AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1315980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315980 MtrunA17_Chr8g0345871 98.082 365 7 0 1 365 1 365 0.0 738
Msa1315980 MtrunA17_Chr3g0132471 48.085 235 104 4 142 358 75 309 1.29e-68 218
Msa1315980 MtrunA17_Chr7g0273081 50.698 215 96 2 157 361 92 306 1.38e-67 215
Msa1315980 MtrunA17_Chr0c01g0489461 54.091 220 80 5 162 362 176 393 5.15e-66 214
Msa1315980 MtrunA17_Chr1g0191571 52.475 202 82 3 174 361 129 330 3.35e-63 205
Msa1315980 MtrunA17_Chr8g0366551 50.739 203 85 3 171 361 114 313 3.08e-61 199
Msa1315980 MtrunA17_Chr5g0426851 46.330 218 95 4 157 357 76 288 2.71e-59 193
Msa1315980 MtrunA17_Chr2g0287761 44.920 187 94 2 181 359 1 186 1.62e-42 147
Msa1315980 MtrunA17_Chr1g0158941 35.841 226 115 5 162 358 68 292 2.09e-36 133
Msa1315980 MtrunA17_Chr3g0126381 34.848 198 75 7 213 358 4 199 1.01e-20 89.0
Msa1315980 MtrunA17_Chr1g0185621 27.419 186 125 4 183 360 476 659 8.74e-14 72.8
Msa1315980 MtrunA17_Chr3g0126361 55.932 59 22 1 158 212 74 132 3.36e-13 66.6
Msa1315980 MtrunA17_Chr5g0400621 28.859 149 101 2 183 331 158 301 1.65e-11 64.7
Msa1315980 MtrunA17_Chr2g0333621 27.072 181 126 4 179 358 135 310 5.28e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315980 AT3G61950.1 43.523 386 157 10 1 358 1 353 8.54e-84 259
Msa1315980 AT2G46810.1 43.603 383 142 12 15 358 22 369 1.28e-80 251
Msa1315980 AT2G46810.3 43.216 398 145 14 1 358 1 357 2.22e-80 250
Msa1315980 AT3G61950.3 43.169 366 147 10 1 338 1 333 1.90e-75 237
Msa1315980 AT2G46810.2 43.675 332 128 9 51 358 1 297 2.06e-73 230
Msa1315980 AT4G01460.1 43.844 333 131 6 40 363 20 305 4.18e-70 222
Msa1315980 AT4G01460.2 43.844 333 131 6 40 363 20 305 4.18e-70 222
Msa1315980 AT3G61950.2 43.072 332 135 7 51 358 1 302 5.35e-70 222
Msa1315980 AT2G46810.4 40.278 360 128 10 51 358 1 325 2.19e-67 216
Msa1315980 AT3G24140.2 51.351 222 87 3 161 362 177 397 3.02e-62 204
Msa1315980 AT3G24140.1 51.351 222 87 3 161 362 177 397 4.81e-62 204
Msa1315980 AT3G61950.6 42.628 312 125 7 51 338 1 282 1.57e-61 199
Msa1315980 AT1G22490.1 50.990 202 82 3 171 361 105 300 3.80e-59 194
Msa1315980 AT1G72210.1 50.500 200 89 3 171 361 115 313 2.42e-58 192
Msa1315980 AT1G22490.2 51.397 179 70 3 171 338 105 277 1.55e-51 174
Msa1315980 AT1G72210.2 50.282 177 78 3 171 338 115 290 6.45e-51 172
Msa1315980 AT5G46690.1 45.946 222 89 4 171 361 78 299 3.14e-46 160
Msa1315980 AT3G06120.1 44.134 179 85 3 181 344 1 179 1.62e-39 139
Msa1315980 AT3G61950.4 40.084 237 89 7 1 212 1 209 1.55e-38 137
Msa1315980 AT3G61950.5 40.084 237 89 7 1 212 1 209 1.55e-38 137
Msa1315980 AT5G65320.1 42.487 193 101 4 175 357 96 288 1.65e-38 139
Msa1315980 AT5G46690.2 45.226 199 78 4 171 338 78 276 9.78e-37 135
Msa1315980 AT5G65320.2 42.775 173 90 3 175 338 96 268 3.66e-32 122
Msa1315980 AT5G53210.2 63.889 72 25 1 172 243 94 164 1.99e-24 102
Msa1315980 AT5G53210.1 63.889 72 25 1 172 243 94 164 2.28e-24 102
Msa1315980 AT5G53210.1 40.000 90 53 1 269 358 275 363 1.18e-11 65.9
Msa1315980 AT1G12860.2 30.909 165 97 5 183 338 268 424 1.53e-12 68.9
Msa1315980 AT3G26744.6 30.357 168 98 5 183 338 308 468 1.55e-12 68.9
Msa1315980 AT3G26744.1 30.857 175 99 6 183 345 308 472 1.93e-12 68.6
Msa1315980 AT3G26744.4 30.857 175 99 6 183 345 308 472 1.93e-12 68.6
Msa1315980 AT3G26744.2 30.857 175 99 6 183 345 308 472 1.93e-12 68.6
Msa1315980 AT1G12860.1 31.677 161 93 5 183 334 268 420 2.20e-12 68.6
Msa1315980 AT2G16910.1 30.102 196 101 9 183 355 315 497 4.39e-11 64.7

Find 108 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCACTCTGTTTATTAAT+TGG 0.164311 8_4:+15636759 Msa1315980:three_prime_UTR
TGTGTTGCTTATTAATTTCT+TGG 0.165983 8_4:+15636817 Msa1315980:three_prime_UTR
AAAGGTGGAAACTTCTTAAA+TGG 0.167879 8_4:-15632498 None:intergenic
CTCATTGTGACTTGAGTTTC+AGG 0.170446 8_4:+15636914 Msa1315980:three_prime_UTR
TCTTATTCCGCTTCTTCTTA+TGG 0.206056 8_4:+15632738 Msa1315980:five_prime_UTR
ACTTGTTGTGAATCCATTCT+AGG 0.226170 8_4:-15633527 None:intergenic
TGTAAGGTCCCAAGCATTAT+TGG 0.260136 8_4:-15632376 None:intergenic
CTTTCATGAATTGAGAAATT+AGG 0.271280 8_4:+15636842 Msa1315980:three_prime_UTR
ACATCTTCCTTATTCTTAAC+TGG 0.278715 8_4:-15633770 None:intergenic
AACAAGACCAGTTAAGAATA+AGG 0.304290 8_4:+15633763 Msa1315980:CDS
TTGTTGCTTTGGAAAATCTT+AGG 0.306717 8_4:+15634589 Msa1315980:CDS
CTTTGAAGCATTTGAAGAAA+TGG 0.310096 8_4:-15633404 None:intergenic
GATAAAGGTTATTGTTGCTT+TGG 0.325174 8_4:+15634578 Msa1315980:CDS
TCACCTGCGATTGATATATA+TGG 0.325316 8_4:+15636873 Msa1315980:three_prime_UTR
TGTTGTTCCTTGTTGAGATT+TGG 0.330133 8_4:-15633717 None:intergenic
TGAGATGTATCATGTTAATT+AGG 0.334165 8_4:+15636683 Msa1315980:three_prime_UTR
GATATATGTAGACAAGAAAA+TGG 0.348977 8_4:-15636656 None:intergenic
GGTGACCAAGCATCAATAAT+TGG 0.351169 8_4:+15634303 Msa1315980:CDS
TAAAGTGTGGCTGGGGTGAC+GGG 0.356668 8_4:+15636621 Msa1315980:three_prime_UTR
GTAAAGTGTGGCTGGGGTGA+CGG 0.367312 8_4:+15636620 Msa1315980:three_prime_UTR
ACTCATAAGATGTGATGTTT+AGG 0.372626 8_4:-15634626 None:intergenic
ATGACCACCTTAGTGTTCTT+AGG 0.380570 8_4:+15633849 Msa1315980:CDS
CACTAAGGTGGTCATTCATT+TGG 0.381725 8_4:-15633841 None:intergenic
GTAGCTCACAAAATAGAGAT+AGG 0.382254 8_4:+15636705 Msa1315980:three_prime_UTR
TTTGTTCATCAAGTAATGTT+TGG 0.386937 8_4:-15633325 None:intergenic
AGCTATAAGCCTAAAACCTT+GGG 0.391798 8_4:+15636543 Msa1315980:three_prime_UTR
ATATTGCTGTTGAACGTAAT+AGG 0.401299 8_4:+15633813 Msa1315980:CDS
GGATGGTGGTAAAGTGTGGC+TGG 0.403422 8_4:+15636612 Msa1315980:three_prime_UTR
CTCCTCCAATTATTGATGCT+TGG 0.405749 8_4:-15634308 None:intergenic
AAGGTGGAAACTTCTTAAAT+GGG 0.406058 8_4:-15632497 None:intergenic
AAAGGCTGGTCAATTGATAA+AGG 0.417902 8_4:+15634563 Msa1315980:CDS
CATAGCTTACATTCCTAGAA+TGG 0.419943 8_4:+15633514 Msa1315980:CDS
GGGTTGTTGCAGAAGAATAA+AGG 0.421184 8_4:+15636572 Msa1315980:three_prime_UTR
AATACATACACAAGAATTGA+TGG 0.427991 8_4:-15632901 None:intergenic
GCTGGGGTGACGGGGAACAT+AGG 0.430744 8_4:+15636630 Msa1315980:three_prime_UTR
TTGATCATGGAGAGGCTTCA+AGG 0.435947 8_4:+15632876 Msa1315980:exon
GAGACTTAAGAGTTGTTTGT+TGG 0.450047 8_4:+15632615 Msa1315980:five_prime_UTR
ATATTCAGCTACATCAATAA+TGG 0.454301 8_4:+15636503 Msa1315980:CDS
TAGCTATAAGCCTAAAACCT+TGG 0.457228 8_4:+15636542 Msa1315980:three_prime_UTR
TCATCATCACCACCTAGTTA+TGG 0.465171 8_4:+15634423 Msa1315980:CDS
CATATACACCACTTTGATCA+TGG 0.467083 8_4:+15632863 Msa1315980:exon
TGCCATCTTCATATGTTCAA+AGG 0.473511 8_4:+15633879 Msa1315980:CDS
TTATTAATTGGAATGTTAGT+TGG 0.476712 8_4:+15636771 Msa1315980:three_prime_UTR
GAAGGGTTGTCTGATTTGTA+AGG 0.479576 8_4:-15632392 None:intergenic
GAATAATACCTTGAGATTGA+AGG 0.480462 8_4:-15634664 None:intergenic
CACACCCCGCCAATAATGCT+TGG 0.481463 8_4:+15632367 Msa1315980:five_prime_UTR
GCCATCTTCATATGTTCAAA+GGG 0.484046 8_4:+15633880 Msa1315980:CDS
ACAAAGTTTGAGATTTGAAG+AGG 0.495050 8_4:+15633343 Msa1315980:CDS
AAGCTAGGATATATATTTGA+AGG 0.498992 8_4:-15632452 None:intergenic
CTGGGGTGACGGGGAACATA+GGG 0.501084 8_4:+15636631 Msa1315980:three_prime_UTR
TTGTTGCTTTCTGATTTCAC+TGG 0.503766 8_4:-15633611 None:intergenic
ACACCCCGCCAATAATGCTT+GGG 0.505644 8_4:+15632368 Msa1315980:five_prime_UTR
GATGGTGGTAAAGTGTGGCT+GGG 0.510848 8_4:+15636613 Msa1315980:three_prime_UTR
TTGTGATGAAAATGAGGTAA+AGG 0.510975 8_4:+15634461 Msa1315980:CDS
GATAATTTCATTCCATAACT+AGG 0.511449 8_4:-15634435 None:intergenic
AGCATTATTGGCGGGGTGTG+TGG 0.511877 8_4:-15632364 None:intergenic
AAAGGACAAAGAATCATTGA+AGG 0.514337 8_4:+15636590 Msa1315980:three_prime_UTR
ATGGATTCACAACAAGTTCA+AGG 0.515635 8_4:+15633533 Msa1315980:CDS
AGGTCCCAAGCATTATTGGC+GGG 0.517224 8_4:-15632372 None:intergenic
TAAAAGAAGCAGAGGGATTG+TGG 0.519536 8_4:-15632530 None:intergenic
AATGCTTTAGCTTTCAATGA+GGG 0.528738 8_4:-15632821 None:intergenic
ATCACCTTGTGATGAAAATG+AGG 0.542525 8_4:+15634455 Msa1315980:CDS
ATGGTGGTAAAGTGTGGCTG+GGG 0.542787 8_4:+15636614 Msa1315980:three_prime_UTR
ACCCTTTGAACATATGAAGA+TGG 0.543479 8_4:-15633881 None:intergenic
GATTTATACTAACAAAAGAA+TGG 0.544282 8_4:-15632775 None:intergenic
GAGATATGCTAGGCTAAGCT+AGG 0.547596 8_4:-15632467 None:intergenic
CTGTGTAACACAAGAAATGT+TGG 0.548016 8_4:+15633577 Msa1315980:CDS
ATCATTACCATACGGAATGT+TGG 0.549626 8_4:+15632795 Msa1315980:five_prime_UTR
TTTGGGGTATTACTCATATG+GGG 0.549873 8_4:+15632715 Msa1315980:five_prime_UTR
ATTGAAGAAGACTGTAAGCT+AGG 0.552236 8_4:+15636446 Msa1315980:CDS
TAGCTCACAAAATAGAGATA+GGG 0.552277 8_4:+15636706 Msa1315980:three_prime_UTR
TAACCATATATATCAATCGC+AGG 0.570573 8_4:-15636876 None:intergenic
TGTAAAACCATAAGAAGAAG+CGG 0.577295 8_4:-15632745 None:intergenic
ACAAAGAATCATTGAAGGGA+TGG 0.580460 8_4:+15636595 Msa1315980:three_prime_UTR
TAGTATAAATCATTACCATA+CGG 0.581644 8_4:+15632787 Msa1315980:five_prime_UTR
ATGTAAGCTATGTCTTCCCA+TGG 0.586787 8_4:-15633503 None:intergenic
AAGGTCCCAAGCATTATTGG+CGG 0.592576 8_4:-15632373 None:intergenic
ACAAGTTCAAGGCGCAACAT+TGG 0.592711 8_4:+15633544 Msa1315980:CDS
AAAGTGTGGCTGGGGTGACG+GGG 0.594048 8_4:+15636622 Msa1315980:three_prime_UTR
TATAAGCCTAAAACCTTGGG+GGG 0.596096 8_4:+15636546 Msa1315980:three_prime_UTR
AAGCCTCTCCATGATCAAAG+TGG 0.604207 8_4:-15632871 None:intergenic
TAATGCTTTAGCTTTCAATG+AGG 0.607199 8_4:-15632822 None:intergenic
TAAGAGACCTAAGAACACTA+AGG 0.612418 8_4:-15633856 None:intergenic
AAGAATCATTGAAGGGATGG+TGG 0.614094 8_4:+15636598 Msa1315980:three_prime_UTR
TTGTGGTAAGAAATGAAAGG+TGG 0.615297 8_4:-15632513 None:intergenic
AGGTGGAAACTTCTTAAATG+GGG 0.615676 8_4:-15632496 None:intergenic
ACTCTACTCCTTCAATCTCA+AGG 0.617899 8_4:+15634656 Msa1315980:CDS
TGTTGATCTAAAAGAAGCAG+AGG 0.618907 8_4:-15632538 None:intergenic
ATACATACACAAGAATTGAT+GGG 0.621363 8_4:-15632900 None:intergenic
AGGGTGACCAACATTCCGTA+TGG 0.622271 8_4:-15632802 None:intergenic
GGTCCCAAGCATTATTGGCG+GGG 0.624353 8_4:-15632371 None:intergenic
AAGGACAAAGAATCATTGAA+GGG 0.624798 8_4:+15636591 Msa1315980:three_prime_UTR
CTATAAGCCTAAAACCTTGG+GGG 0.634648 8_4:+15636545 Msa1315980:three_prime_UTR
ACTCTTAAGTCTCACAACAA+AGG 0.637326 8_4:-15632605 None:intergenic
GACCAAGCATCAATAATTGG+AGG 0.640978 8_4:+15634306 Msa1315980:CDS
AGGTGTGTGTGAGAGAGAGT+TGG 0.641221 8_4:-15632432 None:intergenic
GGGGTTGCAAGAGATATGCT+AGG 0.641732 8_4:-15632477 None:intergenic
GTTGATCTAAAAGAAGCAGA+GGG 0.643371 8_4:-15632537 None:intergenic
AATCTCAACAAGGAACAACA+AGG 0.648093 8_4:+15633720 Msa1315980:CDS
AGGTGGTGATGATGATGATG+AGG 0.648803 8_4:-15634415 None:intergenic
GCTATAAGCCTAAAACCTTG+GGG 0.651985 8_4:+15636544 Msa1315980:three_prime_UTR
ACACCACTTTGATCATGGAG+AGG 0.659194 8_4:+15632868 Msa1315980:exon
ATCTCAACAAGGAACAACAA+GGG 0.668773 8_4:+15633721 Msa1315980:CDS
AATTTCATTCCATAACTAGG+TGG 0.671528 8_4:-15634432 None:intergenic
GAGACCTAAGAACACTAAGG+TGG 0.679484 8_4:-15633853 None:intergenic
TCATGTTCCAAATCTCAACA+AGG 0.700363 8_4:+15633710 Msa1315980:CDS
GGATTGTGGTAAGAAATGAA+AGG 0.708938 8_4:-15632516 None:intergenic
GAAGGGATGGTGGTAAAGTG+TGG 0.727137 8_4:+15636608 Msa1315980:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTAATAATTAATT+AGG - chr8_4:15635687-15635706 None:intergenic 0.0%
!!! TTTAATTTAAATAATTAATT+AGG + chr8_4:15636049-15636068 Msa1315980:intron 0.0%
!!! AATTTTAATAATTAATTAGG+TGG - chr8_4:15635684-15635703 None:intergenic 10.0%
!! AATTTAAATAATTAATTAGG+TGG + chr8_4:15636052-15636071 Msa1315980:intron 10.0%
!! AAACAACTATTAAAAAAATT+AGG - chr8_4:15636271-15636290 None:intergenic 10.0%
!!! AAACAAAAGAGTATATTTTT+TGG + chr8_4:15632697-15632716 Msa1315980:five_prime_UTR 15.0%
!!! AACAAAAGAGTATATTTTTT+GGG + chr8_4:15632698-15632717 Msa1315980:five_prime_UTR 15.0%
!!! ATTACATATTTTTTTTCTCT+TGG + chr8_4:15632942-15632961 Msa1315980:intron 15.0%
!! TAAATAATTCAAAAGAAGTA+AGG - chr8_4:15633187-15633206 None:intergenic 15.0%
!!! AAAATTTTCAAACACTTTTA+AGG + chr8_4:15633462-15633481 Msa1315980:CDS 15.0%
!!! TTATGTTTTAAAAATCACTT+AGG + chr8_4:15634229-15634248 Msa1315980:intron 15.0%
!!! TAAAAAAGAATGAAGATTTT+GGG + chr8_4:15634391-15634410 Msa1315980:CDS 15.0%
!! TTTATAATGATAAACAATGT+TGG - chr8_4:15634828-15634847 None:intergenic 15.0%
!!! ATTTTTTTCATTTATGTGTA+TGG - chr8_4:15635160-15635179 None:intergenic 15.0%
!! AAAATGTGTTTAATACAATA+TGG - chr8_4:15635410-15635429 None:intergenic 15.0%
!!! AAAATTCTGAGTTTTAAAAT+GGG - chr8_4:15636133-15636152 None:intergenic 15.0%
!!! TAAAATTCTGAGTTTTAAAA+TGG - chr8_4:15636132-15636151 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr8_4:15635933-15635952 None:intergenic 15.0%
!! AATTCCGAAAAATATTAAAT+TGG + chr8_4:15636104-15636123 Msa1315980:intron 15.0%
!! ATTCCGAAAAATATTAAATT+GGG + chr8_4:15636105-15636124 Msa1315980:intron 15.0%
!!! AAAATTCTGAGTTTTAAAAT+AGG + chr8_4:15636133-15636152 Msa1315980:intron 15.0%
!!! AAATTCTGAGTTTTAAAATA+GGG + chr8_4:15636134-15636153 Msa1315980:intron 15.0%
!!! AGTACTAACTAAATTTTTTA+AGG + chr8_4:15636332-15636351 Msa1315980:intron 15.0%
!!! TAAATTTTCTCTAAGATTAA+TGG + chr8_4:15636978-15636997 Msa1315980:three_prime_UTR 15.0%
!!! ACAAAAGAGTATATTTTTTG+GGG + chr8_4:15632699-15632718 Msa1315980:five_prime_UTR 20.0%
!! GATTTATACTAACAAAAGAA+TGG - chr8_4:15632778-15632797 None:intergenic 20.0%
!! TAGTATAAATCATTACCATA+CGG + chr8_4:15632787-15632806 Msa1315980:five_prime_UTR 20.0%
!!! AGAAGAGAAATGTAATTTTT+AGG - chr8_4:15633057-15633076 None:intergenic 20.0%
!! AATATATGCTTTAATGAATG+AGG - chr8_4:15633164-15633183 None:intergenic 20.0%
!!! TGAAAATTTTGTTCTTTCAA+AGG - chr8_4:15633452-15633471 None:intergenic 20.0%
!!! GTTAAAAATCCAATCTTTTT+TGG + chr8_4:15633989-15634008 Msa1315980:intron 20.0%
!! TATACAAAACCAAAAAAGAT+TGG - chr8_4:15634001-15634020 None:intergenic 20.0%
!!! TTTTTTGGTTTTGTATACAA+GGG + chr8_4:15634004-15634023 Msa1315980:intron 20.0%
!! TTGTTTAATGTTTATGTGAT+AGG + chr8_4:15634281-15634300 Msa1315980:intron 20.0%
!! TGTTTAATGTTTATGTGATA+GGG + chr8_4:15634282-15634301 Msa1315980:intron 20.0%
!!! GTAAAAAAGAATGAAGATTT+TGG + chr8_4:15634390-15634409 Msa1315980:CDS 20.0%
!!! AAATTCCGAGTTTTAAAATA+GGG - chr8_4:15636194-15636213 None:intergenic 20.0%
!!! AAAATTCCGAGTTTTAAAAT+AGG - chr8_4:15636193-15636212 None:intergenic 20.0%
!! ATTCCGAAAAACATTAAATT+GGG - chr8_4:15636165-15636184 None:intergenic 20.0%
!! AATTCCGAAAAACATTAAAT+TGG - chr8_4:15636164-15636183 None:intergenic 20.0%
!!! AAATTCTGAGTTTTAAAATG+GGG - chr8_4:15635602-15635621 None:intergenic 20.0%
!!! AGTTTTTTTTCTGCATTTTA+AGG - chr8_4:15635771-15635790 None:intergenic 20.0%
!! AGCAAATAAAGATAAAATGT+AGG + chr8_4:15635791-15635810 Msa1315980:intron 20.0%
!!! AGTATTTTTTCTGCATTTTA+AGG + chr8_4:15635851-15635870 Msa1315980:intron 20.0%
!!! GAATTTTTTTCTGCATTTTA+AGG + chr8_4:15635964-15635983 Msa1315980:intron 20.0%
!! TTCCGAAAAATATTAAATTG+GGG + chr8_4:15636106-15636125 Msa1315980:intron 20.0%
!!! AATTCTGAGTTTTAAAATAG+GGG + chr8_4:15636135-15636154 Msa1315980:intron 20.0%
!! AATTCCGAAAAACATTAAAT+TGG + chr8_4:15636164-15636183 Msa1315980:intron 20.0%
!! ATTCCGAAAAACATTAAATT+GGG + chr8_4:15636165-15636184 Msa1315980:intron 20.0%
!!! AAAATTCCGAGTTTTAAAAT+AGG + chr8_4:15636193-15636212 Msa1315980:intron 20.0%
!!! AAATTCCGAGTTTTAAAATA+GGG + chr8_4:15636194-15636213 Msa1315980:intron 20.0%
!! TTATTAATTGGAATGTTAGT+TGG + chr8_4:15636771-15636790 Msa1315980:three_prime_UTR 20.0%
! AAGCTAGGATATATATTTGA+AGG - chr8_4:15632455-15632474 None:intergenic 25.0%
! ATACATACACAAGAATTGAT+GGG - chr8_4:15632903-15632922 None:intergenic 25.0%
! AATACATACACAAGAATTGA+TGG - chr8_4:15632904-15632923 None:intergenic 25.0%
! CCTTTCTTAATTCTACAAAT+AGG - chr8_4:15632975-15632994 None:intergenic 25.0%
! CCTATTTGTAGAATTAAGAA+AGG + chr8_4:15632972-15632991 Msa1315980:intron 25.0%
! TTAATGAATGAGGATGAATT+TGG - chr8_4:15633154-15633173 None:intergenic 25.0%
! CTGAAAAAAGATGTGTTAAT+TGG - chr8_4:15633279-15633298 None:intergenic 25.0%
! TTTGTTCATCAAGTAATGTT+TGG - chr8_4:15633328-15633347 None:intergenic 25.0%
! TTCAACATATGAAAAAACCA+TGG + chr8_4:15633486-15633505 Msa1315980:CDS 25.0%
! TCAACATATGAAAAAACCAT+GGG + chr8_4:15633487-15633506 Msa1315980:CDS 25.0%
!!! AGAAAGGATTTTGAAGAAAA+GGG - chr8_4:15633955-15633974 None:intergenic 25.0%
!!! AAGAAAGGATTTTGAAGAAA+AGG - chr8_4:15633956-15633975 None:intergenic 25.0%
! ACATGAAAATCTCAAAAGAA+AGG - chr8_4:15633971-15633990 None:intergenic 25.0%
!!! CTTTTTTGGTTTTGTATACA+AGG + chr8_4:15634003-15634022 Msa1315980:intron 25.0%
!!! AATTGATTTTGTGAAAGAGT+TGG + chr8_4:15634332-15634351 Msa1315980:CDS 25.0%
! GATAATTTCATTCCATAACT+AGG - chr8_4:15634438-15634457 None:intergenic 25.0%
! GAAAATTGAGTGCAAAAAAA+AGG + chr8_4:15634545-15634564 Msa1315980:CDS 25.0%
! AACATTAGAGAAATAAGAAG+TGG - chr8_4:15635039-15635058 None:intergenic 25.0%
! ATAGAACACACTATTTGAAA+GGG + chr8_4:15635072-15635091 Msa1315980:intron 25.0%
! CATCAGGATATTACATAATT+AGG + chr8_4:15635237-15635256 Msa1315980:intron 25.0%
!!! AATTCCGAGTTTTAAAATAG+GGG - chr8_4:15636195-15636214 None:intergenic 25.0%
! TTCCGAAAAACATTAAATTG+GGG - chr8_4:15636166-15636185 None:intergenic 25.0%
!!! AATTCTGAGTTTTAAAATGG+GGG - chr8_4:15635601-15635620 None:intergenic 25.0%
! TCCGAAAAACATTAAATTGA+GGG - chr8_4:15635629-15635648 None:intergenic 25.0%
! TTCCGAAAAACATTAAATTG+AGG - chr8_4:15636166-15636185 None:intergenic 25.0%
! ATAATAAGATAATGTGGTAG+AGG + chr8_4:15636075-15636094 Msa1315980:intron 25.0%
! TAATAAGATAATGTGGTAGA+GGG + chr8_4:15636076-15636095 Msa1315980:intron 25.0%
!! CACCCCAATTTAATATTTTT+CGG - chr8_4:15636111-15636130 None:intergenic 25.0%
!!! ATTCTGAGTTTTAAAATAGG+GGG + chr8_4:15636136-15636155 Msa1315980:intron 25.0%
! TTCCGAAAAACATTAAATTG+GGG + chr8_4:15636166-15636185 Msa1315980:intron 25.0%
!!! AATTCCGAGTTTTAAAATAG+GGG + chr8_4:15636195-15636214 Msa1315980:intron 25.0%
! TAAATAACGAGCTGTATATA+TGG + chr8_4:15636392-15636411 Msa1315980:intron 25.0%
! AAATAACGAGCTGTATATAT+GGG + chr8_4:15636415-15636434 Msa1315980:intron 25.0%
! ATATTCAGCTACATCAATAA+TGG + chr8_4:15636503-15636522 Msa1315980:CDS 25.0%
! GATATATGTAGACAAGAAAA+TGG - chr8_4:15636659-15636678 None:intergenic 25.0%
! TGAGATGTATCATGTTAATT+AGG + chr8_4:15636683-15636702 Msa1315980:three_prime_UTR 25.0%
! GTTTCACTCTGTTTATTAAT+TGG + chr8_4:15636759-15636778 Msa1315980:three_prime_UTR 25.0%
!!! TGTGTTGCTTATTAATTTCT+TGG + chr8_4:15636817-15636836 Msa1315980:three_prime_UTR 25.0%
! CTTTCATGAATTGAGAAATT+AGG + chr8_4:15636842-15636861 Msa1315980:three_prime_UTR 25.0%
AAGGTGGAAACTTCTTAAAT+GGG - chr8_4:15632500-15632519 None:intergenic 30.0%
AAAGGTGGAAACTTCTTAAA+TGG - chr8_4:15632501-15632520 None:intergenic 30.0%
!!! TTTTTGGGGTATTACTCATA+TGG + chr8_4:15632713-15632732 Msa1315980:five_prime_UTR 30.0%
!!! TTTTGGGGTATTACTCATAT+GGG + chr8_4:15632714-15632733 Msa1315980:five_prime_UTR 30.0%
TGTAAAACCATAAGAAGAAG+CGG - chr8_4:15632748-15632767 None:intergenic 30.0%
!! AATGCTTTAGCTTTCAATGA+GGG - chr8_4:15632824-15632843 None:intergenic 30.0%
!! TAATGCTTTAGCTTTCAATG+AGG - chr8_4:15632825-15632844 None:intergenic 30.0%
! AATTTGGAGTTTGGTAAGAA+TGG - chr8_4:15633138-15633157 None:intergenic 30.0%
AGAAAAAGTGAAGTAGTGTT+TGG - chr8_4:15633235-15633254 None:intergenic 30.0%
!!! CACATCTTTTTTCAGTTCTT+TGG + chr8_4:15633284-15633303 Msa1315980:intron 30.0%
! ACAAAGTTTGAGATTTGAAG+AGG + chr8_4:15633343-15633362 Msa1315980:CDS 30.0%
!! CTTTGAAGCATTTGAAGAAA+TGG - chr8_4:15633407-15633426 None:intergenic 30.0%
TCTTTCAAAGGAAAAAACTG+TGG - chr8_4:15633440-15633459 None:intergenic 30.0%
!!! CTGTTTTTGTTTCTTCTTGT+TGG - chr8_4:15633685-15633704 None:intergenic 30.0%
AACAAGACCAGTTAAGAATA+AGG + chr8_4:15633763-15633782 Msa1315980:CDS 30.0%
ACATCTTCCTTATTCTTAAC+TGG - chr8_4:15633773-15633792 None:intergenic 30.0%
! ATATTGCTGTTGAACGTAAT+AGG + chr8_4:15633813-15633832 Msa1315980:CDS 30.0%
AATCTCTTGAAGCACAAAAA+AGG + chr8_4:15634367-15634386 Msa1315980:CDS 30.0%
ATCTCTTGAAGCACAAAAAA+GGG + chr8_4:15634368-15634387 Msa1315980:CDS 30.0%
AATTTCATTCCATAACTAGG+TGG - chr8_4:15634435-15634454 None:intergenic 30.0%
! TTTACCTCATTTTCATCACA+AGG - chr8_4:15634462-15634481 None:intergenic 30.0%
TTGTGATGAAAATGAGGTAA+AGG + chr8_4:15634461-15634480 Msa1315980:CDS 30.0%
!!! CTCAATTTTCAAGTTCACAT+GGG - chr8_4:15634535-15634554 None:intergenic 30.0%
!!! ACTCAATTTTCAAGTTCACA+TGG - chr8_4:15634536-15634555 None:intergenic 30.0%
! GATAAAGGTTATTGTTGCTT+TGG + chr8_4:15634578-15634597 Msa1315980:CDS 30.0%
!! TTGTTGCTTTGGAAAATCTT+AGG + chr8_4:15634589-15634608 Msa1315980:CDS 30.0%
ACTCATAAGATGTGATGTTT+AGG - chr8_4:15634629-15634648 None:intergenic 30.0%
GAATAATACCTTGAGATTGA+AGG - chr8_4:15634667-15634686 None:intergenic 30.0%
CATAGAACACACTATTTGAA+AGG + chr8_4:15635071-15635090 Msa1315980:intron 30.0%
TAGAACACACTATTTGAAAG+GGG + chr8_4:15635073-15635092 Msa1315980:intron 30.0%
TATTTATTCATCTGCACATC+AGG + chr8_4:15635221-15635240 Msa1315980:intron 30.0%
!! TTCAGCTACTTTCTAGATTT+TGG + chr8_4:15635376-15635395 Msa1315980:intron 30.0%
ATTCCGATTCAGTCAAAATA+GGG - chr8_4:15636225-15636244 None:intergenic 30.0%
AATTCCGATTCAGTCAAAAT+AGG - chr8_4:15636224-15636243 None:intergenic 30.0%
!!! ATTCCGAGTTTTAAAATAGG+GGG - chr8_4:15636196-15636215 None:intergenic 30.0%
TCCGAAAAACATTAAATTGG+GGG - chr8_4:15636167-15636186 None:intergenic 30.0%
!!! ATTCTGAGTTTTAAAATGGG+GGG - chr8_4:15635600-15635619 None:intergenic 30.0%
CGAAAAACATTAAATTGAGG+GGG - chr8_4:15635627-15635646 None:intergenic 30.0%
CCGAAAAACATTAAATTGAG+GGG - chr8_4:15635628-15635647 None:intergenic 30.0%
! CCCCTCAATTTAATGTTTTT+CGG + chr8_4:15635625-15635644 Msa1315980:intron 30.0%
! TAATAAGATAATGTGGTGGA+GGG - chr8_4:15635660-15635679 None:intergenic 30.0%
ATAATAAGATAATGTGGTGG+AGG - chr8_4:15635661-15635680 None:intergenic 30.0%
TGGATAATAAGATAATGTGG+TGG - chr8_4:15636072-15636091 None:intergenic 30.0%
AGGTGGATAATAAGATAATG+TGG - chr8_4:15636069-15636088 None:intergenic 30.0%
AGGTGGATAATAAGATAATG+TGG + chr8_4:15636069-15636088 Msa1315980:intron 30.0%
CGAAAAATATTAAATTGGGG+TGG + chr8_4:15636109-15636128 Msa1315980:intron 30.0%
!!! TTCTGAGTTTTAAAATAGGG+GGG + chr8_4:15636137-15636156 Msa1315980:intron 30.0%
TCCGAAAAACATTAAATTGG+GGG + chr8_4:15636167-15636186 Msa1315980:intron 30.0%
!!! ATTCCGAGTTTTAAAATAGG+GGG + chr8_4:15636196-15636215 Msa1315980:intron 30.0%
AATTCCGATTCAGTCAAAAT+AGG + chr8_4:15636224-15636243 Msa1315980:intron 30.0%
ATTCCGATTCAGTCAAAATA+GGG + chr8_4:15636225-15636244 Msa1315980:intron 30.0%
AAAGGACAAAGAATCATTGA+AGG + chr8_4:15636590-15636609 Msa1315980:three_prime_UTR 30.0%
AAGGACAAAGAATCATTGAA+GGG + chr8_4:15636591-15636610 Msa1315980:three_prime_UTR 30.0%
TAGCTCACAAAATAGAGATA+GGG + chr8_4:15636706-15636725 Msa1315980:three_prime_UTR 30.0%
TAACCATATATATCAATCGC+AGG - chr8_4:15636879-15636898 None:intergenic 30.0%
AGGTGGAAACTTCTTAAATG+GGG - chr8_4:15632499-15632518 None:intergenic 35.0%
TTGTGGTAAGAAATGAAAGG+TGG - chr8_4:15632516-15632535 None:intergenic 35.0%
GGATTGTGGTAAGAAATGAA+AGG - chr8_4:15632519-15632538 None:intergenic 35.0%
GTTGATCTAAAAGAAGCAGA+GGG - chr8_4:15632540-15632559 None:intergenic 35.0%
TGTTGATCTAAAAGAAGCAG+AGG - chr8_4:15632541-15632560 None:intergenic 35.0%
ACTCTTAAGTCTCACAACAA+AGG - chr8_4:15632608-15632627 None:intergenic 35.0%
GAGACTTAAGAGTTGTTTGT+TGG + chr8_4:15632615-15632634 Msa1315980:five_prime_UTR 35.0%
! TTTGGGGTATTACTCATATG+GGG + chr8_4:15632715-15632734 Msa1315980:five_prime_UTR 35.0%
TCTTATTCCGCTTCTTCTTA+TGG + chr8_4:15632738-15632757 Msa1315980:five_prime_UTR 35.0%
ATCATTACCATACGGAATGT+TGG + chr8_4:15632795-15632814 Msa1315980:five_prime_UTR 35.0%
CATATACACCACTTTGATCA+TGG + chr8_4:15632863-15632882 Msa1315980:exon 35.0%
TTTGGTAAGAATGGAGAAAG+GGG - chr8_4:15633129-15633148 None:intergenic 35.0%
GTTTGGTAAGAATGGAGAAA+GGG - chr8_4:15633130-15633149 None:intergenic 35.0%
AGTTTGGTAAGAATGGAGAA+AGG - chr8_4:15633131-15633150 None:intergenic 35.0%
! ATGAGGATGAATTTGGAGTT+TGG - chr8_4:15633147-15633166 None:intergenic 35.0%
CATAGCTTACATTCCTAGAA+TGG + chr8_4:15633514-15633533 Msa1315980:CDS 35.0%
!! ACTTGTTGTGAATCCATTCT+AGG - chr8_4:15633530-15633549 None:intergenic 35.0%
ATGGATTCACAACAAGTTCA+AGG + chr8_4:15633533-15633552 Msa1315980:CDS 35.0%
CTGTGTAACACAAGAAATGT+TGG + chr8_4:15633577-15633596 Msa1315980:CDS 35.0%
!! TTGTTGCTTTCTGATTTCAC+TGG - chr8_4:15633614-15633633 None:intergenic 35.0%
TCATGTTCCAAATCTCAACA+AGG + chr8_4:15633710-15633729 Msa1315980:CDS 35.0%
TGTTGTTCCTTGTTGAGATT+TGG - chr8_4:15633720-15633739 None:intergenic 35.0%
AATCTCAACAAGGAACAACA+AGG + chr8_4:15633720-15633739 Msa1315980:CDS 35.0%
ATCTCAACAAGGAACAACAA+GGG + chr8_4:15633721-15633740 Msa1315980:CDS 35.0%
TAAGAGACCTAAGAACACTA+AGG - chr8_4:15633859-15633878 None:intergenic 35.0%
TGCCATCTTCATATGTTCAA+AGG + chr8_4:15633879-15633898 Msa1315980:CDS 35.0%
GCCATCTTCATATGTTCAAA+GGG + chr8_4:15633880-15633899 Msa1315980:CDS 35.0%
ACCCTTTGAACATATGAAGA+TGG - chr8_4:15633884-15633903 None:intergenic 35.0%
! TTTGTATACAAGGGCATGTT+TGG + chr8_4:15634013-15634032 Msa1315980:intron 35.0%
ATCACCTTGTGATGAAAATG+AGG + chr8_4:15634455-15634474 Msa1315980:CDS 35.0%
ATTGAGTGCAAAAAAAAGGC+TGG + chr8_4:15634549-15634568 Msa1315980:CDS 35.0%
! AAAGGCTGGTCAATTGATAA+AGG + chr8_4:15634563-15634582 Msa1315980:CDS 35.0%
TAAATGTGGTCAACTCACTA+TGG + chr8_4:15634739-15634758 Msa1315980:intron 35.0%
GATAAACAATGTTGGAACCA+AGG - chr8_4:15634820-15634839 None:intergenic 35.0%
AGCTAATGCTATGAGTATGA+GGG + chr8_4:15634949-15634968 Msa1315980:intron 35.0%
! ATTCTAGTGTTGAGTTTGTG+AGG + chr8_4:15635306-15635325 Msa1315980:intron 35.0%
TTCCGATTCAGTCAAAATAG+GGG - chr8_4:15636226-15636245 None:intergenic 35.0%
!!! TTCCGAGTTTTAAAATAGGG+GGG - chr8_4:15636197-15636216 None:intergenic 35.0%
CGAAAAACATTAAATTGGGG+GGG - chr8_4:15636169-15636188 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG - chr8_4:15636168-15636187 None:intergenic 35.0%
! CCCCCCAATTTAATGTTTTT+CGG + chr8_4:15635566-15635585 Msa1315980:intron 35.0%
! AATAAGATAATGTGGTGGAG+GGG - chr8_4:15635659-15635678 None:intergenic 35.0%
!!! TCTGAGTTTTAAAATAGGGG+GGG + chr8_4:15636138-15636157 Msa1315980:intron 35.0%
! CCCCCCAATTTAATGTTTTT+CGG - chr8_4:15635566-15635585 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG + chr8_4:15636168-15636187 Msa1315980:intron 35.0%
CGAAAAACATTAAATTGGGG+GGG + chr8_4:15636169-15636188 Msa1315980:intron 35.0%
!!! TTCCGAGTTTTAAAATAGGG+GGG + chr8_4:15636197-15636216 Msa1315980:intron 35.0%
TTCCGATTCAGTCAAAATAG+GGG + chr8_4:15636226-15636245 Msa1315980:intron 35.0%
ATTGAAGAAGACTGTAAGCT+AGG + chr8_4:15636446-15636465 Msa1315980:CDS 35.0%
TAGCTATAAGCCTAAAACCT+TGG + chr8_4:15636542-15636561 Msa1315980:three_prime_UTR 35.0%
AGCTATAAGCCTAAAACCTT+GGG + chr8_4:15636543-15636562 Msa1315980:three_prime_UTR 35.0%
ACAAAGAATCATTGAAGGGA+TGG + chr8_4:15636595-15636614 Msa1315980:three_prime_UTR 35.0%
GTAGCTCACAAAATAGAGAT+AGG + chr8_4:15636705-15636724 Msa1315980:three_prime_UTR 35.0%
TCACCTGCGATTGATATATA+TGG + chr8_4:15636873-15636892 Msa1315980:three_prime_UTR 35.0%
TGTAAGGTCCCAAGCATTAT+TGG - chr8_4:15632379-15632398 None:intergenic 40.0%
! GAAGGGTTGTCTGATTTGTA+AGG - chr8_4:15632395-15632414 None:intergenic 40.0%
TAAGAGAGAGAGAGAGAGAA+GGG - chr8_4:15632412-15632431 None:intergenic 40.0%
TAAAAGAAGCAGAGGGATTG+TGG - chr8_4:15632533-15632552 None:intergenic 40.0%
ATGTAAGCTATGTCTTCCCA+TGG - chr8_4:15633506-15633525 None:intergenic 40.0%
CACTAAGGTGGTCATTCATT+TGG - chr8_4:15633844-15633863 None:intergenic 40.0%
ATGACCACCTTAGTGTTCTT+AGG + chr8_4:15633849-15633868 Msa1315980:CDS 40.0%
GGTGACCAAGCATCAATAAT+TGG + chr8_4:15634303-15634322 Msa1315980:CDS 40.0%
GACCAAGCATCAATAATTGG+AGG + chr8_4:15634306-15634325 Msa1315980:CDS 40.0%
CTCCTCCAATTATTGATGCT+TGG - chr8_4:15634311-15634330 None:intergenic 40.0%
TCATCATCACCACCTAGTTA+TGG + chr8_4:15634423-15634442 Msa1315980:CDS 40.0%
ACTCTACTCCTTCAATCTCA+AGG + chr8_4:15634656-15634675 Msa1315980:CDS 40.0%
! CTTGCTATCTAAGCAAAACC+TGG + chr8_4:15634791-15634810 Msa1315980:intron 40.0%
AAGAGTTGAGTTTGTCCACA+AGG + chr8_4:15634916-15634935 Msa1315980:intron 40.0%
TTTGTCCACAAGGTATAAGC+TGG + chr8_4:15634926-15634945 Msa1315980:intron 40.0%
GAGCTAATGCTATGAGTATG+AGG + chr8_4:15634948-15634967 Msa1315980:intron 40.0%
! GACAACCCATAGATTAGCTA+AGG + chr8_4:15635343-15635362 Msa1315980:intron 40.0%
! AACCCATAGATTAGCTAAGG+TGG + chr8_4:15635346-15635365 Msa1315980:intron 40.0%
GACCACCTTAGCTAATCTAT+GGG - chr8_4:15635351-15635370 None:intergenic 40.0%
TGACCACCTTAGCTAATCTA+TGG - chr8_4:15635352-15635371 None:intergenic 40.0%
TCCGATTCAGTCAAAATAGG+GGG - chr8_4:15636227-15636246 None:intergenic 40.0%
!!! ACCCCCCCTATTTTAAAACT+CGG + chr8_4:15635535-15635554 Msa1315980:intron 40.0%
!!! TCCGAGTTTTAAAATAGGGG+GGG - chr8_4:15636198-15636217 None:intergenic 40.0%
! ATAAGATAATGTGGTGGAGG+GGG - chr8_4:15635658-15635677 None:intergenic 40.0%
!!! TCCGAGTTTTAAAATAGGGG+GGG + chr8_4:15636198-15636217 Msa1315980:intron 40.0%
!!! ACCCCCCCTATTTTAAAACT+CGG - chr8_4:15635535-15635554 None:intergenic 40.0%
TCCGATTCAGTCAAAATAGG+GGG + chr8_4:15636227-15636246 Msa1315980:intron 40.0%
GCTATAAGCCTAAAACCTTG+GGG + chr8_4:15636544-15636563 Msa1315980:three_prime_UTR 40.0%
CTATAAGCCTAAAACCTTGG+GGG + chr8_4:15636545-15636564 Msa1315980:three_prime_UTR 40.0%
TATAAGCCTAAAACCTTGGG+GGG + chr8_4:15636546-15636565 Msa1315980:three_prime_UTR 40.0%
GGGTTGTTGCAGAAGAATAA+AGG + chr8_4:15636572-15636591 Msa1315980:three_prime_UTR 40.0%
AAGAATCATTGAAGGGATGG+TGG + chr8_4:15636598-15636617 Msa1315980:three_prime_UTR 40.0%
CTCATTGTGACTTGAGTTTC+AGG + chr8_4:15636914-15636933 Msa1315980:three_prime_UTR 40.0%
AAGGTCCCAAGCATTATTGG+CGG - chr8_4:15632376-15632395 None:intergenic 45.0%
GTAAGAGAGAGAGAGAGAGA+AGG - chr8_4:15632413-15632432 None:intergenic 45.0%
GAGATATGCTAGGCTAAGCT+AGG - chr8_4:15632470-15632489 None:intergenic 45.0%
ACACCACTTTGATCATGGAG+AGG + chr8_4:15632868-15632887 Msa1315980:exon 45.0%
AAGCCTCTCCATGATCAAAG+TGG - chr8_4:15632874-15632893 None:intergenic 45.0%
TTGATCATGGAGAGGCTTCA+AGG + chr8_4:15632876-15632895 Msa1315980:exon 45.0%
ACAAGTTCAAGGCGCAACAT+TGG + chr8_4:15633544-15633563 Msa1315980:CDS 45.0%
GAGACCTAAGAACACTAAGG+TGG - chr8_4:15633856-15633875 None:intergenic 45.0%
! GGTGGTGATGATGATGATGA+GGG - chr8_4:15634417-15634436 None:intergenic 45.0%
! AGGTGGTGATGATGATGATG+AGG - chr8_4:15634418-15634437 None:intergenic 45.0%
TAAGCAAAACCTGGCTTCCT+TGG + chr8_4:15634800-15634819 Msa1315980:intron 45.0%
TAGCTCCAGCTTATACCTTG+TGG - chr8_4:15634934-15634953 None:intergenic 45.0%
CGATTCAGTCAAAATAGGGG+GGG - chr8_4:15636229-15636248 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG - chr8_4:15636228-15636247 None:intergenic 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG + chr8_4:15635506-15635525 Msa1315980:intron 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG - chr8_4:15635506-15635525 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG + chr8_4:15636228-15636247 Msa1315980:intron 45.0%
CGATTCAGTCAAAATAGGGG+GGG + chr8_4:15636229-15636248 Msa1315980:intron 45.0%
!!! AATTTTTATTTTTTTAAATG+TGG + chr8_4:15634725-15634744 Msa1315980:intron 5.0%
!!! AAATTTACTAATTTTAAATA+TGG - chr8_4:15634882-15634901 None:intergenic 5.0%
!! TTAAACTAAAATAATTTAAT+CGG + chr8_4:15635179-15635198 Msa1315980:intron 5.0%
!!! AAAAACTTTTTATAATTTTT+TGG + chr8_4:15635466-15635485 Msa1315980:intron 5.0%
!!! TAAATAACTTTTTAAAAAAA+TGG + chr8_4:15635727-15635746 Msa1315980:intron 5.0%
ACACCCCGCCAATAATGCTT+GGG + chr8_4:15632368-15632387 Msa1315980:five_prime_UTR 50.0%
AGGTCCCAAGCATTATTGGC+GGG - chr8_4:15632375-15632394 None:intergenic 50.0%
AGGTGTGTGTGAGAGAGAGT+TGG - chr8_4:15632435-15632454 None:intergenic 50.0%
GGGGTTGCAAGAGATATGCT+AGG - chr8_4:15632480-15632499 None:intergenic 50.0%
AGGGTGACCAACATTCCGTA+TGG - chr8_4:15632805-15632824 None:intergenic 50.0%
ATGTTGGAACCAAGGAAGCC+AGG - chr8_4:15634812-15634831 None:intergenic 50.0%
CCTAAAACCTTGGGGGGAAT+GGG + chr8_4:15636552-15636571 Msa1315980:three_prime_UTR 50.0%
! GAAGGGATGGTGGTAAAGTG+TGG + chr8_4:15636608-15636627 Msa1315980:three_prime_UTR 50.0%
! GATGGTGGTAAAGTGTGGCT+GGG + chr8_4:15636613-15636632 Msa1315980:three_prime_UTR 50.0%
ATGGTGGTAAAGTGTGGCTG+GGG + chr8_4:15636614-15636633 Msa1315980:three_prime_UTR 50.0%
AGCATTATTGGCGGGGTGTG+TGG - chr8_4:15632367-15632386 None:intergenic 55.0%
CACACCCCGCCAATAATGCT+TGG + chr8_4:15632367-15632386 Msa1315980:five_prime_UTR 55.0%
GGTCCCAAGCATTATTGGCG+GGG - chr8_4:15632374-15632393 None:intergenic 55.0%
GCCTAAAACCTTGGGGGGAA+TGG + chr8_4:15636551-15636570 Msa1315980:three_prime_UTR 55.0%
! CCCATTCCCCCCAAGGTTTT+AGG - chr8_4:15636555-15636574 None:intergenic 55.0%
! GGATGGTGGTAAAGTGTGGC+TGG + chr8_4:15636612-15636631 Msa1315980:three_prime_UTR 55.0%
GTAAAGTGTGGCTGGGGTGA+CGG + chr8_4:15636620-15636639 Msa1315980:three_prime_UTR 55.0%
TAAAGTGTGGCTGGGGTGAC+GGG + chr8_4:15636621-15636640 Msa1315980:three_prime_UTR 55.0%
GCAACAACCCATTCCCCCCA+AGG - chr8_4:15636562-15636581 None:intergenic 60.0%
AAAGTGTGGCTGGGGTGACG+GGG + chr8_4:15636622-15636641 Msa1315980:three_prime_UTR 60.0%
!! CTGGGGTGACGGGGAACATA+GGG + chr8_4:15636631-15636650 Msa1315980:three_prime_UTR 60.0%
!! GCTGGGGTGACGGGGAACAT+AGG + chr8_4:15636630-15636649 Msa1315980:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 15632350 15637035 15632350 ID=Msa1315980;Name=Msa1315980
chr8_4 mRNA 15632350 15637035 15632350 ID=Msa1315980-mRNA-1;Parent=Msa1315980;Name=Msa1315980-mRNA-1;_AED=0.14;_eAED=0.14;_QI=532|1|1|1|1|1|4|503|365
chr8_4 exon 15632350 15632914 15632350 ID=Msa1315980-mRNA-1:exon:5996;Parent=Msa1315980-mRNA-1
chr8_4 exon 15633299 15633901 15633299 ID=Msa1315980-mRNA-1:exon:5997;Parent=Msa1315980-mRNA-1
chr8_4 exon 15634303 15634677 15634303 ID=Msa1315980-mRNA-1:exon:5998;Parent=Msa1315980-mRNA-1
chr8_4 exon 15636446 15637035 15636446 ID=Msa1315980-mRNA-1:exon:5999;Parent=Msa1315980-mRNA-1
chr8_4 five_prime_UTR 15632350 15632881 15632350 ID=Msa1315980-mRNA-1:five_prime_utr;Parent=Msa1315980-mRNA-1
chr8_4 CDS 15632882 15632914 15632882 ID=Msa1315980-mRNA-1:cds;Parent=Msa1315980-mRNA-1
chr8_4 CDS 15633299 15633901 15633299 ID=Msa1315980-mRNA-1:cds;Parent=Msa1315980-mRNA-1
chr8_4 CDS 15634303 15634677 15634303 ID=Msa1315980-mRNA-1:cds;Parent=Msa1315980-mRNA-1
chr8_4 CDS 15636446 15636532 15636446 ID=Msa1315980-mRNA-1:cds;Parent=Msa1315980-mRNA-1
chr8_4 three_prime_UTR 15636533 15637035 15636533 ID=Msa1315980-mRNA-1:three_prime_utr;Parent=Msa1315980-mRNA-1
Gene Sequence

>Msa1315980

ATGGAGAGGCTTCAAGGACCCATCAATTCTTGTTTCTTTGGTGAAGTGAATTGTTTAGACCAAACATTACTTGATGAACAAAGTTTGAGATTTGAAGAGGAAGAACAATTTCTCATATCAAGTTTAGAAGATAACATGCCATTTCTTCAAATGCTTCAAAGTGTTGATTCTCCACAGTTTTTTCCTTTGAAAGAACAAAATTTTCAAACACTTTTAAGGCTTCAACATATGAAAAAACCATGGGAAGACATAGCTTACATTCCTAGAATGGATTCACAACAAGTTCAAGGCGCAACATTGGAATTTGAAAGCTGTGTAACACAAGAAATGTTGGAGATGCAATCACCAGTGAAATCAGAAAGCAACAAAGTTTCACTTTCAACTTCATGCATTGAGAAATTAAGCTATGAATGTAACCAACAAGAAGAAACAAAAACAGCACAATCATGTTCCAAATCTCAACAAGGAACAACAAGGGAAAAGAGAAAGAGAAAAAGAACAAGACCAGTTAAGAATAAGGAAGATGTTGAGAATCAAAGAATGACACATATTGCTGTTGAACGTAATAGGAGACGCCAAATGAATGACCACCTTAGTGTTCTTAGGTCTCTTATGCCATCTTCATATGTTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATTGATTTTGTGAAAGAGTTGGAACAATTGCTTGAATCTCTTGAAGCACAAAAAAGGGTAAAAAAGAATGAAGATTTTGGGCCCTCATCATCATCATCACCACCTAGTTATGGAATGAAATTATCACCTTGTGATGAAAATGAGGTAAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCAAAAAAAAGGCTGGTCAATTGATAAAGGTTATTGTTGCTTTGGAAAATCTTAGGCTAACTATTCTTCACCTAAACATCACATCTTATGAGTCTTCTGTACTCTACTCCTTCAATCTCAAGATTGAAGAAGACTGTAAGCTAGGCACAGCAAATGACATAGCAGAAGCAGTTCATCAAATATTCAGCTACATCAATAATGGTAGCTAA

Protein sequence

>Msa1315980

MERLQGPINSCFFGEVNCLDQTLLDEQSLRFEEEEQFLISSLEDNMPFLQMLQSVDSPQFFPLKEQNFQTLLRLQHMKKPWEDIAYIPRMDSQQVQGATLEFESCVTQEMLEMQSPVKSESNKVSLSTSCIEKLSYECNQQEETKTAQSCSKSQQGTTREKRKRKRTRPVKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYVQRGDQASIIGGAIDFVKELEQLLESLEAQKRVKKNEDFGPSSSSSPPSYGMKLSPCDENEVKAENKSEAADIKVTLIQTHVNLKIECKKKAGQLIKVIVALENLRLTILHLNITSYESSVLYSFNLKIEEDCKLGTANDIAEAVHQIFSYINNGS*