AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0878500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878500 MtrunA17_Chr6g0460991 99.338 151 1 0 1 151 1 151 5.50e-110 308
Msa0878500 MtrunA17_Chr1g0195701 50.435 115 56 1 1 114 1 115 4.07e-38 128
Msa0878500 MtrunA17_Chr7g0269271 50.000 108 53 1 1 107 1 108 4.80e-33 116
Msa0878500 MtrunA17_Chr6g0465301 46.032 126 65 2 1 123 1 126 4.48e-32 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878500 AT3G03773.1 72.185 151 41 1 1 151 1 150 1.79e-75 222
Msa0878500 AT3G03773.2 71.523 151 42 1 1 151 55 204 5.12e-74 220
Msa0878500 AT3G03773.3 75.221 113 27 1 1 113 1 112 4.42e-57 174
Msa0878500 AT4G02450.2 44.737 114 61 2 1 113 1 113 1.59e-29 108
Msa0878500 AT4G02450.1 44.737 114 61 2 1 113 1 113 1.62e-29 108

Find 58 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTACCTTCTCTGCTTCT+AGG 0.161269 6_1:+19605169 Msa0878500:CDS
CGCTGTGCCCAGAGAACTTC+TGG 0.233437 6_1:-19605072 None:intergenic
ATTTATTCCAATCAACTTTC+AGG 0.279329 6_1:-19605782 None:intergenic
AGCTTTAGCTTGGAACTTTA+CGG 0.318131 6_1:+19605210 Msa0878500:CDS
TGAAAGTTGATTGGAATAAA+TGG 0.325851 6_1:+19605784 Msa0878500:CDS
TAGGGTTGTAAAACTAAAAC+TGG 0.339082 6_1:+19605672 Msa0878500:intron
CGTCCATCATCGTCAGATAT+TGG 0.361939 6_1:-19608449 None:intergenic
TTCTGTGAAGTGTGAGCCTC+AGG 0.376022 6_1:+19605143 Msa0878500:CDS
ATAAAATCTGAGTGGTGCTT+TGG 0.378229 6_1:+19609624 Msa0878500:three_prime_UTR
GTCGCCATCCAGAAGTTCTC+TGG 0.391191 6_1:+19605064 Msa0878500:intron
TCAATTGTTGTTGTTAGAGT+TGG 0.394547 6_1:+19609796 Msa0878500:three_prime_UTR
TTCAAGGAGATGGAATTATA+TGG 0.406270 6_1:+19609530 Msa0878500:three_prime_UTR
ATTATATGGAAGTGTTATAT+AGG 0.409310 6_1:+19609544 Msa0878500:three_prime_UTR
CAAAAGTTGATGAAGCTTCA+AGG 0.422552 6_1:+19609514 Msa0878500:three_prime_UTR
CACCATACCTGAAAGTTGAT+TGG 0.430676 6_1:+19605775 Msa0878500:CDS
AAGTTCCAAGCTAAAGCTAT+AGG 0.431266 6_1:-19605205 None:intergenic
CAATTGTTGTTGTTAGAGTT+GGG 0.432885 6_1:+19609797 Msa0878500:three_prime_UTR
TAACAACAACAATTGATGTC+AGG 0.435310 6_1:-19609789 None:intergenic
CTGGGCACAGCGTTCTGGTA+AGG 0.451788 6_1:+19605083 Msa0878500:CDS
TTCCAATCAACTTTCAGGTA+TGG 0.454166 6_1:-19605777 None:intergenic
GACAAAGAGGTTGGTGGAAA+AGG 0.458246 6_1:+19605727 Msa0878500:CDS
TGGAAGTGTTATATAGGTGC+AGG 0.463244 6_1:+19609550 Msa0878500:three_prime_UTR
TTGTTGTTAGAGTTGGGAAT+AGG 0.467711 6_1:+19609803 Msa0878500:three_prime_UTR
TCTTGCAGATCTCCCTGACT+TGG 0.470280 6_1:+19609456 Msa0878500:intron
GTTTACCTTCTCTGCTTCTA+GGG 0.475165 6_1:+19605170 Msa0878500:CDS
ACAGAAACATCCTTGGCATC+AGG 0.484531 6_1:-19605126 None:intergenic
TTGATGAAGCTTCAAGGAGA+TGG 0.499101 6_1:+19609520 Msa0878500:three_prime_UTR
TGAATCCTATAGCTTTAGCT+TGG 0.502986 6_1:+19605200 Msa0878500:CDS
TCAACTTTCAGGTATGGTGC+AGG 0.517519 6_1:-19605771 None:intergenic
AGATCTCCCTGACTTGGAAA+AGG 0.525126 6_1:+19609462 Msa0878500:intron
TTGACTCTTTGATGTGTCGT+TGG 0.526952 6_1:-19603897 None:intergenic
CCCTGACTTGGAAAAGGCTA+GGG 0.528158 6_1:+19609468 Msa0878500:CDS
TCCCTGACTTGGAAAAGGCT+AGG 0.531404 6_1:+19609467 Msa0878500:CDS
GGAATAGGTTGAGCCGAGCT+AGG 0.538504 6_1:+19609818 Msa0878500:three_prime_UTR
CATCAGGTAGAGCAATAGTC+AGG 0.541944 6_1:-19605110 None:intergenic
GATGAAAGCAGTGACGATGA+AGG 0.545274 6_1:+19608589 Msa0878500:CDS
ACACTTCACAGAAACATCCT+TGG 0.552534 6_1:-19605133 None:intergenic
GATAGTCTACAAGTCAAACT+TGG 0.553100 6_1:-19609852 None:intergenic
CAATATCTGACGATGATGGA+CGG 0.555023 6_1:+19608450 Msa0878500:CDS
TTCAGAAAGGACAAAGAGGT+TGG 0.555066 6_1:+19605718 Msa0878500:CDS
GAACCAATATCTGACGATGA+TGG 0.555270 6_1:+19608446 Msa0878500:CDS
AACAACAACAATTGATGTCA+GGG 0.560965 6_1:-19609788 None:intergenic
TCTCACTCAGCTCAAGAATG+AGG 0.568493 6_1:+19603943 Msa0878500:exon
AGAAAGGACAAAGAGGTTGG+TGG 0.573743 6_1:+19605721 Msa0878500:CDS
AATATCTGACGATGATGGAC+GGG 0.575138 6_1:+19608451 Msa0878500:CDS
TCGCCATCCAGAAGTTCTCT+GGG 0.582774 6_1:+19605065 Msa0878500:CDS
TTGAACCCTAGAAGCAGAGA+AGG 0.586114 6_1:-19605175 None:intergenic
ATACTATGCTCAATTCAGAA+AGG 0.596991 6_1:+19605705 Msa0878500:CDS
GTGCCCAGAGAACTTCTGGA+TGG 0.615220 6_1:-19605068 None:intergenic
GGAAGTGTTATATAGGTGCA+GGG 0.618632 6_1:+19609551 Msa0878500:three_prime_UTR
TCTGTGAAGTGTGAGCCTCA+GGG 0.627276 6_1:+19605144 Msa0878500:CDS
GAGCCGAGCTAGGCTATGCA+AGG 0.630588 6_1:+19609828 Msa0878500:three_prime_UTR
GGACCTTGCATAGCCTAGCT+CGG 0.631296 6_1:-19609831 None:intergenic
TATTGCTCTACCTGATGCCA+AGG 0.634051 6_1:+19605116 Msa0878500:CDS
TTACGGATCGATTCAACCTG+AGG 0.640397 6_1:+19605227 Msa0878500:CDS
TCAATTCAGAAAGGACAAAG+AGG 0.648365 6_1:+19605714 Msa0878500:CDS
CTGTATATATAAAATCTGAG+TGG 0.718139 6_1:+19609616 Msa0878500:three_prime_UTR
GAGAAGGTAAACAAACCCTG+AGG 0.771648 6_1:-19605159 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTATTTTTTAAAAA+AGG + chr6_1:19609088-19609107 Msa0878500:intron 0.0%
!! AATAACAAAAAAATTGAAAT+GGG - chr6_1:19604051-19604070 None:intergenic 10.0%
!! TAATAACAAAAAAATTGAAA+TGG - chr6_1:19604052-19604071 None:intergenic 10.0%
!!! TTTATTATGTAATTGAATTT+TGG + chr6_1:19604625-19604644 Msa0878500:intron 10.0%
!!! AATTAATTTGATTTGATTTT+TGG + chr6_1:19605027-19605046 Msa0878500:intron 10.0%
!!! TTATCTATTTAATTTAGATT+CGG - chr6_1:19607229-19607248 None:intergenic 10.0%
!!! AATATTTTCTCAAATTAAAT+AGG + chr6_1:19608264-19608283 Msa0878500:intron 10.0%
!! TATATTATGAAATAAAGTAA+GGG - chr6_1:19609027-19609046 None:intergenic 10.0%
!! ATATATTATGAAATAAAGTA+AGG - chr6_1:19609028-19609047 None:intergenic 10.0%
!!! TTACTTTATTTCATAATATA+TGG + chr6_1:19609027-19609046 Msa0878500:intron 10.0%
!!! TTTTCATCATTATTTTTACA+AGG - chr6_1:19604114-19604133 None:intergenic 15.0%
!! TTTATTAAGTAATTGAATAC+TGG + chr6_1:19604411-19604430 Msa0878500:intron 15.0%
!!! ATCATAAAGTATTTTCTAAT+TGG + chr6_1:19605845-19605864 Msa0878500:intron 15.0%
!! TAAGATACTAAGATTAAAAA+TGG + chr6_1:19606052-19606071 Msa0878500:intron 15.0%
!! CAAAAGATATTAAATAAACA+AGG - chr6_1:19606387-19606406 None:intergenic 15.0%
!!! ATAAAAAAATGTTTTTCATC+TGG + chr6_1:19606734-19606753 Msa0878500:intron 15.0%
!!! TAATGTGCATATTTATTTTT+TGG - chr6_1:19606798-19606817 None:intergenic 15.0%
!! TATACTTAAGATATGTAAAA+AGG + chr6_1:19606839-19606858 Msa0878500:intron 15.0%
!!! ATAAGCTATTTCTATATTAA+AGG + chr6_1:19608813-19608832 Msa0878500:intron 15.0%
!!! ATTCTATTTTTCTTTAACTA+TGG + chr6_1:19609181-19609200 Msa0878500:intron 15.0%
!! TTTACATGTTACAAACAAAT+GGG - chr6_1:19604165-19604184 None:intergenic 20.0%
!! TTATTGAGTATATTGAATGT+TGG + chr6_1:19604210-19604229 Msa0878500:intron 20.0%
!!! TGCTGATATGATTTTAATAA+TGG + chr6_1:19604279-19604298 Msa0878500:intron 20.0%
!! CAGATTATTGAAACTTTATA+AGG - chr6_1:19604585-19604604 None:intergenic 20.0%
!! CAGAATATTGAAATGTTATA+GGG - chr6_1:19604786-19604805 None:intergenic 20.0%
!! TCAGAATATTGAAATGTTAT+AGG - chr6_1:19604787-19604806 None:intergenic 20.0%
!! TATCGAAATATTTGATATTG+CGG + chr6_1:19604854-19604873 Msa0878500:intron 20.0%
!! AAAAAAAAATCTTTCGACTA+GGG - chr6_1:19605004-19605023 None:intergenic 20.0%
!! AAAAAAAAAATCTTTCGACT+AGG - chr6_1:19605005-19605024 None:intergenic 20.0%
!!! ACGTAATATAAAGGTTTTAA+AGG + chr6_1:19605343-19605362 Msa0878500:intron 20.0%
!!! AAGATTAACCCTTATTTATA+GGG + chr6_1:19605947-19605966 Msa0878500:intron 20.0%
!! GTTTCTAATCATAATTAAAC+AGG + chr6_1:19605977-19605996 Msa0878500:intron 20.0%
!! TATATTTGTAAGTTTCTTTG+TGG + chr6_1:19606446-19606465 Msa0878500:intron 20.0%
!! ATATTTGTAAGTTTCTTTGT+GGG + chr6_1:19606447-19606466 Msa0878500:intron 20.0%
!!! ATTACCAACAAATATCATTT+TGG - chr6_1:19608678-19608697 None:intergenic 20.0%
!! TTCTTTAACTATGGATTTAA+AGG + chr6_1:19609190-19609209 Msa0878500:intron 20.0%
!!! ATTATATGGAAGTGTTATAT+AGG + chr6_1:19609544-19609563 Msa0878500:three_prime_UTR 20.0%
!! TTACAAGGATGTGATTTTTA+TGG - chr6_1:19604099-19604118 None:intergenic 25.0%
! CTTTACATGTTACAAACAAA+TGG - chr6_1:19604166-19604185 None:intergenic 25.0%
!! AATTGTGGTTTTTGATATTG+TGG + chr6_1:19604238-19604257 Msa0878500:intron 25.0%
! CAGAATATTGAAACTCTATA+GGG - chr6_1:19604381-19604400 None:intergenic 25.0%
! TCAGAATATTGAAACTCTAT+AGG - chr6_1:19604382-19604401 None:intergenic 25.0%
!!! AACATTTTGATATGATTCTC+CGG - chr6_1:19604461-19604480 None:intergenic 25.0%
! ATATCAAAATGTTGTTGACA+CGG + chr6_1:19604468-19604487 Msa0878500:intron 25.0%
!!! TGAATTTTGGTTTTGAAATG+TGG + chr6_1:19604638-19604657 Msa0878500:intron 25.0%
!! AAATGTGGTTTTTGATATTG+TGG + chr6_1:19604653-19604672 Msa0878500:intron 25.0%
! TTTGATTATGTACATACTTG+TGG + chr6_1:19605295-19605314 Msa0878500:intron 25.0%
! TATATCCTAGTTTCAAATTG+TGG + chr6_1:19605319-19605338 Msa0878500:intron 25.0%
! AATTGTGGTACGTAATATAA+AGG + chr6_1:19605334-19605353 Msa0878500:intron 25.0%
!!! TGCATTTTTTCACATTATCA+AGG + chr6_1:19605409-19605428 Msa0878500:intron 25.0%
! AACTAAAACAATTCGTAAAG+TGG - chr6_1:19605585-19605604 None:intergenic 25.0%
!!! TTCCTTATCATGTTTTGAAA+AGG + chr6_1:19605611-19605630 Msa0878500:intron 25.0%
!! AACCTTTTCAAAACATGATA+AGG - chr6_1:19605616-19605635 None:intergenic 25.0%
!!! TTATCATGTTTTGAAAAGGT+TGG + chr6_1:19605615-19605634 Msa0878500:intron 25.0%
! ATATTGTCATTGTTGTATCT+AGG + chr6_1:19605653-19605672 Msa0878500:intron 25.0%
! TATTGTCATTGTTGTATCTA+GGG + chr6_1:19605654-19605673 Msa0878500:intron 25.0%
! ATTTATTCCAATCAACTTTC+AGG - chr6_1:19605785-19605804 None:intergenic 25.0%
!! TGAAAGTTGATTGGAATAAA+TGG + chr6_1:19605784-19605803 Msa0878500:CDS 25.0%
! CATGAACATTTATATCTGTA+TGG + chr6_1:19605894-19605913 Msa0878500:intron 25.0%
!! GAAGATTAACCCTTATTTAT+AGG + chr6_1:19605946-19605965 Msa0878500:intron 25.0%
!! TATACCTTTTTACGTCATTT+CGG + chr6_1:19606215-19606234 Msa0878500:intron 25.0%
! TATTTGTAAGTTTCTTTGTG+GGG + chr6_1:19606448-19606467 Msa0878500:intron 25.0%
! ATTAGGATTATAACTGTGTT+AGG + chr6_1:19606491-19606510 Msa0878500:intron 25.0%
! TGTTGCCAATGATATATAAA+TGG + chr6_1:19606524-19606543 Msa0878500:intron 25.0%
! AAAGGCCATTTATATATCAT+TGG - chr6_1:19606532-19606551 None:intergenic 25.0%
! AGAGAAATCCAATTTAATTG+CGG + chr6_1:19606682-19606701 Msa0878500:intron 25.0%
! TTATTGTACCGCAATTAAAT+TGG - chr6_1:19606693-19606712 None:intergenic 25.0%
!! AAAAAATGTTTTTCATCTGG+TGG + chr6_1:19606737-19606756 Msa0878500:intron 25.0%
! AGTATATAATATCGTGTCAT+CGG - chr6_1:19606825-19606844 None:intergenic 25.0%
!!! GATGTATAGTGTTGTTTTTA+CGG + chr6_1:19606995-19607014 Msa0878500:intron 25.0%
!! TTTTGGATTAAGCAAGATTT+TGG + chr6_1:19607334-19607353 Msa0878500:intron 25.0%
! CAACTTGAGTTCAAATATTA+TGG + chr6_1:19607367-19607386 Msa0878500:intron 25.0%
! TCTAATATGGTAAAAACTGA+GGG - chr6_1:19607607-19607626 None:intergenic 25.0%
!! TAAGTAAATAATCAAGTTGC+AGG - chr6_1:19607739-19607758 None:intergenic 25.0%
! ATTTACTTAGATGCAAAAGA+TGG + chr6_1:19607750-19607769 Msa0878500:intron 25.0%
!! TGAACAGAAAAGATTTTACA+AGG - chr6_1:19608047-19608066 None:intergenic 25.0%
! TAATTAAAGTAGAGATGCAA+TGG - chr6_1:19608633-19608652 None:intergenic 25.0%
! CTTACCAAAATGATATTTGT+TGG + chr6_1:19608671-19608690 Msa0878500:intron 25.0%
! ATATGCTCTATGAAATATGT+AGG + chr6_1:19608717-19608736 Msa0878500:intron 25.0%
!! AAATAAAGTAAGGGTTTGTT+TGG - chr6_1:19609018-19609037 None:intergenic 25.0%
! AGACAATTATCATTTATGTC+AGG - chr6_1:19609439-19609458 None:intergenic 25.0%
!! CACTCAGATTTTATATATAC+AGG - chr6_1:19609618-19609637 None:intergenic 25.0%
! CTGTATATATAAAATCTGAG+TGG + chr6_1:19609616-19609635 Msa0878500:three_prime_UTR 25.0%
!!! CTTGTTTTTCTTTGATTACA+TGG + chr6_1:19609661-19609680 Msa0878500:three_prime_UTR 25.0%
!!! ACTATCATCGACTTATTTTT+AGG + chr6_1:19609869-19609888 Msa0878500:three_prime_UTR 25.0%
TTCAGTGAAAGTAAAACGAA+GGG - chr6_1:19603979-19603998 None:intergenic 30.0%
TTTCAGTGAAAGTAAAACGA+AGG - chr6_1:19603980-19603999 None:intergenic 30.0%
!!! TGAATGTTGGTTTTGAATTG+TGG + chr6_1:19604223-19604242 Msa0878500:intron 30.0%
!!! TGAATACTGGTTTTAAATCG+TGG + chr6_1:19604424-19604443 Msa0878500:intron 30.0%
AATCGTGGTATTTGATATTC+CGG + chr6_1:19604439-19604458 Msa0878500:intron 30.0%
ATCAAAAACTGTTGATGTTG+CGG + chr6_1:19604527-19604546 Msa0878500:intron 30.0%
! GTGAGTGATCTTTTCTTAAA+TGG + chr6_1:19605249-19605268 Msa0878500:intron 30.0%
TGAAAAAATGCAGTCAAATG+TGG - chr6_1:19605401-19605420 None:intergenic 30.0%
TATGAAAAACTTTCATAGCC+CGG - chr6_1:19605479-19605498 None:intergenic 30.0%
AAAACAATTCGTAAAGTGGA+CGG - chr6_1:19605581-19605600 None:intergenic 30.0%
ACAATGACAATATTTCAGAC+AGG - chr6_1:19605646-19605665 None:intergenic 30.0%
TAGGGTTGTAAAACTAAAAC+TGG + chr6_1:19605672-19605691 Msa0878500:intron 30.0%
ATACTATGCTCAATTCAGAA+AGG + chr6_1:19605705-19605724 Msa0878500:CDS 30.0%
ACTAACATGTAGAAATCACA+TGG - chr6_1:19605924-19605943 None:intergenic 30.0%
CCGTTTATCCCTATAAATAA+GGG - chr6_1:19605958-19605977 None:intergenic 30.0%
! CCCTTATTTATAGGGATAAA+CGG + chr6_1:19605955-19605974 Msa0878500:intron 30.0%
ACCGTTTATCCCTATAAATA+AGG - chr6_1:19605959-19605978 None:intergenic 30.0%
TCTAACAGTCATTATGATCT+TGG + chr6_1:19606131-19606150 Msa0878500:intron 30.0%
ATTTGTAAGTTTCTTTGTGG+GGG + chr6_1:19606449-19606468 Msa0878500:intron 30.0%
GTTCACTACAATTAGGATAA+AGG - chr6_1:19606550-19606569 None:intergenic 30.0%
AGACTAAGTTCACTACAATT+AGG - chr6_1:19606557-19606576 None:intergenic 30.0%
ATTGAAAGCTCTCTAACAAA+AGG + chr6_1:19606656-19606675 Msa0878500:intron 30.0%
TTGAAAGCTCTCTAACAAAA+GGG + chr6_1:19606657-19606676 Msa0878500:intron 30.0%
TAAGATATGTAAAAAGGCTG+AGG + chr6_1:19606845-19606864 Msa0878500:intron 30.0%
AAGATATGTAAAAAGGCTGA+GGG + chr6_1:19606846-19606865 Msa0878500:intron 30.0%
GTTCAGAATCCATTTATCAA+TGG - chr6_1:19607023-19607042 None:intergenic 30.0%
TGAGTTCAAATATTATGGTC+TGG + chr6_1:19607372-19607391 Msa0878500:intron 30.0%
AAAAGTTGTTGGAAGTTGAA+TGG + chr6_1:19607530-19607549 Msa0878500:intron 30.0%
AAAGTTGTTGGAAGTTGAAT+GGG + chr6_1:19607531-19607550 Msa0878500:intron 30.0%
GTCTAATATGGTAAAAACTG+AGG - chr6_1:19607608-19607627 None:intergenic 30.0%
!! TTCATTTTAGTCATCTCTAG+TGG + chr6_1:19607799-19607818 Msa0878500:intron 30.0%
! ATGTTTTGTGCTTTACTTCT+TGG + chr6_1:19607940-19607959 Msa0878500:intron 30.0%
GGTAATAGTATATAGAGACA+AGG + chr6_1:19607961-19607980 Msa0878500:intron 30.0%
!!! ACCATGTTTCTAGTTTTCAA+AGG + chr6_1:19608111-19608130 Msa0878500:intron 30.0%
! ACCTTTGAAAACTAGAAACA+TGG - chr6_1:19608115-19608134 None:intergenic 30.0%
! ACCTTGCTTTCTTATTTGTA+TGG + chr6_1:19608340-19608359 Msa0878500:intron 30.0%
! CCTTGCTTTCTTATTTGTAT+GGG + chr6_1:19608341-19608360 Msa0878500:intron 30.0%
TTATTTGTATGGGTTTCTTG+AGG + chr6_1:19608351-19608370 Msa0878500:intron 30.0%
TGTCTGATTAAAGTTTCTGT+TGG + chr6_1:19608410-19608429 Msa0878500:intron 30.0%
ATTGAACAAGATTAAGTACC+TGG - chr6_1:19608535-19608554 None:intergenic 30.0%
CTTATGCATAAGCACTTATA+TGG - chr6_1:19608798-19608817 None:intergenic 30.0%
! AGTCAAATTGTTTTCATGCA+AGG + chr6_1:19608845-19608864 Msa0878500:intron 30.0%
ACTAAGCTGAAAACAGTTTA+TGG + chr6_1:19608907-19608926 Msa0878500:intron 30.0%
! GCTTATTTGAGTTTATCTAC+TGG - chr6_1:19608991-19609010 None:intergenic 30.0%
!!! GCAAAATAGTGGATTTTCAT+TGG - chr6_1:19609254-19609273 None:intergenic 30.0%
TTGAAACTGATAGTATGACA+TGG + chr6_1:19609302-19609321 Msa0878500:intron 30.0%
TATCATTTATGTCAGGTGTA+AGG - chr6_1:19609432-19609451 None:intergenic 30.0%
TTCAAGGAGATGGAATTATA+TGG + chr6_1:19609530-19609549 Msa0878500:three_prime_UTR 30.0%
AACAACAACAATTGATGTCA+GGG - chr6_1:19609791-19609810 None:intergenic 30.0%
TAACAACAACAATTGATGTC+AGG - chr6_1:19609792-19609811 None:intergenic 30.0%
! TCAATTGTTGTTGTTAGAGT+TGG + chr6_1:19609796-19609815 Msa0878500:three_prime_UTR 30.0%
! CAATTGTTGTTGTTAGAGTT+GGG + chr6_1:19609797-19609816 Msa0878500:three_prime_UTR 30.0%
!!! CTTATTTTTAGGCATGAATC+TGG + chr6_1:19609880-19609899 Msa0878500:three_prime_UTR 30.0%
TGAAAGTAAAACGAAGGGAA+AGG - chr6_1:19603974-19603993 None:intergenic 35.0%
! TTTTAATAATGGCCGTGTTG+TGG + chr6_1:19604290-19604309 Msa0878500:intron 35.0%
TTGTGGAGAATTGTGATCAA+AGG + chr6_1:19604670-19604689 Msa0878500:intron 35.0%
! AAGAATTTTGAACCGCAACA+CGG - chr6_1:19604720-19604739 None:intergenic 35.0%
TTGCGGAAAATCACATTCAA+AGG + chr6_1:19604871-19604890 Msa0878500:intron 35.0%
AAAATCACATTCAAAGGCAG+CGG + chr6_1:19604877-19604896 Msa0878500:intron 35.0%
!! TGAATCCTATAGCTTTAGCT+TGG + chr6_1:19605200-19605219 Msa0878500:CDS 35.0%
AAGTTCCAAGCTAAAGCTAT+AGG - chr6_1:19605208-19605227 None:intergenic 35.0%
!! AGCTTTAGCTTGGAACTTTA+CGG + chr6_1:19605210-19605229 Msa0878500:CDS 35.0%
! ACGTACCACAATTTGAAACT+AGG - chr6_1:19605327-19605346 None:intergenic 35.0%
CAATCACAATGTAGTTGAAG+AGG - chr6_1:19605369-19605388 None:intergenic 35.0%
! CCATTTTACCAATTGTTGTC+CGG + chr6_1:19605457-19605476 Msa0878500:intron 35.0%
! CATTTTACCAATTGTTGTCC+GGG + chr6_1:19605458-19605477 Msa0878500:intron 35.0%
! TGAAAAAGTGCAGACAAATG+TGG - chr6_1:19605526-19605545 None:intergenic 35.0%
AAACAATTCGTAAAGTGGAC+GGG - chr6_1:19605580-19605599 None:intergenic 35.0%
!!! CATGTTTTGAAAAGGTTGGA+TGG + chr6_1:19605619-19605638 Msa0878500:intron 35.0%
TCAATTCAGAAAGGACAAAG+AGG + chr6_1:19605714-19605733 Msa0878500:CDS 35.0%
! TTCCAATCAACTTTCAGGTA+TGG - chr6_1:19605780-19605799 None:intergenic 35.0%
AACAGTCATTATGATCTTGG+AGG + chr6_1:19606134-19606153 Msa0878500:intron 35.0%
AGAAATAAGCCAGGTTTGAT+AGG - chr6_1:19606168-19606187 None:intergenic 35.0%
AGAATGAGTTACTGCAGAAA+GGG - chr6_1:19606289-19606308 None:intergenic 35.0%
TAGAATGAGTTACTGCAGAA+AGG - chr6_1:19606290-19606309 None:intergenic 35.0%
TTTGTAAGTTTCTTTGTGGG+GGG + chr6_1:19606450-19606469 Msa0878500:intron 35.0%
! ACTTAGTCTAGAATGTTAGC+AGG + chr6_1:19606568-19606587 Msa0878500:intron 35.0%
! TCTAGAATGTTAGCAGGAAT+GGG + chr6_1:19606574-19606593 Msa0878500:intron 35.0%
ATTACGCAATGAGGAAACTT+GGG - chr6_1:19606629-19606648 None:intergenic 35.0%
ATGAGTAAGATTACGCAATG+AGG - chr6_1:19606638-19606657 None:intergenic 35.0%
TCACTAGCTCATAACTAATC+AGG - chr6_1:19606939-19606958 None:intergenic 35.0%
AGTAGGATCAATGACTATAC+TGG + chr6_1:19607121-19607140 Msa0878500:intron 35.0%
TTCTTCACCAGAGATAACAA+TGG - chr6_1:19607187-19607206 None:intergenic 35.0%
ATTGTTATCTCTGGTGAAGA+AGG + chr6_1:19607186-19607205 Msa0878500:intron 35.0%
TCCTTAACACAACAAACAGA+TGG + chr6_1:19607431-19607450 Msa0878500:intron 35.0%
CCTTAACACAACAAACAGAT+GGG + chr6_1:19607432-19607451 Msa0878500:intron 35.0%
GCGATGTTAAGAAAAGTTGT+TGG + chr6_1:19607519-19607538 Msa0878500:intron 35.0%
ACCTATAGCACACAATATCA+AGG + chr6_1:19607556-19607575 Msa0878500:intron 35.0%
TATGGTAAAAACTGAGGGTA+AGG - chr6_1:19607602-19607621 None:intergenic 35.0%
CGTCAAATTAGCGTCTAATA+TGG - chr6_1:19607620-19607639 None:intergenic 35.0%
GCTAATTTGACGACTATACT+CGG + chr6_1:19607628-19607647 Msa0878500:intron 35.0%
TGACAATATCTAGTATAGCC+TGG - chr6_1:19607657-19607676 None:intergenic 35.0%
TAAATAGGACCTTAGCATCA+TGG + chr6_1:19608279-19608298 Msa0878500:intron 35.0%
CCCATACAAATAAGAAAGCA+AGG - chr6_1:19608344-19608363 None:intergenic 35.0%
! TTTCATCTTTTGCAGTTTGC+TGG + chr6_1:19608559-19608578 Msa0878500:intron 35.0%
TGAAATATGTAGGCTCAGTT+TGG + chr6_1:19608727-19608746 Msa0878500:intron 35.0%
! AAACAGTTGTTTGATTTCGC+AGG - chr6_1:19609160-19609179 None:intergenic 35.0%
!! AGTGGATTTTCATTGGATGT+CGG - chr6_1:19609247-19609266 None:intergenic 35.0%
TGAGTAATGTGGCAAAATAG+TGG - chr6_1:19609265-19609284 None:intergenic 35.0%
CTCTCAAAAGTTGAGTAATG+TGG - chr6_1:19609276-19609295 None:intergenic 35.0%
ATTTATGTCAGGTGTAAGGT+GGG - chr6_1:19609428-19609447 None:intergenic 35.0%
!! CAAAAGTTGATGAAGCTTCA+AGG + chr6_1:19609514-19609533 Msa0878500:three_prime_UTR 35.0%
ATAAAATCTGAGTGGTGCTT+TGG + chr6_1:19609624-19609643 Msa0878500:three_prime_UTR 35.0%
! GCTTTCTTTGTTGTGAATGT+TGG + chr6_1:19609699-19609718 Msa0878500:intron 35.0%
CAGGGTTGTATAATCTCAAA+AGG - chr6_1:19609773-19609792 None:intergenic 35.0%
! TTGTTGTTAGAGTTGGGAAT+AGG + chr6_1:19609803-19609822 Msa0878500:three_prime_UTR 35.0%
GATAGTCTACAAGTCAAACT+TGG - chr6_1:19609855-19609874 None:intergenic 35.0%
!! TGCCAACTGAGCTTTTAAAA+AGG - chr6_1:19609906-19609925 None:intergenic 35.0%
TTGACTCTTTGATGTGTCGT+TGG - chr6_1:19603900-19603919 None:intergenic 40.0%
TTGTGGAGAATCACGATCAA+AGG + chr6_1:19604255-19604274 Msa0878500:intron 40.0%
TGTTGACACGGTTTCAATGA+TGG + chr6_1:19604480-19604499 Msa0878500:intron 40.0%
!!! TGCTGATATGGTTTTGACGA+TGG + chr6_1:19604694-19604713 Msa0878500:intron 40.0%
CTTCAATGAAGTCTGTGTTC+AGG + chr6_1:19604906-19604925 Msa0878500:intron 40.0%
AGTCTAAGTCGCAACATCAA+AGG - chr6_1:19604956-19604975 None:intergenic 40.0%
ACACTTCACAGAAACATCCT+TGG - chr6_1:19605136-19605155 None:intergenic 40.0%
TGTTTACCTTCTCTGCTTCT+AGG + chr6_1:19605169-19605188 Msa0878500:CDS 40.0%
GTTTACCTTCTCTGCTTCTA+GGG + chr6_1:19605170-19605189 Msa0878500:CDS 40.0%
AAGAAAAGATCACTCACCTC+AGG - chr6_1:19605246-19605265 None:intergenic 40.0%
CTACATTGTGATTGCAACTG+CGG + chr6_1:19605375-19605394 Msa0878500:intron 40.0%
CCGGACAACAATTGGTAAAA+TGG - chr6_1:19605460-19605479 None:intergenic 40.0%
CCACATTGTGATTGCAATTG+CGG + chr6_1:19605500-19605519 Msa0878500:intron 40.0%
TTCAGAAAGGACAAAGAGGT+TGG + chr6_1:19605718-19605737 Msa0878500:CDS 40.0%
! CACCATACCTGAAAGTTGAT+TGG + chr6_1:19605775-19605794 Msa0878500:CDS 40.0%
GTTCAATTGCCTATCAAACC+TGG + chr6_1:19606156-19606175 Msa0878500:intron 40.0%
ATGTGTTGGAGAAATAAGCC+AGG - chr6_1:19606177-19606196 None:intergenic 40.0%
! TGGCTTATTTCTCCAACACA+TGG + chr6_1:19606176-19606195 Msa0878500:intron 40.0%
CAAGCCGAAATGACGTAAAA+AGG - chr6_1:19606222-19606241 None:intergenic 40.0%
AAACAAAATGAGCATGGCTG+AGG - chr6_1:19606254-19606273 None:intergenic 40.0%
CTGCTCAAACAAAATGAGCA+TGG - chr6_1:19606260-19606279 None:intergenic 40.0%
ATATGCAGTGACTACATTGC+AGG - chr6_1:19606351-19606370 None:intergenic 40.0%
TCATAAACTGCCACATGTGA+CGG - chr6_1:19606414-19606433 None:intergenic 40.0%
TTGTAAGTTTCTTTGTGGGG+GGG + chr6_1:19606451-19606470 Msa0878500:intron 40.0%
! GTCTAGAATGTTAGCAGGAA+TGG + chr6_1:19606573-19606592 Msa0878500:intron 40.0%
GATTACGCAATGAGGAAACT+TGG - chr6_1:19606630-19606649 None:intergenic 40.0%
GTTCTGATCAAACTCAAGGT+AGG - chr6_1:19606917-19606936 None:intergenic 40.0%
! TCAGGTTCTGATCAAACTCA+AGG - chr6_1:19606921-19606940 None:intergenic 40.0%
TTTACGGCGCCATTGATAAA+TGG + chr6_1:19607011-19607030 Msa0878500:intron 40.0%
! TTAGCTGCTTTGGCTAGTAT+AGG + chr6_1:19607051-19607070 Msa0878500:intron 40.0%
! TAGCTGCTTTGGCTAGTATA+GGG + chr6_1:19607052-19607071 Msa0878500:intron 40.0%
AGGATCAATGACTATACTGG+TGG + chr6_1:19607124-19607143 Msa0878500:intron 40.0%
TCACCAGAGATAACAATGGT+AGG - chr6_1:19607183-19607202 None:intergenic 40.0%
! AAGAGTGACTGCTGTGATTT+TGG + chr6_1:19607317-19607336 Msa0878500:intron 40.0%
TTGTTGTGTTAAGGAGAGGA+GGG - chr6_1:19607426-19607445 None:intergenic 40.0%
! TTTGTTGTGTTAAGGAGAGG+AGG - chr6_1:19607427-19607446 None:intergenic 40.0%
!! CTGTTTGTTGTGTTAAGGAG+AGG - chr6_1:19607430-19607449 None:intergenic 40.0%
!! CCCATCTGTTTGTTGTGTTA+AGG - chr6_1:19607435-19607454 None:intergenic 40.0%
GCCTTGATATTGTGTGCTAT+AGG - chr6_1:19607560-19607579 None:intergenic 40.0%
AGAAGAAATGTGACAAGCAG+TGG - chr6_1:19607716-19607735 None:intergenic 40.0%
TCATCTCTAGTGGTAGAAAG+TGG + chr6_1:19607809-19607828 Msa0878500:intron 40.0%
! GAAAAATAGGTAGTGGTCAG+TGG - chr6_1:19607837-19607856 None:intergenic 40.0%
AGAAGGGGAAAAATAGGTAG+TGG - chr6_1:19607844-19607863 None:intergenic 40.0%
AGAGACAAGGAGACTAACAA+TGG + chr6_1:19607974-19607993 Msa0878500:intron 40.0%
GAACCAATATCTGACGATGA+TGG + chr6_1:19608446-19608465 Msa0878500:CDS 40.0%
!! CAATATCTGACGATGATGGA+CGG + chr6_1:19608450-19608469 Msa0878500:CDS 40.0%
!! AATATCTGACGATGATGGAC+GGG + chr6_1:19608451-19608470 Msa0878500:CDS 40.0%
GTAGAGTTTAACAAACCTCC+AGG + chr6_1:19608514-19608533 Msa0878500:intron 40.0%
GAACAAGATTAAGTACCTGG+AGG - chr6_1:19608532-19608551 None:intergenic 40.0%
AACCACTTGTGAGGCTATTT+GGG - chr6_1:19608964-19608983 None:intergenic 40.0%
AAACCACTTGTGAGGCTATT+TGG - chr6_1:19608965-19608984 None:intergenic 40.0%
ACTGGTATAAACCACTTGTG+AGG - chr6_1:19608973-19608992 None:intergenic 40.0%
CATTTATGTCAGGTGTAAGG+TGG - chr6_1:19609429-19609448 None:intergenic 40.0%
TTGATGAAGCTTCAAGGAGA+TGG + chr6_1:19609520-19609539 Msa0878500:three_prime_UTR 40.0%
!! TGGAAGTGTTATATAGGTGC+AGG + chr6_1:19609550-19609569 Msa0878500:three_prime_UTR 40.0%
!! GGAAGTGTTATATAGGTGCA+GGG + chr6_1:19609551-19609570 Msa0878500:three_prime_UTR 40.0%
!! GGCCTTTTTAAAAGCTCAGT+TGG + chr6_1:19609901-19609920 Msa0878500:three_prime_UTR 40.0%
TCTCACTCAGCTCAAGAATG+AGG + chr6_1:19603943-19603962 Msa0878500:exon 45.0%
ATGTCTCTGCAACCACAACA+CGG - chr6_1:19604305-19604324 None:intergenic 45.0%
ATCAAAACCCTCTGATGTCG+CGG + chr6_1:19604323-19604342 Msa0878500:intron 45.0%
! CAATGATGGTCGTGTTGTTG+CGG + chr6_1:19604494-19604513 Msa0878500:intron 45.0%
TGCGGCTCATATTGTAGTTG+AGG + chr6_1:19604545-19604564 Msa0878500:intron 45.0%
GTGATCAAAGGCTGCTGATA+TGG + chr6_1:19604682-19604701 Msa0878500:intron 45.0%
CATCAGGTAGAGCAATAGTC+AGG - chr6_1:19605113-19605132 None:intergenic 45.0%
TATTGCTCTACCTGATGCCA+AGG + chr6_1:19605116-19605135 Msa0878500:CDS 45.0%
ACAGAAACATCCTTGGCATC+AGG - chr6_1:19605129-19605148 None:intergenic 45.0%
GAGAAGGTAAACAAACCCTG+AGG - chr6_1:19605162-19605181 None:intergenic 45.0%
TTGAACCCTAGAAGCAGAGA+AGG - chr6_1:19605178-19605197 None:intergenic 45.0%
! TTACGGATCGATTCAACCTG+AGG + chr6_1:19605227-19605246 Msa0878500:CDS 45.0%
TTCATAGCCCGGACAACAAT+TGG - chr6_1:19605468-19605487 None:intergenic 45.0%
CCGCAATTGCAATCACAATG+TGG - chr6_1:19605503-19605522 None:intergenic 45.0%
AGAAAGGACAAAGAGGTTGG+TGG + chr6_1:19605721-19605740 Msa0878500:CDS 45.0%
!! GACAAAGAGGTTGGTGGAAA+AGG + chr6_1:19605727-19605746 Msa0878500:CDS 45.0%
! TCAACTTTCAGGTATGGTGC+AGG - chr6_1:19605774-19605793 None:intergenic 45.0%
GTCAGCAAAGAACCATGTGT+TGG - chr6_1:19606191-19606210 None:intergenic 45.0%
CATAAACTGCCACATGTGAC+GGG - chr6_1:19606413-19606432 None:intergenic 45.0%
TGTAAGTTTCTTTGTGGGGG+GGG + chr6_1:19606452-19606471 Msa0878500:intron 45.0%
GGGGGGGGTAATAGAATATT+AGG + chr6_1:19606474-19606493 Msa0878500:intron 45.0%
GAATGTTAGCAGGAATGGGA+AGG + chr6_1:19606578-19606597 Msa0878500:intron 45.0%
ATGTAAAAAGGCTGAGGGTG+TGG + chr6_1:19606851-19606870 Msa0878500:intron 45.0%
GAGACGTTAATCCTAGCAGT+TGG + chr6_1:19606876-19606895 Msa0878500:intron 45.0%
GCAAAAATCTGCCAACTGCT+AGG - chr6_1:19606890-19606909 None:intergenic 45.0%
ATCTCACGAGCTCAGAATCT+AGG - chr6_1:19606978-19606997 None:intergenic 45.0%
ACCTCGTCTATTAGCTGCTT+TGG + chr6_1:19607041-19607060 Msa0878500:intron 45.0%
! AGCTGCTTTGGCTAGTATAG+GGG + chr6_1:19607053-19607072 Msa0878500:intron 45.0%
GTGCCTACCATTGTTATCTC+TGG + chr6_1:19607177-19607196 Msa0878500:intron 45.0%
ACAACAAACAGATGGGCCAA+AGG + chr6_1:19607439-19607458 Msa0878500:intron 45.0%
TCGTGAGTCATACACAACGA+AGG + chr6_1:19607497-19607516 Msa0878500:intron 45.0%
! AGGTCGTGAGAGCATAATGT+TGG - chr6_1:19607582-19607601 None:intergenic 45.0%
GATGCAAAAGATGGCATGAC+TGG + chr6_1:19607759-19607778 Msa0878500:intron 45.0%
GGGAAGAGAAGGGGAAAAAT+AGG - chr6_1:19607850-19607869 None:intergenic 45.0%
ATGACTGAAGACAGACTGCA+GGG - chr6_1:19607871-19607890 None:intergenic 45.0%
TTACAGGGACCATGATGCTA+AGG - chr6_1:19608291-19608310 None:intergenic 45.0%
! ATGGTCCCTGTAATTTGCCT+TGG + chr6_1:19608298-19608317 Msa0878500:intron 45.0%
! TGGTCCCTGTAATTTGCCTT+GGG + chr6_1:19608299-19608318 Msa0878500:intron 45.0%
GACACCCAAGGCAAATTACA+GGG - chr6_1:19608306-19608325 None:intergenic 45.0%
TGACACCCAAGGCAAATTAC+AGG - chr6_1:19608307-19608326 None:intergenic 45.0%
ATTTGCCTTGGGTGTCAGAT+TGG + chr6_1:19608310-19608329 Msa0878500:intron 45.0%
TTGAACCAATCTGACACCCA+AGG - chr6_1:19608318-19608337 None:intergenic 45.0%
CGTCCATCATCGTCAGATAT+TGG - chr6_1:19608452-19608471 None:intergenic 45.0%
GATGAAAGCAGTGACGATGA+AGG + chr6_1:19608589-19608608 Msa0878500:CDS 45.0%
ACTTGTGAGGCTATTTGGGA+GGG - chr6_1:19608960-19608979 None:intergenic 45.0%
AGATAGAGCAGATGCATGCA+TGG - chr6_1:19609063-19609082 None:intergenic 45.0%
AGGTGTAAGGTGGGAATAAG+AGG - chr6_1:19609419-19609438 None:intergenic 45.0%
!! AGATCTCCCTGACTTGGAAA+AGG + chr6_1:19609462-19609481 Msa0878500:intron 45.0%
!! ATAAAAATAAATTGTTTAAA+AGG - chr6_1:19604610-19604629 None:intergenic 5.0%
! TTTTGACGATGGCCGTGTTG+CGG + chr6_1:19604705-19604724 Msa0878500:intron 50.0%
ACATTCAAAGGCAGCGGACA+TGG + chr6_1:19604883-19604902 Msa0878500:intron 50.0%
GCGACTTAGACTACAGTTCG+CGG + chr6_1:19604964-19604983 Msa0878500:intron 50.0%
TCGCCATCCAGAAGTTCTCT+GGG + chr6_1:19605065-19605084 Msa0878500:CDS 50.0%
TTCTGTGAAGTGTGAGCCTC+AGG + chr6_1:19605143-19605162 Msa0878500:CDS 50.0%
TCTGTGAAGTGTGAGCCTCA+GGG + chr6_1:19605144-19605163 Msa0878500:CDS 50.0%
TGACTACATTGCAGGACGGT+TGG - chr6_1:19606343-19606362 None:intergenic 50.0%
GCAGTGACTACATTGCAGGA+CGG - chr6_1:19606347-19606366 None:intergenic 50.0%
!!! CTTTTGAAGCCCGTCACATG+TGG + chr6_1:19606401-19606420 Msa0878500:intron 50.0%
GTAAGTTTCTTTGTGGGGGG+GGG + chr6_1:19606453-19606472 Msa0878500:intron 50.0%
TAAGTTTCTTTGTGGGGGGG+GGG + chr6_1:19606454-19606473 Msa0878500:intron 50.0%
! GCAGTTGGCAGATTTTTGCC+TGG + chr6_1:19606891-19606910 Msa0878500:intron 50.0%
GATCAAACTCAAGGTAGGCC+AGG - chr6_1:19606912-19606931 None:intergenic 50.0%
GCCAAAGCAGCTAATAGACG+AGG - chr6_1:19607045-19607064 None:intergenic 50.0%
! GCTGCTTTGGCTAGTATAGG+GGG + chr6_1:19607054-19607073 Msa0878500:intron 50.0%
GGTAGAGCAGGTAGATGAGA+AGG + chr6_1:19607078-19607097 Msa0878500:intron 50.0%
CAGGTAGATGAGAAGGACAC+AGG + chr6_1:19607085-19607104 Msa0878500:intron 50.0%
GTAGATGAGAAGGACACAGG+AGG + chr6_1:19607088-19607107 Msa0878500:intron 50.0%
AGAAGGACACAGGAGGTGAT+GGG + chr6_1:19607095-19607114 Msa0878500:intron 50.0%
ACCACGAGCGATTGAGATTG+CGG + chr6_1:19607263-19607282 Msa0878500:intron 50.0%
GCGATTGAGATTGCGGAGTT+TGG + chr6_1:19607270-19607289 Msa0878500:intron 50.0%
CACAGCAGTCACTCTTCTGT+AGG - chr6_1:19607313-19607332 None:intergenic 50.0%
TAAGGAGAGGAGGGTGGTTT+GGG - chr6_1:19607417-19607436 None:intergenic 50.0%
TTAAGGAGAGGAGGGTGGTT+TGG - chr6_1:19607418-19607437 None:intergenic 50.0%
TTGTGTTAAGGAGAGGAGGG+TGG - chr6_1:19607423-19607442 None:intergenic 50.0%
GACGACTATACTCGGATTCC+AGG + chr6_1:19607636-19607655 Msa0878500:intron 50.0%
TGACTGAAGACAGACTGCAG+GGG - chr6_1:19607870-19607889 None:intergenic 50.0%
GATGACTGAAGACAGACTGC+AGG - chr6_1:19607872-19607891 None:intergenic 50.0%
CACTTGTGAGGCTATTTGGG+AGG - chr6_1:19608961-19608980 None:intergenic 50.0%
CTCCCAAATAGCCTCACAAG+TGG + chr6_1:19608959-19608978 Msa0878500:intron 50.0%
TCTTGCAGATCTCCCTGACT+TGG + chr6_1:19609456-19609475 Msa0878500:intron 50.0%
!! TCCCTGACTTGGAAAAGGCT+AGG + chr6_1:19609467-19609486 Msa0878500:CDS 50.0%
!! CCCTAGCCTTTTCCAAGTCA+GGG - chr6_1:19609471-19609490 None:intergenic 50.0%
!! CCCTGACTTGGAAAAGGCTA+GGG + chr6_1:19609468-19609487 Msa0878500:CDS 50.0%
ATCTGAGCCGCGACATCAGA+GGG - chr6_1:19604333-19604352 None:intergenic 55.0%
AATCTGAGCCGCGACATCAG+AGG - chr6_1:19604334-19604353 None:intergenic 55.0%
CTCGACTACAAGCTGAGCTG+TGG - chr6_1:19604748-19604767 None:intergenic 55.0%
CACAGCTCAGCTTGTAGTCG+AGG + chr6_1:19604746-19604765 Msa0878500:intron 55.0%
GTCGCCATCCAGAAGTTCTC+TGG + chr6_1:19605064-19605083 Msa0878500:intron 55.0%
GTGCCCAGAGAACTTCTGGA+TGG - chr6_1:19605071-19605090 None:intergenic 55.0%
AAGTTTCTTTGTGGGGGGGG+GGG + chr6_1:19606455-19606474 Msa0878500:intron 55.0%
GCTTTGGCTAGTATAGGGGG+TGG + chr6_1:19607057-19607076 Msa0878500:intron 55.0%
AGTATAGGGGGTGGTAGAGC+AGG + chr6_1:19607066-19607085 Msa0878500:intron 55.0%
GAGAAGGACACAGGAGGTGA+TGG + chr6_1:19607094-19607113 Msa0878500:intron 55.0%
!! CAGGAGGTGATGGGTGTAGT+AGG + chr6_1:19607104-19607123 Msa0878500:intron 55.0%
TCCGCAATCTCAATCGCTCG+TGG - chr6_1:19607267-19607286 None:intergenic 55.0%
AGACTGCAGGGGAAGAGAAG+GGG - chr6_1:19607859-19607878 None:intergenic 55.0%
CAGACTGCAGGGGAAGAGAA+GGG - chr6_1:19607860-19607879 None:intergenic 55.0%
ACAGACTGCAGGGGAAGAGA+AGG - chr6_1:19607861-19607880 None:intergenic 55.0%
!! GCCCTAGCCTTTTCCAAGTC+AGG - chr6_1:19609472-19609491 None:intergenic 55.0%
! GGAATAGGTTGAGCCGAGCT+AGG + chr6_1:19609818-19609837 Msa0878500:three_prime_UTR 55.0%
GGACCTTGCATAGCCTAGCT+CGG - chr6_1:19609834-19609853 None:intergenic 55.0%
CGCGGCTCAGATTGTAGTCG+AGG + chr6_1:19604341-19604360 Msa0878500:intron 60.0%
GGCTGCGACTGCAGAGACAT+TGG + chr6_1:19604927-19604946 Msa0878500:intron 60.0%
CGCTGTGCCCAGAGAACTTC+TGG - chr6_1:19605075-19605094 None:intergenic 60.0%
GTTCTCTGGGCACAGCGTTC+TGG + chr6_1:19605078-19605097 Msa0878500:CDS 60.0%
CTGGGCACAGCGTTCTGGTA+AGG + chr6_1:19605083-19605102 Msa0878500:CDS 60.0%
AGTTTCTTTGTGGGGGGGGG+GGG + chr6_1:19606456-19606475 Msa0878500:intron 60.0%
! GAGGAGGGTGGTTTGGGTCA+GGG - chr6_1:19607411-19607430 None:intergenic 60.0%
! AGAGGAGGGTGGTTTGGGTC+AGG - chr6_1:19607412-19607431 None:intergenic 60.0%
TCGAGCGCAATGAGCGGAGA+GGG - chr6_1:19607469-19607488 None:intergenic 60.0%
AGTCGCTCGAGCGCAATGAG+CGG - chr6_1:19607475-19607494 None:intergenic 60.0%
GAGCCGAGCTAGGCTATGCA+AGG + chr6_1:19609828-19609847 Msa0878500:three_prime_UTR 60.0%
GTTTCTTTGTGGGGGGGGGG+GGG + chr6_1:19606457-19606476 Msa0878500:intron 65.0%
TTTCTTTGTGGGGGGGGGGG+GGG + chr6_1:19606458-19606477 Msa0878500:intron 65.0%
CTCGAGCGCAATGAGCGGAG+AGG - chr6_1:19607470-19607489 None:intergenic 65.0%
TTCTTTGTGGGGGGGGGGGG+GGG + chr6_1:19606459-19606478 Msa0878500:intron 70.0%
!! GAGCGGAGAGGGAGCGCCTT+TGG - chr6_1:19607458-19607477 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 19603895 19609932 19603895 ID=Msa0878500;Name=Msa0878500
chr6_1 mRNA 19603895 19609932 19603895 ID=Msa0878500-mRNA-1;Parent=Msa0878500;Name=Msa0878500-mRNA-1;_AED=0.13;_eAED=0.13;_QI=65|1|1|1|0.83|0.71|7|367|151
chr6_1 exon 19603895 19603964 19603895 ID=Msa0878500-mRNA-1:exon:5304;Parent=Msa0878500-mRNA-1
chr6_1 exon 19605065 19605248 19605065 ID=Msa0878500-mRNA-1:exon:5305;Parent=Msa0878500-mRNA-1
chr6_1 exon 19605675 19605831 19605675 ID=Msa0878500-mRNA-1:exon:5306;Parent=Msa0878500-mRNA-1
chr6_1 exon 19608444 19608472 19608444 ID=Msa0878500-mRNA-1:exon:5307;Parent=Msa0878500-mRNA-1
chr6_1 exon 19608574 19608619 19608574 ID=Msa0878500-mRNA-1:exon:5308;Parent=Msa0878500-mRNA-1
chr6_1 exon 19609464 19609707 19609464 ID=Msa0878500-mRNA-1:exon:5309;Parent=Msa0878500-mRNA-1
chr6_1 exon 19609775 19609932 19609775 ID=Msa0878500-mRNA-1:exon:5310;Parent=Msa0878500-mRNA-1
chr6_1 five_prime_UTR 19603895 19603959 19603895 ID=Msa0878500-mRNA-1:five_prime_utr;Parent=Msa0878500-mRNA-1
chr6_1 CDS 19603960 19603964 19603960 ID=Msa0878500-mRNA-1:cds;Parent=Msa0878500-mRNA-1
chr6_1 CDS 19605065 19605248 19605065 ID=Msa0878500-mRNA-1:cds;Parent=Msa0878500-mRNA-1
chr6_1 CDS 19605675 19605831 19605675 ID=Msa0878500-mRNA-1:cds;Parent=Msa0878500-mRNA-1
chr6_1 CDS 19608444 19608472 19608444 ID=Msa0878500-mRNA-1:cds;Parent=Msa0878500-mRNA-1
chr6_1 CDS 19608574 19608619 19608574 ID=Msa0878500-mRNA-1:cds;Parent=Msa0878500-mRNA-1
chr6_1 CDS 19609464 19609498 19609464 ID=Msa0878500-mRNA-1:cds;Parent=Msa0878500-mRNA-1
chr6_1 three_prime_UTR 19609499 19609707 19609499 ID=Msa0878500-mRNA-1:three_prime_utr;Parent=Msa0878500-mRNA-1
chr6_1 three_prime_UTR 19609775 19609932 19609775 ID=Msa0878500-mRNA-1:three_prime_utr;Parent=Msa0878500-mRNA-1
Gene Sequence

>Msa0878500

ATGAGTCGCCATCCAGAAGTTCTCTGGGCACAGCGTTCTGGTAAGGTTTACCTGACTATTGCTCTACCTGATGCCAAGGATGTTTCTGTGAAGTGTGAGCCTCAGGGTTTGTTTACCTTCTCTGCTTCTAGGGTTCAACATGAATCCTATAGCTTTAGCTTGGAACTTTACGGATCGATTCAACCTGAGGGTTGTAAAACTAAAACTGGCTCAAGAAACATACTATGCTCAATTCAGAAAGGACAAAGAGGTTGGTGGAAAAGGTTACTGAAGTCTGAAGAGAAACCTGCACCATACCTGAAAGTTGATTGGAATAAATGGTGTGATGAAGATGAAGAGTCAGAATCTGAACCAATATCTGACGATGATGGACGGTTTGCTGGTGAAGATGATGAAAGCAGTGACGATGAAGGAATGTTATATCTCCCTGACTTGGAAAAGGCTAGGGCAAAGTAA

Protein sequence

>Msa0878500

MSRHPEVLWAQRSGKVYLTIALPDAKDVSVKCEPQGLFTFSASRVQHESYSFSLELYGSIQPEGCKTKTGSRNILCSIQKGQRGWWKRLLKSEEKPAPYLKVDWNKWCDEDEESESEPISDDDGRFAGEDDESSDDEGMLYLPDLEKARAK*