
| Msa0201390 | MtrunA17_Chr3g0100741 | 25.135 | 557 | 361 | 7 | 49 | 552 | 34 | 587 | 4.09e-46 | 171 |
| Msa0201390 | MtrunA17_Chr6g0456101 | 33.048 | 351 | 215 | 6 | 240 | 575 | 405 | 750 | 8.60e-46 | 172 |
| Msa0201390 | MtrunA17_Chr6g0457101 | 34.539 | 304 | 188 | 5 | 273 | 573 | 400 | 695 | 7.75e-45 | 169 |
| Msa0201390 | MtrunA17_Chr2g0297531 | 39.901 | 203 | 104 | 4 | 104 | 288 | 1 | 203 | 4.10e-42 | 150 |
| Msa0201390 | MtrunA17_Chr5g0410581 | 35.246 | 244 | 157 | 1 | 273 | 515 | 502 | 745 | 5.18e-42 | 161 |
| Msa0201390 | MtrunA17_Chr3g0096941 | 25.143 | 525 | 337 | 7 | 49 | 519 | 34 | 556 | 3.04e-41 | 157 |
| Msa0201390 | MtrunA17_Chr2g0286601 | 31.488 | 289 | 188 | 4 | 273 | 557 | 393 | 675 | 1.30e-37 | 148 |
| Msa0201390 | MtrunA17_Chr2g0286601 | 31.746 | 189 | 118 | 3 | 51 | 229 | 9 | 196 | 6.57e-17 | 84.3 |
| Msa0201390 | MtrunA17_Chr2g0286551 | 30.903 | 288 | 190 | 4 | 273 | 557 | 373 | 654 | 1.15e-36 | 145 |
| Msa0201390 | MtrunA17_Chr2g0286551 | 32.804 | 189 | 116 | 3 | 51 | 229 | 9 | 196 | 1.03e-17 | 87.0 |
| Msa0201390 | MtrunA17_Chr3g0098481 | 29.710 | 276 | 188 | 4 | 292 | 562 | 58 | 332 | 1.94e-34 | 133 |
| Msa0201390 | MtrunA17_Chr2g0284501 | 30.970 | 268 | 173 | 4 | 290 | 554 | 389 | 647 | 6.22e-32 | 130 |
| Msa0201390 | MtrunA17_Chr3g0102001 | 29.773 | 309 | 206 | 4 | 259 | 560 | 430 | 734 | 8.55e-31 | 127 |
| Msa0201390 | MtrunA17_Chr3g0098531 | 28.309 | 272 | 190 | 4 | 292 | 559 | 11 | 281 | 4.87e-30 | 119 |
| Msa0201390 | MtrunA17_Chr5g0410191 | 37.162 | 148 | 93 | 0 | 371 | 518 | 2 | 149 | 7.06e-30 | 116 |
| Msa0201390 | MtrunA17_Chr5g0439061 | 30.690 | 290 | 195 | 3 | 273 | 558 | 440 | 727 | 1.68e-29 | 124 |
| Msa0201390 | MtrunA17_Chr5g0410451 | 37.500 | 152 | 95 | 0 | 364 | 515 | 34 | 185 | 1.48e-28 | 114 |
| Msa0201390 | MtrunA17_Chr2g0297621 | 50.862 | 116 | 55 | 2 | 240 | 353 | 7 | 122 | 2.27e-28 | 109 |
| Msa0201390 | MtrunA17_Chr5g0410541 | 37.662 | 154 | 93 | 2 | 362 | 515 | 16 | 166 | 6.54e-26 | 105 |
| Msa0201390 | MtrunA17_Chr2g0284541 | 28.620 | 297 | 201 | 5 | 258 | 554 | 344 | 629 | 2.18e-25 | 110 |
| Msa0201390 | MtrunA17_Chr2g0286561 | 29.798 | 198 | 136 | 2 | 361 | 557 | 5 | 200 | 4.68e-25 | 103 |
| Msa0201390 | MtrunA17_Chr5g0410511 | 32.620 | 187 | 120 | 3 | 371 | 551 | 2 | 188 | 1.79e-24 | 101 |
| Msa0201390 | MtrunA17_Chr3g0098301 | 27.106 | 273 | 189 | 6 | 292 | 557 | 124 | 393 | 2.03e-23 | 102 |
| Msa0201390 | MtrunA17_Chr2g0297521 | 51.163 | 86 | 41 | 1 | 363 | 448 | 1 | 85 | 2.88e-22 | 91.3 |
| Msa0201390 | MtrunA17_Chr2g0297611 | 48.780 | 82 | 41 | 1 | 377 | 458 | 1 | 81 | 6.95e-22 | 90.1 |
| Msa0201390 | MtrunA17_Chr1g0211511 | 27.815 | 302 | 201 | 10 | 260 | 551 | 4 | 298 | 2.96e-20 | 92.4 |
| Msa0201390 | MtrunA17_Chr2g0297501 | 41.935 | 93 | 54 | 0 | 104 | 196 | 1 | 93 | 4.31e-20 | 85.5 |
| Msa0201390 | MtrunA17_Chr5g0439081 | 29.586 | 169 | 116 | 2 | 386 | 554 | 31 | 196 | 2.08e-19 | 87.4 |
| Msa0201390 | MtrunA17_Chr5g0410181 | 40.000 | 90 | 54 | 0 | 429 | 518 | 1 | 90 | 1.22e-17 | 79.7 |
| Msa0201390 | MtrunA17_Chr5g0439051 | 32.768 | 177 | 117 | 2 | 384 | 560 | 33 | 207 | 2.70e-17 | 81.3 |
| Msa0201390 | MtrunA17_Chr2g0286571 | 29.064 | 203 | 133 | 3 | 51 | 243 | 9 | 210 | 3.49e-15 | 77.0 |
| Msa0201390 | MtrunA17_Chr4g0030551 | 22.708 | 480 | 282 | 13 | 15 | 466 | 3 | 421 | 1.40e-14 | 76.6 |
| Msa0201390 | MtrunA17_Chr5g0410291 | 30.818 | 159 | 97 | 6 | 84 | 229 | 17 | 175 | 1.68e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201390 | AT3G18670.1 | 32.545 | 550 | 335 | 12 | 51 | 572 | 53 | 594 | 8.83e-92 | 294 |
| Msa0201390 | AT5G35810.1 | 40.000 | 340 | 196 | 4 | 242 | 575 | 8 | 345 | 1.93e-75 | 244 |
| Msa0201390 | AT3G18670.2 | 37.500 | 304 | 185 | 5 | 271 | 572 | 349 | 649 | 8.08e-63 | 219 |
| Msa0201390 | AT3G18670.2 | 30.526 | 190 | 120 | 3 | 51 | 228 | 53 | 242 | 5.37e-19 | 91.3 |
| Msa0201390 | AT5G04690.1 | 31.158 | 475 | 297 | 9 | 113 | 562 | 143 | 612 | 2.47e-60 | 211 |
| Msa0201390 | AT5G04730.1 | 36.601 | 306 | 191 | 2 | 271 | 575 | 299 | 602 | 8.93e-54 | 193 |
| Msa0201390 | AT5G04680.2 | 28.709 | 519 | 299 | 12 | 113 | 562 | 12 | 528 | 2.04e-53 | 191 |
| Msa0201390 | AT5G04680.4 | 28.709 | 519 | 299 | 12 | 113 | 562 | 135 | 651 | 1.70e-52 | 190 |
| Msa0201390 | AT5G04680.3 | 28.295 | 516 | 291 | 12 | 113 | 562 | 135 | 637 | 3.30e-51 | 187 |
| Msa0201390 | AT5G04700.1 | 35.274 | 292 | 186 | 3 | 273 | 562 | 366 | 656 | 1.24e-50 | 185 |
| Msa0201390 | AT5G04690.3 | 32.990 | 291 | 189 | 4 | 273 | 562 | 347 | 632 | 6.88e-46 | 172 |
| Msa0201390 | AT5G04690.2 | 32.990 | 291 | 189 | 4 | 273 | 562 | 361 | 646 | 7.81e-46 | 172 |
| Msa0201390 | AT5G04680.1 | 32.226 | 301 | 191 | 4 | 273 | 562 | 382 | 680 | 3.53e-43 | 164 |
| Msa0201390 | AT3G54065.1 | 41.704 | 223 | 123 | 3 | 357 | 573 | 8 | 229 | 5.94e-43 | 154 |
| Msa0201390 | AT5G35830.1 | 37.705 | 183 | 109 | 2 | 19 | 196 | 55 | 237 | 4.08e-29 | 117 |
| Msa0201390 | AT3G54070.1 | 35.567 | 194 | 114 | 4 | 51 | 235 | 54 | 245 | 7.98e-26 | 107 |
| Msa0201390 | AT5G54710.1 | 24.085 | 519 | 309 | 20 | 78 | 543 | 64 | 550 | 2.13e-14 | 76.6 |
| Msa0201390 | AT5G54710.2 | 24.085 | 519 | 309 | 20 | 78 | 543 | 109 | 595 | 2.54e-14 | 76.6 |
| Msa0201390 | AT1G34050.1 | 24.951 | 513 | 302 | 22 | 83 | 551 | 55 | 528 | 4.81e-14 | 75.5 |
| Msa0201390 | AT2G24600.3 | 24.521 | 522 | 316 | 19 | 84 | 549 | 39 | 538 | 3.92e-11 | 66.2 |
| Msa0201390 | AT2G24600.4 | 24.521 | 522 | 316 | 19 | 84 | 549 | 39 | 538 | 3.92e-11 | 66.2 |
Find 86 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTTGCATTTGGGTTT+TGG | 0.168744 | 2_1:+22783645 | Msa0201390:five_prime_UTR |
| TGGAACTTGTTAGATGTCTT+TGG | 0.191053 | 2_1:+22788488 | Msa0201390:CDS |
| AATTTCTTCAGGGAAATATT+TGG | 0.196684 | 2_1:+22786045 | Msa0201390:intron |
| GAAGAGCACAAGTCCATTTC+TGG | 0.204770 | 2_1:+22788468 | Msa0201390:CDS |
| GAAGAGCTGCTCCTGAAATT+AGG | 0.245053 | 2_1:-22788831 | None:intergenic |
| GGAACTTGTTAGATGTCTTT+GGG | 0.248529 | 2_1:+22788489 | Msa0201390:CDS |
| AGGAATGACCCCTCTTACTA+TGG | 0.258797 | 2_1:+22786381 | Msa0201390:CDS |
| GGTCTGAACCTGATTTAATA+AGG | 0.275713 | 2_1:+22788629 | Msa0201390:CDS |
| TGCAAGCTTCCTTTGCATTT+GGG | 0.277855 | 2_1:+22783639 | Msa0201390:five_prime_UTR |
| ATTACTTGACTCAAAAGATT+TGG | 0.283267 | 2_1:+22786240 | Msa0201390:CDS |
| TCTCAGCTTAACCTAATTTC+AGG | 0.291297 | 2_1:+22788820 | Msa0201390:CDS |
| CTGTCTCCTTGTTCATATTT+CGG | 0.292695 | 2_1:-22786800 | None:intergenic |
| TTGCAAGCTTCCTTTGCATT+TGG | 0.297900 | 2_1:+22783638 | Msa0201390:five_prime_UTR |
| TGGAAATCAGTGTTGAAATT+AGG | 0.300644 | 2_1:-22789593 | None:intergenic |
| TTGTGCTTAGCTGCTGTATC+TGG | 0.304673 | 2_1:+22786292 | Msa0201390:CDS |
| TTGGAACTACAAAACAATAA+AGG | 0.331416 | 2_1:+22786259 | Msa0201390:CDS |
| TCAATATAATAACAATTTGT+AGG | 0.331722 | 2_1:-22786318 | None:intergenic |
| AAATGACACATGAAATACTA+TGG | 0.337385 | 2_1:+22788854 | Msa0201390:CDS |
| TCCACATCCCTTATTAAATC+AGG | 0.349899 | 2_1:-22788637 | None:intergenic |
| GCTGCAATAACAAAGGATTA+TGG | 0.370183 | 2_1:+22786157 | Msa0201390:CDS |
| TTTAGTCTAATACATGAGTT+AGG | 0.380843 | 2_1:+22788715 | Msa0201390:CDS |
| ACATTTGATGCTACAAAAGT+TGG | 0.388589 | 2_1:+22788577 | Msa0201390:CDS |
| TGCATCAACAATGATTTGTA+TGG | 0.395835 | 2_1:+22786499 | Msa0201390:CDS |
| ATTTCCATGGTTTGATGTCA+TGG | 0.396226 | 2_1:+22789904 | Msa0201390:CDS |
| CCTTTGTTATTGCAGCGTTT+AGG | 0.409812 | 2_1:-22786150 | None:intergenic |
| GAGGAGTAGGGCATGATAAT+TGG | 0.411921 | 2_1:-22785562 | None:intergenic |
| TGGAACTACAAAACAATAAA+GGG | 0.421879 | 2_1:+22786260 | Msa0201390:CDS |
| GTCTCTATCTATCATGCCCT+TGG | 0.431769 | 2_1:-22786119 | None:intergenic |
| CAGCCATACAGTAGACATAT+TGG | 0.433950 | 2_1:+22786444 | Msa0201390:CDS |
| AAAGGAAGCTTGCAATGTTC+AGG | 0.444473 | 2_1:-22783630 | None:intergenic |
| CATCTAACAAGTTCCAGAAA+TGG | 0.446457 | 2_1:-22788481 | None:intergenic |
| TTTCCATGGTTTGATGTCAT+GGG | 0.452042 | 2_1:+22789905 | Msa0201390:CDS |
| TGGGGCATACTTCTCAATCA+TGG | 0.455534 | 2_1:+22788508 | Msa0201390:CDS |
| TCCTCAGCAAATATCTCATC+TGG | 0.460064 | 2_1:-22789510 | None:intergenic |
| AGAACTTTGAATAAAACTAT+AGG | 0.461435 | 2_1:-22789960 | None:intergenic |
| GGAGACAGGCTTACATATCT+TGG | 0.470787 | 2_1:+22786815 | Msa0201390:CDS |
| AAGTTCTTGTATTTCCACTT+TGG | 0.476004 | 2_1:+22789976 | Msa0201390:CDS |
| CAGCAATGTGAAATATGCTT+CGG | 0.476131 | 2_1:-22788669 | None:intergenic |
| CTTCCAATATGTCTACTGTA+TGG | 0.477785 | 2_1:-22786447 | None:intergenic |
| GGGTGTCGATGTTGAGGAGT+AGG | 0.478741 | 2_1:-22785575 | None:intergenic |
| CTTCCTTCCAAGTTGCTATG+TGG | 0.483661 | 2_1:+22789813 | Msa0201390:CDS |
| ATTCCTTGAGCACCTCGAAT+AGG | 0.488372 | 2_1:-22786364 | None:intergenic |
| TTAACTAGCTTGGAAAATAG+AGG | 0.493969 | 2_1:+22790060 | Msa0201390:exon |
| ATTTCAACACTGATTTCCAC+TGG | 0.495892 | 2_1:+22789597 | Msa0201390:CDS |
| AGGTGATTGGATTGCATCCA+AGG | 0.507821 | 2_1:+22786102 | Msa0201390:CDS |
| GTCTGAACCTGATTTAATAA+GGG | 0.510014 | 2_1:+22788630 | Msa0201390:CDS |
| CGAAATATGAACAAGGAGAC+AGG | 0.510389 | 2_1:+22786801 | Msa0201390:CDS |
| CCACCTATTCGAGGTGCTCA+AGG | 0.519230 | 2_1:+22786361 | Msa0201390:CDS |
| TACTAACAAAAGCAGAATCA+TGG | 0.521260 | 2_1:+22789544 | Msa0201390:CDS |
| ACAAATCATTGTTGATGCAA+AGG | 0.521580 | 2_1:-22786495 | None:intergenic |
| GAAATTAGGTTAAGCTGAGA+AGG | 0.526903 | 2_1:-22788817 | None:intergenic |
| ACATATTGGAAGAGGAGGAA+TGG | 0.535583 | 2_1:+22786458 | Msa0201390:CDS |
| AAAACAGTCAACACTGGCAT+TGG | 0.536607 | 2_1:+22786776 | Msa0201390:CDS |
| TACAGTAGACATATTGGAAG+AGG | 0.544937 | 2_1:+22786450 | Msa0201390:CDS |
| AGGGAAGGGTGTCGATGTTG+AGG | 0.546374 | 2_1:-22785581 | None:intergenic |
| AGATTCAATTATAGATCTTG+AGG | 0.546456 | 2_1:+22788747 | Msa0201390:CDS |
| ACATGAAATACTATGGTTTG+AGG | 0.547148 | 2_1:+22788861 | Msa0201390:CDS |
| TCTTGTAATAGGTGAAGGGA+AGG | 0.551117 | 2_1:-22785596 | None:intergenic |
| ACAGCAACATTTAACATACC+TGG | 0.552645 | 2_1:+22789627 | Msa0201390:CDS |
| TGCTATCATCATGCTTGTGA+TGG | 0.554623 | 2_1:-22789856 | None:intergenic |
| ACCTGATTTAATAAGGGATG+TGG | 0.556513 | 2_1:+22788636 | Msa0201390:CDS |
| TTTATCTTGTAATAGGTGAA+GGG | 0.563192 | 2_1:-22785600 | None:intergenic |
| GAACTTGTTAGATGTCTTTG+GGG | 0.568188 | 2_1:+22788490 | Msa0201390:CDS |
| GGTGTCGATGTTGAGGAGTA+GGG | 0.571518 | 2_1:-22785574 | None:intergenic |
| AATCCACATAGCAACTTGGA+AGG | 0.579484 | 2_1:-22789816 | None:intergenic |
| AAAGACTTACTAAGATCAGA+AGG | 0.584008 | 2_1:-22786846 | None:intergenic |
| GGATGTCTACCACCTATTCG+AGG | 0.595323 | 2_1:+22786352 | Msa0201390:CDS |
| CTTCCAAAACCCAAATGCAA+AGG | 0.601966 | 2_1:-22783648 | None:intergenic |
| AGTAGACATATTGGAAGAGG+AGG | 0.604673 | 2_1:+22786453 | Msa0201390:CDS |
| AATCAATCCACATAGCAACT+TGG | 0.607038 | 2_1:-22789820 | None:intergenic |
| TCATGTGCTTGCGATTGTGA+TGG | 0.608430 | 2_1:-22785533 | None:intergenic |
| CCTTGAGCACCTCGAATAGG+TGG | 0.610667 | 2_1:-22786361 | None:intergenic |
| CCTAAACGCTGCAATAACAA+AGG | 0.620975 | 2_1:+22786150 | Msa0201390:CDS |
| CGGATAATATCAGACCAAAG+TGG | 0.625015 | 2_1:-22789990 | None:intergenic |
| TGTTCTAAGAGAGCTTCTTG+AGG | 0.638785 | 2_1:+22783726 | Msa0201390:five_prime_UTR |
| AAAAGCAGCCATAGTAAGAG+GGG | 0.640611 | 2_1:-22786389 | None:intergenic |
| ATTAGGTTAAGCTGAGAAGG+AGG | 0.642478 | 2_1:-22788814 | None:intergenic |
| TGTTGCTGTAAATACTCCAG+TGG | 0.647306 | 2_1:-22789613 | None:intergenic |
| ATCACAATCGCAAGCACATG+AGG | 0.648761 | 2_1:+22785535 | Msa0201390:CDS |
| GGTGATTGGATTGCATCCAA+GGG | 0.650992 | 2_1:+22786103 | Msa0201390:CDS |
| CTTGTAATAGGTGAAGGGAA+GGG | 0.660733 | 2_1:-22785595 | None:intergenic |
| ATGGATGTACAGAAACACAT+AGG | 0.663164 | 2_1:+22788527 | Msa0201390:CDS |
| GCCAGATGAGATATTTGCTG+AGG | 0.667029 | 2_1:+22789509 | Msa0201390:CDS |
| GAACCCATGACATCAAACCA+TGG | 0.676071 | 2_1:-22789908 | None:intergenic |
| ATTGGTCCGAAATATGAACA+AGG | 0.697800 | 2_1:+22786794 | Msa0201390:CDS |
| GCAACATTTAACATACCTGG+TGG | 0.715981 | 2_1:+22789630 | Msa0201390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTATAATTTATATTTT+TGG | + | chr2_1:22784030-22784049 | Msa0201390:intron | 0.0% |
| !!! | TTTATTTTTTTTATAGAATG+AGG | + | chr2_1:22785659-22785678 | Msa0201390:intron | 10.0% |
| !!! | TCAATTTTCAAATATTTTAT+TGG | - | chr2_1:22787012-22787031 | None:intergenic | 10.0% |
| !!! | ATTTTTGTCAAAAAAAAAAA+AGG | + | chr2_1:22787602-22787621 | Msa0201390:intron | 10.0% |
| !!! | AGAAACTATATTAATTTTAT+AGG | + | chr2_1:22788352-22788371 | Msa0201390:intron | 10.0% |
| !! | TGCTTAGAAAAAATATAATT+AGG | - | chr2_1:22783796-22783815 | None:intergenic | 15.0% |
| !! | GATTTAAGAAAAAATATGTT+AGG | - | chr2_1:22783877-22783896 | None:intergenic | 15.0% |
| !! | AACAAATTTATAGATATGAT+TGG | - | chr2_1:22784115-22784134 | None:intergenic | 15.0% |
| !! | GTTTACATCAAAATTAAATA+TGG | - | chr2_1:22784539-22784558 | None:intergenic | 15.0% |
| !! | CAAAAATTTGAAAATATTCT+TGG | + | chr2_1:22784626-22784645 | Msa0201390:intron | 15.0% |
| !!! | GTTTTAAGCATATTTATTAA+AGG | - | chr2_1:22784681-22784700 | None:intergenic | 15.0% |
| !! | ATGCATATTATCATTTAATT+AGG | + | chr2_1:22784795-22784814 | Msa0201390:intron | 15.0% |
| !!! | ATTGATATTTTAAAACTTGA+TGG | - | chr2_1:22785132-22785151 | None:intergenic | 15.0% |
| !!! | AACATTATTATTTCTATCAA+AGG | + | chr2_1:22785163-22785182 | Msa0201390:intron | 15.0% |
| !!! | TAATTTTAGTTACAGAAAAA+TGG | + | chr2_1:22785481-22785500 | Msa0201390:intron | 15.0% |
| !! | CAAAATAAATTATGTATTTC+AGG | + | chr2_1:22785907-22785926 | Msa0201390:intron | 15.0% |
| !! | TCAATATAATAACAATTTGT+AGG | - | chr2_1:22786321-22786340 | None:intergenic | 15.0% |
| !! | AATTATAAGAATTTGATCAA+TGG | - | chr2_1:22786955-22786974 | None:intergenic | 15.0% |
| !!! | GAATGTTTCAATAATTATTT+TGG | + | chr2_1:22787229-22787248 | Msa0201390:intron | 15.0% |
| !!! | TTAAATGCTCTTTATTTTTT+TGG | + | chr2_1:22787304-22787323 | Msa0201390:intron | 15.0% |
| !! | TATTCAATATATCTAAAAAG+TGG | - | chr2_1:22787393-22787412 | None:intergenic | 15.0% |
| !! | TCAAAATAAAAAATAACACT+AGG | - | chr2_1:22789349-22789368 | None:intergenic | 15.0% |
| !! | GTCATAATATAATGTATATA+AGG | - | chr2_1:22789423-22789442 | None:intergenic | 15.0% |
| !!! | TTTTTCTTCTTTATTTCTAT+TGG | - | chr2_1:22789474-22789493 | None:intergenic | 15.0% |
| !! | ATAAAGAAGAAAAATTCTAA+TGG | + | chr2_1:22789480-22789499 | Msa0201390:CDS | 15.0% |
| !! | AAAGAATTAAGAAAGAGAAT+TGG | - | chr2_1:22783838-22783857 | None:intergenic | 20.0% |
| !!! | ATTCTCAGAATTTTTTTTAG+CGG | - | chr2_1:22783927-22783946 | None:intergenic | 20.0% |
| !!! | TTTCAAAATCTTTTTCTTGA+AGG | + | chr2_1:22784164-22784183 | Msa0201390:intron | 20.0% |
| !! | TCTGTATTAATAAATTGGAA+AGG | - | chr2_1:22784269-22784288 | None:intergenic | 20.0% |
| !!! | ATATTTTACAAACTAGTTGT+TGG | + | chr2_1:22784510-22784529 | Msa0201390:intron | 20.0% |
| !!! | GTCATATAGATTTTTTTTAG+AGG | + | chr2_1:22784572-22784591 | Msa0201390:intron | 20.0% |
| !! | GTTTACATGATTAATCTATA+TGG | - | chr2_1:22784601-22784620 | None:intergenic | 20.0% |
| !! | TAAAGGACATCAAATAATTT+GGG | - | chr2_1:22784664-22784683 | None:intergenic | 20.0% |
| !! | TTAAAGGACATCAAATAATT+TGG | - | chr2_1:22784665-22784684 | None:intergenic | 20.0% |
| !! | TGTTTAGGAATAAAATTAAG+AGG | + | chr2_1:22784885-22784904 | Msa0201390:intron | 20.0% |
| !!! | TCAAACTTTTATCTTGTAAT+AGG | - | chr2_1:22785610-22785629 | None:intergenic | 20.0% |
| !!! | ATTTACTTTTAGTCAAAGTA+GGG | - | chr2_1:22785835-22785854 | None:intergenic | 20.0% |
| !!! | AATTTACTTTTAGTCAAAGT+AGG | - | chr2_1:22785836-22785855 | None:intergenic | 20.0% |
| !!! | TTCTAGTGCTTTTTTATATA+GGG | - | chr2_1:22786083-22786102 | None:intergenic | 20.0% |
| !! | ATTATATTGACCAAGAAAAA+TGG | + | chr2_1:22786331-22786350 | Msa0201390:CDS | 20.0% |
| !!! | CTTAGTTTTCTAAATAAACA+TGG | - | chr2_1:22786881-22786900 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTATGCCTTCAA+TGG | + | chr2_1:22786969-22786988 | Msa0201390:intron | 20.0% |
| !!! | TAATTTTTTATGCCTTCAAT+GGG | + | chr2_1:22786970-22786989 | Msa0201390:intron | 20.0% |
| !!! | TGGTTTTTGTCAAAAAAAAA+AGG | - | chr2_1:22787178-22787197 | None:intergenic | 20.0% |
| !! | TATTCAATGTATCTAAAAAG+TGG | + | chr2_1:22787454-22787473 | Msa0201390:intron | 20.0% |
| !!! | GAATGTTTCAATCATTATTT+TGG | - | chr2_1:22787549-22787568 | None:intergenic | 20.0% |
| !! | TCAAAAAAAAAAAAGGTTTG+AGG | + | chr2_1:22787609-22787628 | Msa0201390:intron | 20.0% |
| !!! | TTCTAAAATTCGATTTCATT+TGG | + | chr2_1:22788025-22788044 | Msa0201390:intron | 20.0% |
| !!! | TCACAAAAAATTATTTTCCT+TGG | - | chr2_1:22788224-22788243 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAAATGACCATTA+TGG | - | chr2_1:22788253-22788272 | None:intergenic | 20.0% |
| !!! | AAAACCTACTGTTTTTTTTT+GGG | + | chr2_1:22788327-22788346 | Msa0201390:intron | 20.0% |
| !! | TTATACATATGACATATGTA+TGG | - | chr2_1:22788906-22788925 | None:intergenic | 20.0% |
| !!! | TTTTATGTGTAAGCATTAAT+CGG | + | chr2_1:22789081-22789100 | Msa0201390:intron | 20.0% |
| !! | AATTAGTAATTAACTGAGTT+GGG | - | chr2_1:22789167-22789186 | None:intergenic | 20.0% |
| !! | AAATTAGTAATTAACTGAGT+TGG | - | chr2_1:22789168-22789187 | None:intergenic | 20.0% |
| !! | ACTCAGTATATTACTTTATT+AGG | + | chr2_1:22789323-22789342 | Msa0201390:intron | 20.0% |
| !!! | AGGTCTTAAAACAAATTTTA+TGG | - | chr2_1:22789381-22789400 | None:intergenic | 20.0% |
| !! | AATATAATGTATATAAGGAC+CGG | - | chr2_1:22789418-22789437 | None:intergenic | 20.0% |
| !! | ACATTATATTATGACATTGT+AGG | + | chr2_1:22789428-22789447 | Msa0201390:intron | 20.0% |
| !!! | TTTTTCATTACATATTTCCA+TGG | + | chr2_1:22789891-22789910 | Msa0201390:CDS | 20.0% |
| !! | GCAAAAACAGAAATAAAATA+TGG | - | chr2_1:22789933-22789952 | None:intergenic | 20.0% |
| !! | AGAACTTTGAATAAAACTAT+AGG | - | chr2_1:22789963-22789982 | None:intergenic | 20.0% |
| !! | ACATACAAAAATAAGAAGAT+CGG | - | chr2_1:22790013-22790032 | None:intergenic | 20.0% |
| !!! | TTCTCAGAATTTTTTTTAGC+GGG | - | chr2_1:22783926-22783945 | None:intergenic | 25.0% |
| ! | AAGCATGAATTAAACTCAAA+CGG | - | chr2_1:22783950-22783969 | None:intergenic | 25.0% |
| ! | TAAGTTTCAAAATAAACACG+TGG | + | chr2_1:22783996-22784015 | Msa0201390:intron | 25.0% |
| ! | TGTAAAAGAATAGGAAGAAA+AGG | - | chr2_1:22784198-22784217 | None:intergenic | 25.0% |
| ! | AAGAACTTGTGTAAAAGAAT+AGG | - | chr2_1:22784207-22784226 | None:intergenic | 25.0% |
| ! | CGCTATCTGTATTAATAAAT+TGG | - | chr2_1:22784274-22784293 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTCAAGTAACCTA+GGG | + | chr2_1:22784354-22784373 | Msa0201390:intron | 25.0% |
| ! | AAGTCAATAGTACATTATGT+GGG | - | chr2_1:22784821-22784840 | None:intergenic | 25.0% |
| ! | AAAGTCAATAGTACATTATG+TGG | - | chr2_1:22784822-22784841 | None:intergenic | 25.0% |
| !! | TTTTAGTCAACCATAAATCT+TGG | + | chr2_1:22784839-22784858 | Msa0201390:intron | 25.0% |
| ! | ATACCTTTAACCAAGATTTA+TGG | - | chr2_1:22784852-22784871 | None:intergenic | 25.0% |
| ! | ATAAATCTTGGTTAAAGGTA+TGG | + | chr2_1:22784851-22784870 | Msa0201390:intron | 25.0% |
| !! | ATAAAATTAAGAGGTGTGTA+AGG | + | chr2_1:22784894-22784913 | Msa0201390:intron | 25.0% |
| !! | TAAAATTAAGAGGTGTGTAA+GGG | + | chr2_1:22784895-22784914 | Msa0201390:intron | 25.0% |
| !!! | GTACTTTTTGTTAAGTCAAT+TGG | + | chr2_1:22784929-22784948 | Msa0201390:intron | 25.0% |
| ! | TTGTATCAACTTGCAATAAT+AGG | - | chr2_1:22785058-22785077 | None:intergenic | 25.0% |
| ! | ATTAGTAATAGAAAGTAGCT+AGG | + | chr2_1:22785239-22785258 | Msa0201390:intron | 25.0% |
| ! | TGAAATAATGAAACGATTGA+AGG | + | chr2_1:22785294-22785313 | Msa0201390:intron | 25.0% |
| ! | GAAATAATGAAACGATTGAA+GGG | + | chr2_1:22785295-22785314 | Msa0201390:intron | 25.0% |
| ! | ATCTCTCAAAAATAACTCAA+AGG | - | chr2_1:22785425-22785444 | None:intergenic | 25.0% |
| ! | TTTATCTTGTAATAGGTGAA+GGG | - | chr2_1:22785603-22785622 | None:intergenic | 25.0% |
| !! | TTTTATCTTGTAATAGGTGA+AGG | - | chr2_1:22785604-22785623 | None:intergenic | 25.0% |
| !! | AGTTTCATGAGTGATTTTAT+TGG | + | chr2_1:22785786-22785805 | Msa0201390:intron | 25.0% |
| ! | AAAGTAAATTGAACGTAAAG+TGG | + | chr2_1:22785846-22785865 | Msa0201390:intron | 25.0% |
| ! | TCAACTTTACTTCTACAAAA+TGG | + | chr2_1:22785932-22785951 | Msa0201390:intron | 25.0% |
| !!! | GGGTAATGTGTTTTTTTTAA+AGG | - | chr2_1:22785958-22785977 | None:intergenic | 25.0% |
| !! | TGTTTCGTTTCATTTTGTAT+GGG | - | chr2_1:22785978-22785997 | None:intergenic | 25.0% |
| !! | ATGTTTCGTTTCATTTTGTA+TGG | - | chr2_1:22785979-22785998 | None:intergenic | 25.0% |
| !!! | AACTCTCTTTTAATTTCTTC+AGG | + | chr2_1:22786034-22786053 | Msa0201390:intron | 25.0% |
| !!! | ACTCTCTTTTAATTTCTTCA+GGG | + | chr2_1:22786035-22786054 | Msa0201390:intron | 25.0% |
| ! | AATTTCTTCAGGGAAATATT+TGG | + | chr2_1:22786045-22786064 | Msa0201390:intron | 25.0% |
| !!! | TCTAGTGCTTTTTTATATAG+GGG | - | chr2_1:22786082-22786101 | None:intergenic | 25.0% |
| !!! | CTTCTAGTGCTTTTTTATAT+AGG | - | chr2_1:22786084-22786103 | None:intergenic | 25.0% |
| !!! | CTATATAAAAAAGCACTAGA+AGG | + | chr2_1:22786082-22786101 | Msa0201390:CDS | 25.0% |
| !! | AAATCATACTCATTTTGTAG+AGG | + | chr2_1:22786207-22786226 | Msa0201390:CDS | 25.0% |
| ! | ATTACTTGACTCAAAAGATT+TGG | + | chr2_1:22786240-22786259 | Msa0201390:CDS | 25.0% |
| ! | TTGGAACTACAAAACAATAA+AGG | + | chr2_1:22786259-22786278 | Msa0201390:CDS | 25.0% |
| ! | TGGAACTACAAAACAATAAA+GGG | + | chr2_1:22786260-22786279 | Msa0201390:CDS | 25.0% |
| ! | GGGAGGAATAATAATAATTA+TGG | - | chr2_1:22786690-22786709 | None:intergenic | 25.0% |
| ! | AAACATATTTAACCCATTGA+AGG | - | chr2_1:22786985-22787004 | None:intergenic | 25.0% |
| !! | AAAAAGGTTTGAATTTTCCT+CGG | - | chr2_1:22787162-22787181 | None:intergenic | 25.0% |
| !!! | ACTCATTGAAATGTTTTTTG+AGG | + | chr2_1:22787279-22787298 | Msa0201390:intron | 25.0% |
| ! | CAGAATTGTTAGTAATGATT+CGG | - | chr2_1:22787923-22787942 | None:intergenic | 25.0% |
| ! | TAGTTCATGATTTATCAGTA+TGG | + | chr2_1:22787972-22787991 | Msa0201390:intron | 25.0% |
| !!! | GAAAACCTACTGTTTTTTTT+TGG | + | chr2_1:22788326-22788345 | Msa0201390:intron | 25.0% |
| !!! | GCATCAAATGTTATTTTTGA+CGG | - | chr2_1:22788568-22788587 | None:intergenic | 25.0% |
| ! | TTTAGTCTAATACATGAGTT+AGG | + | chr2_1:22788715-22788734 | Msa0201390:CDS | 25.0% |
| ! | AGATTCAATTATAGATCTTG+AGG | + | chr2_1:22788747-22788766 | Msa0201390:CDS | 25.0% |
| ! | AAATGACACATGAAATACTA+TGG | + | chr2_1:22788854-22788873 | Msa0201390:CDS | 25.0% |
| ! | AGATAATATATAGGAGCAAT+TGG | + | chr2_1:22789004-22789023 | Msa0201390:intron | 25.0% |
| ! | TTTATGTGTAAGCATTAATC+GGG | + | chr2_1:22789082-22789101 | Msa0201390:intron | 25.0% |
| !! | TTTTTCGTTAAGTAGTTTAG+TGG | + | chr2_1:22789191-22789210 | Msa0201390:intron | 25.0% |
| ! | AGATTCACACAATTTAAATG+TGG | + | chr2_1:22789217-22789236 | Msa0201390:intron | 25.0% |
| !!! | GCTTGTTTTTGTAAATAGTT+TGG | - | chr2_1:22789678-22789697 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTTGGTTGAAATA+GGG | - | chr2_1:22790036-22790055 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCTTGGTTGAAAT+AGG | - | chr2_1:22790037-22790056 | None:intergenic | 25.0% |
| !!! | TAGTTAAGCATGTTTTTTCT+TGG | - | chr2_1:22790047-22790066 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGTCAAGTAACCT+AGG | + | chr2_1:22784353-22784372 | Msa0201390:intron | 30.0% |
| AAAAGTGAATTCTAAACCCT+AGG | - | chr2_1:22784373-22784392 | None:intergenic | 30.0% | |
| !! | AGGGTTTAGAATTCACTTTT+AGG | + | chr2_1:22784373-22784392 | Msa0201390:intron | 30.0% |
| !! | GGGTTTAGAATTCACTTTTA+GGG | + | chr2_1:22784374-22784393 | Msa0201390:intron | 30.0% |
| ATTGTAATATATAGCAGTCG+AGG | - | chr2_1:22784428-22784447 | None:intergenic | 30.0% | |
| CAACCATAAATCTTGGTTAA+AGG | + | chr2_1:22784846-22784865 | Msa0201390:intron | 30.0% | |
| !! | ATGGATTGGAAAAACTGTTT+AGG | + | chr2_1:22784870-22784889 | Msa0201390:intron | 30.0% |
| TGATGGAAAACTGATATCAA+AGG | - | chr2_1:22785115-22785134 | None:intergenic | 30.0% | |
| TAGTAGATACACCTTTAGAT+CGG | - | chr2_1:22785332-22785351 | None:intergenic | 30.0% | |
| TAGTTACAGAAAAATGGAGA+TGG | + | chr2_1:22785487-22785506 | Msa0201390:intron | 30.0% | |
| ACAAATCATTGTTGATGCAA+AGG | - | chr2_1:22786498-22786517 | None:intergenic | 30.0% | |
| ! | TGCATCAACAATGATTTGTA+TGG | + | chr2_1:22786499-22786518 | Msa0201390:CDS | 30.0% |
| TCCATAATTATAACCCACTT+GGG | + | chr2_1:22786537-22786556 | Msa0201390:intron | 30.0% | |
| AAAATTTCCCAAAAACTGCT+AGG | - | chr2_1:22786730-22786749 | None:intergenic | 30.0% | |
| AAAGACTTACTAAGATCAGA+AGG | - | chr2_1:22786849-22786868 | None:intergenic | 30.0% | |
| ! | TTAATTGCAGAAGTTTTCCT+CGG | - | chr2_1:22787136-22787155 | None:intergenic | 30.0% |
| TTATTAAGATATACTCCCTC+CGG | + | chr2_1:22787347-22787366 | Msa0201390:intron | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+CGG | - | chr2_1:22787369-22787388 | None:intergenic | 30.0% |
| TTGCTTATAATAGTGACTAG+AGG | + | chr2_1:22787481-22787500 | Msa0201390:intron | 30.0% | |
| TGCTTATAATAGTGACTAGA+GGG | + | chr2_1:22787482-22787501 | Msa0201390:intron | 30.0% | |
| !! | CCGTATCAAATTTTAGAAGA+GGG | - | chr2_1:22787821-22787840 | None:intergenic | 30.0% |
| !! | CCCTCTTCTAAAATTTGATA+CGG | + | chr2_1:22787818-22787837 | Msa0201390:intron | 30.0% |
| !! | ACCGTATCAAATTTTAGAAG+AGG | - | chr2_1:22787822-22787841 | None:intergenic | 30.0% |
| CGAATCATTACTAACAATTC+TGG | + | chr2_1:22787921-22787940 | Msa0201390:intron | 30.0% | |
| TGAATTGAAACAATCCAGTT+CGG | + | chr2_1:22787947-22787966 | Msa0201390:intron | 30.0% | |
| CAGTATGGTTCAAAACAATT+CGG | + | chr2_1:22787987-22788006 | Msa0201390:intron | 30.0% | |
| ! | CAGTTCAGTTTGAAATAGTT+TGG | + | chr2_1:22788088-22788107 | Msa0201390:intron | 30.0% |
| !!! | TGGTTTGTTTTGAAACAGTT+CGG | + | chr2_1:22788108-22788127 | Msa0201390:intron | 30.0% |
| !! | TTGGTATTGACTAAGAACTT+GGG | - | chr2_1:22788205-22788224 | None:intergenic | 30.0% |
| AAAAATGACCATTATGGTGT+TGG | - | chr2_1:22788247-22788266 | None:intergenic | 30.0% | |
| AAGAGGGAAGTTATAATATG+TGG | - | chr2_1:22788395-22788414 | None:intergenic | 30.0% | |
| ACATATTATAACTTCCCTCT+TGG | + | chr2_1:22788394-22788413 | Msa0201390:intron | 30.0% | |
| TGAAATATTCATGACCAAGA+GGG | - | chr2_1:22788411-22788430 | None:intergenic | 30.0% | |
| TTGAAATATTCATGACCAAG+AGG | - | chr2_1:22788412-22788431 | None:intergenic | 30.0% | |
| ACCAATCAAATTATGTGTGT+AGG | + | chr2_1:22788442-22788461 | Msa0201390:intron | 30.0% | |
| ACATTTGATGCTACAAAAGT+TGG | + | chr2_1:22788577-22788596 | Msa0201390:CDS | 30.0% | |
| ! | AGTTGGAAATTTTCACTTTG+TGG | + | chr2_1:22788594-22788613 | Msa0201390:CDS | 30.0% |
| GTCTGAACCTGATTTAATAA+GGG | + | chr2_1:22788630-22788649 | Msa0201390:CDS | 30.0% | |
| ACATGAAATACTATGGTTTG+AGG | + | chr2_1:22788861-22788880 | Msa0201390:CDS | 30.0% | |
| CATATGTATGGTGAAATAGT+GGG | - | chr2_1:22788894-22788913 | None:intergenic | 30.0% | |
| ACATATGTATGGTGAAATAG+TGG | - | chr2_1:22788895-22788914 | None:intergenic | 30.0% | |
| TTATGTGTAAGCATTAATCG+GGG | + | chr2_1:22789083-22789102 | Msa0201390:intron | 30.0% | |
| TACTAACAAAAGCAGAATCA+TGG | + | chr2_1:22789544-22789563 | Msa0201390:CDS | 30.0% | |
| ! | TGGAAATCAGTGTTGAAATT+AGG | - | chr2_1:22789596-22789615 | None:intergenic | 30.0% |
| AAGTTCTTGTATTTCCACTT+TGG | + | chr2_1:22789976-22789995 | Msa0201390:CDS | 30.0% | |
| AAAAACATGCTTAACTAGCT+TGG | + | chr2_1:22790050-22790069 | Msa0201390:exon | 30.0% | |
| ! | TTAACTAGCTTGGAAAATAG+AGG | + | chr2_1:22790060-22790079 | Msa0201390:exon | 30.0% |
| GAGAAGGATAGTTGTAAGAA+TGG | - | chr2_1:22783902-22783921 | None:intergenic | 35.0% | |
| !!! | ATTTTTTTTAGCGGGAGAGA+AGG | - | chr2_1:22783918-22783937 | None:intergenic | 35.0% |
| !!! | ACTTTTAGGGTGAACAAATG+AGG | + | chr2_1:22784387-22784406 | Msa0201390:intron | 35.0% |
| ! | GGTGAACAAATGAGGTATTT+GGG | + | chr2_1:22784395-22784414 | Msa0201390:intron | 35.0% |
| ! | GTGAACAAATGAGGTATTTG+GGG | + | chr2_1:22784396-22784415 | Msa0201390:intron | 35.0% |
| TAATATATAGCAGTCGAGGT+TGG | - | chr2_1:22784424-22784443 | None:intergenic | 35.0% | |
| ! | TCTTGGTTAAAGGTATGGAT+TGG | + | chr2_1:22784856-22784875 | Msa0201390:intron | 35.0% |
| AAAGCAAATGCTAGCTAACT+AGG | + | chr2_1:22785007-22785026 | Msa0201390:intron | 35.0% | |
| TGGAAAACTGATATCAAAGG+CGG | - | chr2_1:22785112-22785131 | None:intergenic | 35.0% | |
| ATGAACAAACACGAGAAATG+TGG | - | chr2_1:22785197-22785216 | None:intergenic | 35.0% | |
| TAATGAAACGATTGAAGGGA+AGG | + | chr2_1:22785299-22785318 | Msa0201390:intron | 35.0% | |
| AATGAAACGATTGAAGGGAA+GGG | + | chr2_1:22785300-22785319 | Msa0201390:intron | 35.0% | |
| AGTAGATACACCTTTAGATC+GGG | - | chr2_1:22785331-22785350 | None:intergenic | 35.0% | |
| !! | AAAAAGCACTAGAAGGTGAT+TGG | + | chr2_1:22786089-22786108 | Msa0201390:CDS | 35.0% |
| GCTGCAATAACAAAGGATTA+TGG | + | chr2_1:22786157-22786176 | Msa0201390:CDS | 35.0% | |
| ! | TACTCATTTTGTAGAGGAGT+TGG | + | chr2_1:22786213-22786232 | Msa0201390:CDS | 35.0% |
| !! | TGGTAGACATCCATTTTTCT+TGG | - | chr2_1:22786344-22786363 | None:intergenic | 35.0% |
| AAAAAGCAGCCATAGTAAGA+GGG | - | chr2_1:22786393-22786412 | None:intergenic | 35.0% | |
| TAAAAAGCAGCCATAGTAAG+AGG | - | chr2_1:22786394-22786413 | None:intergenic | 35.0% | |
| !!! | CTTACTATGGCTGCTTTTTA+TGG | + | chr2_1:22786394-22786413 | Msa0201390:CDS | 35.0% |
| CTTCCAATATGTCTACTGTA+TGG | - | chr2_1:22786450-22786469 | None:intergenic | 35.0% | |
| TACAGTAGACATATTGGAAG+AGG | + | chr2_1:22786450-22786469 | Msa0201390:CDS | 35.0% | |
| GTCCATAATTATAACCCACT+TGG | + | chr2_1:22786536-22786555 | Msa0201390:intron | 35.0% | |
| !! | ACCCAAGTGGGTTATAATTA+TGG | - | chr2_1:22786541-22786560 | None:intergenic | 35.0% |
| TAATTATAACCCACTTGGGT+TGG | + | chr2_1:22786541-22786560 | Msa0201390:intron | 35.0% | |
| !! | ATTCTCTCTGGAGTCAATTT+AGG | + | chr2_1:22786621-22786640 | Msa0201390:intron | 35.0% |
| ! | AATTCACTCCTAGCAGTTTT+TGG | + | chr2_1:22786719-22786738 | Msa0201390:intron | 35.0% |
| ! | ATTCACTCCTAGCAGTTTTT+GGG | + | chr2_1:22786720-22786739 | Msa0201390:intron | 35.0% |
| GTTACAAAAACAGTCAACAC+TGG | + | chr2_1:22786770-22786789 | Msa0201390:CDS | 35.0% | |
| ATTGGTCCGAAATATGAACA+AGG | + | chr2_1:22786794-22786813 | Msa0201390:CDS | 35.0% | |
| CTGTCTCCTTGTTCATATTT+CGG | - | chr2_1:22786803-22786822 | None:intergenic | 35.0% | |
| TGATGTTGACACATATGCAA+AGG | + | chr2_1:22787029-22787048 | Msa0201390:intron | 35.0% | |
| TTAACTACCGAGGAAAACTT+CGG | - | chr2_1:22787654-22787673 | None:intergenic | 35.0% | |
| ! | TTAACTGCAGAAGTTTTCCT+CGG | + | chr2_1:22787670-22787689 | Msa0201390:intron | 35.0% |
| TAAATTACTCAAATGCCCCT+CGG | - | chr2_1:22787736-22787755 | None:intergenic | 35.0% | |
| !!! | GATACGGTTGTTTTTAGTAG+AGG | + | chr2_1:22787834-22787853 | Msa0201390:intron | 35.0% |
| !!! | CGGTGTTTTTTAGTTTGCTT+CGG | - | chr2_1:22787903-22787922 | None:intergenic | 35.0% |
| AATCATGAACTAAACCGAAC+TGG | - | chr2_1:22787964-22787983 | None:intergenic | 35.0% | |
| TGGTTCAAAACAATTCGGTT+CGG | + | chr2_1:22787992-22788011 | Msa0201390:intron | 35.0% | |
| !! | CTTGGTATTGACTAAGAACT+TGG | - | chr2_1:22788206-22788225 | None:intergenic | 35.0% |
| CAAGTTCTTAGTCAATACCA+AGG | + | chr2_1:22788204-22788223 | Msa0201390:intron | 35.0% | |
| ! | TTTTGTGACCAACACCATAA+TGG | + | chr2_1:22788236-22788255 | Msa0201390:intron | 35.0% |
| CTTGCCCAAAAAAAAACAGT+AGG | - | chr2_1:22788334-22788353 | None:intergenic | 35.0% | |
| GCCTACACACATAATTTGAT+TGG | - | chr2_1:22788446-22788465 | None:intergenic | 35.0% | |
| CATCTAACAAGTTCCAGAAA+TGG | - | chr2_1:22788484-22788503 | None:intergenic | 35.0% | |
| !! | TGGAACTTGTTAGATGTCTT+TGG | + | chr2_1:22788488-22788507 | Msa0201390:CDS | 35.0% |
| !! | GGAACTTGTTAGATGTCTTT+GGG | + | chr2_1:22788489-22788508 | Msa0201390:CDS | 35.0% |
| !! | GAACTTGTTAGATGTCTTTG+GGG | + | chr2_1:22788490-22788509 | Msa0201390:CDS | 35.0% |
| ATGGATGTACAGAAACACAT+AGG | + | chr2_1:22788527-22788546 | Msa0201390:CDS | 35.0% | |
| GGTCTGAACCTGATTTAATA+AGG | + | chr2_1:22788629-22788648 | Msa0201390:CDS | 35.0% | |
| ACCTGATTTAATAAGGGATG+TGG | + | chr2_1:22788636-22788655 | Msa0201390:CDS | 35.0% | |
| TCCACATCCCTTATTAAATC+AGG | - | chr2_1:22788640-22788659 | None:intergenic | 35.0% | |
| CAGCAATGTGAAATATGCTT+CGG | - | chr2_1:22788672-22788691 | None:intergenic | 35.0% | |
| GAAATTAGGTTAAGCTGAGA+AGG | - | chr2_1:22788820-22788839 | None:intergenic | 35.0% | |
| TCTCAGCTTAACCTAATTTC+AGG | + | chr2_1:22788820-22788839 | Msa0201390:CDS | 35.0% | |
| !!! | ATACCCTAGTTTTGGATGTT+TGG | - | chr2_1:22789121-22789140 | None:intergenic | 35.0% |
| ! | GAAGCTTAATACCCTAGTTT+TGG | - | chr2_1:22789129-22789148 | None:intergenic | 35.0% |
| ! | AGGGTATTAAGCTTCAAACT+AGG | + | chr2_1:22789134-22789153 | Msa0201390:intron | 35.0% |
| GGGTATTAAGCTTCAAACTA+GGG | + | chr2_1:22789135-22789154 | Msa0201390:intron | 35.0% | |
| ! | ATAGATCAGTTTTCGAACCT+CGG | - | chr2_1:22789256-22789275 | None:intergenic | 35.0% |
| ACCAATTGAGATGTGCTTAA+AGG | + | chr2_1:22789298-22789317 | Msa0201390:intron | 35.0% | |
| TCCTTTAAGCACATCTCAAT+TGG | - | chr2_1:22789302-22789321 | None:intergenic | 35.0% | |
| !! | ATTTCAACACTGATTTCCAC+TGG | + | chr2_1:22789597-22789616 | Msa0201390:CDS | 35.0% |
| ACAGCAACATTTAACATACC+TGG | + | chr2_1:22789627-22789646 | Msa0201390:CDS | 35.0% | |
| AATCAATCCACATAGCAACT+TGG | - | chr2_1:22789823-22789842 | None:intergenic | 35.0% | |
| ATTTCCATGGTTTGATGTCA+TGG | + | chr2_1:22789904-22789923 | Msa0201390:CDS | 35.0% | |
| TTTCCATGGTTTGATGTCAT+GGG | + | chr2_1:22789905-22789924 | Msa0201390:CDS | 35.0% | |
| TTGCAAGCTTCCTTTGCATT+TGG | + | chr2_1:22783638-22783657 | Msa0201390:five_prime_UTR | 40.0% | |
| TGCAAGCTTCCTTTGCATTT+GGG | + | chr2_1:22783639-22783658 | Msa0201390:five_prime_UTR | 40.0% | |
| !! | CTTCCTTTGCATTTGGGTTT+TGG | + | chr2_1:22783645-22783664 | Msa0201390:five_prime_UTR | 40.0% |
| CTTCCAAAACCCAAATGCAA+AGG | - | chr2_1:22783651-22783670 | None:intergenic | 40.0% | |
| !! | TGTTCTAAGAGAGCTTCTTG+AGG | + | chr2_1:22783726-22783745 | Msa0201390:five_prime_UTR | 40.0% |
| AGCGAGAAAGAACTACAAAG+AGG | - | chr2_1:22784056-22784075 | None:intergenic | 40.0% | |
| AAAGCCAAAACTGCAAACGA+AGG | - | chr2_1:22784086-22784105 | None:intergenic | 40.0% | |
| ! | GGGTGAACAAATGAGGTATT+TGG | + | chr2_1:22784394-22784413 | Msa0201390:intron | 40.0% |
| AAGGGAATATCCCGATCTAA+AGG | + | chr2_1:22785318-22785337 | Msa0201390:intron | 40.0% | |
| CTTGTAATAGGTGAAGGGAA+GGG | - | chr2_1:22785598-22785617 | None:intergenic | 40.0% | |
| TCTTGTAATAGGTGAAGGGA+AGG | - | chr2_1:22785599-22785618 | None:intergenic | 40.0% | |
| !! | CCTTTGTTATTGCAGCGTTT+AGG | - | chr2_1:22786153-22786172 | None:intergenic | 40.0% |
| CCTAAACGCTGCAATAACAA+AGG | + | chr2_1:22786150-22786169 | Msa0201390:CDS | 40.0% | |
| AAAAGCAGCCATAGTAAGAG+GGG | - | chr2_1:22786392-22786411 | None:intergenic | 40.0% | |
| CAGCCATACAGTAGACATAT+TGG | + | chr2_1:22786444-22786463 | Msa0201390:CDS | 40.0% | |
| AGTAGACATATTGGAAGAGG+AGG | + | chr2_1:22786453-22786472 | Msa0201390:CDS | 40.0% | |
| ACATATTGGAAGAGGAGGAA+TGG | + | chr2_1:22786458-22786477 | Msa0201390:CDS | 40.0% | |
| GAATCGAACATGAGATCTTG+AGG | - | chr2_1:22786605-22786624 | None:intergenic | 40.0% | |
| ATCTCATGTTCGATTCTCTC+TGG | + | chr2_1:22786609-22786628 | Msa0201390:intron | 40.0% | |
| !! | TCTCTGGAGTCAATTTAGGT+GGG | + | chr2_1:22786625-22786644 | Msa0201390:intron | 40.0% |
| AGGAGTGAATTTGCAGGTAA+GGG | - | chr2_1:22786710-22786729 | None:intergenic | 40.0% | |
| TAGGAGTGAATTTGCAGGTA+AGG | - | chr2_1:22786711-22786730 | None:intergenic | 40.0% | |
| AAAACAGTCAACACTGGCAT+TGG | + | chr2_1:22786776-22786795 | Msa0201390:CDS | 40.0% | |
| CGAAATATGAACAAGGAGAC+AGG | + | chr2_1:22786801-22786820 | Msa0201390:CDS | 40.0% | |
| CATAATTCGGCAGTTAACTG+CGG | - | chr2_1:22787713-22787732 | None:intergenic | 40.0% | |
| ! | CTGCAGTCGGTTTCATAATT+CGG | - | chr2_1:22787102-22787121 | None:intergenic | 40.0% |
| GGTGGTTAATTAACTGCAGT+CGG | - | chr2_1:22787115-22787134 | None:intergenic | 40.0% | |
| ACTTCTGCAATTAACTACCG+AGG | + | chr2_1:22787142-22787161 | Msa0201390:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr2_1:22787365-22787384 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr2_1:22787366-22787385 | None:intergenic | 40.0% | |
| ! | TTAACTGCCGAAGTTTTCCT+CGG | + | chr2_1:22787644-22787663 | Msa0201390:intron | 40.0% |
| TAACTGCCGAATTATGGAAC+CGG | - | chr2_1:22787709-22787728 | None:intergenic | 40.0% | |
| TGCTGTTGACACATATGCAA+AGG | - | chr2_1:22787773-22787792 | None:intergenic | 40.0% | |
| !!! | ACGGTTGTTTTTAGTAGAGG+TGG | + | chr2_1:22787837-22787856 | Msa0201390:intron | 40.0% |
| !!! | CGGTTGTTTTTAGTAGAGGT+GGG | + | chr2_1:22787838-22787857 | Msa0201390:intron | 40.0% |
| !!! | AGCAGTTCGGTTCAGTTTTT+TGG | - | chr2_1:22787872-22787891 | None:intergenic | 40.0% |
| ! | ACTTTGTGGCTGAACTTTTG+AGG | + | chr2_1:22788608-22788627 | Msa0201390:CDS | 40.0% |
| ATTAGGTTAAGCTGAGAAGG+AGG | - | chr2_1:22788817-22788836 | None:intergenic | 40.0% | |
| ! | ATGTATGGTGAAATAGTGGG+AGG | - | chr2_1:22788891-22788910 | None:intergenic | 40.0% |
| TCCTCAGCAAATATCTCATC+TGG | - | chr2_1:22789513-22789532 | None:intergenic | 40.0% | |
| TGTTGCTGTAAATACTCCAG+TGG | - | chr2_1:22789616-22789635 | None:intergenic | 40.0% | |
| GCAACATTTAACATACCTGG+TGG | + | chr2_1:22789630-22789649 | Msa0201390:CDS | 40.0% | |
| !! | GTATTTTTGTTGAAGCCACC+AGG | - | chr2_1:22789648-22789667 | None:intergenic | 40.0% |
| GGTGGCTTCAACAAAAATAC+AGG | + | chr2_1:22789648-22789667 | Msa0201390:CDS | 40.0% | |
| AATCCACATAGCAACTTGGA+AGG | - | chr2_1:22789819-22789838 | None:intergenic | 40.0% | |
| TGCTATCATCATGCTTGTGA+TGG | - | chr2_1:22789859-22789878 | None:intergenic | 40.0% | |
| CGGATAATATCAGACCAAAG+TGG | - | chr2_1:22789993-22790012 | None:intergenic | 40.0% | |
| ! | TGCTCCTTCGTTTGCAGTTT+TGG | + | chr2_1:22784079-22784098 | Msa0201390:intron | 45.0% |
| TCATGTGCTTGCGATTGTGA+TGG | - | chr2_1:22785536-22785555 | None:intergenic | 45.0% | |
| ATCACAATCGCAAGCACATG+AGG | + | chr2_1:22785535-22785554 | Msa0201390:CDS | 45.0% | |
| GAGGAGTAGGGCATGATAAT+TGG | - | chr2_1:22785565-22785584 | None:intergenic | 45.0% | |
| AGGTGATTGGATTGCATCCA+AGG | + | chr2_1:22786102-22786121 | Msa0201390:CDS | 45.0% | |
| GGTGATTGGATTGCATCCAA+GGG | + | chr2_1:22786103-22786122 | Msa0201390:CDS | 45.0% | |
| GTCTCTATCTATCATGCCCT+TGG | - | chr2_1:22786122-22786141 | None:intergenic | 45.0% | |
| TTGTGCTTAGCTGCTGTATC+TGG | + | chr2_1:22786292-22786311 | Msa0201390:CDS | 45.0% | |
| ATTCCTTGAGCACCTCGAAT+AGG | - | chr2_1:22786367-22786386 | None:intergenic | 45.0% | |
| AGGAATGACCCCTCTTACTA+TGG | + | chr2_1:22786381-22786400 | Msa0201390:CDS | 45.0% | |
| GGTCTCAAGTCAATACCACT+AGG | - | chr2_1:22786567-22786586 | None:intergenic | 45.0% | |
| TCGAACATGAGATCTTGAGG+AGG | - | chr2_1:22786602-22786621 | None:intergenic | 45.0% | |
| !! | CTCTCTGGAGTCAATTTAGG+TGG | + | chr2_1:22786624-22786643 | Msa0201390:intron | 45.0% |
| AGTGAATTTGCAGGTAAGGG+AGG | - | chr2_1:22786707-22786726 | None:intergenic | 45.0% | |
| ACTGCTAGGAGTGAATTTGC+AGG | - | chr2_1:22786716-22786735 | None:intergenic | 45.0% | |
| GGAGACAGGCTTACATATCT+TGG | + | chr2_1:22786815-22786834 | Msa0201390:CDS | 45.0% | |
| CTGCAGTTAATTAACCACCG+AGG | + | chr2_1:22787116-22787135 | Msa0201390:intron | 45.0% | |
| ! | ATTGCAGAAGTTTTCCTCGG+TGG | - | chr2_1:22787133-22787152 | None:intergenic | 45.0% |
| ACTTCTGCAGTTAACTACCG+AGG | - | chr2_1:22787664-22787683 | None:intergenic | 45.0% | |
| GGCAGTTAACTGCCGAATTA+TGG | - | chr2_1:22787715-22787734 | None:intergenic | 45.0% | |
| TTCGGTTCAGTTCAGCAGTT+CGG | - | chr2_1:22787885-22787904 | None:intergenic | 45.0% | |
| ! | ACTTGGGTTGCACATGGTTT+CGG | - | chr2_1:22788189-22788208 | None:intergenic | 45.0% |
| ! | CTAAGAACTTGGGTTGCACA+TGG | - | chr2_1:22788195-22788214 | None:intergenic | 45.0% |
| ! | GAAGAGCACAAGTCCATTTC+TGG | + | chr2_1:22788468-22788487 | Msa0201390:CDS | 45.0% |
| TGGGGCATACTTCTCAATCA+TGG | + | chr2_1:22788508-22788527 | Msa0201390:CDS | 45.0% | |
| GAAGAGCTGCTCCTGAAATT+AGG | - | chr2_1:22788834-22788853 | None:intergenic | 45.0% | |
| !!! | AGTTTTGGATGTTTGGCCCT+TGG | - | chr2_1:22789114-22789133 | None:intergenic | 45.0% |
| AGGGCCAAACATCCAAAACT+AGG | + | chr2_1:22789114-22789133 | Msa0201390:intron | 45.0% | |
| GGGCCAAACATCCAAAACTA+GGG | + | chr2_1:22789115-22789134 | Msa0201390:intron | 45.0% | |
| ! | CATCTCAATTGGTAGCTGCA+AGG | - | chr2_1:22789291-22789310 | None:intergenic | 45.0% |
| ! | GACCTCTAAACAAGTTGAGC+CGG | + | chr2_1:22789396-22789415 | Msa0201390:intron | 45.0% |
| ! | GCCAGATGAGATATTTGCTG+AGG | + | chr2_1:22789509-22789528 | Msa0201390:CDS | 45.0% |
| CTTCCTTCCAAGTTGCTATG+TGG | + | chr2_1:22789813-22789832 | Msa0201390:CDS | 45.0% | |
| GAACCCATGACATCAAACCA+TGG | - | chr2_1:22789911-22789930 | None:intergenic | 45.0% | |
| !! | ATATTAATAATAACAATTTA+TGG | - | chr2_1:22787198-22787217 | None:intergenic | 5.0% |
| !!! | TTTTATATTTTTTTTTTCAA+AGG | + | chr2_1:22788051-22788070 | Msa0201390:intron | 5.0% |
| !!! | AATAATTTAAGATAATATAT+AGG | + | chr2_1:22788995-22789014 | Msa0201390:intron | 5.0% |
| !! | GGTGTCGATGTTGAGGAGTA+GGG | - | chr2_1:22785577-22785596 | None:intergenic | 50.0% |
| GGATGTCTACCACCTATTCG+AGG | + | chr2_1:22786352-22786371 | Msa0201390:CDS | 50.0% | |
| TTGAGGAGGAGCAAACTCTC+AGG | - | chr2_1:22786588-22786607 | None:intergenic | 50.0% | |
| ATTCGGCAGTTAACTGCGGA+GGG | - | chr2_1:22787085-22787104 | None:intergenic | 50.0% | |
| AATTCGGCAGTTAACTGCGG+AGG | - | chr2_1:22787086-22787105 | None:intergenic | 50.0% | |
| ACTTCGGCAGTTAATTGCCG+AGG | - | chr2_1:22787638-22787657 | None:intergenic | 50.0% | |
| ! | CTGCAGCCGGTTCCATAATT+CGG | + | chr2_1:22787700-22787719 | Msa0201390:intron | 50.0% |
| AATTCGGCAGTTAACTGCCG+AGG | + | chr2_1:22787716-22787735 | Msa0201390:intron | 50.0% | |
| ATTCGGCAGTTAACTGCCGA+GGG | + | chr2_1:22787717-22787736 | Msa0201390:intron | 50.0% | |
| GTTGCACATGGTTTCGGTTC+GGG | - | chr2_1:22788183-22788202 | None:intergenic | 50.0% | |
| GGTTGCACATGGTTTCGGTT+CGG | - | chr2_1:22788184-22788203 | None:intergenic | 50.0% | |
| GTGTAAGCATTAATCGGGGC+TGG | + | chr2_1:22789087-22789106 | Msa0201390:intron | 50.0% | |
| !! | ATTAATCGGGGCTGGTCCAA+GGG | + | chr2_1:22789095-22789114 | Msa0201390:intron | 50.0% |
| ! | GACCGGCTCAACTTGTTTAG+AGG | - | chr2_1:22789401-22789420 | None:intergenic | 50.0% |
| !! | GGGTGTCGATGTTGAGGAGT+AGG | - | chr2_1:22785578-22785597 | None:intergenic | 55.0% |
| !! | AGGGAAGGGTGTCGATGTTG+AGG | - | chr2_1:22785584-22785603 | None:intergenic | 55.0% |
| CCTTGAGCACCTCGAATAGG+TGG | - | chr2_1:22786364-22786383 | None:intergenic | 55.0% | |
| ! | CCACCTATTCGAGGTGCTCA+AGG | + | chr2_1:22786361-22786380 | Msa0201390:CDS | 55.0% |
| ACCACTAGGCCAACCCAAGT+GGG | - | chr2_1:22786553-22786572 | None:intergenic | 55.0% | |
| TACCACTAGGCCAACCCAAG+TGG | - | chr2_1:22786554-22786573 | None:intergenic | 55.0% | |
| TTCGGCAGTTAACTGCGGAG+GGG | - | chr2_1:22787084-22787103 | None:intergenic | 55.0% | |
| CCTCGGTAGTTAACTGCAGC+CGG | + | chr2_1:22787687-22787706 | Msa0201390:intron | 55.0% | |
| TTCGGCAGTTAACTGCCGAG+GGG | + | chr2_1:22787718-22787737 | Msa0201390:intron | 55.0% | |
| !! | CATTAATCGGGGCTGGTCCA+AGG | + | chr2_1:22789094-22789113 | Msa0201390:intron | 55.0% |
| GTGGAGAAGTGATGAGTCCG+AGG | + | chr2_1:22789236-22789255 | Msa0201390:intron | 55.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr2_1:22786549-22786568 | Msa0201390:intron | 60.0% |
| CCGGCTGCAGTTAACTACCG+AGG | - | chr2_1:22787690-22787709 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 22783633 | 22790148 | 22783633 | ID=Msa0201390;Name=Msa0201390 |
| chr2_1 | mRNA | 22783633 | 22790148 | 22783633 | ID=Msa0201390-mRNA-1;Parent=Msa0201390;Name=Msa0201390-mRNA-1;_AED=0.15;_eAED=0.15;_QI=119|1|1|1|0.8|0.66|6|81|576 |
| chr2_1 | exon | 22783633 | 22783747 | 22783633 | ID=Msa0201390-mRNA-1:exon:8964;Parent=Msa0201390-mRNA-1 |
| chr2_1 | exon | 22785496 | 22785623 | 22785496 | ID=Msa0201390-mRNA-1:exon:8965;Parent=Msa0201390-mRNA-1 |
| chr2_1 | exon | 22786056 | 22786520 | 22786056 | ID=Msa0201390-mRNA-1:exon:8966;Parent=Msa0201390-mRNA-1 |
| chr2_1 | exon | 22786754 | 22786858 | 22786754 | ID=Msa0201390-mRNA-1:exon:8967;Parent=Msa0201390-mRNA-1 |
| chr2_1 | exon | 22788464 | 22788882 | 22788464 | ID=Msa0201390-mRNA-1:exon:8968;Parent=Msa0201390-mRNA-1 |
| chr2_1 | exon | 22789450 | 22790148 | 22789450 | ID=Msa0201390-mRNA-1:exon:8969;Parent=Msa0201390-mRNA-1 |
| chr2_1 | five_prime_UTR | 22783633 | 22783747 | 22783633 | ID=Msa0201390-mRNA-1:five_prime_utr;Parent=Msa0201390-mRNA-1 |
| chr2_1 | five_prime_UTR | 22785496 | 22785499 | 22785496 | ID=Msa0201390-mRNA-1:five_prime_utr;Parent=Msa0201390-mRNA-1 |
| chr2_1 | CDS | 22785500 | 22785623 | 22785500 | ID=Msa0201390-mRNA-1:cds;Parent=Msa0201390-mRNA-1 |
| chr2_1 | CDS | 22786056 | 22786520 | 22786056 | ID=Msa0201390-mRNA-1:cds;Parent=Msa0201390-mRNA-1 |
| chr2_1 | CDS | 22786754 | 22786858 | 22786754 | ID=Msa0201390-mRNA-1:cds;Parent=Msa0201390-mRNA-1 |
| chr2_1 | CDS | 22788464 | 22788882 | 22788464 | ID=Msa0201390-mRNA-1:cds;Parent=Msa0201390-mRNA-1 |
| chr2_1 | CDS | 22789450 | 22790067 | 22789450 | ID=Msa0201390-mRNA-1:cds;Parent=Msa0201390-mRNA-1 |
| chr2_1 | three_prime_UTR | 22790068 | 22790148 | 22790068 | ID=Msa0201390-mRNA-1:three_prime_utr;Parent=Msa0201390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
