Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125580 | XP_013468641.1 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1 | 126 | 4.32e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125580 | sp|Q8L8Q8|Y5486_ARATH | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.45e-73 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125580 | A0A072VML2 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1 | 126 | 2.06e-86 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0125580 | 0.825069 | 5.731749e-54 | -8.615850e-47 |
| Msa0004360 | Msa0125580 | 0.802700 | 4.953838e-49 | -8.615850e-47 |
| Msa0005050 | Msa0125580 | 0.801667 | 8.081236e-49 | -8.615850e-47 |
| Msa0030310 | Msa0125580 | 0.813349 | 2.677585e-51 | -8.615850e-47 |
| Msa0053110 | Msa0125580 | 0.818878 | 1.557761e-52 | -8.615850e-47 |
| Msa0125580 | Msa0139900 | 0.801886 | 7.288146e-49 | -8.615850e-47 |
| Msa0125580 | Msa0146470 | 0.820134 | 8.054516e-53 | -8.615850e-47 |
| Msa0125580 | Msa0169570 | 0.936047 | 3.237829e-97 | -8.615850e-47 |
| Msa0125580 | Msa0246690 | 0.807198 | 5.683745e-50 | -8.615850e-47 |
| Msa0125580 | Msa0469910 | -0.800267 | 1.561509e-48 | -8.615850e-47 |
| Msa0125580 | Msa0472380 | 0.820039 | 8.466486e-53 | -8.615850e-47 |
| Msa0125580 | Msa0607600 | -0.809000 | 2.348531e-50 | -8.615850e-47 |
| Msa0125580 | Msa0633750 | 0.802220 | 6.219650e-49 | -8.615850e-47 |
| Msa0125580 | Msa0642650 | 0.813523 | 2.451932e-51 | -8.615850e-47 |
| Msa0125580 | Msa0678860 | 0.875261 | 3.541997e-68 | -8.615850e-47 |
| Msa0125580 | Msa0687860 | -0.811994 | 5.298426e-51 | -8.615850e-47 |
| Msa0125580 | Msa0747780 | 0.810012 | 1.424077e-50 | -8.615850e-47 |
| Msa0125580 | Msa0872310 | 0.812539 | 4.030406e-51 | -8.615850e-47 |
| Msa0125580 | Msa0905550 | 0.827840 | 1.252491e-54 | -8.615850e-47 |
| Msa0125580 | Msa0937550 | 0.837891 | 3.976901e-57 | -8.615850e-47 |
| Msa0125580 | Msa0974750 | 0.812515 | 4.078971e-51 | -8.615850e-47 |
| Msa0125580 | Msa1150970 | 0.813249 | 2.816150e-51 | -8.615850e-47 |
| Msa0125580 | Msa1249870 | 0.822834 | 1.916349e-53 | -8.615850e-47 |
| Msa0125580 | Msa1315980 | 0.804650 | 1.951371e-49 | -8.615850e-47 |
| Msa0125580 | Msa1397050 | 0.805930 | 1.052194e-49 | -8.615850e-47 |
| Msa0125580 | Msa1449880 | 0.816457 | 5.475331e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125580 | MtrunA17_Chr1g0186311 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1 | 126 | 3.97e-90 | 256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125580 | AT5G64816.2 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
| Msa0125580 | AT5G64816.4 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
| Msa0125580 | AT5G64816.1 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
| Msa0125580 | AT5G64816.3 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
Find 33 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATATTTGGTGGTCACTTT+TGG | 0.138181 | 1_3:+54043981 | Msa0125580:CDS |
| TTCAAAGAGGATGTTGAAAA+AGG | 0.272946 | 1_3:+54044140 | Msa0125580:CDS |
| ACCAACATCAAGTACCTAAT+TGG | 0.274343 | 1_3:+54044268 | Msa0125580:CDS |
| GATACTTGTGTTACTGTTTG+TGG | 0.347747 | 1_3:+54044192 | Msa0125580:CDS |
| GCAGTCCCTGTCGTTGTTGC+AGG | 0.348680 | 1_3:+54044009 | Msa0125580:CDS |
| TATCAGAGATGGGAGATATT+TGG | 0.353189 | 1_3:+54043968 | Msa0125580:exon |
| ATTGGAATGACACATGTCTT+AGG | 0.381625 | 1_3:+54044286 | Msa0125580:CDS |
| AGACATGTGTCATTCCAATT+AGG | 0.386451 | 1_3:-54044282 | None:intergenic |
| GTAACACAAGTATCAGGAAT+TGG | 0.406394 | 1_3:-54044183 | None:intergenic |
| CAAACAGTAACACAAGTATC+AGG | 0.430522 | 1_3:-54044189 | None:intergenic |
| TTCTCTTTCTCCGCCACCGC+CGG | 0.441914 | 1_3:+54042924 | Msa0125580:five_prime_UTR |
| GCTTGTCCTGCAACAACGAC+AGG | 0.451940 | 1_3:-54044015 | None:intergenic |
| TCCAATTAGGTACTTGATGT+TGG | 0.474351 | 1_3:-54044269 | None:intergenic |
| GCTATAGAAATACGAAGGTA+AGG | 0.475057 | 1_3:+54042847 | None:intergenic |
| AAGCATTTAGAGTTAAGAAA+AGG | 0.483524 | 1_3:+54044034 | Msa0125580:CDS |
| TGCTGAAGCTTGTGCTCGTA+CGG | 0.484272 | 1_3:+54044236 | Msa0125580:CDS |
| AGCAAAGGTTGAAGAGTGCA+AGG | 0.518677 | 1_3:+54044067 | Msa0125580:CDS |
| GTGAAACTAACCGGCGGTGG+CGG | 0.523447 | 1_3:-54042934 | None:intergenic |
| AAGTTGTGTAGTATCAGAGA+TGG | 0.527208 | 1_3:+54043957 | Msa0125580:intron |
| AAAGGAATGCAGAGGAGCAA+AGG | 0.541153 | 1_3:+54044052 | Msa0125580:CDS |
| AGAGTGCAAGGGGAAGAGAA+AGG | 0.552353 | 1_3:+54044079 | Msa0125580:CDS |
| CAGAGATGGGAGATATTTGG+TGG | 0.589138 | 1_3:+54043971 | Msa0125580:exon |
| GGCGGTGGCGGAGAAAGAGA+AGG | 0.591461 | 1_3:-54042922 | None:intergenic |
| CTATAGAAATACGAAGGTAA+GGG | 0.604283 | 1_3:+54042848 | None:intergenic |
| CAAAGGTTGAAGAGTGCAAG+GGG | 0.608201 | 1_3:+54044069 | Msa0125580:CDS |
| GCAAAGGTTGAAGAGTGCAA+GGG | 0.610878 | 1_3:+54044068 | Msa0125580:CDS |
| AGTTGTGTAGTATCAGAGAT+GGG | 0.617867 | 1_3:+54043958 | Msa0125580:intron |
| AGTTAAGAAAAGGAATGCAG+AGG | 0.619043 | 1_3:+54044044 | Msa0125580:CDS |
| CTTGTCCTGCAACAACGACA+GGG | 0.623317 | 1_3:-54044014 | None:intergenic |
| GAAGTGAAACTAACCGGCGG+TGG | 0.626939 | 1_3:-54042937 | None:intergenic |
| GGAATGACACATGTCTTAGG+AGG | 0.635618 | 1_3:+54044289 | Msa0125580:CDS |
| AAAGGGTCTGCACTTCAAAG+AGG | 0.655293 | 1_3:+54044127 | Msa0125580:CDS |
| GGTGGCGGAGAAAGAGAAGG+CGG | 0.735009 | 1_3:-54042919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAATTAAGAGAAAAATT+AGG | - | chr1_3:54043045-54043064 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTGTTGAAA+TGG | + | chr1_3:54043170-54043189 | Msa0125580:intron | 15.0% |
| !! | ATATATAGTTTAAGGAATAA+AGG | + | chr1_3:54043361-54043380 | Msa0125580:intron | 15.0% |
| !! | TATATAGTTTAAGGAATAAA+GGG | + | chr1_3:54043362-54043381 | Msa0125580:intron | 15.0% |
| !! | ATATTTAATGTCAATATTGA+GGG | + | chr1_3:54043579-54043598 | Msa0125580:intron | 15.0% |
| !! | TTAATGATAAGAAACAATTT+GGG | - | chr1_3:54043728-54043747 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAACAATT+TGG | - | chr1_3:54043729-54043748 | None:intergenic | 15.0% |
| !! | TTTCTTATCATTAATTAAAG+TGG | + | chr1_3:54043734-54043753 | Msa0125580:intron | 15.0% |
| !! | TGAAAATTAAGAGAAAAATT+AGG | - | chr1_3:54043045-54043064 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTGTTGAAA+TGG | + | chr1_3:54043170-54043189 | Msa0125580:intron | 15.0% |
| !! | ATATATAGTTTAAGGAATAA+AGG | + | chr1_3:54043361-54043380 | Msa0125580:intron | 15.0% |
| !! | TATATAGTTTAAGGAATAAA+GGG | + | chr1_3:54043362-54043381 | Msa0125580:intron | 15.0% |
| !! | ATATTTAATGTCAATATTGA+GGG | + | chr1_3:54043579-54043598 | Msa0125580:intron | 15.0% |
| !! | TTAATGATAAGAAACAATTT+GGG | - | chr1_3:54043728-54043747 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAACAATT+TGG | - | chr1_3:54043729-54043748 | None:intergenic | 15.0% |
| !! | TTTCTTATCATTAATTAAAG+TGG | + | chr1_3:54043734-54043753 | Msa0125580:intron | 15.0% |
| !! | GAAATAAAAAGTAAGATAGA+AGG | - | chr1_3:54042995-54043014 | None:intergenic | 20.0% |
| !! | TCAAATGTTAAATTAACATG+TGG | + | chr1_3:54043145-54043164 | Msa0125580:intron | 20.0% |
| !! | CAAATGTTAAATTAACATGT+GGG | + | chr1_3:54043146-54043165 | Msa0125580:intron | 20.0% |
| !! | AAATGTTAAATTAACATGTG+GGG | + | chr1_3:54043147-54043166 | Msa0125580:intron | 20.0% |
| !! | ATATAGTTTAAGGAATAAAG+GGG | + | chr1_3:54043363-54043382 | Msa0125580:intron | 20.0% |
| !! | CATATTTAATGTCAATATTG+AGG | + | chr1_3:54043578-54043597 | Msa0125580:intron | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | + | chr1_3:54043653-54043672 | Msa0125580:intron | 20.0% |
| !! | TAATGATAAGAAACAATTTG+GGG | - | chr1_3:54043727-54043746 | None:intergenic | 20.0% |
| !! | TTAAAAATTTCGTTGTGTAT+TGG | + | chr1_3:54043829-54043848 | Msa0125580:intron | 20.0% |
| !! | TAAAAATTTCGTTGTGTATT+GGG | + | chr1_3:54043830-54043849 | Msa0125580:intron | 20.0% |
| !! | GAAATAAAAAGTAAGATAGA+AGG | - | chr1_3:54042995-54043014 | None:intergenic | 20.0% |
| !! | TCAAATGTTAAATTAACATG+TGG | + | chr1_3:54043145-54043164 | Msa0125580:intron | 20.0% |
| !! | CAAATGTTAAATTAACATGT+GGG | + | chr1_3:54043146-54043165 | Msa0125580:intron | 20.0% |
| !! | AAATGTTAAATTAACATGTG+GGG | + | chr1_3:54043147-54043166 | Msa0125580:intron | 20.0% |
| !! | ATATAGTTTAAGGAATAAAG+GGG | + | chr1_3:54043363-54043382 | Msa0125580:intron | 20.0% |
| !! | CATATTTAATGTCAATATTG+AGG | + | chr1_3:54043578-54043597 | Msa0125580:intron | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | + | chr1_3:54043653-54043672 | Msa0125580:intron | 20.0% |
| !! | TAATGATAAGAAACAATTTG+GGG | - | chr1_3:54043727-54043746 | None:intergenic | 20.0% |
| !! | TTAAAAATTTCGTTGTGTAT+TGG | + | chr1_3:54043829-54043848 | Msa0125580:intron | 20.0% |
| !! | TAAAAATTTCGTTGTGTATT+GGG | + | chr1_3:54043830-54043849 | Msa0125580:intron | 20.0% |
| !! | CATTTGAAGCATTTATTCAT+AGG | - | chr1_3:54043132-54043151 | None:intergenic | 25.0% |
| ! | GGAGAGAAAATGTTAATTTA+AGG | - | chr1_3:54043228-54043247 | None:intergenic | 25.0% |
| ! | CTTAGTATTAAGGACTAAAT+TGG | - | chr1_3:54043249-54043268 | None:intergenic | 25.0% |
| ! | TGACTAAGTTCAAATACTTT+AGG | + | chr1_3:54043317-54043336 | Msa0125580:intron | 25.0% |
| ! | GACTAAGTTCAAATACTTTA+GGG | + | chr1_3:54043318-54043337 | Msa0125580:intron | 25.0% |
| !! | TTTGAAATTTCGATACTTGA+AGG | - | chr1_3:54043436-54043455 | None:intergenic | 25.0% |
| ! | ATCGAAATTTCAAAATAGTC+CGG | + | chr1_3:54043442-54043461 | Msa0125580:intron | 25.0% |
| ! | ATACTTACTTATTGTCGTAT+CGG | + | chr1_3:54043531-54043550 | Msa0125580:intron | 25.0% |
| !! | TATTTTACAACTGTCATTGA+GGG | + | chr1_3:54043775-54043794 | Msa0125580:intron | 25.0% |
| ! | AAACTATATAACCTAAGAGA+CGG | - | chr1_3:54043811-54043830 | None:intergenic | 25.0% |
| ! | AAAGATTGAAATTCTGTAAC+TGG | + | chr1_3:54043875-54043894 | Msa0125580:intron | 25.0% |
| ! | AAGATTGAAATTCTGTAACT+GGG | + | chr1_3:54043876-54043895 | Msa0125580:intron | 25.0% |
| ! | GTATAAATTTGAAGAAAGAG+CGG | + | chr1_3:54043931-54043950 | Msa0125580:intron | 25.0% |
| !! | AAGCATTTAGAGTTAAGAAA+AGG | + | chr1_3:54044034-54044053 | Msa0125580:CDS | 25.0% |
| !! | ATGAAATTTTCGTTTGTGAA+AGG | + | chr1_3:54044109-54044128 | Msa0125580:CDS | 25.0% |
| !! | TGAAATTTTCGTTTGTGAAA+GGG | + | chr1_3:54044110-54044129 | Msa0125580:CDS | 25.0% |
| !! | CATTTGAAGCATTTATTCAT+AGG | - | chr1_3:54043132-54043151 | None:intergenic | 25.0% |
| ! | GGAGAGAAAATGTTAATTTA+AGG | - | chr1_3:54043228-54043247 | None:intergenic | 25.0% |
| ! | CTTAGTATTAAGGACTAAAT+TGG | - | chr1_3:54043249-54043268 | None:intergenic | 25.0% |
| ! | TGACTAAGTTCAAATACTTT+AGG | + | chr1_3:54043317-54043336 | Msa0125580:intron | 25.0% |
| ! | GACTAAGTTCAAATACTTTA+GGG | + | chr1_3:54043318-54043337 | Msa0125580:intron | 25.0% |
| !! | TTTGAAATTTCGATACTTGA+AGG | - | chr1_3:54043436-54043455 | None:intergenic | 25.0% |
| ! | ATCGAAATTTCAAAATAGTC+CGG | + | chr1_3:54043442-54043461 | Msa0125580:intron | 25.0% |
| ! | ATACTTACTTATTGTCGTAT+CGG | + | chr1_3:54043531-54043550 | Msa0125580:intron | 25.0% |
| !! | TATTTTACAACTGTCATTGA+GGG | + | chr1_3:54043775-54043794 | Msa0125580:intron | 25.0% |
| ! | AAACTATATAACCTAAGAGA+CGG | - | chr1_3:54043811-54043830 | None:intergenic | 25.0% |
| ! | AAAGATTGAAATTCTGTAAC+TGG | + | chr1_3:54043875-54043894 | Msa0125580:intron | 25.0% |
| ! | AAGATTGAAATTCTGTAACT+GGG | + | chr1_3:54043876-54043895 | Msa0125580:intron | 25.0% |
| ! | GTATAAATTTGAAGAAAGAG+CGG | + | chr1_3:54043931-54043950 | Msa0125580:intron | 25.0% |
| !! | AAGCATTTAGAGTTAAGAAA+AGG | + | chr1_3:54044034-54044053 | Msa0125580:CDS | 25.0% |
| !! | ATGAAATTTTCGTTTGTGAA+AGG | + | chr1_3:54044109-54044128 | Msa0125580:CDS | 25.0% |
| !! | TGAAATTTTCGTTTGTGAAA+GGG | + | chr1_3:54044110-54044129 | Msa0125580:CDS | 25.0% |
| AGTAAGATAGAAGGAAGAAA+TGG | - | chr1_3:54042986-54043005 | None:intergenic | 30.0% | |
| ATTAATTAAAGTGGCACCAA+TGG | + | chr1_3:54043743-54043762 | Msa0125580:intron | 30.0% | |
| ! | CTATTTTACAACTGTCATTG+AGG | + | chr1_3:54043774-54043793 | Msa0125580:intron | 30.0% |
| TTCAAAGAGGATGTTGAAAA+AGG | + | chr1_3:54044140-54044159 | Msa0125580:CDS | 30.0% | |
| AGTAAGATAGAAGGAAGAAA+TGG | - | chr1_3:54042986-54043005 | None:intergenic | 30.0% | |
| ATTAATTAAAGTGGCACCAA+TGG | + | chr1_3:54043743-54043762 | Msa0125580:intron | 30.0% | |
| ! | CTATTTTACAACTGTCATTG+AGG | + | chr1_3:54043774-54043793 | Msa0125580:intron | 30.0% |
| TTCAAAGAGGATGTTGAAAA+AGG | + | chr1_3:54044140-54044159 | Msa0125580:CDS | 30.0% | |
| AGAATGGAAGTGAAACTAAC+CGG | - | chr1_3:54042946-54042965 | None:intergenic | 35.0% | |
| AAGGAACGAAAATGGAAGAA+TGG | - | chr1_3:54042962-54042981 | None:intergenic | 35.0% | |
| GAAATGGAAAGGAACGAAAA+TGG | - | chr1_3:54042970-54042989 | None:intergenic | 35.0% | |
| GATAGAAGGAAGAAATGGAA+AGG | - | chr1_3:54042981-54043000 | None:intergenic | 35.0% | |
| TCTCGAACGTCTTAGTATTA+AGG | - | chr1_3:54043259-54043278 | None:intergenic | 35.0% | |
| TTTCAAAATAGTCCGGATTG+TGG | + | chr1_3:54043449-54043468 | Msa0125580:intron | 35.0% | |
| TGATTACTCGTTACACATTC+AGG | + | chr1_3:54043684-54043703 | Msa0125580:intron | 35.0% | |
| GATTACTCGTTACACATTCA+GGG | + | chr1_3:54043685-54043704 | Msa0125580:intron | 35.0% | |
| TAAAATAGTCACAGTGCCAT+TGG | - | chr1_3:54043762-54043781 | None:intergenic | 35.0% | |
| AAATTTCGTTGTGTATTGGG+TGG | + | chr1_3:54043833-54043852 | Msa0125580:intron | 35.0% | |
| !!! | AACTGGGTTGTTTGTTTTGT+TGG | + | chr1_3:54043892-54043911 | Msa0125580:intron | 35.0% |
| !!! | ACTGGGTTGTTTGTTTTGTT+GGG | + | chr1_3:54043893-54043912 | Msa0125580:intron | 35.0% |
| AAGTTGTGTAGTATCAGAGA+TGG | + | chr1_3:54043957-54043976 | Msa0125580:intron | 35.0% | |
| AGTTGTGTAGTATCAGAGAT+GGG | + | chr1_3:54043958-54043977 | Msa0125580:intron | 35.0% | |
| TATCAGAGATGGGAGATATT+TGG | + | chr1_3:54043968-54043987 | Msa0125580:exon | 35.0% | |
| !! | AGATATTTGGTGGTCACTTT+TGG | + | chr1_3:54043981-54044000 | Msa0125580:CDS | 35.0% |
| !!! | GATATTTGGTGGTCACTTTT+GGG | + | chr1_3:54043982-54044001 | Msa0125580:CDS | 35.0% |
| !!! | ATATTTGGTGGTCACTTTTG+GGG | + | chr1_3:54043983-54044002 | Msa0125580:CDS | 35.0% |
| AGTTAAGAAAAGGAATGCAG+AGG | + | chr1_3:54044044-54044063 | Msa0125580:CDS | 35.0% | |
| AAGAGGATGTTGAAAAAGGT+TGG | + | chr1_3:54044144-54044163 | Msa0125580:CDS | 35.0% | |
| GTAACACAAGTATCAGGAAT+TGG | - | chr1_3:54044186-54044205 | None:intergenic | 35.0% | |
| CAAACAGTAACACAAGTATC+AGG | - | chr1_3:54044192-54044211 | None:intergenic | 35.0% | |
| ! | GATACTTGTGTTACTGTTTG+TGG | + | chr1_3:54044192-54044211 | Msa0125580:CDS | 35.0% |
| ACCAACATCAAGTACCTAAT+TGG | + | chr1_3:54044268-54044287 | Msa0125580:CDS | 35.0% | |
| TCCAATTAGGTACTTGATGT+TGG | - | chr1_3:54044272-54044291 | None:intergenic | 35.0% | |
| ! | AGACATGTGTCATTCCAATT+AGG | - | chr1_3:54044285-54044304 | None:intergenic | 35.0% |
| ATTGGAATGACACATGTCTT+AGG | + | chr1_3:54044286-54044305 | Msa0125580:CDS | 35.0% | |
| AGAATGGAAGTGAAACTAAC+CGG | - | chr1_3:54042946-54042965 | None:intergenic | 35.0% | |
| AAGGAACGAAAATGGAAGAA+TGG | - | chr1_3:54042962-54042981 | None:intergenic | 35.0% | |
| GAAATGGAAAGGAACGAAAA+TGG | - | chr1_3:54042970-54042989 | None:intergenic | 35.0% | |
| GATAGAAGGAAGAAATGGAA+AGG | - | chr1_3:54042981-54043000 | None:intergenic | 35.0% | |
| TCTCGAACGTCTTAGTATTA+AGG | - | chr1_3:54043259-54043278 | None:intergenic | 35.0% | |
| TTTCAAAATAGTCCGGATTG+TGG | + | chr1_3:54043449-54043468 | Msa0125580:intron | 35.0% | |
| TGATTACTCGTTACACATTC+AGG | + | chr1_3:54043684-54043703 | Msa0125580:intron | 35.0% | |
| GATTACTCGTTACACATTCA+GGG | + | chr1_3:54043685-54043704 | Msa0125580:intron | 35.0% | |
| TAAAATAGTCACAGTGCCAT+TGG | - | chr1_3:54043762-54043781 | None:intergenic | 35.0% | |
| AAATTTCGTTGTGTATTGGG+TGG | + | chr1_3:54043833-54043852 | Msa0125580:intron | 35.0% | |
| !!! | AACTGGGTTGTTTGTTTTGT+TGG | + | chr1_3:54043892-54043911 | Msa0125580:intron | 35.0% |
| !!! | ACTGGGTTGTTTGTTTTGTT+GGG | + | chr1_3:54043893-54043912 | Msa0125580:intron | 35.0% |
| AAGTTGTGTAGTATCAGAGA+TGG | + | chr1_3:54043957-54043976 | Msa0125580:intron | 35.0% | |
| AGTTGTGTAGTATCAGAGAT+GGG | + | chr1_3:54043958-54043977 | Msa0125580:intron | 35.0% | |
| TATCAGAGATGGGAGATATT+TGG | + | chr1_3:54043968-54043987 | Msa0125580:exon | 35.0% | |
| !! | AGATATTTGGTGGTCACTTT+TGG | + | chr1_3:54043981-54044000 | Msa0125580:CDS | 35.0% |
| !!! | GATATTTGGTGGTCACTTTT+GGG | + | chr1_3:54043982-54044001 | Msa0125580:CDS | 35.0% |
| !!! | ATATTTGGTGGTCACTTTTG+GGG | + | chr1_3:54043983-54044002 | Msa0125580:CDS | 35.0% |
| AGTTAAGAAAAGGAATGCAG+AGG | + | chr1_3:54044044-54044063 | Msa0125580:CDS | 35.0% | |
| AAGAGGATGTTGAAAAAGGT+TGG | + | chr1_3:54044144-54044163 | Msa0125580:CDS | 35.0% | |
| GTAACACAAGTATCAGGAAT+TGG | - | chr1_3:54044186-54044205 | None:intergenic | 35.0% | |
| CAAACAGTAACACAAGTATC+AGG | - | chr1_3:54044192-54044211 | None:intergenic | 35.0% | |
| ! | GATACTTGTGTTACTGTTTG+TGG | + | chr1_3:54044192-54044211 | Msa0125580:CDS | 35.0% |
| ACCAACATCAAGTACCTAAT+TGG | + | chr1_3:54044268-54044287 | Msa0125580:CDS | 35.0% | |
| TCCAATTAGGTACTTGATGT+TGG | - | chr1_3:54044272-54044291 | None:intergenic | 35.0% | |
| ! | AGACATGTGTCATTCCAATT+AGG | - | chr1_3:54044285-54044304 | None:intergenic | 35.0% |
| ATTGGAATGACACATGTCTT+AGG | + | chr1_3:54044286-54044305 | Msa0125580:CDS | 35.0% | |
| GACTAACATAGTCCACAATC+CGG | - | chr1_3:54043464-54043483 | None:intergenic | 40.0% | |
| TCGTTAGTCAAAATAGTCCC+TGG | - | chr1_3:54043617-54043636 | None:intergenic | 40.0% | |
| !!! | AGGGACTATTTTGACTAACG+AGG | + | chr1_3:54043616-54043635 | Msa0125580:intron | 40.0% |
| !!! | TATTTGGTGGTCACTTTTGG+GGG | + | chr1_3:54043984-54044003 | Msa0125580:CDS | 40.0% |
| GACTAACATAGTCCACAATC+CGG | - | chr1_3:54043464-54043483 | None:intergenic | 40.0% | |
| TCGTTAGTCAAAATAGTCCC+TGG | - | chr1_3:54043617-54043636 | None:intergenic | 40.0% | |
| !!! | AGGGACTATTTTGACTAACG+AGG | + | chr1_3:54043616-54043635 | Msa0125580:intron | 40.0% |
| !!! | TATTTGGTGGTCACTTTTGG+GGG | + | chr1_3:54043984-54044003 | Msa0125580:CDS | 40.0% |
| ATGGAAGTGAAACTAACCGG+CGG | - | chr1_3:54042943-54042962 | None:intergenic | 45.0% | |
| !!! | TGAGGGATTGTTTTAACGCC+AGG | + | chr1_3:54043596-54043615 | Msa0125580:intron | 45.0% |
| !!! | GAGGGATTGTTTTAACGCCA+GGG | + | chr1_3:54043597-54043616 | Msa0125580:intron | 45.0% |
| GAATTCGAACTCCGTCTCTT+AGG | + | chr1_3:54043797-54043816 | Msa0125580:intron | 45.0% | |
| CAGAGATGGGAGATATTTGG+TGG | + | chr1_3:54043971-54043990 | Msa0125580:exon | 45.0% | |
| AAAGGAATGCAGAGGAGCAA+AGG | + | chr1_3:54044052-54044071 | Msa0125580:CDS | 45.0% | |
| ! | AGCAAAGGTTGAAGAGTGCA+AGG | + | chr1_3:54044067-54044086 | Msa0125580:CDS | 45.0% |
| ! | GCAAAGGTTGAAGAGTGCAA+GGG | + | chr1_3:54044068-54044087 | Msa0125580:CDS | 45.0% |
| ! | CAAAGGTTGAAGAGTGCAAG+GGG | + | chr1_3:54044069-54044088 | Msa0125580:CDS | 45.0% |
| AAAGGGTCTGCACTTCAAAG+AGG | + | chr1_3:54044127-54044146 | Msa0125580:CDS | 45.0% | |
| GGAATGACACATGTCTTAGG+AGG | + | chr1_3:54044289-54044308 | Msa0125580:CDS | 45.0% | |
| CTCTTCTCAGTCTTCTCAGT+AGG | + | chr1_3:54044335-54044354 | Msa0125580:CDS | 45.0% | |
| ATGGAAGTGAAACTAACCGG+CGG | - | chr1_3:54042943-54042962 | None:intergenic | 45.0% | |
| !!! | TGAGGGATTGTTTTAACGCC+AGG | + | chr1_3:54043596-54043615 | Msa0125580:intron | 45.0% |
| !!! | GAGGGATTGTTTTAACGCCA+GGG | + | chr1_3:54043597-54043616 | Msa0125580:intron | 45.0% |
| GAATTCGAACTCCGTCTCTT+AGG | + | chr1_3:54043797-54043816 | Msa0125580:intron | 45.0% | |
| CAGAGATGGGAGATATTTGG+TGG | + | chr1_3:54043971-54043990 | Msa0125580:exon | 45.0% | |
| AAAGGAATGCAGAGGAGCAA+AGG | + | chr1_3:54044052-54044071 | Msa0125580:CDS | 45.0% | |
| ! | AGCAAAGGTTGAAGAGTGCA+AGG | + | chr1_3:54044067-54044086 | Msa0125580:CDS | 45.0% |
| ! | GCAAAGGTTGAAGAGTGCAA+GGG | + | chr1_3:54044068-54044087 | Msa0125580:CDS | 45.0% |
| ! | CAAAGGTTGAAGAGTGCAAG+GGG | + | chr1_3:54044069-54044088 | Msa0125580:CDS | 45.0% |
| AAAGGGTCTGCACTTCAAAG+AGG | + | chr1_3:54044127-54044146 | Msa0125580:CDS | 45.0% | |
| GGAATGACACATGTCTTAGG+AGG | + | chr1_3:54044289-54044308 | Msa0125580:CDS | 45.0% | |
| !! | ATTTATATATATATAGTTTA+AGG | + | chr1_3:54043353-54043372 | Msa0125580:intron | 5.0% |
| !! | ATTTATATATATATAGTTTA+AGG | + | chr1_3:54043353-54043372 | Msa0125580:intron | 5.0% |
| CTTGTCCTGCAACAACGACA+GGG | - | chr1_3:54044017-54044036 | None:intergenic | 50.0% | |
| AGAGTGCAAGGGGAAGAGAA+AGG | + | chr1_3:54044079-54044098 | Msa0125580:CDS | 50.0% | |
| TGCTGAAGCTTGTGCTCGTA+CGG | + | chr1_3:54044236-54044255 | Msa0125580:CDS | 50.0% | |
| CTTGTCCTGCAACAACGACA+GGG | - | chr1_3:54044017-54044036 | None:intergenic | 50.0% | |
| AGAGTGCAAGGGGAAGAGAA+AGG | + | chr1_3:54044079-54044098 | Msa0125580:CDS | 50.0% | |
| TGCTGAAGCTTGTGCTCGTA+CGG | + | chr1_3:54044236-54044255 | Msa0125580:CDS | 50.0% | |
| GAAGTGAAACTAACCGGCGG+TGG | - | chr1_3:54042940-54042959 | None:intergenic | 55.0% | |
| GCTTGTCCTGCAACAACGAC+AGG | - | chr1_3:54044018-54044037 | None:intergenic | 55.0% | |
| GAAGTGAAACTAACCGGCGG+TGG | - | chr1_3:54042940-54042959 | None:intergenic | 55.0% | |
| GCTTGTCCTGCAACAACGAC+AGG | - | chr1_3:54044018-54044037 | None:intergenic | 55.0% | |
| !! | GGTGGCGGAGAAAGAGAAGG+CGG | - | chr1_3:54042922-54042941 | None:intergenic | 60.0% |
| TTCTCTTTCTCCGCCACCGC+CGG | + | chr1_3:54042924-54042943 | Msa0125580:five_prime_UTR | 60.0% | |
| GTGAAACTAACCGGCGGTGG+CGG | - | chr1_3:54042937-54042956 | None:intergenic | 60.0% | |
| GCAGTCCCTGTCGTTGTTGC+AGG | + | chr1_3:54044009-54044028 | Msa0125580:CDS | 60.0% | |
| !! | GGTGGCGGAGAAAGAGAAGG+CGG | - | chr1_3:54042922-54042941 | None:intergenic | 60.0% |
| TTCTCTTTCTCCGCCACCGC+CGG | + | chr1_3:54042924-54042943 | Msa0125580:five_prime_UTR | 60.0% | |
| GTGAAACTAACCGGCGGTGG+CGG | - | chr1_3:54042937-54042956 | None:intergenic | 60.0% | |
| GCAGTCCCTGTCGTTGTTGC+AGG | + | chr1_3:54044009-54044028 | Msa0125580:CDS | 60.0% | |
| !! | GGCGGTGGCGGAGAAAGAGA+AGG | - | chr1_3:54042925-54042944 | None:intergenic | 65.0% |
| !! | GGCGGTGGCGGAGAAAGAGA+AGG | - | chr1_3:54042925-54042944 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54042860 | 54044356 | 54042860 | ID=Msa0125580;Name=Msa0125580 |
| chr1_3 | mRNA | 54042860 | 54044356 | 54042860 | ID=Msa0125580-mRNA-1;Parent=Msa0125580;Name=Msa0125580-mRNA-1;_AED=0.18;_eAED=0.20;_QI=94|0|0.5|1|0|0|2|0|126 |
| chr1_3 | exon | 54042860 | 54042945 | 54042860 | ID=Msa0125580-mRNA-1:exon:16626;Parent=Msa0125580-mRNA-1 |
| chr1_3 | exon | 54043968 | 54044356 | 54043968 | ID=Msa0125580-mRNA-1:exon:16627;Parent=Msa0125580-mRNA-1 |
| chr1_3 | five_prime_UTR | 54042860 | 54042945 | 54042860 | ID=Msa0125580-mRNA-1:five_prime_utr;Parent=Msa0125580-mRNA-1 |
| chr1_3 | five_prime_UTR | 54043968 | 54043975 | 54043968 | ID=Msa0125580-mRNA-1:five_prime_utr;Parent=Msa0125580-mRNA-1 |
| chr1_3 | CDS | 54043976 | 54044356 | 54043976 | ID=Msa0125580-mRNA-1:cds;Parent=Msa0125580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
