Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169570 | XP_013468641.1 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1 | 126 | 4.32e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169570 | sp|Q8L8Q8|Y5486_ARATH | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.45e-73 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169570 | A0A072VML2 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1 | 126 | 2.06e-86 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004360 | Msa0169570 | 0.802191 | 6.306989e-49 | -8.615850e-47 |
| Msa0005050 | Msa0169570 | 0.833741 | 4.480916e-56 | -8.615850e-47 |
| Msa0024680 | Msa0169570 | 0.821864 | 3.219184e-53 | -8.615850e-47 |
| Msa0027540 | Msa0169570 | 0.811322 | 7.420749e-51 | -8.615850e-47 |
| Msa0030310 | Msa0169570 | 0.827591 | 1.437656e-54 | -8.615850e-47 |
| Msa0030380 | Msa0169570 | 0.813893 | 2.032745e-51 | -8.615850e-47 |
| Msa0044020 | Msa0169570 | 0.808530 | 2.960881e-50 | -8.615850e-47 |
| Msa0053110 | Msa0169570 | 0.850490 | 1.641916e-60 | -8.615850e-47 |
| Msa0072810 | Msa0169570 | 0.818065 | 2.381048e-52 | -8.615850e-47 |
| Msa0073670 | Msa0169570 | 0.832555 | 8.843724e-56 | -8.615850e-47 |
| Msa0075310 | Msa0169570 | 0.809412 | 1.916793e-50 | -8.615850e-47 |
| Msa0095380 | Msa0169570 | 0.805828 | 1.105632e-49 | -8.615850e-47 |
| Msa0098440 | Msa0169570 | 0.817071 | 3.988124e-52 | -8.615850e-47 |
| Msa0103000 | Msa0169570 | 0.801126 | 1.043215e-48 | -8.615850e-47 |
| Msa0110970 | Msa0169570 | 0.802133 | 6.481808e-49 | -8.615850e-47 |
| Msa0125580 | Msa0169570 | 0.936047 | 3.237829e-97 | -8.615850e-47 |
| Msa0141830 | Msa0169570 | 0.801725 | 7.861948e-49 | -8.615850e-47 |
| Msa0143080 | Msa0169570 | 0.809476 | 1.857236e-50 | -8.615850e-47 |
| Msa0143430 | Msa0169570 | 0.801121 | 1.045676e-48 | -8.615850e-47 |
| Msa0168100 | Msa0169570 | 0.803023 | 4.248943e-49 | -8.615850e-47 |
| Msa0169570 | Msa0172350 | 0.810884 | 9.229826e-51 | -8.615850e-47 |
| Msa0169570 | Msa0173740 | 0.815141 | 1.076141e-51 | -8.615850e-47 |
| Msa0169570 | Msa0173820 | 0.817640 | 2.969299e-52 | -8.615850e-47 |
| Msa0169570 | Msa0173830 | 0.809030 | 2.314160e-50 | -8.615850e-47 |
| Msa0169570 | Msa0182930 | 0.803167 | 3.967670e-49 | -8.615850e-47 |
| Msa0169570 | Msa0186890 | 0.801337 | 9.441128e-49 | -8.615850e-47 |
| Msa0169570 | Msa0194540 | 0.800207 | 1.605939e-48 | -8.615850e-47 |
| Msa0169570 | Msa0194970 | 0.803131 | 4.035308e-49 | -8.615850e-47 |
| Msa0169570 | Msa0207000 | 0.815525 | 8.841230e-52 | -8.615850e-47 |
| Msa0169570 | Msa0236980 | 0.807958 | 3.919818e-50 | -8.615850e-47 |
| Msa0169570 | Msa0242230 | 0.814526 | 1.472877e-51 | -8.615850e-47 |
| Msa0169570 | Msa0244270 | 0.801832 | 7.474976e-49 | -8.615850e-47 |
| Msa0169570 | Msa0246690 | 0.805783 | 1.129927e-49 | -8.615850e-47 |
| Msa0169570 | Msa0260240 | 0.801904 | 7.224438e-49 | -8.615850e-47 |
| Msa0169570 | Msa0260280 | 0.803474 | 3.427086e-49 | -8.615850e-47 |
| Msa0169570 | Msa0267760 | 0.816899 | 4.358187e-52 | -8.615850e-47 |
| Msa0169570 | Msa0268130 | 0.800871 | 1.176064e-48 | -8.615850e-47 |
| Msa0169570 | Msa0280900 | 0.803480 | 3.416799e-49 | -8.615850e-47 |
| Msa0169570 | Msa0316850 | 0.801247 | 9.852724e-49 | -8.615850e-47 |
| Msa0169570 | Msa0319200 | 0.808273 | 3.358782e-50 | -8.615850e-47 |
| Msa0169570 | Msa0335270 | 0.800462 | 1.424967e-48 | -8.615850e-47 |
| Msa0169570 | Msa0355270 | 0.800934 | 1.141572e-48 | -8.615850e-47 |
| Msa0169570 | Msa0425940 | 0.819651 | 1.038714e-52 | -8.615850e-47 |
| Msa0169570 | Msa0426160 | 0.818068 | 2.376605e-52 | -8.615850e-47 |
| Msa0169570 | Msa0436460 | 0.804958 | 1.682444e-49 | -8.615850e-47 |
| Msa0169570 | Msa0472380 | 0.807689 | 4.471928e-50 | -8.615850e-47 |
| Msa0169570 | Msa0510440 | 0.803682 | 3.103213e-49 | -8.615850e-47 |
| Msa0169570 | Msa0526710 | 0.806098 | 9.702584e-50 | -8.615850e-47 |
| Msa0169570 | Msa0535030 | 0.813743 | 2.193572e-51 | -8.615850e-47 |
| Msa0169570 | Msa0535060 | 0.811105 | 8.266411e-51 | -8.615850e-47 |
| Msa0169570 | Msa0546840 | 0.801192 | 1.010905e-48 | -8.615850e-47 |
| Msa0169570 | Msa0552810 | 0.816651 | 4.955095e-52 | -8.615850e-47 |
| Msa0169570 | Msa0590680 | 0.811435 | 7.010580e-51 | -8.615850e-47 |
| Msa0169570 | Msa0591060 | 0.803019 | 4.256533e-49 | -8.615850e-47 |
| Msa0169570 | Msa0607200 | 0.808901 | 2.466018e-50 | -8.615850e-47 |
| Msa0169570 | Msa0622960 | 0.809552 | 1.788786e-50 | -8.615850e-47 |
| Msa0169570 | Msa0642650 | 0.809777 | 1.600395e-50 | -8.615850e-47 |
| Msa0169570 | Msa0647380 | 0.803109 | 4.078886e-49 | -8.615850e-47 |
| Msa0169570 | Msa0669850 | 0.822354 | 2.477567e-53 | -8.615850e-47 |
| Msa0169570 | Msa0672110 | 0.810869 | 9.299412e-51 | -8.615850e-47 |
| Msa0169570 | Msa0677290 | 0.826797 | 2.227669e-54 | -8.615850e-47 |
| Msa0169570 | Msa0678860 | 0.913132 | 8.766219e-84 | -8.615850e-47 |
| Msa0169570 | Msa0684510 | 0.800607 | 1.331358e-48 | -8.615850e-47 |
| Msa0169570 | Msa0687630 | 0.814185 | 1.752486e-51 | -8.615850e-47 |
| Msa0169570 | Msa0688870 | 0.812259 | 4.639087e-51 | -8.615850e-47 |
| Msa0169570 | Msa0692080 | 0.822988 | 1.763679e-53 | -8.615850e-47 |
| Msa0169570 | Msa0693570 | 0.808757 | 2.647540e-50 | -8.615850e-47 |
| Msa0169570 | Msa0696620 | 0.804187 | 2.436873e-49 | -8.615850e-47 |
| Msa0169570 | Msa0713820 | 0.811483 | 6.845985e-51 | -8.615850e-47 |
| Msa0169570 | Msa0740040 | 0.832034 | 1.190228e-55 | -8.615850e-47 |
| Msa0169570 | Msa0747780 | 0.843577 | 1.286403e-58 | -8.615850e-47 |
| Msa0169570 | Msa0755340 | 0.808941 | 2.418107e-50 | -8.615850e-47 |
| Msa0169570 | Msa0776220 | 0.812403 | 4.315884e-51 | -8.615850e-47 |
| Msa0169570 | Msa0810020 | 0.822118 | 2.810944e-53 | -8.615850e-47 |
| Msa0169570 | Msa0813720 | 0.815973 | 7.026299e-52 | -8.615850e-47 |
| Msa0169570 | Msa0822990 | 0.812370 | 4.388113e-51 | -8.615850e-47 |
| Msa0169570 | Msa0824640 | 0.800377 | 1.483360e-48 | -8.615850e-47 |
| Msa0169570 | Msa0824910 | 0.802207 | 6.259223e-49 | -8.615850e-47 |
| Msa0169570 | Msa0853320 | 0.801031 | 1.090483e-48 | -8.615850e-47 |
| Msa0169570 | Msa0862100 | 0.810334 | 1.213812e-50 | -8.615850e-47 |
| Msa0169570 | Msa0863970 | 0.811528 | 6.693370e-51 | -8.615850e-47 |
| Msa0169570 | Msa0864010 | 0.800459 | 1.427270e-48 | -8.615850e-47 |
| Msa0169570 | Msa0872310 | 0.848176 | 7.241457e-60 | -8.615850e-47 |
| Msa0169570 | Msa0878980 | -0.809558 | 1.783221e-50 | -8.615850e-47 |
| Msa0169570 | Msa0900630 | 0.819367 | 1.205677e-52 | -8.615850e-47 |
| Msa0169570 | Msa0905550 | 0.853881 | 1.782254e-61 | -8.615850e-47 |
| Msa0169570 | Msa0925160 | 0.814245 | 1.699328e-51 | -8.615850e-47 |
| Msa0169570 | Msa0926460 | 0.801685 | 8.013720e-49 | -8.615850e-47 |
| Msa0169570 | Msa0937550 | 0.872599 | 2.809850e-67 | -8.615850e-47 |
| Msa0169570 | Msa0951710 | 0.805977 | 1.028628e-49 | -8.615850e-47 |
| Msa0169570 | Msa0965860 | 0.815998 | 6.936650e-52 | -8.615850e-47 |
| Msa0169570 | Msa0974750 | 0.824079 | 9.799880e-54 | -8.615850e-47 |
| Msa0169570 | Msa0979550 | 0.807234 | 5.584679e-50 | -8.615850e-47 |
| Msa0169570 | Msa1000690 | 0.809012 | 2.334370e-50 | -8.615850e-47 |
| Msa0169570 | Msa1012370 | 0.804101 | 2.538967e-49 | -8.615850e-47 |
| Msa0169570 | Msa1018790 | 0.814869 | 1.236608e-51 | -8.615850e-47 |
| Msa0169570 | Msa1041530 | 0.817638 | 2.971832e-52 | -8.615850e-47 |
| Msa0169570 | Msa1044340 | 0.823328 | 1.469747e-53 | -8.615850e-47 |
| Msa0169570 | Msa1054240 | 0.812006 | 5.267133e-51 | -8.615850e-47 |
| Msa0169570 | Msa1082700 | 0.801695 | 7.975055e-49 | -8.615850e-47 |
| Msa0169570 | Msa1106810 | 0.809792 | 1.587801e-50 | -8.615850e-47 |
| Msa0169570 | Msa1126510 | 0.818662 | 1.743469e-52 | -8.615850e-47 |
| Msa0169570 | Msa1127140 | 0.809047 | 2.295065e-50 | -8.615850e-47 |
| Msa0169570 | Msa1139810 | 0.814982 | 1.167258e-51 | -8.615850e-47 |
| Msa0169570 | Msa1150970 | 0.812654 | 3.802936e-51 | -8.615850e-47 |
| Msa0169570 | Msa1166400 | 0.805596 | 1.236575e-49 | -8.615850e-47 |
| Msa0169570 | Msa1166860 | 0.803086 | 4.122159e-49 | -8.615850e-47 |
| Msa0169570 | Msa1174010 | 0.803258 | 3.797930e-49 | -8.615850e-47 |
| Msa0169570 | Msa1183660 | 0.800678 | 1.287375e-48 | -8.615850e-47 |
| Msa0169570 | Msa1187840 | 0.803423 | 3.510745e-49 | -8.615850e-47 |
| Msa0169570 | Msa1210770 | 0.807971 | 3.894985e-50 | -8.615850e-47 |
| Msa0169570 | Msa1211090 | 0.826942 | 2.055960e-54 | -8.615850e-47 |
| Msa0169570 | Msa1229700 | 0.806122 | 9.587137e-50 | -8.615850e-47 |
| Msa0169570 | Msa1237030 | 0.803182 | 3.939119e-49 | -8.615850e-47 |
| Msa0169570 | Msa1249870 | 0.863689 | 2.080047e-64 | -8.615850e-47 |
| Msa0169570 | Msa1254610 | 0.813244 | 2.823141e-51 | -8.615850e-47 |
| Msa0169570 | Msa1272330 | 0.813313 | 2.727082e-51 | -8.615850e-47 |
| Msa0169570 | Msa1283170 | 0.806225 | 9.122070e-50 | -8.615850e-47 |
| Msa0169570 | Msa1307950 | 0.800953 | 1.131470e-48 | -8.615850e-47 |
| Msa0169570 | Msa1310290 | 0.803375 | 3.592500e-49 | -8.615850e-47 |
| Msa0169570 | Msa1316780 | 0.822321 | 2.521357e-53 | -8.615850e-47 |
| Msa0169570 | Msa1316830 | 0.834707 | 2.564816e-56 | -8.615850e-47 |
| Msa0169570 | Msa1365150 | 0.804516 | 2.081147e-49 | -8.615850e-47 |
| Msa0169570 | Msa1367880 | 0.804665 | 1.937076e-49 | -8.615850e-47 |
| Msa0169570 | Msa1379990 | 0.805226 | 1.478469e-49 | -8.615850e-47 |
| Msa0169570 | Msa1382310 | 0.805577 | 1.247992e-49 | -8.615850e-47 |
| Msa0169570 | Msa1382720 | 0.814325 | 1.632181e-51 | -8.615850e-47 |
| Msa0169570 | Msa1390310 | 0.804897 | 1.732431e-49 | -8.615850e-47 |
| Msa0169570 | Msa1397050 | 0.800696 | 1.276981e-48 | -8.615850e-47 |
| Msa0169570 | Msa1404190 | 0.821452 | 4.007940e-53 | -8.615850e-47 |
| Msa0169570 | Msa1420060 | 0.817314 | 3.516705e-52 | -8.615850e-47 |
| Msa0169570 | Msa1449880 | 0.826244 | 3.017679e-54 | -8.615850e-47 |
| Msa0169570 | Msa1466990 | 0.800379 | 1.481905e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169570 | MtrunA17_Chr1g0186311 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1 | 126 | 3.97e-90 | 256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169570 | AT5G64816.2 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
| Msa0169570 | AT5G64816.4 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
| Msa0169570 | AT5G64816.1 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
| Msa0169570 | AT5G64816.3 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 2.49e-74 | 217 |
Find 33 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATATTTGGTGGTCACTTT+TGG | 0.138181 | 1_4:-52759092 | Msa0169570:CDS |
| TTCAAAGAGGATGTTGAAAA+AGG | 0.272946 | 1_4:-52758933 | Msa0169570:CDS |
| ACCAACATCAAGTACCTAAT+TGG | 0.274343 | 1_4:-52758805 | Msa0169570:CDS |
| GATACTTGTGTTACTGTTTG+TGG | 0.347747 | 1_4:-52758881 | Msa0169570:CDS |
| GCAGTCCCTGTCGTTGTTGC+AGG | 0.348680 | 1_4:-52759064 | Msa0169570:CDS |
| TATCAGAGATGGGAGATATT+TGG | 0.353189 | 1_4:-52759105 | Msa0169570:exon |
| ATTGGAATGACACATGTCTT+AGG | 0.381625 | 1_4:-52758787 | Msa0169570:CDS |
| AGACATGTGTCATTCCAATT+AGG | 0.386451 | 1_4:+52758791 | None:intergenic |
| GTAACACAAGTATCAGGAAT+TGG | 0.406394 | 1_4:+52758890 | None:intergenic |
| CAAACAGTAACACAAGTATC+AGG | 0.430522 | 1_4:+52758884 | None:intergenic |
| TTCTCTTTCTCCGCCACCGC+CGG | 0.441914 | 1_4:-52760122 | Msa0169570:intron |
| GCTTGTCCTGCAACAACGAC+AGG | 0.451940 | 1_4:+52759058 | None:intergenic |
| TCCAATTAGGTACTTGATGT+TGG | 0.474351 | 1_4:+52758804 | None:intergenic |
| GCTATAGAAATACGAAGGTA+AGG | 0.475057 | 1_4:-52760199 | None:intergenic |
| AAGCATTTAGAGTTAAGAAA+AGG | 0.483524 | 1_4:-52759039 | Msa0169570:CDS |
| TGCTGAAGCTTGTGCTCGTA+CGG | 0.484272 | 1_4:-52758837 | Msa0169570:CDS |
| AGCAAAGGTTGAAGAGTGCA+AGG | 0.518677 | 1_4:-52759006 | Msa0169570:CDS |
| GTGAAACTAACCGGCGGTGG+CGG | 0.523447 | 1_4:+52760112 | None:intergenic |
| AAGTTGTGTAGTATCAGAGA+TGG | 0.527208 | 1_4:-52759116 | Msa0169570:intron |
| AAAGGAATGCAGAGGAGCAA+AGG | 0.541153 | 1_4:-52759021 | Msa0169570:CDS |
| AGAGTGCAAGGGGAAGAGAA+AGG | 0.552353 | 1_4:-52758994 | Msa0169570:CDS |
| CAGAGATGGGAGATATTTGG+TGG | 0.589138 | 1_4:-52759102 | Msa0169570:exon |
| GGCGGTGGCGGAGAAAGAGA+AGG | 0.591461 | 1_4:+52760124 | None:intergenic |
| CTATAGAAATACGAAGGTAA+GGG | 0.604283 | 1_4:-52760198 | None:intergenic |
| CAAAGGTTGAAGAGTGCAAG+GGG | 0.608201 | 1_4:-52759004 | Msa0169570:CDS |
| GCAAAGGTTGAAGAGTGCAA+GGG | 0.610878 | 1_4:-52759005 | Msa0169570:CDS |
| AGTTGTGTAGTATCAGAGAT+GGG | 0.617867 | 1_4:-52759115 | Msa0169570:intron |
| AGTTAAGAAAAGGAATGCAG+AGG | 0.619043 | 1_4:-52759029 | Msa0169570:CDS |
| CTTGTCCTGCAACAACGACA+GGG | 0.623317 | 1_4:+52759059 | None:intergenic |
| GAAGTGAAACTAACCGGCGG+TGG | 0.626939 | 1_4:+52760109 | None:intergenic |
| GGAATGACACATGTCTTAGG+AGG | 0.635618 | 1_4:-52758784 | Msa0169570:CDS |
| AAAGGGTCTGCACTTCAAAG+AGG | 0.655293 | 1_4:-52758946 | Msa0169570:CDS |
| GGTGGCGGAGAAAGAGAAGG+CGG | 0.735009 | 1_4:+52760127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAATTAAGAGAAAAATT+AGG | + | chr1_4:52758924-52758943 | None:intergenic | 15.0% |
| !! | ATATATAGTTTAAGGAATAA+AGG | - | chr1_4:52759235-52759254 | Msa0169570:intron | 15.0% |
| !! | TATATAGTTTAAGGAATAAA+GGG | - | chr1_4:52759236-52759255 | Msa0169570:intron | 15.0% |
| !! | ATATTTAATGTCAATATTGA+GGG | - | chr1_4:52759448-52759467 | Msa0169570:intron | 15.0% |
| !! | TTAATGATAAGAAACAATTT+GGG | + | chr1_4:52759575-52759594 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAACAATT+TGG | + | chr1_4:52759576-52759595 | None:intergenic | 15.0% |
| !! | TTTCTTATCATTAATTAAAG+TGG | - | chr1_4:52759581-52759600 | Msa0169570:intron | 15.0% |
| !! | TGAAAATTAAGAGAAAAATT+AGG | + | chr1_4:52758924-52758943 | None:intergenic | 15.0% |
| !! | ATATATAGTTTAAGGAATAA+AGG | - | chr1_4:52759235-52759254 | Msa0169570:intron | 15.0% |
| !! | TATATAGTTTAAGGAATAAA+GGG | - | chr1_4:52759236-52759255 | Msa0169570:intron | 15.0% |
| !! | ATATTTAATGTCAATATTGA+GGG | - | chr1_4:52759448-52759467 | Msa0169570:intron | 15.0% |
| !! | TTAATGATAAGAAACAATTT+GGG | + | chr1_4:52759575-52759594 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAACAATT+TGG | + | chr1_4:52759576-52759595 | None:intergenic | 15.0% |
| !! | TTTCTTATCATTAATTAAAG+TGG | - | chr1_4:52759581-52759600 | Msa0169570:intron | 15.0% |
| !! | GAAATAAAAAGTAAGATAGA+AGG | + | chr1_4:52758874-52758893 | None:intergenic | 20.0% |
| !! | TCAAATGTTAAATTAACATG+TGG | - | chr1_4:52759024-52759043 | Msa0169570:CDS | 20.0% |
| !! | CAAATGTTAAATTAACATGT+GGG | - | chr1_4:52759025-52759044 | Msa0169570:CDS | 20.0% |
| !! | AAATGTTAAATTAACATGTG+GGG | - | chr1_4:52759026-52759045 | Msa0169570:CDS | 20.0% |
| !!! | GTGTTTTTTTTTTGTTGAAA+TGG | - | chr1_4:52759048-52759067 | Msa0169570:CDS | 20.0% |
| !! | ATATAGTTTAAGGAATAAAG+GGG | - | chr1_4:52759237-52759256 | Msa0169570:intron | 20.0% |
| !! | ATACTTACTTATTGTCTTAT+CGG | - | chr1_4:52759404-52759423 | Msa0169570:intron | 20.0% |
| !! | CATATTTAATGTCAATATTG+AGG | - | chr1_4:52759447-52759466 | Msa0169570:intron | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | - | chr1_4:52759522-52759541 | Msa0169570:intron | 20.0% |
| !!! | TTGAAATTTTGATACATTGA+GGG | - | chr1_4:52759523-52759542 | Msa0169570:intron | 20.0% |
| !! | TAATGATAAGAAACAATTTG+GGG | + | chr1_4:52759574-52759593 | None:intergenic | 20.0% |
| !! | GAAATAAAAAGTAAGATAGA+AGG | + | chr1_4:52758874-52758893 | None:intergenic | 20.0% |
| !! | TCAAATGTTAAATTAACATG+TGG | - | chr1_4:52759024-52759043 | Msa0169570:CDS | 20.0% |
| !! | CAAATGTTAAATTAACATGT+GGG | - | chr1_4:52759025-52759044 | Msa0169570:CDS | 20.0% |
| !! | AAATGTTAAATTAACATGTG+GGG | - | chr1_4:52759026-52759045 | Msa0169570:CDS | 20.0% |
| !!! | GTGTTTTTTTTTTGTTGAAA+TGG | - | chr1_4:52759048-52759067 | Msa0169570:CDS | 20.0% |
| !! | ATATAGTTTAAGGAATAAAG+GGG | - | chr1_4:52759237-52759256 | Msa0169570:intron | 20.0% |
| !! | ATACTTACTTATTGTCTTAT+CGG | - | chr1_4:52759404-52759423 | Msa0169570:intron | 20.0% |
| !! | CATATTTAATGTCAATATTG+AGG | - | chr1_4:52759447-52759466 | Msa0169570:intron | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | - | chr1_4:52759522-52759541 | Msa0169570:intron | 20.0% |
| !!! | TTGAAATTTTGATACATTGA+GGG | - | chr1_4:52759523-52759542 | Msa0169570:intron | 20.0% |
| !! | TAATGATAAGAAACAATTTG+GGG | + | chr1_4:52759574-52759593 | None:intergenic | 20.0% |
| !! | CATTTGAAGCATTTATTCAT+AGG | + | chr1_4:52759011-52759030 | None:intergenic | 25.0% |
| ! | GGAGAGAAAATGTTAATTTA+AGG | + | chr1_4:52759106-52759125 | None:intergenic | 25.0% |
| ! | CTTAGTATTAAGGACTAAAT+TGG | + | chr1_4:52759127-52759146 | None:intergenic | 25.0% |
| ! | TGACTAAGTTCAAAAACTTT+AGG | - | chr1_4:52759195-52759214 | Msa0169570:intron | 25.0% |
| ! | GACTAAGTTCAAAAACTTTA+GGG | - | chr1_4:52759196-52759215 | Msa0169570:intron | 25.0% |
| !! | TTTGAAATTTCGATACTTGA+AGG | + | chr1_4:52759310-52759329 | None:intergenic | 25.0% |
| ! | ATCGAAATTTCAAAATAGTC+CGG | - | chr1_4:52759316-52759335 | Msa0169570:intron | 25.0% |
| !! | TATTTTACAACTGTCATTGA+GGG | - | chr1_4:52759622-52759641 | Msa0169570:intron | 25.0% |
| ! | AAACTATATAACCTAAGAGA+CGG | + | chr1_4:52759658-52759677 | None:intergenic | 25.0% |
| ! | AAAGATTGAAATTCTGTAAC+TGG | - | chr1_4:52759727-52759746 | Msa0169570:intron | 25.0% |
| ! | AAGATTGAAATTCTGTAACT+GGG | - | chr1_4:52759728-52759747 | Msa0169570:intron | 25.0% |
| ! | GTATAAATTTGAAGAAAGAG+CGG | - | chr1_4:52759783-52759802 | Msa0169570:intron | 25.0% |
| !! | AAGCATTTAGAGTTAAGAAA+AGG | - | chr1_4:52759886-52759905 | Msa0169570:intron | 25.0% |
| !! | ATGAAATTTTCGTTTGTGAA+AGG | - | chr1_4:52759961-52759980 | Msa0169570:intron | 25.0% |
| !! | TGAAATTTTCGTTTGTGAAA+GGG | - | chr1_4:52759962-52759981 | Msa0169570:intron | 25.0% |
| !! | CATTTGAAGCATTTATTCAT+AGG | + | chr1_4:52759011-52759030 | None:intergenic | 25.0% |
| ! | GGAGAGAAAATGTTAATTTA+AGG | + | chr1_4:52759106-52759125 | None:intergenic | 25.0% |
| ! | CTTAGTATTAAGGACTAAAT+TGG | + | chr1_4:52759127-52759146 | None:intergenic | 25.0% |
| ! | TGACTAAGTTCAAAAACTTT+AGG | - | chr1_4:52759195-52759214 | Msa0169570:intron | 25.0% |
| ! | GACTAAGTTCAAAAACTTTA+GGG | - | chr1_4:52759196-52759215 | Msa0169570:intron | 25.0% |
| !! | TTTGAAATTTCGATACTTGA+AGG | + | chr1_4:52759310-52759329 | None:intergenic | 25.0% |
| ! | ATCGAAATTTCAAAATAGTC+CGG | - | chr1_4:52759316-52759335 | Msa0169570:intron | 25.0% |
| !! | TATTTTACAACTGTCATTGA+GGG | - | chr1_4:52759622-52759641 | Msa0169570:intron | 25.0% |
| ! | AAACTATATAACCTAAGAGA+CGG | + | chr1_4:52759658-52759677 | None:intergenic | 25.0% |
| ! | AAAGATTGAAATTCTGTAAC+TGG | - | chr1_4:52759727-52759746 | Msa0169570:intron | 25.0% |
| ! | AAGATTGAAATTCTGTAACT+GGG | - | chr1_4:52759728-52759747 | Msa0169570:intron | 25.0% |
| ! | GTATAAATTTGAAGAAAGAG+CGG | - | chr1_4:52759783-52759802 | Msa0169570:intron | 25.0% |
| !! | AAGCATTTAGAGTTAAGAAA+AGG | - | chr1_4:52759886-52759905 | Msa0169570:intron | 25.0% |
| !! | ATGAAATTTTCGTTTGTGAA+AGG | - | chr1_4:52759961-52759980 | Msa0169570:intron | 25.0% |
| !! | TGAAATTTTCGTTTGTGAAA+GGG | - | chr1_4:52759962-52759981 | Msa0169570:intron | 25.0% |
| AGTAAGATAGAAGGAAGAAA+TGG | + | chr1_4:52758865-52758884 | None:intergenic | 30.0% | |
| ATTAATTAAAGTGGCACCAA+TGG | - | chr1_4:52759590-52759609 | Msa0169570:intron | 30.0% | |
| ! | CTATTTTACAACTGTCATTG+AGG | - | chr1_4:52759621-52759640 | Msa0169570:intron | 30.0% |
| TTCAAAGAGGATGTTGAAAA+AGG | - | chr1_4:52759992-52760011 | Msa0169570:intron | 30.0% | |
| AGTAAGATAGAAGGAAGAAA+TGG | + | chr1_4:52758865-52758884 | None:intergenic | 30.0% | |
| ATTAATTAAAGTGGCACCAA+TGG | - | chr1_4:52759590-52759609 | Msa0169570:intron | 30.0% | |
| ! | CTATTTTACAACTGTCATTG+AGG | - | chr1_4:52759621-52759640 | Msa0169570:intron | 30.0% |
| TTCAAAGAGGATGTTGAAAA+AGG | - | chr1_4:52759992-52760011 | Msa0169570:intron | 30.0% | |
| AGAATGGAAGTGAAACTAAC+CGG | + | chr1_4:52758825-52758844 | None:intergenic | 35.0% | |
| AAGGAACGAAAATGGAAGAA+TGG | + | chr1_4:52758841-52758860 | None:intergenic | 35.0% | |
| GAAATGGAAAGGAACGAAAA+TGG | + | chr1_4:52758849-52758868 | None:intergenic | 35.0% | |
| GATAGAAGGAAGAAATGGAA+AGG | + | chr1_4:52758860-52758879 | None:intergenic | 35.0% | |
| TCTCGAACGTCTTAGTATTA+AGG | + | chr1_4:52759137-52759156 | None:intergenic | 35.0% | |
| TTTCAAAATAGTCCGGATTG+TGG | - | chr1_4:52759323-52759342 | Msa0169570:intron | 35.0% | |
| TAAAATAGTCACAGTGCCAT+TGG | + | chr1_4:52759609-52759628 | None:intergenic | 35.0% | |
| !!! | AACTGGGTTGTTTGTTTTGT+TGG | - | chr1_4:52759744-52759763 | Msa0169570:intron | 35.0% |
| !!! | ACTGGGTTGTTTGTTTTGTT+GGG | - | chr1_4:52759745-52759764 | Msa0169570:intron | 35.0% |
| AAGTTGTGTAGTATCAGAGA+TGG | - | chr1_4:52759809-52759828 | Msa0169570:intron | 35.0% | |
| AGTTGTGTAGTATCAGAGAT+GGG | - | chr1_4:52759810-52759829 | Msa0169570:intron | 35.0% | |
| TATCAGAGATGGGAGATATT+TGG | - | chr1_4:52759820-52759839 | Msa0169570:intron | 35.0% | |
| !! | AGATATTTGGTGGTCACTTT+TGG | - | chr1_4:52759833-52759852 | Msa0169570:intron | 35.0% |
| !!! | GATATTTGGTGGTCACTTTT+GGG | - | chr1_4:52759834-52759853 | Msa0169570:intron | 35.0% |
| !!! | ATATTTGGTGGTCACTTTTG+GGG | - | chr1_4:52759835-52759854 | Msa0169570:intron | 35.0% |
| AGTTAAGAAAAGGAATGCAG+AGG | - | chr1_4:52759896-52759915 | Msa0169570:intron | 35.0% | |
| AAGAGGATGTTGAAAAAGGT+TGG | - | chr1_4:52759996-52760015 | Msa0169570:intron | 35.0% | |
| GTAACACAAGTATCAGGAAT+TGG | + | chr1_4:52760038-52760057 | None:intergenic | 35.0% | |
| CAAACAGTAACACAAGTATC+AGG | + | chr1_4:52760044-52760063 | None:intergenic | 35.0% | |
| ! | GATACTTGTGTTACTGTTTG+TGG | - | chr1_4:52760044-52760063 | Msa0169570:intron | 35.0% |
| ACCAACATCAAGTACCTAAT+TGG | - | chr1_4:52760120-52760139 | Msa0169570:intron | 35.0% | |
| TCCAATTAGGTACTTGATGT+TGG | + | chr1_4:52760124-52760143 | None:intergenic | 35.0% | |
| ! | AGACATGTGTCATTCCAATT+AGG | + | chr1_4:52760137-52760156 | None:intergenic | 35.0% |
| ATTGGAATGACACATGTCTT+AGG | - | chr1_4:52760138-52760157 | Msa0169570:five_prime_UTR | 35.0% | |
| AGAATGGAAGTGAAACTAAC+CGG | + | chr1_4:52758825-52758844 | None:intergenic | 35.0% | |
| AAGGAACGAAAATGGAAGAA+TGG | + | chr1_4:52758841-52758860 | None:intergenic | 35.0% | |
| GAAATGGAAAGGAACGAAAA+TGG | + | chr1_4:52758849-52758868 | None:intergenic | 35.0% | |
| GATAGAAGGAAGAAATGGAA+AGG | + | chr1_4:52758860-52758879 | None:intergenic | 35.0% | |
| TCTCGAACGTCTTAGTATTA+AGG | + | chr1_4:52759137-52759156 | None:intergenic | 35.0% | |
| TTTCAAAATAGTCCGGATTG+TGG | - | chr1_4:52759323-52759342 | Msa0169570:intron | 35.0% | |
| TAAAATAGTCACAGTGCCAT+TGG | + | chr1_4:52759609-52759628 | None:intergenic | 35.0% | |
| !!! | AACTGGGTTGTTTGTTTTGT+TGG | - | chr1_4:52759744-52759763 | Msa0169570:intron | 35.0% |
| !!! | ACTGGGTTGTTTGTTTTGTT+GGG | - | chr1_4:52759745-52759764 | Msa0169570:intron | 35.0% |
| AAGTTGTGTAGTATCAGAGA+TGG | - | chr1_4:52759809-52759828 | Msa0169570:intron | 35.0% | |
| AGTTGTGTAGTATCAGAGAT+GGG | - | chr1_4:52759810-52759829 | Msa0169570:intron | 35.0% | |
| TATCAGAGATGGGAGATATT+TGG | - | chr1_4:52759820-52759839 | Msa0169570:intron | 35.0% | |
| !! | AGATATTTGGTGGTCACTTT+TGG | - | chr1_4:52759833-52759852 | Msa0169570:intron | 35.0% |
| !!! | GATATTTGGTGGTCACTTTT+GGG | - | chr1_4:52759834-52759853 | Msa0169570:intron | 35.0% |
| !!! | ATATTTGGTGGTCACTTTTG+GGG | - | chr1_4:52759835-52759854 | Msa0169570:intron | 35.0% |
| AGTTAAGAAAAGGAATGCAG+AGG | - | chr1_4:52759896-52759915 | Msa0169570:intron | 35.0% | |
| AAGAGGATGTTGAAAAAGGT+TGG | - | chr1_4:52759996-52760015 | Msa0169570:intron | 35.0% | |
| GTAACACAAGTATCAGGAAT+TGG | + | chr1_4:52760038-52760057 | None:intergenic | 35.0% | |
| CAAACAGTAACACAAGTATC+AGG | + | chr1_4:52760044-52760063 | None:intergenic | 35.0% | |
| ! | GATACTTGTGTTACTGTTTG+TGG | - | chr1_4:52760044-52760063 | Msa0169570:intron | 35.0% |
| ACCAACATCAAGTACCTAAT+TGG | - | chr1_4:52760120-52760139 | Msa0169570:intron | 35.0% | |
| TCCAATTAGGTACTTGATGT+TGG | + | chr1_4:52760124-52760143 | None:intergenic | 35.0% | |
| ! | AGACATGTGTCATTCCAATT+AGG | + | chr1_4:52760137-52760156 | None:intergenic | 35.0% |
| ATTGGAATGACACATGTCTT+AGG | - | chr1_4:52760138-52760157 | Msa0169570:five_prime_UTR | 35.0% | |
| GACTAACATAGTCCACAATC+CGG | + | chr1_4:52759338-52759357 | None:intergenic | 40.0% | |
| !!! | TGAGGGATTGTTTTAACGTC+AGG | - | chr1_4:52759465-52759484 | Msa0169570:intron | 40.0% |
| !!! | GAGGGATTGTTTTAACGTCA+GGG | - | chr1_4:52759466-52759485 | Msa0169570:intron | 40.0% |
| TCGTTGTGTATTGTGTTGTG+TGG | - | chr1_4:52759685-52759704 | Msa0169570:intron | 40.0% | |
| TGTGTATTGTGTTGTGTGGT+TGG | - | chr1_4:52759689-52759708 | Msa0169570:intron | 40.0% | |
| !!! | TATTTGGTGGTCACTTTTGG+GGG | - | chr1_4:52759836-52759855 | Msa0169570:intron | 40.0% |
| GACTAACATAGTCCACAATC+CGG | + | chr1_4:52759338-52759357 | None:intergenic | 40.0% | |
| !!! | TGAGGGATTGTTTTAACGTC+AGG | - | chr1_4:52759465-52759484 | Msa0169570:intron | 40.0% |
| !!! | GAGGGATTGTTTTAACGTCA+GGG | - | chr1_4:52759466-52759485 | Msa0169570:intron | 40.0% |
| TCGTTGTGTATTGTGTTGTG+TGG | - | chr1_4:52759685-52759704 | Msa0169570:intron | 40.0% | |
| TGTGTATTGTGTTGTGTGGT+TGG | - | chr1_4:52759689-52759708 | Msa0169570:intron | 40.0% | |
| !!! | TATTTGGTGGTCACTTTTGG+GGG | - | chr1_4:52759836-52759855 | Msa0169570:intron | 40.0% |
| ATGGAAGTGAAACTAACCGG+CGG | + | chr1_4:52758822-52758841 | None:intergenic | 45.0% | |
| GAATTCGAACTCCGTCTCTT+AGG | - | chr1_4:52759644-52759663 | Msa0169570:intron | 45.0% | |
| CAGAGATGGGAGATATTTGG+TGG | - | chr1_4:52759823-52759842 | Msa0169570:intron | 45.0% | |
| AAAGGAATGCAGAGGAGCAA+AGG | - | chr1_4:52759904-52759923 | Msa0169570:intron | 45.0% | |
| ! | AGCAAAGGTTGAAGAGTGCA+AGG | - | chr1_4:52759919-52759938 | Msa0169570:intron | 45.0% |
| ! | GCAAAGGTTGAAGAGTGCAA+GGG | - | chr1_4:52759920-52759939 | Msa0169570:intron | 45.0% |
| ! | CAAAGGTTGAAGAGTGCAAG+GGG | - | chr1_4:52759921-52759940 | Msa0169570:intron | 45.0% |
| AAAGGGTCTGCACTTCAAAG+AGG | - | chr1_4:52759979-52759998 | Msa0169570:intron | 45.0% | |
| GGAATGACACATGTCTTAGG+AGG | - | chr1_4:52760141-52760160 | Msa0169570:five_prime_UTR | 45.0% | |
| CTCTTCTCAGTCTTCTCAGT+AGG | - | chr1_4:52760187-52760206 | Msa0169570:five_prime_UTR | 45.0% | |
| ATGGAAGTGAAACTAACCGG+CGG | + | chr1_4:52758822-52758841 | None:intergenic | 45.0% | |
| GAATTCGAACTCCGTCTCTT+AGG | - | chr1_4:52759644-52759663 | Msa0169570:intron | 45.0% | |
| CAGAGATGGGAGATATTTGG+TGG | - | chr1_4:52759823-52759842 | Msa0169570:intron | 45.0% | |
| AAAGGAATGCAGAGGAGCAA+AGG | - | chr1_4:52759904-52759923 | Msa0169570:intron | 45.0% | |
| ! | AGCAAAGGTTGAAGAGTGCA+AGG | - | chr1_4:52759919-52759938 | Msa0169570:intron | 45.0% |
| ! | GCAAAGGTTGAAGAGTGCAA+GGG | - | chr1_4:52759920-52759939 | Msa0169570:intron | 45.0% |
| ! | CAAAGGTTGAAGAGTGCAAG+GGG | - | chr1_4:52759921-52759940 | Msa0169570:intron | 45.0% |
| AAAGGGTCTGCACTTCAAAG+AGG | - | chr1_4:52759979-52759998 | Msa0169570:intron | 45.0% | |
| GGAATGACACATGTCTTAGG+AGG | - | chr1_4:52760141-52760160 | Msa0169570:five_prime_UTR | 45.0% | |
| !! | TTATATTTATATATAGTTTA+AGG | - | chr1_4:52759227-52759246 | Msa0169570:intron | 5.0% |
| !! | TTATATTTATATATAGTTTA+AGG | - | chr1_4:52759227-52759246 | Msa0169570:intron | 5.0% |
| CTTGTCCTGCAACAACGACA+GGG | + | chr1_4:52759869-52759888 | None:intergenic | 50.0% | |
| AGAGTGCAAGGGGAAGAGAA+AGG | - | chr1_4:52759931-52759950 | Msa0169570:intron | 50.0% | |
| TGCTGAAGCTTGTGCTCGTA+CGG | - | chr1_4:52760088-52760107 | Msa0169570:intron | 50.0% | |
| CTTGTCCTGCAACAACGACA+GGG | + | chr1_4:52759869-52759888 | None:intergenic | 50.0% | |
| AGAGTGCAAGGGGAAGAGAA+AGG | - | chr1_4:52759931-52759950 | Msa0169570:intron | 50.0% | |
| TGCTGAAGCTTGTGCTCGTA+CGG | - | chr1_4:52760088-52760107 | Msa0169570:intron | 50.0% | |
| GAAGTGAAACTAACCGGCGG+TGG | + | chr1_4:52758819-52758838 | None:intergenic | 55.0% | |
| GCTTGTCCTGCAACAACGAC+AGG | + | chr1_4:52759870-52759889 | None:intergenic | 55.0% | |
| GAAGTGAAACTAACCGGCGG+TGG | + | chr1_4:52758819-52758838 | None:intergenic | 55.0% | |
| GCTTGTCCTGCAACAACGAC+AGG | + | chr1_4:52759870-52759889 | None:intergenic | 55.0% | |
| !! | GGTGGCGGAGAAAGAGAAGG+CGG | + | chr1_4:52758801-52758820 | None:intergenic | 60.0% |
| TTCTCTTTCTCCGCCACCGC+CGG | - | chr1_4:52758803-52758822 | Msa0169570:CDS | 60.0% | |
| GTGAAACTAACCGGCGGTGG+CGG | + | chr1_4:52758816-52758835 | None:intergenic | 60.0% | |
| GCAGTCCCTGTCGTTGTTGC+AGG | - | chr1_4:52759861-52759880 | Msa0169570:intron | 60.0% | |
| !! | GGTGGCGGAGAAAGAGAAGG+CGG | + | chr1_4:52758801-52758820 | None:intergenic | 60.0% |
| TTCTCTTTCTCCGCCACCGC+CGG | - | chr1_4:52758803-52758822 | Msa0169570:CDS | 60.0% | |
| GTGAAACTAACCGGCGGTGG+CGG | + | chr1_4:52758816-52758835 | None:intergenic | 60.0% | |
| GCAGTCCCTGTCGTTGTTGC+AGG | - | chr1_4:52759861-52759880 | Msa0169570:intron | 60.0% | |
| !! | GGCGGTGGCGGAGAAAGAGA+AGG | + | chr1_4:52758804-52758823 | None:intergenic | 65.0% |
| !! | GGCGGTGGCGGAGAAAGAGA+AGG | + | chr1_4:52758804-52758823 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52758739 | 52760208 | 52758739 | ID=Msa0169570;Name=Msa0169570 |
| chr1_4 | mRNA | 52758739 | 52760208 | 52758739 | ID=Msa0169570-mRNA-1;Parent=Msa0169570;Name=Msa0169570-mRNA-1;_AED=0.18;_eAED=0.20;_QI=94|0|0.5|1|0|0|2|0|126 |
| chr1_4 | exon | 52758739 | 52759127 | 52758739 | ID=Msa0169570-mRNA-1:exon:15714;Parent=Msa0169570-mRNA-1 |
| chr1_4 | exon | 52760123 | 52760208 | 52760123 | ID=Msa0169570-mRNA-1:exon:15713;Parent=Msa0169570-mRNA-1 |
| chr1_4 | five_prime_UTR | 52760123 | 52760208 | 52760123 | ID=Msa0169570-mRNA-1:five_prime_utr;Parent=Msa0169570-mRNA-1 |
| chr1_4 | five_prime_UTR | 52759120 | 52759127 | 52759120 | ID=Msa0169570-mRNA-1:five_prime_utr;Parent=Msa0169570-mRNA-1 |
| chr1_4 | CDS | 52758739 | 52759119 | 52758739 | ID=Msa0169570-mRNA-1:cds;Parent=Msa0169570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
