AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115360 MtrunA17_Chr7g0227631 50.000 152 72 2 13 164 162 309 1.54e-45 151
Msa0115360 MtrunA17_Chr7g0227651 53.237 139 61 2 26 164 249 383 1.84e-45 153
Msa0115360 MtrunA17_Chr7g0227641 49.673 153 73 2 13 165 218 366 2.21e-44 150
Msa0115360 MtrunA17_Chr7g0227831 51.613 124 56 2 40 163 1 120 7.12e-41 134
Msa0115360 MtrunA17_Chr7g0226481 47.436 156 72 4 15 163 197 349 3.30e-37 131
Msa0115360 MtrunA17_Chr7g0226471 46.763 139 73 1 26 163 8 146 3.23e-34 117
Msa0115360 MtrunA17_Chr1g0166251 45.833 144 69 4 25 163 246 385 4.37e-32 118
Msa0115360 MtrunA17_Chr7g0227841 41.558 154 81 3 16 167 32 178 7.08e-32 112
Msa0115360 MtrunA17_Chr7g0227851 42.754 138 71 3 26 163 251 380 1.99e-27 105
Msa0115360 MtrunA17_Chr7g0262091 41.606 137 77 3 28 163 256 390 1.67e-25 100
Msa0115360 MtrunA17_Chr5g0399361 38.710 155 77 6 1 149 73 215 1.28e-24 95.5
Msa0115360 MtrunA17_Chr7g0236211 43.704 135 68 4 32 163 259 388 6.00e-24 96.7
Msa0115360 MtrunA17_Chr1g0212531 68.421 57 18 0 73 129 22 78 2.03e-23 88.2
Msa0115360 MtrunA17_Chr5g0399841 40.909 132 73 4 34 163 54 182 1.02e-22 89.4
Msa0115360 MtrunA17_Chr7g0236111 41.071 112 63 2 55 163 17 128 1.79e-22 87.4
Msa0115360 MtrunA17_Chr3g0124051 39.259 135 80 2 32 164 162 296 3.97e-22 90.5
Msa0115360 MtrunA17_Chr1g0167231 37.500 136 80 4 32 164 2 135 8.83e-22 85.9
Msa0115360 MtrunA17_Chr7g0262081 39.552 134 76 4 32 163 270 400 2.06e-21 89.7
Msa0115360 MtrunA17_Chr7g0255101 36.620 142 80 6 27 163 344 480 5.80e-21 89.0
Msa0115360 MtrunA17_Chr7g0262121 37.179 156 86 6 14 163 243 392 1.92e-20 87.0
Msa0115360 MtrunA17_Chr1g0167711 36.054 147 72 6 30 163 12 149 1.09e-19 80.9
Msa0115360 MtrunA17_Chr3g0080781 38.983 118 64 3 51 163 70 184 3.51e-19 80.1
Msa0115360 MtrunA17_Chr3g0107721 37.500 160 72 5 32 163 260 419 5.55e-19 83.2
Msa0115360 MtrunA17_Chr3g0139601 40.559 143 69 9 32 164 341 477 2.73e-18 81.3
Msa0115360 MtrunA17_Chr7g0236141 48.649 74 37 1 91 163 149 222 7.20e-18 77.8
Msa0115360 MtrunA17_Chr7g0236091 48.649 74 37 1 91 163 149 222 7.20e-18 77.8
Msa0115360 MtrunA17_Chr7g0236181 48.649 74 37 1 91 163 149 222 7.20e-18 77.8
Msa0115360 MtrunA17_Chr3g0093361 36.496 137 80 4 28 163 272 402 9.69e-18 79.3
Msa0115360 MtrunA17_Chr6g0466481 30.968 155 94 5 14 163 232 378 2.76e-17 78.2
Msa0115360 MtrunA17_Chr7g0250281 35.000 140 81 6 28 163 9 142 2.77e-17 74.3
Msa0115360 MtrunA17_Chr6g0465671 30.968 155 94 5 14 163 232 378 3.97e-17 77.4
Msa0115360 MtrunA17_Chr7g0235431 39.716 141 73 4 32 164 238 374 7.98e-17 76.6
Msa0115360 MtrunA17_Chr7g0236151 48.000 75 38 1 90 163 242 316 1.07e-16 75.9
Msa0115360 MtrunA17_Chr7g0236191 48.000 75 38 1 90 163 242 316 1.07e-16 75.9
Msa0115360 MtrunA17_Chr3g0137671 38.636 132 69 5 32 161 74 195 1.27e-16 73.9
Msa0115360 MtrunA17_Chr7g0235841 35.461 141 72 5 31 163 24 153 1.68e-16 72.8
Msa0115360 MtrunA17_Chr3g0120901 34.028 144 85 5 25 163 160 298 3.23e-16 74.3
Msa0115360 MtrunA17_Chr3g0091171 36.090 133 75 4 32 161 238 363 6.06e-16 74.3
Msa0115360 MtrunA17_Chr3g0114151 27.976 168 106 4 8 164 246 409 6.36e-16 74.3
Msa0115360 MtrunA17_Chr3g0142541 33.557 149 84 5 25 163 174 317 8.04e-16 73.6
Msa0115360 MtrunA17_Chr3g0138371 35.714 140 77 5 32 164 256 389 9.48e-16 73.6
Msa0115360 MtrunA17_Chr6g0471031 31.206 141 94 2 25 164 308 446 1.21e-15 73.6
Msa0115360 MtrunA17_Chr6g0465731 30.719 153 93 5 14 161 234 378 1.45e-15 73.2
Msa0115360 MtrunA17_Chr3g0137701 37.162 148 76 7 20 162 254 389 1.60e-15 73.2
Msa0115360 MtrunA17_Chr2g0278161 33.083 133 71 4 32 162 46 162 3.25e-15 69.3
Msa0115360 MtrunA17_Chr1g0181601 30.370 135 83 4 32 163 260 386 3.58e-15 72.0
Msa0115360 MtrunA17_Chr2g0278121 35.338 133 71 3 32 161 297 417 9.08e-15 70.9
Msa0115360 MtrunA17_Chr5g0423901 29.054 148 94 4 19 163 244 383 2.48e-14 69.7
Msa0115360 MtrunA17_Chr3g0080241 32.609 138 82 5 32 165 14 144 3.48e-14 66.6
Msa0115360 MtrunA17_Chr5g0419701 36.567 134 74 6 32 161 260 386 4.74e-14 68.9
Msa0115360 MtrunA17_Chr7g0273871 32.450 151 90 5 19 163 219 363 5.11e-14 68.6
Msa0115360 MtrunA17_Chr3g0137681 33.835 133 77 4 31 162 259 381 5.59e-14 68.6
Msa0115360 MtrunA17_Chr3g0114141 29.861 144 93 3 25 164 80 219 7.03e-14 67.0
Msa0115360 MtrunA17_Chr5g0416501 32.061 131 75 4 32 162 99 215 1.04e-13 66.2
Msa0115360 MtrunA17_Chr5g0419431 29.054 148 97 4 20 165 251 392 1.32e-13 67.8
Msa0115360 MtrunA17_Chr7g0227781 33.333 144 83 6 31 170 22 156 1.65e-13 64.7
Msa0115360 MtrunA17_Chr5g0396401 34.532 139 75 6 32 163 247 376 2.54e-13 66.6
Msa0115360 MtrunA17_Chr7g0222241 36.283 113 63 3 24 132 286 393 2.58e-13 67.0
Msa0115360 MtrunA17_Chr7g0222281 36.283 113 63 3 24 132 286 393 2.58e-13 67.0
Msa0115360 MtrunA17_Chr6g0458601 31.818 132 82 4 32 161 311 436 4.72e-13 66.2
Msa0115360 MtrunA17_Chr0c09g0493551 29.697 165 99 5 12 161 133 295 5.29e-13 65.5
Msa0115360 MtrunA17_Chr5g0423851 32.593 135 82 4 32 164 248 375 6.18e-13 65.5
Msa0115360 MtrunA17_Chr5g0422791 37.736 106 62 2 31 136 80 181 7.01e-13 63.9
Msa0115360 MtrunA17_Chr3g0138391 37.398 123 59 4 32 149 12 121 7.70e-13 64.7
Msa0115360 MtrunA17_Chr3g0086041 35.433 127 67 6 14 134 248 365 1.16e-12 65.1
Msa0115360 MtrunA17_Chr3g0138571 31.126 151 100 4 16 164 239 387 1.55e-12 64.7
Msa0115360 MtrunA17_Chr1g0193401 30.882 136 82 6 32 163 430 557 1.87e-12 64.3
Msa0115360 MtrunA17_Chr5g0431681 33.333 138 77 5 32 160 234 365 1.94e-12 64.3
Msa0115360 MtrunA17_Chr1g0207991 31.884 138 75 4 31 161 143 268 2.91e-12 63.2
Msa0115360 MtrunA17_Chr2g0278221 35.507 138 68 4 30 161 26 148 3.64e-12 61.2
Msa0115360 MtrunA17_Chr3g0137721 36.364 143 71 7 32 161 260 395 4.92e-12 63.2
Msa0115360 MtrunA17_Chr6g0458611 30.827 133 86 4 32 163 185 312 6.54e-12 62.4
Msa0115360 MtrunA17_Chr6g0461431 33.088 136 69 7 32 161 75 194 8.04e-12 61.2
Msa0115360 MtrunA17_Chr5g0395311 29.921 127 84 3 31 156 278 400 1.88e-11 61.6
Msa0115360 MtrunA17_Chr7g0251931 33.571 140 74 6 32 164 70 197 1.93e-11 60.1
Msa0115360 MtrunA17_Chr3g0129731 28.358 134 87 5 23 154 64 190 2.94e-11 59.7
Msa0115360 MtrunA17_Chr7g0224001 28.058 139 95 3 31 169 267 400 4.77e-11 60.1
Msa0115360 MtrunA17_Chr8g0363981 31.884 138 87 3 32 168 301 432 7.15e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115360 AT1G32375.2 35.593 118 64 3 52 163 310 421 1.39e-11 62.4
Msa0115360 AT1G32375.1 35.593 118 64 3 52 163 310 421 1.39e-11 62.4

Find 75 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATAAGGGTTGGTTGTTC+TGG 0.149366 1_3:-34232644 Msa0115360:exon
TCTTAAGCAAACAGAATATT+TGG 0.173113 1_3:+34232247 None:intergenic
TCTATTTATAGCGTATATTT+TGG 0.176771 1_3:-34239374 Msa0115360:five_prime_UTR
GTTGGTTAATCTTAATAGTT+TGG 0.239335 1_3:+34232607 None:intergenic
TTGGTTAATCTTAATAGTTT+GGG 0.267268 1_3:+34232608 None:intergenic
TTTCGCATTCTTTAAAATAT+AGG 0.297297 1_3:+34234164 None:intergenic
GGGTTGGTTGTTCTGGTTGT+AGG 0.300174 1_3:-34232637 Msa0115360:three_prime_UTR
TCCATGCAAAAGCATTCTTA+TGG 0.313111 1_3:+34232212 None:intergenic
TTCTATCAAGCAGTTCAAAT+TGG 0.330817 1_3:+34234467 None:intergenic
GTTCTGCAGTAGGGTTCATT+TGG 0.364655 1_3:-34232504 Msa0115360:three_prime_UTR
CCCAGGTATGGGTGGGATAA+GGG 0.372365 1_3:-34232657 Msa0115360:exon
GCCCAGGTATGGGTGGGATA+AGG 0.379711 1_3:-34232658 Msa0115360:exon
ACCCTTATCCCACCCATACC+TGG 0.379845 1_3:+34232656 None:intergenic
TGCACTCTTATAGGTTATAA+AGG 0.387419 1_3:-34234213 Msa0115360:CDS
AGGGTAAGATTCTCAAGCTT+TGG 0.387860 1_3:+34234429 None:intergenic
GGCTTATCTTTGCGTCCAAT+TGG 0.387906 1_3:-34234494 Msa0115360:CDS
AATTGAGAGGAAAGACATTC+CGG 0.390146 1_3:+34234243 None:intergenic
ACCACAAAATGTATTGGTTC+CGG 0.391464 1_3:-34234262 Msa0115360:CDS
ACAATAGTCGCATCAGAGTT+TGG 0.393876 1_3:+34234088 None:intergenic
AGCTTGACCACTCTTCTTGT+TGG 0.403234 1_3:+34232589 None:intergenic
ATGTAGGTTCAGCCCAGGTA+TGG 0.403828 1_3:-34232669 Msa0115360:intron
GTTCAAATTGGTATGCCAAT+TGG 0.418748 1_3:+34234479 None:intergenic
AACTTAACTCACCTCGAGCT+TGG 0.445621 1_3:-34234516 Msa0115360:CDS
TTCTGTTTGCTTAAGAATGT+AGG 0.445651 1_3:-34232240 Msa0115360:three_prime_UTR
TTGCATAAAAGAGCAGCATT+TGG 0.446222 1_3:-34232174 Msa0115360:three_prime_UTR
ACTTAACTCACCTCGAGCTT+GGG 0.449004 1_3:-34234515 Msa0115360:CDS
CTTACAAAGGATCGACTGTT+GGG 0.467482 1_3:-34239399 Msa0115360:five_prime_UTR
GGTTATAAAGGCACGTACGC+TGG 0.472497 1_3:-34234201 Msa0115360:CDS
ACAATATTTGCATCAGAGCT+TGG 0.473610 1_3:+34239287 None:intergenic
ACAAATAAAATTTGACATGT+AGG 0.476036 1_3:+34239247 None:intergenic
GGCATCCCAAGGATCAAAAC+CGG 0.484279 1_3:+34232149 None:intergenic
TAAAACACAACATCTGCAGT+TGG 0.488516 1_3:+34232425 None:intergenic
CAGTTTGATGGACATGGAGT+TGG 0.489097 1_3:-34234303 Msa0115360:CDS
AAAACACAACATCTGCAGTT+GGG 0.492080 1_3:+34232426 None:intergenic
TCTTACAAAGGATCGACTGT+TGG 0.496130 1_3:-34239400 Msa0115360:five_prime_UTR
ACAAATAAAATTCGACATGT+AGG 0.501293 1_3:+34234048 None:intergenic
TATTCTGATGACAATATTAG+TGG 0.503959 1_3:-34232471 Msa0115360:three_prime_UTR
TGTAGGTTCAGCCCAGGTAT+GGG 0.505588 1_3:-34232668 Msa0115360:intron
AAAAGCTTGACATTGTTGCT+TGG 0.511442 1_3:+34239448 None:intergenic
GTTATAAAGGCACGTACGCT+GGG 0.512071 1_3:-34234200 Msa0115360:CDS
CGACATGTAGGAGCGCATCT+TGG 0.512614 1_3:+34234060 None:intergenic
GAGAATACAGGTTCTGCAGT+AGG 0.513701 1_3:-34232514 Msa0115360:three_prime_UTR
CCCTTATCCCACCCATACCT+GGG 0.516606 1_3:+34232657 None:intergenic
CACAAGGGGATTTAAACATA+AGG 0.517297 1_3:-34234113 Msa0115360:CDS
CTTCTATGTAGGTTCAGCCC+AGG 0.519420 1_3:-34232674 Msa0115360:intron
TATGTTTAAATCCCCTTGTG+AGG 0.525248 1_3:+34234116 None:intergenic
TGGTTAATCTTAATAGTTTG+GGG 0.526179 1_3:+34232609 None:intergenic
TCAAAGACTACAAACGAAAG+AGG 0.532461 1_3:+34232333 None:intergenic
AGAATACAGGTTCTGCAGTA+GGG 0.551142 1_3:-34232513 Msa0115360:three_prime_UTR
AAAAGAGCAGCATTTGGTGC+CGG 0.560258 1_3:-34232168 Msa0115360:three_prime_UTR
GCAAATATTGTTGTGTCCAA+GGG 0.564229 1_3:-34239275 Msa0115360:CDS
GGTATGGGTGGGATAAGGGT+TGG 0.567653 1_3:-34232653 Msa0115360:exon
TGCAAATATTGTTGTGTCCA+AGG 0.571018 1_3:-34239276 Msa0115360:CDS
AGGTTCAGCCCAGGTATGGG+TGG 0.579365 1_3:-34232665 Msa0115360:CDS
TATCTGCAGTAAGAGAATAC+AGG 0.581094 1_3:-34232526 Msa0115360:three_prime_UTR
TTCCATTACAAGGCATCCCA+AGG 0.582223 1_3:+34232138 None:intergenic
TGTGACGATTAAAGCCTCAC+AGG 0.589037 1_3:-34239329 Msa0115360:five_prime_UTR
ACATCTGCAGTTGGGAGACA+CGG 0.593183 1_3:+34232434 None:intergenic
TGAGAATCTTACCCTTCATG+AGG 0.595329 1_3:-34234421 Msa0115360:intron
ATTCTGATGACAATATTAGT+GGG 0.606836 1_3:-34232470 Msa0115360:three_prime_UTR
ACCTTGAGCTTGTCTTACAA+AGG 0.611911 1_3:-34239412 Msa0115360:five_prime_UTR
TGACATGTAGGAGAGCCCCT+TGG 0.621069 1_3:+34239259 None:intergenic
AAACTCTGATGCGACTATTG+TGG 0.622881 1_3:-34234086 Msa0115360:CDS
GGTTCAGCCCAGGTATGGGT+GGG 0.628832 1_3:-34232664 Msa0115360:CDS
CAAAGATAAGCCCAAGCTCG+AGG 0.635434 1_3:+34234505 None:intergenic
ACTGATACACGACTTACAAG+TGG 0.643573 1_3:+34232270 None:intergenic
GTGACGATTAAAGCCTCACA+GGG 0.647822 1_3:-34239328 Msa0115360:five_prime_UTR
CAAATATTGTTGTGTCCAAG+GGG 0.648865 1_3:-34239274 Msa0115360:CDS
GTGACGATTAAAGCCTCACA+AGG 0.648870 1_3:-34234129 Msa0115360:CDS
AGATTAACCAACAAGAAGAG+TGG 0.661252 1_3:-34232596 Msa0115360:three_prime_UTR
TCCTTTGTAAGACAAGCTCA+AGG 0.661671 1_3:+34239411 None:intergenic
TGACGATTAAAGCCTCACAA+GGG 0.662253 1_3:-34234128 Msa0115360:CDS
GACGATTAAAGCCTCACAAG+GGG 0.669603 1_3:-34234127 Msa0115360:CDS
GACGATTAAAGCCTCACAGG+GGG 0.686194 1_3:-34239326 Msa0115360:five_prime_UTR
TGACGATTAAAGCCTCACAG+GGG 0.763827 1_3:-34239327 Msa0115360:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAACTATAAAATC+TGG + chr1_3:34233262-34233281 None:intergenic 10.0%
!! ATATATAAAAAAAAACTATC+TGG + chr1_3:34233395-34233414 None:intergenic 10.0%
!!! ATTTTTGTGTATTAATTAAA+AGG + chr1_3:34235865-34235884 None:intergenic 10.0%
!!! TATATTAAATATTCTTTTGA+TGG - chr1_3:34235884-34235903 Msa0115360:intron 10.0%
!!! AAAATGTAATAAATGATTTT+AGG - chr1_3:34236147-34236166 Msa0115360:intron 10.0%
!! CAAAATAACATAAATAAATT+AGG + chr1_3:34237313-34237332 None:intergenic 10.0%
!!! AGTATTTTATAATTTCAATC+AGG - chr1_3:34234671-34234690 Msa0115360:intron 15.0%
!!! GTATTTTATAATTTCAATCA+GGG - chr1_3:34234672-34234691 Msa0115360:intron 15.0%
!!! ACATTTTAATTTCTTTTTGA+AGG - chr1_3:34235832-34235851 Msa0115360:intron 15.0%
!! ATCAAAAAGACTATAAAATT+GGG + chr1_3:34238195-34238214 None:intergenic 15.0%
!! TATCAAAAAGACTATAAAAT+TGG + chr1_3:34238196-34238215 None:intergenic 15.0%
!!! TCTATTTATAGCGTATATTT+TGG - chr1_3:34232263-34232282 Msa0115360:three_prime_UTR 20.0%
!! ACAAATAAAATTTGACATGT+AGG + chr1_3:34232393-34232412 None:intergenic 20.0%
!!! ATGTCAAATTTTATTTGTTG+AGG - chr1_3:34232395-34232414 Msa0115360:three_prime_UTR 20.0%
!!! ACTTTTCTTTGATACTAATA+TGG - chr1_3:34232505-34232524 Msa0115360:three_prime_UTR 20.0%
!! TAAGAATAGAAATTTCACAA+AGG + chr1_3:34232626-34232645 None:intergenic 20.0%
!!! GTTTTCACTAATTTGAATAT+TGG - chr1_3:34233039-34233058 Msa0115360:intron 20.0%
!! TATTGAGTAAAAGTAAAGAA+AGG - chr1_3:34233107-34233126 Msa0115360:intron 20.0%
!! ATATCACAATAACAAAACAA+AGG + chr1_3:34233185-34233204 None:intergenic 20.0%
!!! ATATGATCTTTCTTCTTTTA+TGG - chr1_3:34233203-34233222 Msa0115360:intron 20.0%
!! TAATAAATTAAGCAAGTTAG+TGG - chr1_3:34233236-34233255 Msa0115360:intron 20.0%
!!! AATTTTATAACCTTTCTCAT+AGG - chr1_3:34233620-34233639 Msa0115360:intron 20.0%
!! TTCAAACATGAAATTAAAGA+AGG - chr1_3:34233998-34234017 Msa0115360:intron 20.0%
!! TCAAACATGAAATTAAAGAA+GGG - chr1_3:34233999-34234018 Msa0115360:intron 20.0%
!! TATATAATGTTTCCATTACA+AGG + chr1_3:34234652-34234671 None:intergenic 20.0%
!!! TTTTCTAGAAAGTAAACTAA+TGG + chr1_3:34235107-34235126 None:intergenic 20.0%
!! ATCTACAAATTTGTAAATTG+TGG + chr1_3:34235225-34235244 None:intergenic 20.0%
!!! TAAGTAGTTTTTCTATTAAG+AGG - chr1_3:34235300-34235319 Msa0115360:intron 20.0%
!! GAAAGAAAAAAAACCTTTAA+TGG + chr1_3:34236126-34236145 None:intergenic 20.0%
!! AAAATACAATGTTGTTCAAA+TGG + chr1_3:34236807-34236826 None:intergenic 20.0%
!!! TTGAACAACATTGTATTTTT+TGG - chr1_3:34236808-34236827 Msa0115360:intron 20.0%
!!! CAAATTACTGATTTATTACT+CGG - chr1_3:34236877-34236896 Msa0115360:intron 20.0%
!!! TTTCGCATTCTTTAAAATAT+AGG + chr1_3:34237476-34237495 None:intergenic 20.0%
!! TGTTTCACTAATTTGAAAAT+TGG - chr1_3:34237973-34237992 Msa0115360:intron 20.0%
!! GTTTCACTAATTTGAAAATT+GGG - chr1_3:34237974-34237993 Msa0115360:intron 20.0%
!! ATTAATGACATACTATTTAC+TGG - chr1_3:34238095-34238114 Msa0115360:intron 20.0%
!! TTAATGACATACTATTTACT+GGG - chr1_3:34238096-34238115 Msa0115360:intron 20.0%
!!! AAGTAGATAATTTGCAAATA+TGG - chr1_3:34238510-34238529 Msa0115360:intron 20.0%
!!! AGTAGATAATTTGCAAATAT+GGG - chr1_3:34238511-34238530 Msa0115360:intron 20.0%
!! TTGGTTAATCTTAATAGTTT+GGG + chr1_3:34239032-34239051 None:intergenic 20.0%
!!! TTGACTCTAGAAAAATATAT+TGG - chr1_3:34239323-34239342 Msa0115360:five_prime_UTR 20.0%
!!! CAAATTTTATTTGTTGAGGA+AGG - chr1_3:34232399-34232418 Msa0115360:three_prime_UTR 25.0%
! TGATACTAATATGGTAGTAT+TGG - chr1_3:34232514-34232533 Msa0115360:three_prime_UTR 25.0%
! ATTGAAAATATATGCCATAG+AGG + chr1_3:34232575-34232594 None:intergenic 25.0%
! AACAATGTACATGTTTATTG+TGG - chr1_3:34232736-34232755 Msa0115360:intron 25.0%
! ACAATGTACATGTTTATTGT+GGG - chr1_3:34232737-34232756 Msa0115360:intron 25.0%
! TTGCAAATTATGATATCCAT+TGG + chr1_3:34232784-34232803 None:intergenic 25.0%
!!! CTGTAGCTTATTTTTTAGTA+TGG - chr1_3:34232910-34232929 Msa0115360:intron 25.0%
! GTTTCAATTAGTTAATCAAG+TGG + chr1_3:34232989-34233008 None:intergenic 25.0%
!!! TTCCTACAACAATTGATTTT+TGG - chr1_3:34233012-34233031 Msa0115360:intron 25.0%
! AACCAAAAATCAATTGTTGT+AGG + chr1_3:34233017-34233036 None:intergenic 25.0%
! AATGAGTTAAACAATCTAGA+TGG + chr1_3:34233078-34233097 None:intergenic 25.0%
! ATTAATGAAATACTCTTCAC+TGG - chr1_3:34233158-34233177 Msa0115360:intron 25.0%
! TTAATGAAATACTCTTCACT+GGG - chr1_3:34233159-34233178 Msa0115360:intron 25.0%
! ATATATTCCTTCTTGTTCTA+AGG - chr1_3:34233281-34233300 Msa0115360:intron 25.0%
! TATATATACCTTCTTGTCTA+AGG - chr1_3:34233408-34233427 Msa0115360:intron 25.0%
!!! CTTTGATGTGGTAATTTTTT+TGG - chr1_3:34233852-34233871 Msa0115360:intron 25.0%
!!! GGATCAGAAATAATTTTAGT+TGG - chr1_3:34233873-34233892 Msa0115360:intron 25.0%
! TGAAACTACTACGAATTAAT+TGG + chr1_3:34233975-34233994 None:intergenic 25.0%
!! GATGATATTTTCTTCTATGT+AGG - chr1_3:34234100-34234119 Msa0115360:CDS 25.0%
!! TGGTTAATCTTGATAGTTTA+GGG + chr1_3:34234179-34234198 None:intergenic 25.0%
!! TTGGTTAATCTTGATAGTTT+AGG + chr1_3:34234180-34234199 None:intergenic 25.0%
!!! TTCTTTTTTCTGATTTTAGC+TGG - chr1_3:34234399-34234418 Msa0115360:intron 25.0%
! ACTACATATGAAAGAGAAAA+TGG + chr1_3:34234456-34234475 None:intergenic 25.0%
!! TATCCACCAATATATCTTTT+TGG + chr1_3:34234487-34234506 None:intergenic 25.0%
! ACATTATAATTGGATAGTGT+TGG + chr1_3:34234896-34234915 None:intergenic 25.0%
!! GTATTGGTGTACATTATAAT+TGG + chr1_3:34234906-34234925 None:intergenic 25.0%
! AAAAGATTATCCAAAACAGA+TGG + chr1_3:34234928-34234947 None:intergenic 25.0%
!!! GCACAAATGCTATTTTATTT+AGG - chr1_3:34234973-34234992 Msa0115360:intron 25.0%
! ATAATATCATTGAGACAACT+TGG - chr1_3:34235023-34235042 Msa0115360:intron 25.0%
!! TGGTAATGTCTCAAATATTT+AGG - chr1_3:34235043-34235062 Msa0115360:intron 25.0%
! GGTAATGTCTCAAATATTTA+GGG - chr1_3:34235044-34235063 Msa0115360:intron 25.0%
! GCATAATACAAAGTTGTATT+AGG + chr1_3:34235157-34235176 None:intergenic 25.0%
!! AATGATAATGTATTTGAGCT+AGG + chr1_3:34235182-34235201 None:intergenic 25.0%
!! TTTTCCCAAAAATAAAAGCT+GGG + chr1_3:34235331-34235350 None:intergenic 25.0%
!! TTTTTCCCAAAAATAAAAGC+TGG + chr1_3:34235332-34235351 None:intergenic 25.0%
! CACACAATTGATAAATTAGA+CGG - chr1_3:34235715-34235734 Msa0115360:intron 25.0%
!!! ATGTCTAGAATTTCGTTTTT+TGG - chr1_3:34236226-34236245 Msa0115360:intron 25.0%
!! ATTATTAGAATCAAAGCGTT+GGG + chr1_3:34236312-34236331 None:intergenic 25.0%
!!! GATTTTAATAAGCTTATCGA+GGG - chr1_3:34236832-34236851 Msa0115360:intron 25.0%
! AATTTGCAAATCATCTACAA+CGG + chr1_3:34236863-34236882 None:intergenic 25.0%
! ATTAGTAAAAACCTCATGAA+GGG + chr1_3:34237230-34237249 None:intergenic 25.0%
!!! ATGTTATTTTGTCAGTTTGA+TGG - chr1_3:34237322-34237341 Msa0115360:intron 25.0%
! CAAAAAACCACAAAATGTAT+TGG - chr1_3:34237369-34237388 Msa0115360:intron 25.0%
! TTAAAAACATGCACTCTTAT+AGG - chr1_3:34237415-34237434 Msa0115360:intron 25.0%
! ACAAATAAAATTCGACATGT+AGG + chr1_3:34237592-34237611 None:intergenic 25.0%
!!! ATGTCGAATTTTATTTGTTG+AGG - chr1_3:34237594-34237613 Msa0115360:intron 25.0%
! ACTTATATTTCACAAAGGTT+GGG + chr1_3:34237813-34237832 None:intergenic 25.0%
! TACTTATATTTCACAAAGGT+TGG + chr1_3:34237814-34237833 None:intergenic 25.0%
! CTCATACTTATATTTCACAA+AGG + chr1_3:34237818-34237837 None:intergenic 25.0%
! TATGAGAATCAAGTTTAGTA+CGG - chr1_3:34237832-34237851 Msa0115360:intron 25.0%
! AATGAGTTAAACAATCAAGA+TGG + chr1_3:34238011-34238030 None:intergenic 25.0%
! AAAGAAAGTTGAAGATTGTT+TGG - chr1_3:34238058-34238077 Msa0115360:intron 25.0%
! TAAGACCTTACTTCTTATAT+TGG - chr1_3:34238141-34238160 Msa0115360:intron 25.0%
! AAAAGCCAATATAAGAAGTA+AGG + chr1_3:34238149-34238168 None:intergenic 25.0%
! TGTATAATTATGTGAGTAAG+TGG - chr1_3:34238169-34238188 Msa0115360:intron 25.0%
! TTGGAATTAATTCTATATCG+AGG - chr1_3:34238342-34238361 Msa0115360:intron 25.0%
! AGTAATGACAATAGATTATC+AGG + chr1_3:34238632-34238651 None:intergenic 25.0%
! TGAAACTACTACGAATTAAT+TGG + chr1_3:34233975-34233994 None:intergenic 25.0%
! TTCAAACATGAAATTCAAGA+AGG - chr1_3:34238836-34238855 Msa0115360:intron 25.0%
! TCAAACATGAAATTCAAGAA+GGG - chr1_3:34238837-34238856 Msa0115360:intron 25.0%
!! GATGATATTTTCTTCTATGT+AGG - chr1_3:34234100-34234119 Msa0115360:CDS 25.0%
! TGGTTAATCTTAATAGTTTG+GGG + chr1_3:34239031-34239050 None:intergenic 25.0%
! GTTGGTTAATCTTAATAGTT+TGG + chr1_3:34239033-34239052 None:intergenic 25.0%
! TATTCTGATGACAATATTAG+TGG - chr1_3:34239166-34239185 Msa0115360:intron 25.0%
! ATTCTGATGACAATATTAGT+GGG - chr1_3:34239167-34239186 Msa0115360:intron 25.0%
!! ACTCTAGAAAAATATATTGG+TGG - chr1_3:34239326-34239345 Msa0115360:five_prime_UTR 25.0%
! TCTTAAGCAAACAGAATATT+TGG + chr1_3:34239393-34239412 None:intergenic 25.0%
AAGTAGAAACAAGTAGAAAG+TGG + chr1_3:34232448-34232467 None:intergenic 30.0%
! ACTAATATGGTAGTATTGGA+TGG - chr1_3:34232518-34232537 Msa0115360:three_prime_UTR 30.0%
ATAGAAATTTCACAAAGGCT+GGG + chr1_3:34232621-34232640 None:intergenic 30.0%
AATAGAAATTTCACAAAGGC+TGG + chr1_3:34232622-34232641 None:intergenic 30.0%
ATAAACATGTACATTGTTCG+AGG + chr1_3:34232734-34232753 None:intergenic 30.0%
TATGAGAATTGCGTTTAGTA+TGG - chr1_3:34232881-34232900 Msa0115360:intron 30.0%
TTAATGCAATTGCAGCATAA+TGG - chr1_3:34233492-34233511 Msa0115360:intron 30.0%
TGATAAATTTGACGCTCTTT+GGG - chr1_3:34233535-34233554 Msa0115360:intron 30.0%
TAAAAGTCTGCTCAAAAGAA+GGG - chr1_3:34233948-34233967 Msa0115360:intron 30.0%
AAGAATCAGTAAGAGAATAC+AGG - chr1_3:34234261-34234280 Msa0115360:CDS 30.0%
TTATTCTGATGACAATGTGT+GGG - chr1_3:34234315-34234334 Msa0115360:intron 30.0%
!!! TTTTTTCTGATTTTAGCTGG+TGG - chr1_3:34234402-34234421 Msa0115360:intron 30.0%
CTGACTCCAAAAAGATATAT+TGG - chr1_3:34234478-34234497 Msa0115360:CDS 30.0%
ACTCCAAAAAGATATATTGG+TGG - chr1_3:34234481-34234500 Msa0115360:CDS 30.0%
TATGTGTTACAACTTACAAG+TGG + chr1_3:34234525-34234544 None:intergenic 30.0%
! TCTTAAGCAAGCAGAATTTT+TGG + chr1_3:34234553-34234572 None:intergenic 30.0%
! CATTTTATGTTTAACAGCAG+AGG - chr1_3:34234701-34234720 Msa0115360:intron 30.0%
AATAAATCTGAACCTGTGAA+TGG + chr1_3:34234772-34234791 None:intergenic 30.0%
ATTATGAACCGAAATTGCTT+TGG + chr1_3:34234806-34234825 None:intergenic 30.0%
CATACAATGTAAAGACTATC+TGG + chr1_3:34234873-34234892 None:intergenic 30.0%
TTATCCAAAACAGATGGTAT+TGG + chr1_3:34234922-34234941 None:intergenic 30.0%
TAGAAAGTAAACTAATGGAG+CGG + chr1_3:34235102-34235121 None:intergenic 30.0%
ATGAAAACAGTTTCTGTGTA+TGG + chr1_3:34235248-34235267 None:intergenic 30.0%
!!! AACAACCCAGCTTTTATTTT+TGG - chr1_3:34235323-34235342 Msa0115360:intron 30.0%
!!! ACAACCCAGCTTTTATTTTT+GGG - chr1_3:34235324-34235343 Msa0115360:intron 30.0%
! ACAAGAGTGTAAGGAAATAA+AGG - chr1_3:34235541-34235560 Msa0115360:intron 30.0%
! CAAGAGTGTAAGGAAATAAA+GGG - chr1_3:34235542-34235561 Msa0115360:intron 30.0%
! TATGTAACATTTTCCTTACG+TGG - chr1_3:34235569-34235588 Msa0115360:intron 30.0%
! ATGTAACATTTTCCTTACGT+GGG - chr1_3:34235570-34235589 Msa0115360:intron 30.0%
! GGGTTTAATACTACGTTTTA+AGG - chr1_3:34235590-34235609 Msa0115360:intron 30.0%
!! GGTCATTTTACCCATTTATT+TGG - chr1_3:34235660-34235679 Msa0115360:intron 30.0%
! CATTTTACCCATTTATTTGG+TGG - chr1_3:34235663-34235682 Msa0115360:intron 30.0%
ACTCCAATTTCTATGTGAAA+AGG - chr1_3:34235933-34235952 Msa0115360:intron 30.0%
CTCCAATTTCTATGTGAAAA+GGG - chr1_3:34235934-34235953 Msa0115360:intron 30.0%
ACTGAGAGATAAGTAGAATT+TGG - chr1_3:34236035-34236054 Msa0115360:intron 30.0%
AGTTATGACTAAACAAATGC+TGG - chr1_3:34236090-34236109 Msa0115360:intron 30.0%
GAAGATGAGAGGAATAATTA+GGG + chr1_3:34236289-34236308 None:intergenic 30.0%
!! TTATTAGAATCAAAGCGTTG+GGG + chr1_3:34236311-34236330 None:intergenic 30.0%
CATTATTAGAATCAAAGCGT+TGG + chr1_3:34236313-34236332 None:intergenic 30.0%
TTGAAAACAGTTTCAAGAGT+AGG + chr1_3:34236694-34236713 None:intergenic 30.0%
!! CGATTTTAATAAGCTTATCG+AGG - chr1_3:34236831-34236850 Msa0115360:intron 30.0%
ATTTGCAAATCATCTACAAC+GGG + chr1_3:34236862-34236881 None:intergenic 30.0%
GTTTAAACGCTTATCTGATT+TGG - chr1_3:34236924-34236943 Msa0115360:intron 30.0%
TTCTATCAAGCAGTTCAAAT+TGG + chr1_3:34237173-34237192 None:intergenic 30.0%
CATTAGTAAAAACCTCATGA+AGG + chr1_3:34237231-34237250 None:intergenic 30.0%
!! AGTGCATGTTTTTAATTGAG+AGG + chr1_3:34237410-34237429 None:intergenic 30.0%
TGCACTCTTATAGGTTATAA+AGG - chr1_3:34237424-34237443 Msa0115360:intron 30.0%
!! CGAATTTTATTTGTTGAGGA+AGG - chr1_3:34237598-34237617 Msa0115360:intron 30.0%
GTCAAAGGAATTCATTCAAT+TGG + chr1_3:34237937-34237956 None:intergenic 30.0%
TGAATTCCTTTGACAATTGA+TGG - chr1_3:34237943-34237962 Msa0115360:intron 30.0%
TTAATTCATTTGCAGCAGAA+TGG - chr1_3:34238295-34238314 Msa0115360:intron 30.0%
!! ATAAATTTTGAGAGCAGCAT+GGG - chr1_3:34238369-34238388 Msa0115360:intron 30.0%
GTGTTAAGGTAGAAACTATA+TGG - chr1_3:34238395-34238414 Msa0115360:intron 30.0%
GAAACTATATGGAAGATTTG+AGG - chr1_3:34238406-34238425 Msa0115360:intron 30.0%
AGAATTTCGTTGAAATCCAT+AGG - chr1_3:34238540-34238559 Msa0115360:intron 30.0%
! TGAAAGTTTGCTCAAAAGAA+GGG - chr1_3:34238786-34238805 Msa0115360:intron 30.0%
ACATAACAAGGAAGACAAAT+TGG + chr1_3:34238864-34238883 None:intergenic 30.0%
ACAGTATGTACTTATTCTGA+AGG + chr1_3:34238922-34238941 None:intergenic 30.0%
!!! TCCTTTTTTCTGATTTTAGC+TGG - chr1_3:34239247-34239266 Msa0115360:CDS 30.0%
!!! CCTTTTTTCTGATTTTAGCT+GGG - chr1_3:34239248-34239267 Msa0115360:CDS 30.0%
!!! CTTTTTTCTGATTTTAGCTG+GGG - chr1_3:34234401-34234420 Msa0115360:intron 30.0%
!!! TTTTTTCTGATTTTAGCTGG+GGG - chr1_3:34234402-34234421 Msa0115360:intron 30.0%
TTCTGTTTGCTTAAGAATGT+AGG - chr1_3:34239397-34239416 Msa0115360:five_prime_UTR 30.0%
AAAAGCTTGACATTGTTGCT+TGG + chr1_3:34232192-34232211 None:intergenic 35.0%
ACAATATTTGCATCAGAGCT+TGG + chr1_3:34232353-34232372 None:intergenic 35.0%
TGCAAATATTGTTGTGTCCA+AGG - chr1_3:34232361-34232380 Msa0115360:three_prime_UTR 35.0%
GCAAATATTGTTGTGTCCAA+GGG - chr1_3:34232362-34232381 Msa0115360:three_prime_UTR 35.0%
CAAATATTGTTGTGTCCAAG+GGG - chr1_3:34232363-34232382 Msa0115360:three_prime_UTR 35.0%
! TATTTGTTGAGGAAGGTTAG+TGG - chr1_3:34232406-34232425 Msa0115360:three_prime_UTR 35.0%
CTATTTCATTAGCTCCTCTA+TGG - chr1_3:34232558-34232577 Msa0115360:three_prime_UTR 35.0%
AACTGCTGTCAGAGAATTAT+TGG + chr1_3:34232649-34232668 None:intergenic 35.0%
ACATGTTTATTGTGGGCTTT+CGG - chr1_3:34232744-34232763 Msa0115360:intron 35.0%
TACCCTAAACTTAGTTGCAT+AGG + chr1_3:34233307-34233326 None:intergenic 35.0%
! ATGCAACTAAGTTTAGGGTA+TGG - chr1_3:34233307-34233326 Msa0115360:intron 35.0%
! TGCAACTAAGTTTAGGGTAT+GGG - chr1_3:34233308-34233327 Msa0115360:intron 35.0%
TACCCTAAACTTAGTTGCAT+AGG + chr1_3:34233307-34233326 None:intergenic 35.0%
! ATGCAACTAAGTTTAGGGTA+TGG - chr1_3:34233307-34233326 Msa0115360:intron 35.0%
! TGCAACTAAGTTTAGGGTAT+GGG - chr1_3:34233308-34233327 Msa0115360:intron 35.0%
GTGATAAATTTGACGCTCTT+TGG - chr1_3:34233534-34233553 Msa0115360:intron 35.0%
GTGTTAAGGTAGAAACTGTA+TGG - chr1_3:34233561-34233580 Msa0115360:intron 35.0%
GAAACTGTATGGAAGATTTG+AGG - chr1_3:34233572-34233591 Msa0115360:intron 35.0%
!! ACTTCCCATAATTCTAGAGT+AGG + chr1_3:34233661-34233680 None:intergenic 35.0%
AGAACTTTGTTGAAATCCAC+AGG - chr1_3:34233707-34233726 Msa0115360:intron 35.0%
!!! TTGTGCTTTTAGCTTTGATG+TGG - chr1_3:34233840-34233859 Msa0115360:intron 35.0%
GTAAAAGTCTGCTCAAAAGA+AGG - chr1_3:34233947-34233966 Msa0115360:intron 35.0%
CAAGATTAACCAACAAGATC+AGG - chr1_3:34234187-34234206 Msa0115360:CDS 35.0%
GTTATTCTGATGACAATGTG+TGG - chr1_3:34234314-34234333 Msa0115360:intron 35.0%
AAAACACGACATCTGTAGTT+GGG + chr1_3:34234366-34234385 None:intergenic 35.0%
TAAAACACGACATCTGTAGT+TGG + chr1_3:34234367-34234386 None:intergenic 35.0%
ATCGTAATCCTTGATCTACA+AGG - chr1_3:34234724-34234743 Msa0115360:intron 35.0%
GAATTTCACCTTGTAGATCA+AGG + chr1_3:34234735-34234754 None:intergenic 35.0%
! GTTTTCAGCCAAAGCAATTT+CGG - chr1_3:34234795-34234814 Msa0115360:intron 35.0%
! TACACCAATACCATCTGTTT+TGG - chr1_3:34234915-34234934 Msa0115360:intron 35.0%
!! TTAGGGATTAGCTGAATATG+TGG - chr1_3:34235061-34235080 Msa0115360:intron 35.0%
TAGAAAACTCTACCAGAGTT+TGG - chr1_3:34235120-34235139 Msa0115360:intron 35.0%
AGTCCAATTTAGAAAACACG+TGG - chr1_3:34235365-34235384 Msa0115360:intron 35.0%
! AAGCCACGTGTTTTCTAAAT+TGG + chr1_3:34235371-34235390 None:intergenic 35.0%
! AGAGGTGTATTGTCACATAA+AGG + chr1_3:34235423-34235442 None:intergenic 35.0%
! AAAGAGAAAGTGTGTTTGTG+CGG + chr1_3:34235486-34235505 None:intergenic 35.0%
ACCTGAACCACCAAATAAAT+GGG + chr1_3:34235673-34235692 None:intergenic 35.0%
AACCTGAACCACCAAATAAA+TGG + chr1_3:34235674-34235693 None:intergenic 35.0%
! GACCCTTTTCACATAGAAAT+TGG + chr1_3:34235939-34235958 None:intergenic 35.0%
GTCAAGAATTGTTCCACATA+TGG - chr1_3:34236001-34236020 Msa0115360:intron 35.0%
GAATTGTTCCACATATGGTT+AGG - chr1_3:34236006-34236025 Msa0115360:intron 35.0%
TGGTGCTCATTAACCATTAA+AGG - chr1_3:34236110-34236129 Msa0115360:intron 35.0%
GGAAGATGAGAGGAATAATT+AGG + chr1_3:34236290-34236309 None:intergenic 35.0%
!! TTTTGGTTGGAAGAAAAGAG+AGG + chr1_3:34236393-34236412 None:intergenic 35.0%
CCTTCAACTTAAGAACAACA+AGG + chr1_3:34236726-34236745 None:intergenic 35.0%
!! CCTTGTTGTTCTTAAGTTGA+AGG - chr1_3:34236723-34236742 Msa0115360:intron 35.0%
GAACAACATCCTCTCTTATT+AGG + chr1_3:34236753-34236772 None:intergenic 35.0%
!!! AAATGGAGAGTTTTGAGAAG+CGG + chr1_3:34236790-34236809 None:intergenic 35.0%
AATGTTTCGAATTTGCAGAG+AGG - chr1_3:34236955-34236974 Msa0115360:intron 35.0%
GTTCAAATTGGTATGCCAAT+TGG + chr1_3:34237161-34237180 None:intergenic 35.0%
!! TTTTGTCAGTTTGATGGACA+TGG - chr1_3:34237328-34237347 Msa0115360:intron 35.0%
!! ACCACAAAATGTATTGGTTC+CGG - chr1_3:34237375-34237394 Msa0115360:intron 35.0%
AATTGAGAGGAAAGACATTC+CGG + chr1_3:34237397-34237416 None:intergenic 35.0%
TATGTTTAAATCCCCTTGTG+AGG + chr1_3:34237524-34237543 None:intergenic 35.0%
CACAAGGGGATTTAAACATA+AGG - chr1_3:34237524-34237543 Msa0115360:intron 35.0%
! TATTTGTTGAGGAAGGTTAG+TGG - chr1_3:34232406-34232425 Msa0115360:three_prime_UTR 35.0%
ACTAGCAAGTAGAAACTAGT+AGG + chr1_3:34237653-34237672 None:intergenic 35.0%
TATATTTCACAAAGGTTGGG+AGG + chr1_3:34237810-34237829 None:intergenic 35.0%
! TTCCTTTGACAATTGATGGT+TGG - chr1_3:34237947-34237966 Msa0115360:intron 35.0%
AACCAACCATCAATTGTCAA+AGG + chr1_3:34237952-34237971 None:intergenic 35.0%
GGTCTATGCAACTAAGTTTA+CGG - chr1_3:34238232-34238251 Msa0115360:intron 35.0%
TTAATTCCAACTCACTACAG+TGG + chr1_3:34238332-34238351 None:intergenic 35.0%
!! GATAAATTTTGAGAGCAGCA+TGG - chr1_3:34238368-34238387 Msa0115360:intron 35.0%
! GTGAAAGTTTGCTCAAAAGA+AGG - chr1_3:34238785-34238804 Msa0115360:intron 35.0%
AGGTAATTGAACAGGAAGAA+GGG + chr1_3:34238889-34238908 None:intergenic 35.0%
AGATTAACCAACAAGAAGAG+TGG - chr1_3:34239041-34239060 Msa0115360:intron 35.0%
! GCACAAAAATCATTTTGCTG+TGG - chr1_3:34239071-34239090 Msa0115360:intron 35.0%
TATCTGCAGTAAGAGAATAC+AGG - chr1_3:34239111-34239130 Msa0115360:intron 35.0%
AAAACACAACATCTGCAGTT+GGG + chr1_3:34239214-34239233 None:intergenic 35.0%
TAAAACACAACATCTGCAGT+TGG + chr1_3:34239215-34239234 None:intergenic 35.0%
CCCAGCTAAAATCAGAAAAA+AGG + chr1_3:34239251-34239270 None:intergenic 35.0%
TCAAAGACTACAAACGAAAG+AGG + chr1_3:34239307-34239326 None:intergenic 35.0%
! ACCATAAGAATGCTTTTGCA+TGG - chr1_3:34239424-34239443 Msa0115360:five_prime_UTR 35.0%
!! TCCATGCAAAAGCATTCTTA+TGG + chr1_3:34239428-34239447 None:intergenic 35.0%
TTGCATAAAAGAGCAGCATT+TGG - chr1_3:34239463-34239482 Msa0115360:five_prime_UTR 35.0%
ACCTTGAGCTTGTCTTACAA+AGG - chr1_3:34232225-34232244 Msa0115360:three_prime_UTR 40.0%
TCCTTTGTAAGACAAGCTCA+AGG + chr1_3:34232229-34232248 None:intergenic 40.0%
TCTTACAAAGGATCGACTGT+TGG - chr1_3:34232237-34232256 Msa0115360:three_prime_UTR 40.0%
CTTACAAAGGATCGACTGTT+GGG - chr1_3:34232238-34232257 Msa0115360:three_prime_UTR 40.0%
TATGTTTAAATCCCCCTGTG+AGG + chr1_3:34232325-34232344 None:intergenic 40.0%
CACAGGGGGATTTAAACATA+AGG - chr1_3:34232325-34232344 Msa0115360:three_prime_UTR 40.0%
! AGGTTAGTGGATGTCTACTT+TGG - chr1_3:34232419-34232438 Msa0115360:three_prime_UTR 40.0%
!! ATGCATCGACTGCAAACTTT+GGG + chr1_3:34232702-34232721 None:intergenic 40.0%
!! TATGCATCGACTGCAAACTT+TGG + chr1_3:34232703-34232722 None:intergenic 40.0%
TTTATTGTGGGCTTTCGGAA+AGG - chr1_3:34232749-34232768 Msa0115360:intron 40.0%
GGAAAGGAGTAATGATCCAA+TGG - chr1_3:34232765-34232784 Msa0115360:intron 40.0%
AGGCCTATGCAACTAAGTTT+AGG - chr1_3:34233301-34233320 Msa0115360:intron 40.0%
GGCCTATGCAACTAAGTTTA+GGG - chr1_3:34233302-34233321 Msa0115360:intron 40.0%
TGGGATGTGAATCAACACAA+AGG - chr1_3:34233327-34233346 Msa0115360:intron 40.0%
GGGATGTGAATCAACACAAA+GGG - chr1_3:34233328-34233347 Msa0115360:intron 40.0%
AACACAAAGGGATAGTGACT+GGG - chr1_3:34233340-34233359 Msa0115360:intron 40.0%
TGCAATTGCAAGCAAGTTAG+TGG - chr1_3:34233369-34233388 Msa0115360:intron 40.0%
AGGCCTATGCAACTAAGTTT+AGG - chr1_3:34233301-34233320 Msa0115360:intron 40.0%
GGCCTATGCAACTAAGTTTA+GGG - chr1_3:34233302-34233321 Msa0115360:intron 40.0%
TGGGATGTGAATCAACACAA+AGG - chr1_3:34233327-34233346 Msa0115360:intron 40.0%
GGGATGTGAATCAACACAAA+GGG - chr1_3:34233328-34233347 Msa0115360:intron 40.0%
AACACAAAGGGATAGTGACT+GGG - chr1_3:34233340-34233359 Msa0115360:intron 40.0%
TTTATCACTGCAGTGGATGT+AGG + chr1_3:34233522-34233541 None:intergenic 40.0%
CGTCAAATTTATCACTGCAG+TGG + chr1_3:34233529-34233548 None:intergenic 40.0%
AAATTTGACGCTCTTTGGGT+AGG - chr1_3:34233539-34233558 Msa0115360:intron 40.0%
! ATGGAAGATTTGAGGCTCTT+TGG - chr1_3:34233580-34233599 Msa0115360:intron 40.0%
! AGATTTGAGGCTCTTTGGAT+AGG - chr1_3:34233585-34233604 Msa0115360:intron 40.0%
! GATTTGAGGCTCTTTGGATA+GGG - chr1_3:34233586-34233605 Msa0115360:intron 40.0%
! ATTTGAGGCTCTTTGGATAG+GGG - chr1_3:34233587-34233606 Msa0115360:intron 40.0%
!! CAGGCCTACTCTAGAATTAT+GGG - chr1_3:34233654-34233673 Msa0115360:intron 40.0%
! GCTATTCTGAGGAAGCATAT+CGG - chr1_3:34233743-34233762 Msa0115360:intron 40.0%
! ACAACATTGTCATGCTGGTT+AGG + chr1_3:34233824-34233843 None:intergenic 40.0%
AAAGCACAACATTGTCATGC+TGG + chr1_3:34233829-34233848 None:intergenic 40.0%
ACAGAACAGGGAAGACAAAT+TGG + chr1_3:34234026-34234045 None:intergenic 40.0%
ATGCACTTGAACAGGAAGAA+GGG + chr1_3:34234051-34234070 None:intergenic 40.0%
TATGCACTTGAACAGGAAGA+AGG + chr1_3:34234052-34234071 None:intergenic 40.0%
AACACACTATGCACTTGAAC+AGG + chr1_3:34234059-34234078 None:intergenic 40.0%
TGGTCAAGCTGCACAAAAAT+CGG - chr1_3:34234220-34234239 Msa0115360:CDS 40.0%
AGAGAATACAGGTTCTACAG+TGG - chr1_3:34234272-34234291 Msa0115360:CDS 40.0%
GAGAATACAGGTTCTACAGT+GGG - chr1_3:34234273-34234292 Msa0115360:CDS 40.0%
AGAATACAGGTTCTACAGTG+GGG - chr1_3:34234274-34234293 Msa0115360:CDS 40.0%
ATCTGTAGTTGGGAGACAAA+GGG + chr1_3:34234356-34234375 None:intergenic 40.0%
! TGCTTTTACCTCGAACGAAA+TGG - chr1_3:34234574-34234593 Msa0115360:intron 40.0%
! GCTTTTACCTCGAACGAAAT+GGG - chr1_3:34234575-34234594 Msa0115360:intron 40.0%
AAATGCATCCCTTTCATGCA+AGG + chr1_3:34234604-34234623 None:intergenic 40.0%
TTGCATGAAAGGGATGCATT+TGG - chr1_3:34234603-34234622 Msa0115360:intron 40.0%
TCTACAAGGTGAAATTCCGT+TGG - chr1_3:34234738-34234757 Msa0115360:intron 40.0%
GTGAATGGTTTCAGAACCAA+CGG + chr1_3:34234757-34234776 None:intergenic 40.0%
!! TTGGTTCTGAAACCATTCAC+AGG - chr1_3:34234757-34234776 Msa0115360:intron 40.0%
CGGTTCATAATGCGTAACAT+TGG - chr1_3:34234815-34234834 Msa0115360:intron 40.0%
!! CATGTGTCGATTGAAATGCT+CGG - chr1_3:34234840-34234859 Msa0115360:intron 40.0%
GTTGATGTATTGCCAAACTC+TGG + chr1_3:34235135-34235154 None:intergenic 40.0%
ATTTCTGTGTGGATGTCAAG+AGG + chr1_3:34235441-34235460 None:intergenic 40.0%
! AAGAGAAAGTGTGTTTGTGC+GGG + chr1_3:34235485-34235504 None:intergenic 40.0%
ATGCATTAGGAAGAGAGAAG+AGG + chr1_3:34235514-34235533 None:intergenic 40.0%
TCTTCTCTCTTCCTAATGCA+TGG - chr1_3:34235513-34235532 Msa0115360:intron 40.0%
CTTCTCTCTTCCTAATGCAT+GGG - chr1_3:34235514-34235533 Msa0115360:intron 40.0%
TTCTCTCTTCCTAATGCATG+GGG - chr1_3:34235515-34235534 Msa0115360:intron 40.0%
CGTAGTATTAAACCCACGTA+AGG + chr1_3:34235585-34235604 None:intergenic 40.0%
GCACGATATATCACTATCCA+CGG - chr1_3:34235619-34235638 Msa0115360:intron 40.0%
CACGATATATCACTATCCAC+GGG - chr1_3:34235620-34235639 Msa0115360:intron 40.0%
!! ACGGGTCATTTTACTATCCA+CGG - chr1_3:34235638-34235657 Msa0115360:intron 40.0%
TAAATGGGTAAAATGACCCG+TGG + chr1_3:34235658-34235677 None:intergenic 40.0%
! ACCCATTTATTTGGTGGTTC+AGG - chr1_3:34235669-34235688 Msa0115360:intron 40.0%
CTATGTGAAAAGGGTCTTCA+TGG - chr1_3:34235943-34235962 Msa0115360:intron 40.0%
TGAGGGAGACAAGTAAAATC+TGG - chr1_3:34235979-34235998 Msa0115360:intron 40.0%
GTCAAACTCCTAACCATATG+TGG + chr1_3:34236017-34236036 None:intergenic 40.0%
ATAATGTCTTCCAATGTCCG+TGG - chr1_3:34236327-34236346 Msa0115360:intron 40.0%
!! TAAATCGCTGATTCTGTCCA+CGG + chr1_3:34236347-34236366 None:intergenic 40.0%
AGAGAGGATGTGACAGATAA+TGG + chr1_3:34236377-34236396 None:intergenic 40.0%
CAAGCATTCTTTCCAAGAGA+TGG - chr1_3:34236425-34236444 Msa0115360:intron 40.0%
TGTAACTTCCGAAGCAGATT+AGG - chr1_3:34236667-34236686 Msa0115360:intron 40.0%
GAAGGCAATCCTAATAAGAG+AGG - chr1_3:34236741-34236760 Msa0115360:intron 40.0%
AGAAGCGGAAAATGAAACTG+AGG + chr1_3:34236775-34236794 None:intergenic 40.0%
TTACTCGGCTCAACTAATGA+AGG - chr1_3:34236892-34236911 Msa0115360:intron 40.0%
GGCTCAACTAATGAAGGTAA+TGG - chr1_3:34236898-34236917 Msa0115360:intron 40.0%
AGGGTAAGATTCTCAAGCTT+TGG + chr1_3:34237211-34237230 None:intergenic 40.0%
TGAGAATCTTACCCTTCATG+AGG - chr1_3:34237216-34237235 Msa0115360:intron 40.0%
! TCCGGAACCAATACATTTTG+TGG + chr1_3:34237379-34237398 None:intergenic 40.0%
TGACGATTAAAGCCTCACAA+GGG - chr1_3:34237509-34237528 Msa0115360:intron 40.0%
ACAATAGTCGCATCAGAGTT+TGG + chr1_3:34237552-34237571 None:intergenic 40.0%
AAACTCTGATGCGACTATTG+TGG - chr1_3:34237551-34237570 Msa0115360:intron 40.0%
! AGGTTAGTGGATGTCTACTT+TGG - chr1_3:34232419-34232438 Msa0115360:three_prime_UTR 40.0%
AAGTAGAAACTAGTAGGTGG+TGG + chr1_3:34237647-34237666 None:intergenic 40.0%
AGCAAGTAGAAACTAGTAGG+TGG + chr1_3:34237650-34237669 None:intergenic 40.0%
! AAGTTTAGTACGGCTCTAAC+TGG - chr1_3:34237842-34237861 Msa0115360:intron 40.0%
TGATAGACCTACGTGTTCTA+AGG - chr1_3:34238211-34238230 Msa0115360:intron 40.0%
ATGCAACTAAGTTTACGGCA+TGG - chr1_3:34238237-34238256 Msa0115360:intron 40.0%
TGCAACTAAGTTTACGGCAT+GGG - chr1_3:34238238-34238257 Msa0115360:intron 40.0%
TGGGATGTGAATGAACAGAA+AGG - chr1_3:34238257-34238276 Msa0115360:intron 40.0%
GGGATGTGAATGAACAGAAA+GGG - chr1_3:34238258-34238277 Msa0115360:intron 40.0%
GGATGTGAATGAACAGAAAG+GGG - chr1_3:34238259-34238278 Msa0115360:intron 40.0%
! ATGGAAGATTTGAGGCTCTT+TGG - chr1_3:34233580-34233599 Msa0115360:intron 40.0%
! AGATTTGAGGCTCTTTGGAT+AGG - chr1_3:34233585-34233604 Msa0115360:intron 40.0%
! GATTTGAGGCTCTTTGGATA+GGG - chr1_3:34233586-34233605 Msa0115360:intron 40.0%
! ATTTGAGGCTCTTTGGATAG+GGG - chr1_3:34233587-34233606 Msa0115360:intron 40.0%
!! ACTTCCCATGATTCTAGAGT+AGG + chr1_3:34238494-34238513 None:intergenic 40.0%
TCATAAACGAGGCTATTCTC+AGG - chr1_3:34238567-34238586 Msa0115360:intron 40.0%
! GCTATTCTCAGGAAGCATAT+GGG - chr1_3:34238578-34238597 Msa0115360:intron 40.0%
TTACTCAGTTCCTAACAAGC+AGG - chr1_3:34238647-34238666 Msa0115360:intron 40.0%
ACAACATTGTCCTGCTTGTT+AGG + chr1_3:34238660-34238679 None:intergenic 40.0%
! TTGTGCTTTCAGCTTTGATG+TGG - chr1_3:34238676-34238695 Msa0115360:intron 40.0%
GGAAGAAGGGTAACATAACA+AGG + chr1_3:34238876-34238895 None:intergenic 40.0%
CAGGTAATTGAACAGGAAGA+AGG + chr1_3:34238890-34238909 None:intergenic 40.0%
AGCAGAACAGGTAATTGAAC+AGG + chr1_3:34238897-34238916 None:intergenic 40.0%
! ATTCTGAAGGTTAGCAGAAC+AGG + chr1_3:34238909-34238928 None:intergenic 40.0%
AGAATACAGGTTCTGCAGTA+GGG - chr1_3:34239124-34239143 Msa0115360:intron 40.0%
ACTGATACACGACTTACAAG+TGG + chr1_3:34239370-34239389 None:intergenic 40.0%
TGTGACGATTAAAGCCTCAC+AGG - chr1_3:34232308-34232327 Msa0115360:three_prime_UTR 45.0%
GTGACGATTAAAGCCTCACA+GGG - chr1_3:34232309-34232328 Msa0115360:three_prime_UTR 45.0%
TGACGATTAAAGCCTCACAG+GGG - chr1_3:34232310-34232329 Msa0115360:three_prime_UTR 45.0%
GAAATTTCACAAAGGCTGGG+AGG + chr1_3:34232618-34232637 None:intergenic 45.0%
GCATAGGCCTTAGAACAAGA+AGG + chr1_3:34233291-34233310 None:intergenic 45.0%
CAACACAAAGGGATAGTGAC+TGG - chr1_3:34233339-34233358 Msa0115360:intron 45.0%
TGCATAGGCCTTAGACAAGA+AGG + chr1_3:34233419-34233438 None:intergenic 45.0%
CAACACAAAGGGATAGTGAC+TGG - chr1_3:34233339-34233358 Msa0115360:intron 45.0%
! TTTGAGGCTCTTTGGATAGG+GGG - chr1_3:34233588-34233607 Msa0115360:intron 45.0%
!! ATTCTAGAGTAGGCCTGGTA+CGG + chr1_3:34233651-34233670 None:intergenic 45.0%
!! CCATAATTCTAGAGTAGGCC+TGG + chr1_3:34233656-34233675 None:intergenic 45.0%
!! CCAGGCCTACTCTAGAATTA+TGG - chr1_3:34233653-34233672 Msa0115360:intron 45.0%
TCTCAAACGAGGCTATTCTG+AGG - chr1_3:34233732-34233751 Msa0115360:intron 45.0%
GGAAGAAGGGTAACAGAACA+GGG + chr1_3:34234038-34234057 None:intergenic 45.0%
AGGAAGAAGGGTAACAGAAC+AGG + chr1_3:34234039-34234058 None:intergenic 45.0%
ATGTAGGTTCAGCCCATGTA+TGG - chr1_3:34234116-34234135 Msa0115360:CDS 45.0%
TGTAGGTTCAGCCCATGTAT+GGG - chr1_3:34234117-34234136 Msa0115360:CDS 45.0%
! AGACAAGGCTTGGTTGTTGT+TGG - chr1_3:34234142-34234161 Msa0115360:CDS 45.0%
!! GGCTTGGTTGTTGTTGGTTT+AGG - chr1_3:34234148-34234167 Msa0115360:CDS 45.0%
! TATTGGCTGCCTGATCTTGT+TGG + chr1_3:34234199-34234218 None:intergenic 45.0%
TTGTGCAGCTTGACCACTAT+TGG + chr1_3:34234216-34234235 None:intergenic 45.0%
!! GCACAAAAATCGGCTTGCTA+TGG - chr1_3:34234230-34234249 Msa0115360:CDS 45.0%
TCTGTAGTTGGGAGACAAAG+GGG + chr1_3:34234355-34234374 None:intergenic 45.0%
CATCTGTAGTTGGGAGACAA+AGG + chr1_3:34234357-34234376 None:intergenic 45.0%
AATGGGATGCCTTGCATGAA+AGG - chr1_3:34234592-34234611 Msa0115360:intron 45.0%
ATGGGATGCCTTGCATGAAA+GGG - chr1_3:34234593-34234612 Msa0115360:intron 45.0%
!!! TGGTGCTGGTTTTGATCTCT+TGG - chr1_3:34234623-34234642 Msa0115360:intron 45.0%
!!! GGTGCTGGTTTTGATCTCTT+GGG - chr1_3:34234624-34234643 Msa0115360:intron 45.0%
ATCTCTTGGGTGCCTTGTAA+TGG - chr1_3:34234637-34234656 Msa0115360:intron 45.0%
CCACGTGTTAGATTTCTGTG+TGG + chr1_3:34235452-34235471 None:intergenic 45.0%
CCACACAGAAATCTAACACG+TGG - chr1_3:34235449-34235468 Msa0115360:intron 45.0%
! AGAGAAAGTGTGTTTGTGCG+GGG + chr1_3:34235484-34235503 None:intergenic 45.0%
TTAGGAAGAGAGAAGAGGAG+AGG + chr1_3:34235509-34235528 None:intergenic 45.0%
TCTTGTACACCCCATGCATT+AGG + chr1_3:34235527-34235546 None:intergenic 45.0%
! ATGGGGTGTACAAGAGTGTA+AGG - chr1_3:34235532-34235551 Msa0115360:intron 45.0%
GTGGATAGTAAAATGACCCG+TGG + chr1_3:34235639-34235658 None:intergenic 45.0%
!! CGGGTCATTTTACTATCCAC+GGG - chr1_3:34235639-34235658 Msa0115360:intron 45.0%
! GGTGGTTCAGGTTAAATGCT+TGG - chr1_3:34235681-34235700 Msa0115360:intron 45.0%
GGTCTTCATGGTTCAGAGTT+CGG - chr1_3:34235955-34235974 Msa0115360:intron 45.0%
GGACAGAATCAGCGATTTAC+CGG - chr1_3:34236348-34236367 Msa0115360:intron 45.0%
! ATGTGACAGATAATGGCGTC+CGG + chr1_3:34236370-34236389 None:intergenic 45.0%
!!! GTAGCAGCAGATGTTTTGGT+TGG + chr1_3:34236406-34236425 None:intergenic 45.0%
! GCTTGTAGCAGCAGATGTTT+TGG + chr1_3:34236410-34236429 None:intergenic 45.0%
! CCACAATGGATTCCATCTCT+TGG + chr1_3:34236440-34236459 None:intergenic 45.0%
CCAAGAGATGGAATCCATTG+TGG - chr1_3:34236437-34236456 Msa0115360:intron 45.0%
TGTAAAGTCGAGAGCGAGAA+CGG + chr1_3:34236467-34236486 None:intergenic 45.0%
AATGATCGGATGTGCAAGGT+GGG + chr1_3:34236541-34236560 None:intergenic 45.0%
! GACATTTGAGGCGGAATGAT+CGG + chr1_3:34236555-34236574 None:intergenic 45.0%
GATCATTCCGCCTCAAATGT+CGG - chr1_3:34236554-34236573 Msa0115360:intron 45.0%
ATCATTCCGCCTCAAATGTC+GGG - chr1_3:34236555-34236574 Msa0115360:intron 45.0%
ATTCGCAATCCCGACATTTG+AGG + chr1_3:34236567-34236586 None:intergenic 45.0%
GAGTAGGACCTAATCTGCTT+CGG + chr1_3:34236678-34236697 None:intergenic 45.0%
AACTTAACTCACCTCGAGCT+TGG - chr1_3:34237121-34237140 Msa0115360:intron 45.0%
ACTTAACTCACCTCGAGCTT+GGG - chr1_3:34237122-34237141 Msa0115360:intron 45.0%
! CAGTTTGATGGACATGGAGT+TGG - chr1_3:34237334-34237353 Msa0115360:intron 45.0%
! GTTATAAAGGCACGTACGCT+GGG - chr1_3:34237437-34237456 Msa0115360:intron 45.0%
GTGACGATTAAAGCCTCACA+AGG - chr1_3:34232309-34232328 Msa0115360:three_prime_UTR 45.0%
GACGATTAAAGCCTCACAAG+GGG - chr1_3:34237510-34237529 Msa0115360:intron 45.0%
GCATAGACCTTAGAACACGT+AGG + chr1_3:34238221-34238240 None:intergenic 45.0%
AACAGAAAGGGGTAGTGACT+GGG - chr1_3:34238270-34238289 Msa0115360:intron 45.0%
CAACTCACTACAGTGGATGT+AGG + chr1_3:34238325-34238344 None:intergenic 45.0%
CTACATCCACTGTAGTGAGT+TGG - chr1_3:34238323-34238342 Msa0115360:intron 45.0%
TACAAGGGGGTCTATGAGAA+AGG + chr1_3:34238466-34238485 None:intergenic 45.0%
!! CAGGCCTACTCTAGAATCAT+GGG - chr1_3:34238487-34238506 Msa0115360:intron 45.0%
CCTCGTTTATGAGACACCTA+TGG + chr1_3:34238559-34238578 None:intergenic 45.0%
CCATAGGTGTCTCATAAACG+AGG - chr1_3:34238556-34238575 Msa0115360:intron 45.0%
! GGCTATTCTCAGGAAGCATA+TGG - chr1_3:34238577-34238596 Msa0115360:intron 45.0%
AGCTTGACCACTCTTCTTGT+TGG + chr1_3:34239051-34239070 None:intergenic 45.0%
GAGAATACAGGTTCTGCAGT+AGG - chr1_3:34239123-34239142 Msa0115360:intron 45.0%
GTTCTGCAGTAGGGTTCATT+TGG - chr1_3:34239133-34239152 Msa0115360:intron 45.0%
!! AAAAGAGCAGCATTTGGTGC+CGG - chr1_3:34239469-34239488 Msa0115360:five_prime_UTR 45.0%
!! TAAATTAAATCTAATTTATT+AGG - chr1_3:34237740-34237759 Msa0115360:intron 5.0%
GACGATTAAAGCCTCACAGG+GGG - chr1_3:34232311-34232330 Msa0115360:three_prime_UTR 50.0%
! CATCGACTGCAAACTTTGGG+TGG + chr1_3:34232699-34232718 None:intergenic 50.0%
GAACGCGAGTGTGCTTTCAA+TGG - chr1_3:34232824-34232843 Msa0115360:intron 50.0%
CGCTCTTTGGGTAGGTGTTA+AGG - chr1_3:34233547-34233566 Msa0115360:intron 50.0%
!! TTCTAGAGTAGGCCTGGTAC+GGG + chr1_3:34233650-34233669 None:intergenic 50.0%
ATCCACAGGTGTCTCAAACG+AGG - chr1_3:34233721-34233740 Msa0115360:intron 50.0%
GCCTTGTCTCACCCATACAT+GGG + chr1_3:34234131-34234150 None:intergenic 50.0%
! AGCCTTGTCTCACCCATACA+TGG + chr1_3:34234132-34234151 None:intergenic 50.0%
TGTATGGGTGAGACAAGGCT+TGG - chr1_3:34234132-34234151 Msa0115360:CDS 50.0%
CAAGATCAGGCAGCCAATAG+TGG - chr1_3:34234200-34234219 Msa0115360:CDS 50.0%
GTTCTACAGTGGGGCTCATT+TGG - chr1_3:34234283-34234302 Msa0115360:CDS 50.0%
CTGTAGTTGGGAGACAAAGG+GGG + chr1_3:34234354-34234373 None:intergenic 50.0%
! AAGGCATCCCATTTCGTTCG+AGG + chr1_3:34234585-34234604 None:intergenic 50.0%
!! GAAAGGGATGCATTTGGTGC+TGG - chr1_3:34234609-34234628 Msa0115360:intron 50.0%
ATGGTTCAGAGTTCGGCTGA+GGG - chr1_3:34235962-34235981 Msa0115360:intron 50.0%
ATCAGAGTTTGCGCAGAGTG+AGG + chr1_3:34236255-34236274 None:intergenic 50.0%
!! AAAGCGTTGGGGAAGATGAG+AGG + chr1_3:34236300-34236319 None:intergenic 50.0%
CTGATTCTGTCCACGGACAT+TGG + chr1_3:34236340-34236359 None:intergenic 50.0%
ATGATCGGATGTGCAAGGTG+GGG + chr1_3:34236540-34236559 None:intergenic 50.0%
GAATGATCGGATGTGCAAGG+TGG + chr1_3:34236542-34236561 None:intergenic 50.0%
AGAGGAAGCCGATTGTTGGA+CGG - chr1_3:34236973-34236992 Msa0115360:intron 50.0%
CAAACCCTCCGTCCAACAAT+CGG + chr1_3:34236984-34237003 None:intergenic 50.0%
ATTGTTGGACGGAGGGTTTG+AGG - chr1_3:34236984-34237003 Msa0115360:intron 50.0%
! GGTTATAAAGGCACGTACGC+TGG - chr1_3:34237436-34237455 Msa0115360:intron 50.0%
GAACAGAAAGGGGTAGTGAC+TGG - chr1_3:34238269-34238288 Msa0115360:intron 50.0%
AGCAGCATGGGCAAGTGTTA+AGG - chr1_3:34238381-34238400 Msa0115360:intron 50.0%
TAGAGTAGGCCTGGTACAAG+GGG + chr1_3:34238480-34238499 None:intergenic 50.0%
CTAGAGTAGGCCTGGTACAA+GGG + chr1_3:34238481-34238500 None:intergenic 50.0%
! TCTAGAGTAGGCCTGGTACA+AGG + chr1_3:34238482-34238501 None:intergenic 50.0%
!! CCATGATTCTAGAGTAGGCC+TGG + chr1_3:34238489-34238508 None:intergenic 50.0%
!! CCAGGCCTACTCTAGAATCA+TGG - chr1_3:34238486-34238505 Msa0115360:intron 50.0%
CTTCTATGTAGGTTCAGCCC+AGG - chr1_3:34234111-34234130 Msa0115360:CDS 50.0%
ATGTAGGTTCAGCCCAGGTA+TGG - chr1_3:34238968-34238987 Msa0115360:intron 50.0%
TGTAGGTTCAGCCCAGGTAT+GGG - chr1_3:34238969-34238988 Msa0115360:intron 50.0%
!! GGGATAAGGGTTGGTTGTTC+TGG - chr1_3:34238993-34239012 Msa0115360:intron 50.0%
!! GGGTTGGTTGTTCTGGTTGT+AGG - chr1_3:34239000-34239019 Msa0115360:intron 50.0%
ACATCTGCAGTTGGGAGACA+CGG + chr1_3:34239206-34239225 None:intergenic 50.0%
!!! TTGGTGCCGGTTTTGATCCT+TGG - chr1_3:34239482-34239501 Msa0115360:five_prime_UTR 50.0%
!!! TGGTGCCGGTTTTGATCCTT+GGG - chr1_3:34239483-34239502 Msa0115360:five_prime_UTR 50.0%
GGCATCCCAAGGATCAAAAC+CGG + chr1_3:34239491-34239510 None:intergenic 50.0%
TGACATGTAGGAGAGCCCCT+TGG + chr1_3:34232381-34232400 None:intergenic 55.0%
! GCTCTTTGGATAGGGGGTGT+AGG - chr1_3:34233594-34233613 Msa0115360:intron 55.0%
! TCTAGAGTAGGCCTGGTACG+GGG + chr1_3:34233649-34233668 None:intergenic 55.0%
! AGCCTCGTTTGAGACACCTG+TGG + chr1_3:34233726-34233745 None:intergenic 55.0%
GCCCATGTATGGGTGAGACA+AGG - chr1_3:34234127-34234146 Msa0115360:CDS 55.0%
CATGGTTCAGAGTTCGGCTG+AGG - chr1_3:34235961-34235980 Msa0115360:intron 55.0%
GCGGAATGATCGGATGTGCA+AGG + chr1_3:34236545-34236564 None:intergenic 55.0%
CGCAATCCCGACATTTGAGG+CGG + chr1_3:34236564-34236583 None:intergenic 55.0%
! TTTCGTGTTGCTGAGCGACG+AGG - chr1_3:34236607-34236626 Msa0115360:intron 55.0%
! TTCGTGTTGCTGAGCGACGA+GGG - chr1_3:34236608-34236627 Msa0115360:intron 55.0%
GCAGAGAGGAAGCCGATTGT+TGG - chr1_3:34236969-34236988 Msa0115360:intron 55.0%
GAAGCCGATTGTTGGACGGA+GGG - chr1_3:34236977-34236996 Msa0115360:intron 55.0%
! CGACATGTAGGAGCGCATCT+TGG + chr1_3:34237580-34237599 None:intergenic 55.0%
CACAAAGGTTGGGAGGAGCT+AGG + chr1_3:34237803-34237822 None:intergenic 55.0%
! GGCTCTTTGGATAGGGGTGT+AGG - chr1_3:34238427-34238446 Msa0115360:intron 55.0%
CTCATAGACCCCCTTGTACC+AGG - chr1_3:34238468-34238487 Msa0115360:intron 55.0%
AGAGTAGGCCTGGTACAAGG+GGG + chr1_3:34238479-34238498 None:intergenic 55.0%
CCCTTATCCCACCCATACCT+GGG + chr1_3:34238983-34239002 None:intergenic 55.0%
CCCAGGTATGGGTGGGATAA+GGG - chr1_3:34238980-34238999 Msa0115360:intron 55.0%
ACCCTTATCCCACCCATACC+TGG + chr1_3:34238984-34239003 None:intergenic 55.0%
GGTATGGGTGGGATAAGGGT+TGG - chr1_3:34238984-34239003 Msa0115360:intron 55.0%
TACGGGGGGGCCTATGAGAA+AGG + chr1_3:34233633-34233652 None:intergenic 60.0%
TAGAGTAGGCCTGGTACGGG+GGG + chr1_3:34233647-34233666 None:intergenic 60.0%
CTAGAGTAGGCCTGGTACGG+GGG + chr1_3:34233648-34233667 None:intergenic 60.0%
GTGTTTGTGCGGGGTTCACG+TGG + chr1_3:34235475-34235494 None:intergenic 60.0%
GCGAGAACGGAGAGCCACAA+TGG + chr1_3:34236454-34236473 None:intergenic 60.0%
GGAAGCCGATTGTTGGACGG+AGG - chr1_3:34236976-34236995 Msa0115360:intron 60.0%
AGGTTCAGCCCAGGTATGGG+TGG - chr1_3:34238972-34238991 Msa0115360:intron 60.0%
GGTTCAGCCCAGGTATGGGT+GGG - chr1_3:34238973-34238992 Msa0115360:intron 60.0%
GCCCAGGTATGGGTGGGATA+AGG - chr1_3:34238979-34238998 Msa0115360:intron 60.0%
AGAGTAGGCCTGGTACGGGG+GGG + chr1_3:34233646-34233665 None:intergenic 65.0%
GGGGTCACGCGTGAGCATGA+CGG + chr1_3:34236521-34236540 None:intergenic 65.0%
CTCATAGGCCCCCCCGTACC+AGG - chr1_3:34233635-34233654 Msa0115360:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34232149 34239510 34232149 ID=Msa0115360;Name=Msa0115360
chr1_3 mRNA 34232149 34239510 34232149 ID=Msa0115360-mRNA-1;Parent=Msa0115360;Name=Msa0115360-mRNA-1;_AED=0.29;_eAED=0.29;_QI=211|0.5|0.8|1|0.25|0.4|5|511|174
chr1_3 exon 34232149 34232685 34232149 ID=Msa0115360-mRNA-1:exon:10791;Parent=Msa0115360-mRNA-1
chr1_3 exon 34234040 34234322 34234040 ID=Msa0115360-mRNA-1:exon:10790;Parent=Msa0115360-mRNA-1
chr1_3 exon 34234422 34234568 34234422 ID=Msa0115360-mRNA-1:exon:10789;Parent=Msa0115360-mRNA-1
chr1_3 exon 34237234 34237241 34237234 ID=Msa0115360-mRNA-1:exon:10788;Parent=Msa0115360-mRNA-1
chr1_3 exon 34239239 34239510 34239239 ID=Msa0115360-mRNA-1:exon:10787;Parent=Msa0115360-mRNA-1
chr1_3 five_prime_UTR 34239300 34239510 34239300 ID=Msa0115360-mRNA-1:five_prime_utr;Parent=Msa0115360-mRNA-1
chr1_3 CDS 34239239 34239299 34239239 ID=Msa0115360-mRNA-1:cds;Parent=Msa0115360-mRNA-1
chr1_3 CDS 34237234 34237241 34237234 ID=Msa0115360-mRNA-1:cds;Parent=Msa0115360-mRNA-1
chr1_3 CDS 34234422 34234568 34234422 ID=Msa0115360-mRNA-1:cds;Parent=Msa0115360-mRNA-1
chr1_3 CDS 34234040 34234322 34234040 ID=Msa0115360-mRNA-1:cds;Parent=Msa0115360-mRNA-1
chr1_3 CDS 34232660 34232685 34232660 ID=Msa0115360-mRNA-1:cds;Parent=Msa0115360-mRNA-1
chr1_3 three_prime_UTR 34232149 34232659 34232149 ID=Msa0115360-mRNA-1:three_prime_utr;Parent=Msa0115360-mRNA-1
Gene Sequence

>Msa0115360

ATGCAAATATTGTTGTGTCCAAGGGGCTCTCCTACATGTCAAATTTTATTTGTTGAGGAAGCTGGTGGAATGCACAAGCAACAATGTCACACTTTTCGTAACTTAACTCACCTCGAGCTTGGGCTTATCTTTGCGTCCAATTGGCATACCAATTTGAACTGCTTGATAGAAGTGCTACGAGATTGTCCAAAGCTTGAGAATCTTACCCTTCATGAGTTTGATGGACATGGAGTTGGTGACGACATGTGCAAAAAACCACAAAATGTATTGGTTCCGGAATGTCTTTCCTCTCAATTAAAAACATGCACTCTTATAGGTTATAAAGGCACGTACGCTGGGATTCAATTTATAGCCTATATTTTAAAGAATGCGAAATTACTGAACACTGTGACGATTAAAGCCTCACAAGGGGATTTAAACATAAGGCACCAAACTCTGATGCGACTATTGTGGTGTCCAAGATGCGCTCCTACATGTCGAATTTTATTTGTTGAGGAAGGTTCAGCCCAGGTATGGGTGGGATAA
Protein sequence

>Msa0115360

MQILLCPRGSPTCQILFVEEAGGMHKQQCHTFRNLTHLELGLIFASNWHTNLNCLIEVLRDCPKLENLTLHEFDGHGVGDDMCKKPQNVLVPECLSSQLKTCTLIGYKGTYAGIQFIAYILKNAKLLNTVTIKASQGDLNIRHQTLMRLLWCPRCAPTCRILFVEEGSAQVWVG*